RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy5297
(185 letters)
>d1wb9a2 c.37.1.12 (A:567-800) DNA repair protein MutS, the
C-terminal domain {Escherichia coli [TaxId: 562]}
Length = 234
Score = 125 bits (315), Expect = 7e-37
Identities = 76/183 (41%), Positives = 107/183 (58%), Gaps = 1/183 (0%)
Query: 3 TGTLVLNQCRHPIVELQGGVSYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSIGVSVFL 62
+ + + RHP+VE +I N + S + ++TGPNMGGKSTY+R + +
Sbjct: 9 KPGIRITEGRHPVVEQVLNEPFIANPLNL-SPQRRMLIITGPNMGGKSTYMRQTALIALM 67
Query: 63 AQIGCFVPCDSATISVVDQIFTRVGAADSQYRGISTFMMEMKETATVIKKCTENSLVIID 122
A IG +VP I +D+IFTRVGAAD G STFM+EM ETA ++ TE SLV++D
Sbjct: 68 AYIGSYVPAQKVEIGPIDRIFTRVGAADDLASGRSTFMVEMTETANILHNATEYSLVLMD 127
Query: 123 ELGRGTSTFDGFGMACSIARELASNRQPFTLFATHFHEIALLSRVIPTFRNVHESKYLYH 182
E+GRGTST+DG +A + A LA+ + TLFATH+ E+ L + NVH +
Sbjct: 128 EIGRGTSTYDGLSLAWACAENLANKIKALTLFATHYFELTQLPEKMEGVANVHLDALEHG 187
Query: 183 TNV 185
+
Sbjct: 188 DTI 190
>d1ewqa2 c.37.1.12 (A:542-765) DNA repair protein MutS, the
C-terminal domain {Thermus aquaticus [TaxId: 271]}
Length = 224
Score = 109 bits (272), Expect = 1e-30
Identities = 66/160 (41%), Positives = 96/160 (60%), Gaps = 5/160 (3%)
Query: 3 TGTLVLNQCRHPIVELQGGVSYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSIGVSVFL 62
L + RHP+VE + ++PND+ L+TGPNM GKST++R + L
Sbjct: 7 GDRLQIRAGRHPVVERR--TEFVPNDLEMAH---ELVLITGPNMAGKSTFLRQTALIALL 61
Query: 63 AQIGCFVPCDSATISVVDQIFTRVGAADSQYRGISTFMMEMKETATVIKKCTENSLVIID 122
AQ+G FVP + A + + D I+TR+GA+D G STFM+EM+E A ++K+ TENSLV++D
Sbjct: 62 AQVGSFVPAEEAHLPLFDGIYTRIGASDDLAGGKSTFMVEMEEVALILKEATENSLVLLD 121
Query: 123 ELGRGTSTFDGFGMACSIARELASNRQPFTLFATHFHEIA 162
E+GRGTS+ DG +A ++A L R +F A
Sbjct: 122 EVGRGTSSLDGVAIATAVAEALHERRAYTLFATHYFELTA 161
>g1xew.1 c.37.1.12 (X:,Y:) Smc head domain {Pyrococcus furiosus
[TaxId: 2261]}
Length = 329
Score = 31.1 bits (69), Expect = 0.074
Identities = 14/44 (31%), Positives = 19/44 (43%), Gaps = 5/44 (11%)
Query: 16 VELQGGVSYI--PNDVYFKSGEVSFNLVTGPNMGGKSTYIRSIG 57
+EL+G SY + F G F + G N GKS +I
Sbjct: 7 LELKGFKSYGNKKVVIPFSKG---FTAIVGANGSGKSNIGDAIL 47
>g1ii8.1 c.37.1.12 (A:,B:) Rad50 {Archaeon Pyrococcus furiosus
[TaxId: 2261]}
Length = 369
Score = 31.0 bits (68), Expect = 0.082
Identities = 15/46 (32%), Positives = 24/46 (52%), Gaps = 3/46 (6%)
Query: 16 VELQGGVSYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSIGVSVF 61
V ++ S+ V FK G NL+ G N GKS+ + +I V ++
Sbjct: 6 VTVKNFRSHSDTVVEFKEG---INLIIGQNGSGKSSLLDAILVGLY 48
>d1e69a_ c.37.1.12 (A:) Smc head domain {Thermotoga maritima
[TaxId: 2336]}
Length = 308
Score = 30.4 bits (67), Expect = 0.11
Identities = 13/43 (30%), Positives = 20/43 (46%), Gaps = 4/43 (9%)
Query: 16 VELQGGVSYI-PNDVYFKSGEVSFNLVTGPNMGGKSTYIRSIG 57
+ L+G S+ P+ + F + GPN GKS I +I
Sbjct: 6 LYLKGFKSFGRPSLIGFSDR---VTAIVGPNGSGKSNIIDAIK 45
>g1f2t.1 c.37.1.12 (A:,B:) Rad50 {Archaeon Pyrococcus furiosus
[TaxId: 2261]}
Length = 292
Score = 30.1 bits (66), Expect = 0.14
Identities = 14/41 (34%), Positives = 21/41 (51%), Gaps = 3/41 (7%)
Query: 16 VELQGGVSYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSI 56
V ++ S+ V FK G NL+ G N GKS+ + +I
Sbjct: 6 VTVKNFRSHSDTVVEFKEGI---NLIIGQNGSGKSSLLDAI 43
>d1w1wa_ c.37.1.12 (A:) Smc head domain {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 427
Score = 28.9 bits (63), Expect = 0.38
Identities = 14/41 (34%), Positives = 19/41 (46%), Gaps = 1/41 (2%)
Query: 16 VELQGGVSYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRSI 56
+EL SY GE +F + GPN GKS + +I
Sbjct: 6 LELSNFKSYR-GVTKVGFGESNFTSIIGPNGSGKSNMMDAI 45
>d1qhla_ c.37.1.12 (A:) Cell division protein MukB {Escherichia
coli [TaxId: 562]}
Length = 222
Score = 28.1 bits (61), Expect = 0.59
Identities = 7/30 (23%), Positives = 12/30 (40%), Gaps = 4/30 (13%)
Query: 31 FKSGEVSF----NLVTGPNMGGKSTYIRSI 56
F + ++G N GKST + +
Sbjct: 15 FFARTFDLDELVTTLSGGNGAGKSTTMAAF 44
>d1gvnb_ c.37.1.21 (B:) Plasmid maintenance system epsilon/zeta,
toxin zeta subunit {Streptococcus pyogenes [TaxId:
1314]}
Length = 273
Score = 28.0 bits (61), Expect = 0.72
Identities = 13/129 (10%), Positives = 31/129 (24%), Gaps = 14/129 (10%)
Query: 40 LVTGPNMGGKSTYIRSIGVSVFLAQIGCFVPCDSATISVVDQIFTRVGAADSQYRGISTF 99
L+ G GK++ +I F G + D+ T + +
Sbjct: 36 LLGGQPGSGKTSLRSAI----FEETQGNVIVIDNDTFK----------QQHPNFDELVKL 81
Query: 100 MMEMKETATVIKKCTENSLVIIDELGRGTSTFDGFGMACSIARELASNRQPFTLFATHFH 159
+ +I +G + + + + T +
Sbjct: 82 YEKDVVKHVTPYSNRMTEAIISRLSDQGYNLVIEGTGRTTDVPIQTATMLQAKGYETKMY 141
Query: 160 EIALLSRVI 168
+A+
Sbjct: 142 VMAVPKINS 150
>d1zhva2 d.58.18.8 (A:62-127) Hypothetical protein Atu0741
{Agrobacterium tumefaciens [TaxId: 358]}
Length = 66
Score = 26.2 bits (58), Expect = 0.74
Identities = 9/37 (24%), Positives = 16/37 (43%)
Query: 127 GTSTFDGFGMACSIARELASNRQPFTLFATHFHEIAL 163
G FD G+ S+ L++N + +T + L
Sbjct: 9 GPFAFDETGIVLSVISPLSTNGIGIFVVSTFDGDHLL 45
>d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter,
ATP-binding protein {Methanosarcina acetivorans [TaxId:
2214]}
Length = 229
Score = 27.3 bits (60), Expect = 1.1
Identities = 11/67 (16%), Positives = 23/67 (34%), Gaps = 9/67 (13%)
Query: 27 NDVYFKSGEVSFNLVTGPNMGGKSTYIRSIGVSVFLAQIGCFVPCDSATISVVDQIFTRV 86
+++ K + ++ GP GK+ ++ I F DS I + + T +
Sbjct: 17 DNLSLKVESGEYFVILGPTGAGKTLFLEL---------IAGFHVPDSGRILLDGKDVTDL 67
Query: 87 GAADSQY 93
Sbjct: 68 SPEKHDI 74
>d1zvpa2 d.58.18.9 (A:68-131) Hypothetical protein VC0802 {Vibrio
cholerae [TaxId: 666]}
Length = 64
Score = 25.0 bits (55), Expect = 1.4
Identities = 7/31 (22%), Positives = 16/31 (51%)
Query: 129 STFDGFGMACSIARELASNRQPFTLFATHFH 159
S+ + G+ + A +LA + + A ++H
Sbjct: 12 SSLEAVGLTAAFATKLAEHGISANVIAGYYH 42
>d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12
uptake, BtuD {Escherichia coli [TaxId: 562]}
Length = 231
Score = 26.8 bits (59), Expect = 1.6
Identities = 14/45 (31%), Positives = 24/45 (53%), Gaps = 5/45 (11%)
Query: 15 IVELQG-GVSYIPNDVYF--KSGEVSFNLVTGPNMGGKSTYIRSI 56
+++LQ S + ++GE+ +LV GPN GKST + +
Sbjct: 3 VMQLQDVAESTRLGPLSGEVRAGEI-LHLV-GPNGAGKSTLLARM 45
>d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii
[TaxId: 2190]}
Length = 254
Score = 26.1 bits (57), Expect = 2.9
Identities = 26/119 (21%), Positives = 46/119 (38%), Gaps = 17/119 (14%)
Query: 27 NDVYF--KSGEVSFNLVTGPNMGGKSTYIRSIGVSVFLAQIGCFVPCDSATISVVDQIFT 84
+ V G+V ++ GPN GKST I I F+ D + ++ T
Sbjct: 21 DGVSISVNKGDV-TLII-GPNGSGKSTLINV---------ITGFLKADEGRVYFENKDIT 69
Query: 85 RVGAADSQYRGISTFMMEMKETATVIKKCTENSLVIIDELGRGTSTFDGFGMACSIARE 143
A+ + G ++ +T +K+ T ++I E+ G S + I +E
Sbjct: 70 NKEPAELYHYG----IVRTFQTPQPLKEMTVLENLLIGEICPGESPLNSLFYKKWIPKE 124
>d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK,
N-terminal domain {Escherichia coli [TaxId: 562]}
Length = 232
Score = 25.7 bits (56), Expect = 3.0
Identities = 13/63 (20%), Positives = 21/63 (33%), Gaps = 9/63 (14%)
Query: 27 NDVYFKSGEVSFNLVTGPNMGGKSTYIRSIGVSVFLAQIGCFVPCDSATISVVDQIFTRV 86
D+ E F + GP+ GKST +R I S + + ++
Sbjct: 17 KDINLDIHEGEFVVFVGPSGCGKSTLLRM---------IAGLETITSGDLFIGEKRMNDT 67
Query: 87 GAA 89
A
Sbjct: 68 PPA 70
>d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544
{Thermotoga maritima [TaxId: 2336]}
Length = 238
Score = 25.0 bits (54), Expect = 5.6
Identities = 13/32 (40%), Positives = 19/32 (59%), Gaps = 4/32 (12%)
Query: 27 NDVYF--KSGEVSFNLVTGPNMGGKSTYIRSI 56
+ F + GE+ F L+ GPN GK+T +R I
Sbjct: 19 KGISFEIEEGEI-FGLI-GPNGAGKTTTLRII 48
>d1gpza2 g.18.1.1 (A:290-357) Complement C1R protease domains
{Human (Homo sapiens) [TaxId: 9606]}
Length = 68
Score = 23.6 bits (50), Expect = 5.7
Identities = 5/46 (10%), Positives = 11/46 (23%)
Query: 10 QCRHPIVELQGGVSYIPNDVYFKSGEVSFNLVTGPNMGGKSTYIRS 55
+C P + + Y G + + + S
Sbjct: 2 KCPQPKTLDEFTIIQNLQPQYQFRDYFIATCKQGYQLIEGNQVLHS 47
>d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895
{Pyrococcus furiosus [TaxId: 2261]}
Length = 200
Score = 24.9 bits (54), Expect = 5.7
Identities = 7/30 (23%), Positives = 14/30 (46%)
Query: 27 NDVYFKSGEVSFNLVTGPNMGGKSTYIRSI 56
+ + + GPN GK+T +++I
Sbjct: 18 ERITMTIEKGNVVNFHGPNGIGKTTLLKTI 47
>d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV,
N-terminal domain {Archaeon Sulfolobus solfataricus
[TaxId: 2287]}
Length = 242
Score = 25.0 bits (54), Expect = 5.9
Identities = 11/75 (14%), Positives = 23/75 (30%), Gaps = 9/75 (12%)
Query: 27 NDVYFKSGEVSFNLVTGPNMGGKSTYIRSIGVSVFLAQIGCFVPCDSATISVVDQIFTRV 86
++V + GP+ GK+T++R I + + D++
Sbjct: 22 DNVNINIENGERFGILGPSGAGKTTFMRI---------IAGLDVPSTGELYFDDRLVASN 72
Query: 87 GAADSQYRGISTFMM 101
G M+
Sbjct: 73 GKLIVPPEDRKIGMV 87
>d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein
Aq_1292 {Aquifex aeolicus [TaxId: 63363]}
Length = 178
Score = 25.0 bits (53), Expect = 6.2
Identities = 6/17 (35%), Positives = 11/17 (64%)
Query: 40 LVTGPNMGGKSTYIRSI 56
++TG GK+T ++ I
Sbjct: 4 IITGEPGVGKTTLVKKI 20
>d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import
ATP-binding protein WtpC (ModC) {Archaeoglobus fulgidus
[TaxId: 2234]}
Length = 240
Score = 24.6 bits (53), Expect = 7.0
Identities = 16/70 (22%), Positives = 24/70 (34%), Gaps = 13/70 (18%)
Query: 28 DVYFKSGEVSFNLVTGPNMGGKSTYIRSIGVSVFLAQIGCFVPCDSATISVVDQIFTRVG 87
+V F+ G L+ GP GKS ++ I V D + + T +
Sbjct: 17 NVDFEMGRDYCVLL-GPTGAGKSVFLEL---------IAGIVKPDRGEVRLNGADITPLP 66
Query: 88 AADSQYRGIS 97
RGI
Sbjct: 67 PER---RGIG 73
>d1slqa_ f.47.1.1 (A:) VP4 membrane interaction domain {Rhesus
rotavirus [TaxId: 10969]}
Length = 270
Score = 24.3 bits (53), Expect = 8.4
Identities = 13/34 (38%), Positives = 16/34 (47%), Gaps = 2/34 (5%)
Query: 27 NDVYFKSGEVSFNLVTG--PNMGGKSTYIRSIGV 58
N V G+ SF L G P M G + + S GV
Sbjct: 124 NSVICTGGDYSFALPVGQWPVMTGGAVSLHSAGV 157
>d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022,
N-terminal domain {Pyrococcus horikoshii [TaxId:
53953]}
Length = 239
Score = 24.4 bits (53), Expect = 9.1
Identities = 16/65 (24%), Positives = 28/65 (43%), Gaps = 8/65 (12%)
Query: 27 NDVYFKSGEVSFNLVTGPNMGGKSTYIRSI--------GVSVFLAQIGCFVPCDSATISV 78
N + + F ++ GP+ GK+T +R I G F + ++P IS+
Sbjct: 23 NKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGRIYFGDRDVTYLPPKDRNISM 82
Query: 79 VDQIF 83
V Q +
Sbjct: 83 VFQSY 87
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.323 0.137 0.404
Gapped
Lambda K H
0.267 0.0435 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 664,130
Number of extensions: 28281
Number of successful extensions: 85
Number of sequences better than 10.0: 1
Number of HSP's gapped: 82
Number of HSP's successfully gapped: 27
Length of query: 185
Length of database: 2,407,596
Length adjustment: 80
Effective length of query: 105
Effective length of database: 1,309,196
Effective search space: 137465580
Effective search space used: 137465580
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 50 (23.8 bits)