Query psy5298
Match_columns 109
No_of_seqs 106 out of 1093
Neff 9.2
Searched_HMMs 46136
Date Fri Aug 16 22:58:02 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy5298.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/5298hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1394|consensus 99.9 1.4E-27 3.1E-32 165.8 8.7 109 1-109 23-133 (440)
2 PRK07314 3-oxoacyl-(acyl carri 99.9 1.7E-25 3.6E-30 161.0 12.7 107 1-108 1-107 (411)
3 PRK09116 3-oxoacyl-(acyl carri 99.9 1.9E-25 4.2E-30 160.7 12.4 109 1-109 1-110 (405)
4 PRK08439 3-oxoacyl-(acyl carri 99.9 4.1E-25 8.9E-30 159.0 12.8 107 1-108 1-107 (406)
5 PRK07967 3-oxoacyl-(acyl carri 99.9 5.6E-25 1.2E-29 158.3 12.7 106 1-108 1-106 (406)
6 PRK08722 3-oxoacyl-(acyl carri 99.9 5.3E-25 1.2E-29 158.8 12.6 107 2-109 4-110 (414)
7 cd00832 CLF Chain-length facto 99.9 5.3E-25 1.1E-29 158.2 12.4 107 2-109 1-107 (399)
8 PRK07103 polyketide beta-ketoa 99.9 5.7E-24 1.2E-28 153.3 12.1 105 1-108 1-113 (410)
9 PRK06333 3-oxoacyl-(acyl carri 99.9 9.3E-24 2E-28 152.5 12.6 107 1-108 3-118 (424)
10 PLN02787 3-oxoacyl-[acyl-carri 99.9 5.9E-24 1.3E-28 157.2 11.2 108 2-109 129-238 (540)
11 TIGR03150 fabF beta-ketoacyl-a 99.9 2.3E-23 5.1E-28 149.4 12.7 106 2-108 1-106 (407)
12 PF00109 ketoacyl-synt: Beta-k 99.9 3.3E-23 7.1E-28 140.4 10.3 108 1-109 1-124 (254)
13 cd00834 KAS_I_II Beta-ketoacyl 99.9 1.1E-21 2.3E-26 140.7 12.6 106 2-108 1-106 (406)
14 PLN02836 3-oxoacyl-[acyl-carri 99.9 6E-22 1.3E-26 143.8 10.8 104 2-108 6-129 (437)
15 COG0304 FabB 3-oxoacyl-(acyl-c 99.9 6.7E-22 1.5E-26 142.1 10.8 106 1-109 2-107 (412)
16 PRK07910 3-oxoacyl-(acyl carri 99.9 1.7E-21 3.6E-26 140.9 12.7 104 1-109 11-117 (418)
17 PRK06519 3-oxoacyl-(acyl carri 99.9 3.7E-21 8E-26 138.3 11.3 103 2-109 6-109 (398)
18 cd00828 elong_cond_enzymes "el 99.9 9.7E-21 2.1E-25 136.1 12.4 101 2-108 1-108 (407)
19 PRK09185 3-oxoacyl-(acyl carri 99.8 2.2E-19 4.7E-24 128.9 11.2 102 1-109 1-106 (392)
20 cd00833 PKS polyketide synthas 99.8 1.6E-19 3.4E-24 130.0 9.4 106 2-108 1-122 (421)
21 TIGR02813 omega_3_PfaA polyket 99.8 4.9E-19 1.1E-23 146.8 11.5 105 2-108 7-127 (2582)
22 smart00825 PKS_KS Beta-ketoacy 99.8 3.8E-19 8.2E-24 128.4 9.3 104 4-108 1-122 (424)
23 PRK05952 3-oxoacyl-(acyl carri 99.8 4.8E-18 1E-22 121.7 9.5 89 1-109 1-89 (381)
24 PRK06501 3-oxoacyl-(acyl carri 99.7 3.7E-17 8E-22 118.6 11.3 99 2-107 11-123 (425)
25 COG3321 Polyketide synthase mo 99.7 6.9E-17 1.5E-21 127.1 10.1 105 3-108 5-126 (1061)
26 PTZ00050 3-oxoacyl-acyl carrie 99.7 6E-16 1.3E-20 112.1 9.9 94 11-108 1-113 (421)
27 KOG1202|consensus 99.5 1.9E-13 4.1E-18 107.1 8.9 108 1-109 10-123 (2376)
28 PRK06147 3-oxoacyl-(acyl carri 98.9 1.4E-08 3E-13 72.4 8.6 91 1-106 2-94 (348)
29 PRK14691 3-oxoacyl-(acyl carri 97.8 5.9E-05 1.3E-09 53.8 5.2 37 69-109 1-37 (342)
30 cd00825 decarbox_cond_enzymes 97.4 0.00052 1.1E-08 48.1 5.6 36 72-108 11-46 (332)
31 COG0332 FabH 3-oxoacyl-[acyl-c 94.1 0.25 5.5E-06 35.3 6.3 31 71-107 51-81 (323)
32 PF13723 Ketoacyl-synt_2: Beta 93.0 0.29 6.3E-06 33.1 4.9 42 59-109 21-62 (218)
33 PRK09352 3-oxoacyl-(acyl carri 92.7 0.5 1.1E-05 33.1 6.0 81 1-107 1-82 (319)
34 PRK07515 3-oxoacyl-(acyl carri 92.2 0.85 1.8E-05 32.9 6.7 33 70-107 93-125 (372)
35 PLN03172 chalcone synthase fam 92.0 0.39 8.5E-06 35.1 4.9 100 3-108 16-133 (393)
36 cd00327 cond_enzymes Condensin 91.8 0.51 1.1E-05 31.7 5.0 32 72-108 7-38 (254)
37 PLN03171 chalcone synthase-lik 91.6 0.47 1E-05 34.8 4.9 23 69-91 105-127 (399)
38 PLN03170 chalcone synthase; Pr 90.2 0.53 1.1E-05 34.5 4.1 99 4-108 21-137 (401)
39 PRK08256 lipid-transfer protei 89.7 0.48 1E-05 34.5 3.5 34 71-105 21-54 (391)
40 PLN03173 chalcone synthase; Pr 87.8 0.73 1.6E-05 33.7 3.4 34 69-108 99-133 (391)
41 PRK06289 acetyl-CoA acetyltran 85.5 1.3 2.8E-05 32.4 3.6 31 72-107 26-56 (403)
42 PRK05790 putative acyltransfer 84.9 1.3 2.9E-05 32.2 3.5 31 72-107 26-56 (393)
43 PRK06064 acetyl-CoA acetyltran 84.8 1.4 3.1E-05 31.9 3.6 31 72-107 22-52 (389)
44 PRK12578 acetyl-CoA acetyltran 82.3 2 4.4E-05 31.2 3.5 31 72-107 21-51 (385)
45 PLN03168 chalcone synthase; Pr 81.4 1.3 2.9E-05 32.3 2.3 37 67-108 96-132 (389)
46 PRK07516 acetyl-CoA acetyltran 80.5 2.6 5.7E-05 30.6 3.6 31 72-107 22-52 (389)
47 KOG3308|consensus 80.1 2.7 5.9E-05 28.4 3.2 40 1-40 1-41 (225)
48 PF00195 Chal_sti_synt_N: Chal 79.9 2.5 5.4E-05 28.8 3.1 35 70-109 98-132 (226)
49 PRK05656 acetyl-CoA acetyltran 78.3 3.3 7.2E-05 30.2 3.6 31 72-107 26-56 (393)
50 PRK06445 acetyl-CoA acetyltran 77.9 3.4 7.4E-05 30.2 3.5 31 72-107 32-62 (394)
51 cd00751 thiolase Thiolase are 77.9 3.9 8.4E-05 29.7 3.8 31 72-107 22-52 (386)
52 TIGR01930 AcCoA-C-Actrans acet 76.8 4 8.6E-05 29.7 3.6 31 72-107 21-51 (386)
53 PRK12880 3-oxoacyl-(acyl carri 76.4 3.2 7E-05 29.9 3.0 21 71-91 59-79 (353)
54 PRK06205 acetyl-CoA acetyltran 75.8 4.3 9.3E-05 29.8 3.6 31 72-107 26-56 (404)
55 PRK07204 3-oxoacyl-(acyl carri 75.7 3.8 8.3E-05 28.8 3.2 20 72-91 52-71 (329)
56 PRK08170 acetyl-CoA acetyltran 75.7 4.4 9.5E-05 30.0 3.6 31 72-107 27-57 (426)
57 TIGR00747 fabH 3-oxoacyl-(acyl 75.7 3.8 8.3E-05 28.6 3.2 20 72-91 51-70 (318)
58 cd00829 SCP-x_thiolase Thiolas 75.4 3.7 8.1E-05 29.5 3.1 31 72-107 16-46 (375)
59 TIGR00748 HMG_CoA_syn_Arc hydr 75.2 3.6 7.8E-05 29.5 3.0 20 72-91 50-69 (345)
60 PRK09051 beta-ketothiolase; Pr 74.9 4.9 0.00011 29.5 3.6 31 72-107 27-57 (394)
61 PRK06366 acetyl-CoA acetyltran 74.2 5.4 0.00012 29.1 3.7 30 72-106 26-55 (388)
62 cd00831 CHS_like Chalcone and 74.1 3.6 7.8E-05 29.5 2.8 24 68-91 81-104 (361)
63 PRK07108 acetyl-CoA acetyltran 73.3 4.9 0.00011 29.4 3.3 31 72-107 27-57 (392)
64 PLN02326 3-oxoacyl-[acyl-carri 73.3 4.5 9.8E-05 29.3 3.1 20 72-91 96-115 (379)
65 PRK07937 lipid-transfer protei 72.8 5.3 0.00012 28.9 3.4 23 73-96 25-47 (352)
66 PRK12879 3-oxoacyl-(acyl carri 72.6 4.6 0.0001 28.3 3.0 20 72-91 53-72 (325)
67 cd00830 KAS_III Ketoacyl-acyl 72.4 4.8 0.0001 28.0 3.1 20 72-91 50-69 (320)
68 PRK08235 acetyl-CoA acetyltran 71.6 6.4 0.00014 28.8 3.6 31 72-107 26-56 (393)
69 PRK08304 stage V sporulation p 71.5 4.8 0.0001 29.1 2.9 20 72-91 56-75 (337)
70 PLN03169 chalcone synthase fam 71.4 5.4 0.00012 29.2 3.2 21 71-91 105-125 (391)
71 PRK06157 acetyl-CoA acetyltran 71.3 6.3 0.00014 28.9 3.5 30 72-106 27-56 (398)
72 PRK09258 3-oxoacyl-(acyl carri 71.2 5.3 0.00011 28.2 3.1 20 72-91 61-80 (338)
73 PRK04262 hypothetical protein; 70.5 5.4 0.00012 28.5 3.0 20 72-91 51-70 (347)
74 PRK06065 acetyl-CoA acetyltran 70.1 6.3 0.00014 28.9 3.3 20 72-91 29-48 (392)
75 PRK06158 thiolase; Provisional 69.9 6.3 0.00014 28.7 3.3 20 72-91 28-47 (384)
76 PTZ00455 3-ketoacyl-CoA thiola 69.9 8.3 0.00018 28.8 3.9 20 72-91 48-67 (438)
77 PRK08313 acetyl-CoA acetyltran 69.8 6.5 0.00014 28.7 3.3 20 72-91 24-43 (386)
78 PRK05963 3-oxoacyl-(acyl carri 69.8 6 0.00013 27.8 3.1 20 72-91 52-71 (326)
79 PRK06059 lipid-transfer protei 69.7 5.4 0.00012 29.1 2.9 20 72-91 23-42 (399)
80 CHL00203 fabH 3-oxoacyl-acyl-c 68.4 6.4 0.00014 27.8 3.0 20 72-91 51-70 (326)
81 PRK06954 acetyl-CoA acetyltran 68.3 8 0.00017 28.3 3.5 31 72-107 31-61 (397)
82 TIGR02845 spore_V_AD stage V s 68.3 6.1 0.00013 28.5 2.8 20 72-91 50-69 (327)
83 PLN02644 acetyl-CoA C-acetyltr 68.2 7.7 0.00017 28.4 3.4 30 72-106 25-54 (394)
84 PRK07801 acetyl-CoA acetyltran 68.1 8.2 0.00018 28.0 3.5 30 72-106 26-55 (382)
85 PF02801 Ketoacyl-synt_C: Beta 67.4 6.2 0.00014 23.6 2.4 26 77-108 28-53 (119)
86 PRK06840 hypothetical protein; 66.3 8 0.00017 27.4 3.1 20 72-91 53-72 (339)
87 PLN02577 hydroxymethylglutaryl 65.6 8 0.00017 29.2 3.1 31 72-108 53-84 (459)
88 PRK12404 stage V sporulation p 63.7 8.6 0.00019 27.8 2.8 19 73-91 55-73 (334)
89 PLN02287 3-ketoacyl-CoA thiola 63.6 11 0.00024 28.2 3.6 31 72-107 71-101 (452)
90 PRK09052 acetyl-CoA acetyltran 63.5 12 0.00026 27.5 3.7 32 72-108 31-63 (399)
91 PRK07851 acetyl-CoA acetyltran 63.0 12 0.00027 27.5 3.6 29 73-106 28-57 (406)
92 PLN02932 3-ketoacyl-CoA syntha 60.8 11 0.00023 28.7 3.0 23 69-91 145-167 (478)
93 PLN02377 3-ketoacyl-CoA syntha 60.2 11 0.00025 28.7 3.1 33 70-108 170-202 (502)
94 COG3425 PksG 3-hydroxy-3-methy 60.2 10 0.00022 27.9 2.7 31 72-108 51-82 (377)
95 PRK06816 3-oxoacyl-(acyl carri 59.5 11 0.00025 27.3 2.9 20 72-91 63-82 (378)
96 PRK08131 acetyl-CoA acetyltran 58.4 17 0.00036 26.8 3.7 30 73-107 27-56 (401)
97 PRK08257 acetyl-CoA acetyltran 56.9 19 0.00042 27.3 3.9 19 72-90 27-45 (498)
98 cd00826 nondecarbox_cond_enzym 56.2 17 0.00036 26.7 3.3 32 71-107 22-53 (393)
99 cd00827 init_cond_enzymes "ini 56.1 15 0.00033 25.6 3.1 20 72-91 48-67 (324)
100 PRK06633 acetyl-CoA acetyltran 56.0 13 0.00028 27.3 2.8 31 72-107 27-57 (392)
101 PRK08963 fadI 3-ketoacyl-CoA t 54.6 20 0.00043 26.6 3.6 31 72-107 29-59 (428)
102 PRK08242 acetyl-CoA acetyltran 53.4 15 0.00033 27.1 2.8 20 72-91 28-47 (402)
103 CHL00020 psbN photosystem II p 50.0 1.7 3.7E-05 21.7 -1.8 19 4-22 16-34 (43)
104 PRK06066 acetyl-CoA acetyltran 49.5 23 0.0005 26.0 3.2 20 72-91 25-45 (385)
105 TIGR02446 FadI fatty oxidation 49.0 29 0.00063 25.8 3.7 31 72-107 31-61 (430)
106 PRK07661 acetyl-CoA acetyltran 48.9 36 0.00077 25.0 4.1 31 72-107 27-57 (391)
107 PRK08142 acetyl-CoA acetyltran 48.3 16 0.00034 26.8 2.2 20 72-91 25-44 (388)
108 PLN02192 3-ketoacyl-CoA syntha 48.0 23 0.00051 27.1 3.1 21 71-91 175-195 (511)
109 PRK13183 psbN photosystem II r 47.8 1.6 3.4E-05 22.1 -2.1 19 4-22 19-37 (46)
110 PRK07855 lipid-transfer protei 47.7 16 0.00036 26.7 2.2 20 72-91 24-43 (386)
111 PRK07850 acetyl-CoA acetyltran 47.3 30 0.00066 25.3 3.5 29 73-106 27-55 (387)
112 PRK13196 pyrrolidone-carboxyla 44.9 31 0.00067 23.2 3.0 29 1-29 1-29 (211)
113 PRK06365 acetyl-CoA acetyltran 44.5 29 0.00063 25.8 3.1 20 72-91 37-56 (430)
114 PRK13197 pyrrolidone-carboxyla 44.4 33 0.00071 23.1 3.1 26 1-26 1-27 (215)
115 TIGR01833 HMG-CoA-S_euk 3-hydr 44.0 24 0.00052 26.6 2.6 20 72-91 50-69 (454)
116 PF11248 DUF3046: Protein of u 40.9 13 0.00029 20.1 0.7 27 4-30 26-57 (63)
117 PF00108 Thiolase_N: Thiolase, 40.8 37 0.00081 23.4 3.0 32 72-108 26-57 (264)
118 COG3424 BcsA Predicted naringe 36.5 49 0.0011 24.0 3.0 36 69-109 73-108 (356)
119 PRK06504 acetyl-CoA acetyltran 36.2 58 0.0013 23.9 3.6 19 73-91 27-45 (390)
120 PRK08118 topology modulation p 34.5 56 0.0012 20.8 2.9 24 1-29 1-24 (167)
121 TIGR02863 spore_sspJ small, ac 34.0 24 0.00052 17.5 0.9 11 79-89 19-29 (47)
122 PHA03297 envelope glycoprotein 33.7 68 0.0015 20.7 3.1 32 74-105 122-153 (185)
123 TIGR01226 phe_am_lyase phenyla 32.6 22 0.00048 28.3 1.0 30 79-108 209-239 (680)
124 TIGR03832 Tyr_2_3_mutase tyros 32.3 20 0.00044 27.5 0.7 30 79-108 166-195 (507)
125 PLN02457 phenylalanine ammonia 32.1 27 0.00057 28.0 1.3 30 79-108 223-254 (706)
126 PF08747 DUF1788: Domain of un 31.6 26 0.00057 21.6 1.0 24 4-28 65-88 (126)
127 KOG1406|consensus 31.0 28 0.00061 24.7 1.2 33 74-107 31-63 (408)
128 PF02468 PsbN: Photosystem II 30.3 1.7 3.7E-05 21.7 -3.6 18 4-21 16-33 (43)
129 PF09314 DUF1972: Domain of un 29.9 86 0.0019 20.7 3.2 30 1-30 1-30 (185)
130 COG4032 Predicted thiamine-pyr 29.5 46 0.001 21.3 1.8 13 78-90 8-20 (172)
131 PLN00415 3-ketoacyl-CoA syntha 29.5 70 0.0015 24.4 3.1 20 72-91 133-153 (466)
132 PF02495 7kD_coat: 7kD viral c 28.7 61 0.0013 17.0 2.0 23 4-26 29-51 (59)
133 cd04444 DEP_PLEK2 DEP (Disheve 28.6 69 0.0015 19.4 2.4 22 18-39 1-22 (109)
134 PRK13195 pyrrolidone-carboxyla 28.5 79 0.0017 21.5 3.0 19 1-19 1-19 (222)
135 PF10662 PduV-EutP: Ethanolami 28.2 1.1E+02 0.0025 19.3 3.5 30 1-35 1-30 (143)
136 COG2986 HutH Histidine ammonia 28.1 43 0.00093 25.6 1.7 30 79-108 171-200 (498)
137 cd00332 PAL-HAL Phenylalanine 28.1 23 0.0005 26.7 0.4 30 79-108 163-192 (444)
138 TIGR02430 pcaF beta-ketoadipyl 27.1 80 0.0017 23.3 3.0 31 72-107 25-56 (400)
139 PF03658 Ub-RnfH: RnfH family 26.6 49 0.0011 19.0 1.5 25 79-103 25-52 (84)
140 PRK09367 histidine ammonia-lya 26.1 24 0.00053 27.0 0.2 30 79-108 171-200 (500)
141 PLN02854 3-ketoacyl-CoA syntha 26.1 86 0.0019 24.3 3.1 31 71-107 187-217 (521)
142 PF06406 StbA: StbA protein; 25.8 1.1E+02 0.0023 21.8 3.4 27 73-105 75-101 (318)
143 PRK09050 beta-ketoadipyl CoA t 25.6 95 0.0021 22.9 3.2 31 72-107 26-57 (401)
144 COG2732 Barstar, RNAse (barnas 25.1 55 0.0012 19.0 1.5 16 15-30 31-46 (91)
145 PRK09268 acetyl-CoA acetyltran 24.4 71 0.0015 23.8 2.3 30 72-106 31-60 (427)
146 cd05143 Barstar_SaI14_like Bar 24.4 65 0.0014 18.6 1.7 16 15-30 29-44 (88)
147 PRK06217 hypothetical protein; 23.6 92 0.002 19.9 2.5 25 1-30 1-25 (183)
148 COG0504 PyrG CTP synthase (UTP 22.9 89 0.0019 24.2 2.6 28 2-30 2-30 (533)
149 TIGR01225 hutH histidine ammon 22.2 30 0.00066 26.5 0.1 30 79-108 168-197 (506)
150 TIGR02445 fadA fatty oxidation 21.7 1.3E+02 0.0028 22.0 3.2 30 72-106 25-55 (385)
151 PF08392 FAE1_CUT1_RppA: FAE1/ 20.7 1.5E+02 0.0033 21.1 3.3 22 70-91 81-102 (290)
152 cd05142 Barstar Barstar is an 20.6 85 0.0018 17.9 1.7 15 15-29 29-43 (87)
153 PF09550 DUF2376: Conserved hy 20.2 83 0.0018 15.6 1.4 9 16-24 2-10 (43)
154 COG1121 ZnuC ABC-type Mn/Zn tr 20.0 3.2E+02 0.0069 19.1 6.5 82 9-90 33-130 (254)
No 1
>KOG1394|consensus
Probab=99.95 E-value=1.4e-27 Score=165.84 Aligned_cols=109 Identities=37% Similarity=0.655 Sum_probs=101.8
Q ss_pred CCcEEEEecceeCCCCCCHHHHHHHHHcCCCceeeCCCCCcCCCCcceeeecCCCCcCCCCChHhhhcCCHHHHHHHHHH
Q psy5298 1 MKRVVVTGLGIVSPVGTTRQSAWNAIKEGKACVSPLSEPEYSKLPCKIAARIEGLDLTAQFTQSKLRTMSRATAFSLIAT 80 (109)
Q Consensus 1 ~~~V~ItG~g~vs~lG~~~~~~~~~l~~g~s~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~al~a~ 80 (109)
|+||||||||+|+|||+++.++|++|++|+|||+.+..++...+++..+|.|+.|+.+.++...+.+.|+.+.+|++.|+
T Consensus 23 ~rRVVITGmG~VTplG~~v~~~w~~Ll~GesGI~~l~~~d~k~~p~~v~g~Ip~f~~e~~~s~~~~r~ms~~~~~al~aa 102 (440)
T KOG1394|consen 23 MRRVVITGMGAVTPLGNGVHTSWRNLLSGESGISSLEGPDYKSIPFTVAGKIPRFSVEDYVSKGDERRMSKFTKLALTAA 102 (440)
T ss_pred ceeEEEeccceeecCCCChHHHHHHhhccccCcccccccccccCcchheeeccccccccccchhhhhhhhHHHHHHHHHH
Confidence 68999999999999999999999999999999999998888889999999999999888899999999999999999999
Q ss_pred HHHHHHcCCCCC--CCCCCCceEEEEeecCC
Q psy5298 81 REALADAKWNPQ--NEKQKERTGVAVGTGMI 109 (109)
Q Consensus 81 ~eAl~~agl~~~--~~~~~~r~gv~iGt~~~ 109 (109)
.|||+|++|.+. +..+..++||.||++++
T Consensus 103 ~eAL~da~~~~~~~~e~dk~~~GV~iGtgmg 133 (440)
T KOG1394|consen 103 EEALKDAGLLDVNLSEEDKEKTGVLIGTGMG 133 (440)
T ss_pred HHHHHhcCCCCcccchhhhhhhceEeccccc
Confidence 999999999864 45678999999999875
No 2
>PRK07314 3-oxoacyl-(acyl carrier protein) synthase II; Reviewed
Probab=99.93 E-value=1.7e-25 Score=160.98 Aligned_cols=107 Identities=33% Similarity=0.620 Sum_probs=99.6
Q ss_pred CCcEEEEecceeCCCCCCHHHHHHHHHcCCCceeeCCCCCcCCCCcceeeecCCCCcCCCCChHhhhcCCHHHHHHHHHH
Q psy5298 1 MKRVVVTGLGIVSPVGTTRQSAWNAIKEGKACVSPLSEPEYSKLPCKIAARIEGLDLTAQFTQSKLRTMSRATAFSLIAT 80 (109)
Q Consensus 1 ~~~V~ItG~g~vs~lG~~~~~~~~~l~~g~s~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~al~a~ 80 (109)
|++|+|||||+++|+|.+++++|++|++|+++++++++|+...++..++|.+++|+++.+++++..+.||++.+|++.++
T Consensus 1 m~~v~ItG~g~~~p~g~~~~~~w~~l~~g~~~~~~~~~~~~~~~~~~~~g~i~~f~~~~~~~~~~~~~~~~~~~l~~~aa 80 (411)
T PRK07314 1 KRRVVVTGLGAVSPLGNDVESTWKNLLAGKSGIGPITHFDTSDLAVKIAGEVKDFNPDDYMSRKEARRMDRFIQYGIAAA 80 (411)
T ss_pred CCcEEEEcceEECCCcCCHHHHHHHHHhCCCcEEECCcccccCCCccEEEEeCCcChhhcCCHHHhhcCCHHHHHHHHHH
Confidence 89999999999999999999999999999999999998887778888899999999888889999999999999999999
Q ss_pred HHHHHHcCCCCCCCCCCCceEEEEeecC
Q psy5298 81 REALADAKWNPQNEKQKERTGVAVGTGM 108 (109)
Q Consensus 81 ~eAl~~agl~~~~~~~~~r~gv~iGt~~ 108 (109)
++||+|||+.+ ++.+..|+||++|++.
T Consensus 81 ~~Al~dAGl~~-~~~~~~~~gv~~g~~~ 107 (411)
T PRK07314 81 KQAVEDAGLEI-TEENADRIGVIIGSGI 107 (411)
T ss_pred HHHHHHcCCCc-ccCCcccEEEEEecCc
Confidence 99999999986 5677899999999864
No 3
>PRK09116 3-oxoacyl-(acyl carrier protein) synthase II; Reviewed
Probab=99.93 E-value=1.9e-25 Score=160.69 Aligned_cols=109 Identities=32% Similarity=0.460 Sum_probs=96.0
Q ss_pred CCcEEEEecceeCCCCCCHHHHHHHHHcCCCceeeCCCCCc-CCCCcceeeecCCCCcCCCCChHhhhcCCHHHHHHHHH
Q psy5298 1 MKRVVVTGLGIVSPVGTTRQSAWNAIKEGKACVSPLSEPEY-SKLPCKIAARIEGLDLTAQFTQSKLRTMSRATAFSLIA 79 (109)
Q Consensus 1 ~~~V~ItG~g~vs~lG~~~~~~~~~l~~g~s~i~~~~~~~~-~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~al~a 79 (109)
|+||||||||+++|+|.+.+++|++|++|+++|+++++|+. ..+++.+++.+++|++.++++++..+.|++..+|++.|
T Consensus 1 m~~VvITG~g~vtp~G~~~~~~~~~L~~g~s~i~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~r~~~~~~~~al~a 80 (405)
T PRK09116 1 MRRVVVTGMGGVTALGEDWQTIAARLKAGRNAVRRMPEWDRYDGLNTRLAAPIDDFELPAHYTRKKIRSMGRVSLMATRA 80 (405)
T ss_pred CCCEEEEeeEEECCCCCCHHHHHHHHHcCCCCEEeCCchhhccCCCCceEEEecCcChhHhcCHHHHhhCCHHHHHHHHH
Confidence 78999999999999999999999999999999999998753 46788889999988877777888889999999999999
Q ss_pred HHHHHHHcCCCCCCCCCCCceEEEEeecCC
Q psy5298 80 TREALADAKWNPQNEKQKERTGVAVGTGMI 109 (109)
Q Consensus 80 ~~eAl~~agl~~~~~~~~~r~gv~iGt~~~ 109 (109)
++|||+|||+........+|+||++|++.+
T Consensus 81 a~~Al~dAGl~~~~~~~~~r~Gv~~Gt~~g 110 (405)
T PRK09116 81 SELALEDAGLLGDPILTDGRMGIAYGSSTG 110 (405)
T ss_pred HHHHHHHcCCCCccccCCCcEEEEEeeccc
Confidence 999999999853233457899999998753
No 4
>PRK08439 3-oxoacyl-(acyl carrier protein) synthase II; Reviewed
Probab=99.93 E-value=4.1e-25 Score=159.03 Aligned_cols=107 Identities=34% Similarity=0.571 Sum_probs=98.6
Q ss_pred CCcEEEEecceeCCCCCCHHHHHHHHHcCCCceeeCCCCCcCCCCcceeeecCCCCcCCCCChHhhhcCCHHHHHHHHHH
Q psy5298 1 MKRVVVTGLGIVSPVGTTRQSAWNAIKEGKACVSPLSEPEYSKLPCKIAARIEGLDLTAQFTQSKLRTMSRATAFSLIAT 80 (109)
Q Consensus 1 ~~~V~ItG~g~vs~lG~~~~~~~~~l~~g~s~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~al~a~ 80 (109)
|+||+|||||+++|+|++++++|++|++|+++|+++++|+...+++.++|.+++|++..+++++..+.+++..+|++.++
T Consensus 1 m~~v~ItG~g~vsp~G~~~~~~~~~L~~G~s~i~~~~~~~~~~~~~~~~g~i~~f~~~~~~~~~~~~~~~~~~~l~~~Aa 80 (406)
T PRK08439 1 MKRVVVTGIGMINSLGLNKESSFKAICNGECGIKKITLFDASDFPVQIAGEITDFDPTEVMDPKEVKKADRFIQLGLKAA 80 (406)
T ss_pred CCCEEEEeeEEECCCcCCHHHHHHHHHcCCCceEeCCCccccCCCCceeEEcCCcChhhcCCHHHHhhcCHHHHHHHHHH
Confidence 79999999999999999999999999999999999998887778888899999999877788888899999999999999
Q ss_pred HHHHHHcCCCCCCCCCCCceEEEEeecC
Q psy5298 81 REALADAKWNPQNEKQKERTGVAVGTGM 108 (109)
Q Consensus 81 ~eAl~~agl~~~~~~~~~r~gv~iGt~~ 108 (109)
+|||+|||+++ ...+..|+|+++|++.
T Consensus 81 ~~AL~dAGl~~-~~~~~~r~Gv~~g~~~ 107 (406)
T PRK08439 81 REAMKDAGFLP-EELDAERFGVSSASGI 107 (406)
T ss_pred HHHHHHcCCCc-ccCCCCCEEEEEecCC
Confidence 99999999985 5667889999999864
No 5
>PRK07967 3-oxoacyl-(acyl carrier protein) synthase I; Reviewed
Probab=99.93 E-value=5.6e-25 Score=158.30 Aligned_cols=106 Identities=31% Similarity=0.518 Sum_probs=95.8
Q ss_pred CCcEEEEecceeCCCCCCHHHHHHHHHcCCCceeeCCCCCcCCCCcceeeecCCCCcCCCCChHhhhcCCHHHHHHHHHH
Q psy5298 1 MKRVVVTGLGIVSPVGTTRQSAWNAIKEGKACVSPLSEPEYSKLPCKIAARIEGLDLTAQFTQSKLRTMSRATAFSLIAT 80 (109)
Q Consensus 1 ~~~V~ItG~g~vs~lG~~~~~~~~~l~~g~s~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~al~a~ 80 (109)
|+||||||||+++|+|++.+++|++|++|+++|++.++++...+++.+.|+++ |++.++++++..+.+++..++++.|+
T Consensus 1 m~rVvITG~G~vsp~G~~~~~~w~~l~~G~sgi~~~~~~~~~~~~~~~~g~~~-~~~~~~~~~~~~~~~~r~~~~a~~aa 79 (406)
T PRK07967 1 MRRVVITGLGIVSSIGNNQQEVLASLREGRSGITFSPEFAEMGMRSQVWGNVK-LDPTGLIDRKVMRFMGDASAYAYLAM 79 (406)
T ss_pred CCcEEEEcceEECCCCCCHHHHHHHHHcCCCceeECCcccccCCCCceEEEcC-CChhhcCCHHHhhcCCHHHHHHHHHH
Confidence 79999999999999999999999999999999999999887788888889875 77766777788889999999999999
Q ss_pred HHHHHHcCCCCCCCCCCCceEEEEeecC
Q psy5298 81 REALADAKWNPQNEKQKERTGVAVGTGM 108 (109)
Q Consensus 81 ~eAl~~agl~~~~~~~~~r~gv~iGt~~ 108 (109)
+|||+|||+.+ ......|+||++|++.
T Consensus 80 ~~Al~dAGl~~-~~~~~~rvGv~~gs~~ 106 (406)
T PRK07967 80 EQAIADAGLSE-EQVSNPRTGLIAGSGG 106 (406)
T ss_pred HHHHHHcCCCC-ccCCCCCEEEEEecCC
Confidence 99999999975 4567789999999875
No 6
>PRK08722 3-oxoacyl-(acyl carrier protein) synthase II; Reviewed
Probab=99.93 E-value=5.3e-25 Score=158.79 Aligned_cols=107 Identities=28% Similarity=0.533 Sum_probs=97.8
Q ss_pred CcEEEEecceeCCCCCCHHHHHHHHHcCCCceeeCCCCCcCCCCcceeeecCCCCcCCCCChHhhhcCCHHHHHHHHHHH
Q psy5298 2 KRVVVTGLGIVSPVGTTRQSAWNAIKEGKACVSPLSEPEYSKLPCKIAARIEGLDLTAQFTQSKLRTMSRATAFSLIATR 81 (109)
Q Consensus 2 ~~V~ItG~g~vs~lG~~~~~~~~~l~~g~s~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~al~a~~ 81 (109)
+||+|||||+++|+|++++++|++|++|+++|+++++|+...++..++|.+++|+++.+++++..+.||+..++++.+++
T Consensus 4 ~~VvItG~g~~~p~g~~~~~~w~~L~~g~s~i~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~~~~d~~~~~~l~a~~ 83 (414)
T PRK08722 4 RRVVVTGMGMLSPVGNTVESSWKALLAGQSGIVNIEHFDTTNFSTRFAGLVKDFNCEEYMSKKDARKMDLFIQYGIAAGI 83 (414)
T ss_pred CCEEEEeeEEECCCCCCHHHHHHHHHhCCCeeeecCccccccCCCceeEEcCCCChhHcCCHHHHhhcCHHHHHHHHHHH
Confidence 58999999999999999999999999999999999998877888889999999998777888888999999999999999
Q ss_pred HHHHHcCCCCCCCCCCCceEEEEeecCC
Q psy5298 82 EALADAKWNPQNEKQKERTGVAVGTGMI 109 (109)
Q Consensus 82 eAl~~agl~~~~~~~~~r~gv~iGt~~~ 109 (109)
|||+|||+.+ ...+..|+||++|++.+
T Consensus 84 ~Al~dAGl~~-~~~~~~r~Gv~vGt~~g 110 (414)
T PRK08722 84 QALDDSGLEV-TEENAHRIGVAIGSGIG 110 (414)
T ss_pred HHHHHcCCCc-cccCCCCEEEEEeeCCC
Confidence 9999999974 44567899999999753
No 7
>cd00832 CLF Chain-length factor (CLF) is a factor required for polyketide chain initiation of aromatic antibiotic-producing polyketide synthases (PKSs) of filamentous bacteria. CLFs have been shown to have decarboxylase activity towards malonyl-acyl carrier protein (ACP). CLFs are similar to other elongation ketosynthase domains, but their active site cysteine is replaced by a conserved glutamine.
Probab=99.93 E-value=5.3e-25 Score=158.19 Aligned_cols=107 Identities=28% Similarity=0.470 Sum_probs=97.4
Q ss_pred CcEEEEecceeCCCCCCHHHHHHHHHcCCCceeeCCCCCcCCCCcceeeecCCCCcCCCCChHhhhcCCHHHHHHHHHHH
Q psy5298 2 KRVVVTGLGIVSPVGTTRQSAWNAIKEGKACVSPLSEPEYSKLPCKIAARIEGLDLTAQFTQSKLRTMSRATAFSLIATR 81 (109)
Q Consensus 2 ~~V~ItG~g~vs~lG~~~~~~~~~l~~g~s~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~al~a~~ 81 (109)
+||+|||||+++|+|.+++++|++|++|+++++++++|+...+++.+.+.+++|++.++++++..+.||+..+|++.+++
T Consensus 1 ~~VvItG~G~vsp~G~~~~~~w~~L~~G~s~i~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~~~~d~~~~~~l~aa~ 80 (399)
T cd00832 1 RRAVVTGIGVVAPNGLGVEEYWKAVLDGRSGLGPITRFDPSGYPARLAGEVPDFDAAEHLPGRLLPQTDRMTRLALAAAD 80 (399)
T ss_pred CCEEEEeeEEeCCCCCCHHHHHHHHHhCCCeEeeCCccccccCCCceeEEeCCcChhhcCCHHHHhhCCHHHHHHHHHHH
Confidence 58999999999999999999999999999999999988777778888899999987777888889999999999999999
Q ss_pred HHHHHcCCCCCCCCCCCceEEEEeecCC
Q psy5298 82 EALADAKWNPQNEKQKERTGVAVGTGMI 109 (109)
Q Consensus 82 eAl~~agl~~~~~~~~~r~gv~iGt~~~ 109 (109)
|||+|||+++ ...+..|+||++|++.+
T Consensus 81 eAl~dAGl~~-~~~~~~r~Gv~~Gt~~g 107 (399)
T cd00832 81 WALADAGVDP-AALPPYDMGVVTASAAG 107 (399)
T ss_pred HHHHHcCCCc-cccCCCceEEEEccCCc
Confidence 9999999985 45678899999998753
No 8
>PRK07103 polyketide beta-ketoacyl:acyl carrier protein synthase; Validated
Probab=99.91 E-value=5.7e-24 Score=153.28 Aligned_cols=105 Identities=32% Similarity=0.462 Sum_probs=91.6
Q ss_pred CCcEEEEecceeCCCCCCHHHHHHHHHcCCCceeeCCCCCcC--------CCCcceeeecCCCCcCCCCChHhhhcCCHH
Q psy5298 1 MKRVVVTGLGIVSPVGTTRQSAWNAIKEGKACVSPLSEPEYS--------KLPCKIAARIEGLDLTAQFTQSKLRTMSRA 72 (109)
Q Consensus 1 ~~~V~ItG~g~vs~lG~~~~~~~~~l~~g~s~i~~~~~~~~~--------~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~ 72 (109)
|+||||||||+++|+|.+++++|++|++|++++++++.+... .....++++++++++.++++++..+.+++.
T Consensus 1 m~~VvItG~g~vsp~g~~~~~~w~~l~~g~s~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~ 80 (410)
T PRK07103 1 MDEVVVTGVGVVSAIGQGRPSFAAALLAGRHAFGVMRRPGRQVPDDAGAGLASAFIGAELDSLALPERLDAKLLRRASLS 80 (410)
T ss_pred CCCEEEEcceEECCCcCCHHHHHHHHHcCCCeEecCCcccccccccccccCCCceEEEEeCCCChhhcCCHHHhhcCCHH
Confidence 899999999999999999999999999999999999876432 234567889998887777888888999999
Q ss_pred HHHHHHHHHHHHHHcCCCCCCCCCCCceEEEEeecC
Q psy5298 73 TAFSLIATREALADAKWNPQNEKQKERTGVAVGTGM 108 (109)
Q Consensus 73 ~~~al~a~~eAl~~agl~~~~~~~~~r~gv~iGt~~ 108 (109)
.++++.+++|||+|||+.+ .+.+|+||++|++.
T Consensus 81 ~~lal~Aa~eAl~dAgl~~---~~~~riGvivG~~~ 113 (410)
T PRK07103 81 AQAALAAAREAWRDAALGP---VDPDRIGLVVGGSN 113 (410)
T ss_pred HHHHHHHHHHHHHhcCcCC---CCCCCEEEEEccCC
Confidence 9999999999999999853 35789999999764
No 9
>PRK06333 3-oxoacyl-(acyl carrier protein) synthase II; Reviewed
Probab=99.91 E-value=9.3e-24 Score=152.55 Aligned_cols=107 Identities=33% Similarity=0.621 Sum_probs=95.6
Q ss_pred CCcEEEEecceeCCCCCCHHHHHHHHHcCCCceeeCCCCCcCCCCcceeeecCC--------CCcCCCCChHhhhcCCHH
Q psy5298 1 MKRVVVTGLGIVSPVGTTRQSAWNAIKEGKACVSPLSEPEYSKLPCKIAARIEG--------LDLTAQFTQSKLRTMSRA 72 (109)
Q Consensus 1 ~~~V~ItG~g~vs~lG~~~~~~~~~l~~g~s~i~~~~~~~~~~~~~~~~~~i~~--------~~~~~~~~~~~~~~~~~~ 72 (109)
|++|+|||+|+++|+|.+++++|++|++|++++++++.+....++..++|.+++ |++..+++++..+.||++
T Consensus 3 ~~~V~ItG~g~~~p~g~~~~~~w~~l~~G~s~i~~~~~~~~~~~~~~~~g~i~~~~~~~~~~fd~~~~i~~~~~~~~d~~ 82 (424)
T PRK06333 3 KKRIVVTGMGAVSPLGCGVETFWQRLLAGQSGIRTLTDFPVGDLATKIGGQVPDLAEDAEAGFDPDRYLDPKDQRKMDRF 82 (424)
T ss_pred CCCEEEEcceEECCCCCCHHHHHHHHHcCCCeEEeCCcccccCCCCceEEEeccccccccccCChhHcCCHHHHhhcCHH
Confidence 579999999999999999999999999999999999987666677888899987 777667888889999999
Q ss_pred HHHHHHHHHHHHHHcCCCCCCCC-CCCceEEEEeecC
Q psy5298 73 TAFSLIATREALADAKWNPQNEK-QKERTGVAVGTGM 108 (109)
Q Consensus 73 ~~~al~a~~eAl~~agl~~~~~~-~~~r~gv~iGt~~ 108 (109)
.++++.+++|||+|||+.+ ... +..|+||++|++.
T Consensus 83 ~~l~~~aa~~Al~dAgl~~-~~~~~~~~~Gv~~g~~~ 118 (424)
T PRK06333 83 ILFAMAAAKEALAQAGWDP-DTLEDRERTATIIGSGV 118 (424)
T ss_pred HHHHHHHHHHHHHhcCCCc-cccCCcccEEEEEecCc
Confidence 9999999999999999985 343 6789999999875
No 10
>PLN02787 3-oxoacyl-[acyl-carrier-protein] synthase II
Probab=99.91 E-value=5.9e-24 Score=157.16 Aligned_cols=108 Identities=31% Similarity=0.500 Sum_probs=97.0
Q ss_pred CcEEEEecceeCCCCCCHHHHHHHHHcCCCceeeCCCCCcCCCCcceeeecCCCCcCCCCChHhhhcCCHHHHHHHHHHH
Q psy5298 2 KRVVVTGLGIVSPVGTTRQSAWNAIKEGKACVSPLSEPEYSKLPCKIAARIEGLDLTAQFTQSKLRTMSRATAFSLIATR 81 (109)
Q Consensus 2 ~~V~ItG~g~vs~lG~~~~~~~~~l~~g~s~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~al~a~~ 81 (109)
+||||||||+++|+|.+++++|++|++|+++|+++++|+...++..++|++++|++..+++++..+.||+..++++.+++
T Consensus 129 ~rVvITG~G~vtp~G~~~~~~w~~L~~G~s~i~~~~~f~~~~~~~~~ag~i~~f~~~~~l~~k~~r~md~~~~~al~Aa~ 208 (540)
T PLN02787 129 RRVVVTGMGVVSPLGHDPDVFYNNLLEGVSGISEIERFDCSQFPTRIAGEIKSFSTDGWVAPKLSKRMDKFMLYLLTAGK 208 (540)
T ss_pred CCEEEEeeEEECCCCCCHHHHHHHHHcCCCcccccCccchhhCCccccccccccChhhcCCHHHHHhCCHHHHHHHHHHH
Confidence 58999999999999999999999999999999999998877788888899998887777888999999999999999999
Q ss_pred HHHHHcCCCCC--CCCCCCceEEEEeecCC
Q psy5298 82 EALADAKWNPQ--NEKQKERTGVAVGTGMI 109 (109)
Q Consensus 82 eAl~~agl~~~--~~~~~~r~gv~iGt~~~ 109 (109)
|||+|||+.+. +..++.|+||++|++.+
T Consensus 209 eAL~dAGl~~~~~~~~~~~r~GV~vGt~~g 238 (540)
T PLN02787 209 KALADGGITEDVMKELDKTKCGVLIGSAMG 238 (540)
T ss_pred HHHHHcCCCcccccccCCCceEEEEEeccc
Confidence 99999999741 14567899999999753
No 11
>TIGR03150 fabF beta-ketoacyl-acyl-carrier-protein synthase II. FabB sequences should fall well below the noise cutoff of this model.
Probab=99.91 E-value=2.3e-23 Score=149.44 Aligned_cols=106 Identities=35% Similarity=0.651 Sum_probs=97.9
Q ss_pred CcEEEEecceeCCCCCCHHHHHHHHHcCCCceeeCCCCCcCCCCcceeeecCCCCcCCCCChHhhhcCCHHHHHHHHHHH
Q psy5298 2 KRVVVTGLGIVSPVGTTRQSAWNAIKEGKACVSPLSEPEYSKLPCKIAARIEGLDLTAQFTQSKLRTMSRATAFSLIATR 81 (109)
Q Consensus 2 ~~V~ItG~g~vs~lG~~~~~~~~~l~~g~s~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~al~a~~ 81 (109)
++|+|||+|+++|+|.+.+++|++|++|++++++++.|+....+..+.|++++|++..+++++..+.|+++.++++.+++
T Consensus 1 ~~v~ItG~g~~~p~g~~~~~~~~~l~~g~s~~~~~~~~~~~~~~~~~~g~i~~f~~~~~~~~~~~~~~~~~~~l~~~aa~ 80 (407)
T TIGR03150 1 RRVVVTGLGAVTPLGNGVEEFWENLLAGKSGIGPITRFDASDLPVKIAGEVKDFDPEDYIDKKEARRMDRFIQYALAAAK 80 (407)
T ss_pred CcEEEEcceEECCCcCCHHHHHHHHHcCCCeeEECCcccccCCCCcEEEEeCCcChhhcCCHHHHhhcCHHHHHHHHHHH
Confidence 58999999999999999999999999999999999988777778888999999998877889999999999999999999
Q ss_pred HHHHHcCCCCCCCCCCCceEEEEeecC
Q psy5298 82 EALADAKWNPQNEKQKERTGVAVGTGM 108 (109)
Q Consensus 82 eAl~~agl~~~~~~~~~r~gv~iGt~~ 108 (109)
+||+|||+.+ ...+..++|+++|++.
T Consensus 81 ~Al~dAgl~~-~~~~~~~~gv~~g~~~ 106 (407)
T TIGR03150 81 EAVEDSGLDI-EEEDAERVGVIIGSGI 106 (407)
T ss_pred HHHHhcCCCc-ccCCccceEEEEecCC
Confidence 9999999986 5677899999999864
No 12
>PF00109 ketoacyl-synt: Beta-ketoacyl synthase, N-terminal domain; InterPro: IPR014030 Beta-ketoacyl-ACP synthase 2.3.1.41 from EC (KAS) [] is the enzyme that catalyzes the condensation of malonyl-ACP with the growing fatty acid chain. It is found as a component of a number of enzymatic systems, including fatty acid synthetase (FAS), which catalyzes the formation of long-chain fatty acids from acetyl-CoA, malonyl-CoA and NADPH; the multi-functional 6-methysalicylic acid synthase (MSAS) from Penicillium patulum [], which is involved in the biosynthesis of a polyketide antibiotic; polyketide antibiotic synthase enzyme systems; Emericella nidulans multifunctional protein Wa, which is involved in the biosynthesis of conidial green pigment; Rhizobium nodulation protein nodE, which probably acts as a beta-ketoacyl synthase in the synthesis of the nodulation Nod factor fatty acyl chain; and yeast mitochondrial protein CEM1. The condensation reaction is a two step process, first the acyl component of an activated acyl primer is transferred to a cysteine residue of the enzyme and is then condensed with an activated malonyl donor with the concomitant release of carbon dioxide. This entry represents the N-terminal domain of beta-ketoacyl-ACP synthases. ; PDB: 1J3N_B 3KZU_C 1W0I_A 2IX4_A 1F91_B 2BYZ_D 2AQB_C 2BZ3_C 1H4F_C 2VB9_B ....
Probab=99.90 E-value=3.3e-23 Score=140.42 Aligned_cols=108 Identities=35% Similarity=0.622 Sum_probs=80.3
Q ss_pred CCcEEEEecceeCCCCCCHHHHHHHHHcCCCceeeCC-CCCcCCC---CcceeeecCC--------CCcCCC---CChHh
Q psy5298 1 MKRVVVTGLGIVSPVGTTRQSAWNAIKEGKACVSPLS-EPEYSKL---PCKIAARIEG--------LDLTAQ---FTQSK 65 (109)
Q Consensus 1 ~~~V~ItG~g~vs~lG~~~~~~~~~l~~g~s~i~~~~-~~~~~~~---~~~~~~~i~~--------~~~~~~---~~~~~ 65 (109)
|++|+|||||+++|+|.+.+++|++|++|++++++++ +|+...+ +....+.++. ++.... ++++.
T Consensus 1 m~~V~ItG~g~~~p~g~~~~~~w~~L~~g~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (254)
T PF00109_consen 1 MRRVVITGMGCVTPGGDGLEEFWEALLSGRSGIRPIPERWDPSDYYDPPSRVAGEIDDKKGGFIDDFDFDAYFFGIPPRE 80 (254)
T ss_dssp -S-EEEEEEEEEBTTBSSHHHHHHHHHTT---EEESCSSSCHTTSTTSSCSEEECBSSSEESSSTTTCGGGTSTCHHHHH
T ss_pred CCEEEEEEEEEECcCCCCHHHHHhhhccCceeeeeeccccccccccccCCcccccccccccceeeecccccccccccchh
Confidence 8999999999999999999999999999999999988 4544444 4556676664 333322 33445
Q ss_pred hhcCCHHHHHHHHHHHHHHHHcCCCCCCCCCCC-ceEEEEeecCC
Q psy5298 66 LRTMSRATAFSLIATREALADAKWNPQNEKQKE-RTGVAVGTGMI 109 (109)
Q Consensus 66 ~~~~~~~~~~al~a~~eAl~~agl~~~~~~~~~-r~gv~iGt~~~ 109 (109)
.+.|++..+|++.++.|||+|||+.+ ...... |+||++|++.+
T Consensus 81 ~~~~~~~~~~~l~aa~~Al~dAg~~~-~~~~~~~r~gv~~G~~~~ 124 (254)
T PF00109_consen 81 ARRMDRQSRLALAAAREALEDAGLDP-DDLDGERRVGVFVGSSSG 124 (254)
T ss_dssp HHTS-HHHHHHHHHHHHHHHHHTSTG-GGHTGGGTEEEEEEESSS
T ss_pred hhhhhhhhhHHHHHhhhhcccccccc-cccccccceeeccccccc
Confidence 67999999999999999999999985 333444 59999999864
No 13
>cd00834 KAS_I_II Beta-ketoacyl-acyl carrier protein (ACP) synthase (KAS), type I and II. KASs are responsible for the elongation steps in fatty acid biosynthesis. KASIII catalyses the initial condensation and KAS I and II catalyze further elongation steps by Claisen condensation of malonyl-acyl carrier protein (ACP) with acyl-ACP.
Probab=99.88 E-value=1.1e-21 Score=140.72 Aligned_cols=106 Identities=38% Similarity=0.699 Sum_probs=97.0
Q ss_pred CcEEEEecceeCCCCCCHHHHHHHHHcCCCceeeCCCCCcCCCCcceeeecCCCCcCCCCChHhhhcCCHHHHHHHHHHH
Q psy5298 2 KRVVVTGLGIVSPVGTTRQSAWNAIKEGKACVSPLSEPEYSKLPCKIAARIEGLDLTAQFTQSKLRTMSRATAFSLIATR 81 (109)
Q Consensus 2 ~~V~ItG~g~vs~lG~~~~~~~~~l~~g~s~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~al~a~~ 81 (109)
++|+|||||+++|.|.+.+++|++|++|++++++++.+....++..+.+.+++|++...++++..+.|++..+|++.+++
T Consensus 1 ~~i~I~G~g~~~p~g~~~~~~~~~l~~g~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~aa~ 80 (406)
T cd00834 1 RRVVITGLGAVTPLGNGVEEFWEALLAGRSGIRPITRFDASGFPSRIAGEVPDFDPEDYLDRKELRRMDRFAQFALAAAE 80 (406)
T ss_pred CcEEEECcceeCCCcCCHHHHHHHHHcCCCeeEECCcccccCCCccEEEEcCCCChhhcCCHHHhccCCHHHHHHHHHHH
Confidence 58999999999999999999999999999999999987766777888999999887767889999999999999999999
Q ss_pred HHHHHcCCCCCCCCCCCceEEEEeecC
Q psy5298 82 EALADAKWNPQNEKQKERTGVAVGTGM 108 (109)
Q Consensus 82 eAl~~agl~~~~~~~~~r~gv~iGt~~ 108 (109)
+||+|||+.+ ...+..|+|+++|++.
T Consensus 81 ~AL~dAgl~~-~~~~~~~~gv~~g~~~ 106 (406)
T cd00834 81 EALADAGLDP-EELDPERIGVVIGSGI 106 (406)
T ss_pred HHHHHcCCCc-ccCCccceEEEEccCC
Confidence 9999999986 5667899999999875
No 14
>PLN02836 3-oxoacyl-[acyl-carrier-protein] synthase
Probab=99.88 E-value=6e-22 Score=143.82 Aligned_cols=104 Identities=38% Similarity=0.729 Sum_probs=83.5
Q ss_pred CcEEEEecceeCCCCCCHHHHHHHHHcCCCceeeCCCCCc--------------CCCCcceeeecCC------CCcCCCC
Q psy5298 2 KRVVVTGLGIVSPVGTTRQSAWNAIKEGKACVSPLSEPEY--------------SKLPCKIAARIEG------LDLTAQF 61 (109)
Q Consensus 2 ~~V~ItG~g~vs~lG~~~~~~~~~l~~g~s~i~~~~~~~~--------------~~~~~~~~~~i~~------~~~~~~~ 61 (109)
++|+|||||+++|+|.+++++|++|++|+++|++++.+.. ..+++..++.++. |++..+.
T Consensus 6 ~~VvItG~g~~~p~g~~~~~~w~~L~~G~s~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fd~~~~~ 85 (437)
T PLN02836 6 RRVVVTGLGLVTPLGCGVETTWRRLIAGECGVRALTQDDLKMKSEDEETQLYTLDQLPSRVAALVPRGTGPGDFDEELWL 85 (437)
T ss_pred CCEEEEeeeEECCCCCCHHHHHHHHHcCCCccccCChhhhccccccccccccccccCCccEEEEeccccccccCChHHhc
Confidence 6899999999999999999999999999999999986431 3455677777753 4433222
Q ss_pred ChHhhhcCCHHHHHHHHHHHHHHHHcCCCCCCCCCCCceEEEEeecC
Q psy5298 62 TQSKLRTMSRATAFSLIATREALADAKWNPQNEKQKERTGVAVGTGM 108 (109)
Q Consensus 62 ~~~~~~~~~~~~~~al~a~~eAl~~agl~~~~~~~~~r~gv~iGt~~ 108 (109)
..+++++..++++.|++|||+|||+.+.+....+|+||++|++.
T Consensus 86 ---~~~~~~~~~~~~~~aa~~Al~dAg~~~~~~~~~~~~Gv~~Gt~~ 129 (437)
T PLN02836 86 ---NSRSSSRFIGYALCAADEALSDARWLPSEDEAKERTGVSIGGGI 129 (437)
T ss_pred ---cccccCHHHHHHHHHHHHHHHHcCCCcccccCCcCEEEEEeecc
Confidence 14679999999999999999999997533346789999999875
No 15
>COG0304 FabB 3-oxoacyl-(acyl-carrier-protein) synthase [Lipid metabolism / Secondary metabolites biosynthesis, transport, and catabolism]
Probab=99.87 E-value=6.7e-22 Score=142.08 Aligned_cols=106 Identities=38% Similarity=0.603 Sum_probs=93.4
Q ss_pred CCcEEEEecceeCCCCCCHHHHHHHHHcCCCceeeCCCCCcCCCCcceeeecCCCCcCCCCChHhhhcCCHHHHHHHHHH
Q psy5298 1 MKRVVVTGLGIVSPVGTTRQSAWNAIKEGKACVSPLSEPEYSKLPCKIAARIEGLDLTAQFTQSKLRTMSRATAFSLIAT 80 (109)
Q Consensus 1 ~~~V~ItG~g~vs~lG~~~~~~~~~l~~g~s~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~al~a~ 80 (109)
|+||||||+|+++|+|++.+++|++|+.|++++.+++.|+...+.+.+.+.++.+ .+++.++..++||++.+|++.|+
T Consensus 2 ~~rvviTG~g~vs~lG~~~~~~~~~l~~g~sgi~~~~~~~~~~~~~~~~~~i~~~--~~~~~~~~~~~~d~~~~~a~~Aa 79 (412)
T COG0304 2 MRRVVITGLGIVSSLGNGVEEVWAALLAGKSGIRPITRFDASGLGVKIAGEIKDL--DDQIAKKERRFMDRFSQLAVVAA 79 (412)
T ss_pred CceEEEecceeeecccCCHHHHHHHHhcCCCCCCccccccccCCCCccccccccc--ccccchHHhhcccHHHHHHHHHH
Confidence 6899999999999999999999999999999999999999888888888999887 44567777779999999999999
Q ss_pred HHHHHHcCCCCCCCCCCCceEEEEeecCC
Q psy5298 81 REALADAKWNPQNEKQKERTGVAVGTGMI 109 (109)
Q Consensus 81 ~eAl~~agl~~~~~~~~~r~gv~iGt~~~ 109 (109)
.|||+||||......++ |+|+++|++.+
T Consensus 80 ~eAl~dAgl~~~~~~~~-r~gv~iGsg~g 107 (412)
T COG0304 80 VEALEDAGLDNELNVDM-RVGVAIGSGIG 107 (412)
T ss_pred HHHHHHcCCCcccccCc-cEEEEEeccCC
Confidence 99999999983222233 99999999874
No 16
>PRK07910 3-oxoacyl-(acyl carrier protein) synthase II; Reviewed
Probab=99.87 E-value=1.7e-21 Score=140.87 Aligned_cols=104 Identities=27% Similarity=0.460 Sum_probs=87.6
Q ss_pred CCcEEEEecceeCCCCCCHHHHHHHHHcCCCceeeCCCCC--cCCCCcceeeecC-CCCcCCCCChHhhhcCCHHHHHHH
Q psy5298 1 MKRVVVTGLGIVSPVGTTRQSAWNAIKEGKACVSPLSEPE--YSKLPCKIAARIE-GLDLTAQFTQSKLRTMSRATAFSL 77 (109)
Q Consensus 1 ~~~V~ItG~g~vs~lG~~~~~~~~~l~~g~s~i~~~~~~~--~~~~~~~~~~~i~-~~~~~~~~~~~~~~~~~~~~~~al 77 (109)
|+||+|||||+++|+|++.+++|++|++|++++++++.+. ...++..+++.++ +|+ ..++++..+.||+..++++
T Consensus 11 ~~~VvItGig~~sp~g~~~~~~w~~L~~G~s~i~~~~~~~~~~~~~~~~~~g~i~~~~d--~~~~~~~~~~~d~~~~~~l 88 (418)
T PRK07910 11 FPNVVVTGIAMTTALATDAETTWKLLLDGQSGIRTLDDPFVEEFDLPVRIGGHLLEEFD--HQLTRVELRRMSYLQRMST 88 (418)
T ss_pred CCCEEEEeeEEECCCCCCHHHHHHHHHcCCCeeEeCChhhhhccCCCcceEEEeccCcc--ccCCHHHHhhccHHHHHHH
Confidence 6899999999999999999999999999999999987642 2345667778874 344 3477888899999999999
Q ss_pred HHHHHHHHHcCCCCCCCCCCCceEEEEeecCC
Q psy5298 78 IATREALADAKWNPQNEKQKERTGVAVGTGMI 109 (109)
Q Consensus 78 ~a~~eAl~~agl~~~~~~~~~r~gv~iGt~~~ 109 (109)
.+++|||+|||+.. .++.|+||++|++.+
T Consensus 89 ~aa~~AledAg~~~---~~~~r~Gv~~G~~~g 117 (418)
T PRK07910 89 VLGRRVWENAGSPE---VDTNRLMVSIGTGLG 117 (418)
T ss_pred HHHHHHHHHcCCCC---CCcccEEEEEEEccC
Confidence 99999999999852 467899999999753
No 17
>PRK06519 3-oxoacyl-(acyl carrier protein) synthase II; Reviewed
Probab=99.86 E-value=3.7e-21 Score=138.26 Aligned_cols=103 Identities=25% Similarity=0.399 Sum_probs=77.0
Q ss_pred CcEEEEecceeCCCCCCHHHHHHHHHcCCCceeeCCCCCcCCCCcceeeecCCCCcCCCCChH-hhhcCCHHHHHHHHHH
Q psy5298 2 KRVVVTGLGIVSPVGTTRQSAWNAIKEGKACVSPLSEPEYSKLPCKIAARIEGLDLTAQFTQS-KLRTMSRATAFSLIAT 80 (109)
Q Consensus 2 ~~V~ItG~g~vs~lG~~~~~~~~~l~~g~s~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~-~~~~~~~~~~~al~a~ 80 (109)
+||||||||+++|+|++++++|++|++|+++ ...+......++. ..+.++++..+++++ ..++|++..+|++.|+
T Consensus 6 ~rVvITGiG~vsp~G~~~e~~w~aL~~G~sg-~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~r~~~r~~~~a~~Aa 81 (398)
T PRK06519 6 NDVVITGIGLVSSLGEGLDAHWNALSAGRPQ-PNVDTETFAPYPV---HPLPEIDWSQQIPKRGDQRQMETWQRLGTYAA 81 (398)
T ss_pred CCEEEEcceEECCCCCCHHHHHHHHHcCCCC-CCCCcccccCcCc---ccccccChhhcCCchhhhhccCHHHHHHHHHH
Confidence 5899999999999999999999999999998 2222111111222 222333434445555 6688999999999999
Q ss_pred HHHHHHcCCCCCCCCCCCceEEEEeecCC
Q psy5298 81 REALADAKWNPQNEKQKERTGVAVGTGMI 109 (109)
Q Consensus 81 ~eAl~~agl~~~~~~~~~r~gv~iGt~~~ 109 (109)
.|||+|||+.. ...+.+|+||++||+.+
T Consensus 82 ~~Al~dAGl~~-~~~~~~r~GvivGt~~g 109 (398)
T PRK06519 82 GLALDDAGIKG-NEELLSTMDMIVAAGGG 109 (398)
T ss_pred HHHHHHcCCCC-CCCCccceEEEEEeCCC
Confidence 99999999974 33456799999999864
No 18
>cd00828 elong_cond_enzymes "elongating" condensing enzymes are a subclass of decarboxylating condensing enzymes, including beta-ketoacyl [ACP] synthase, type I and II and polyketide synthases.They are characterized by the utlization of acyl carrier protein (ACP) thioesters as primer substrates, as well as the nature of their active site residues.
Probab=99.86 E-value=9.7e-21 Score=136.07 Aligned_cols=101 Identities=36% Similarity=0.588 Sum_probs=89.1
Q ss_pred CcEEEEecceeCCCCCC---HHHHHHHHHcCCCceeeCCCCCcCCCCcceeeecCCCCcCCCCChHhhhcC---CHHHHH
Q psy5298 2 KRVVVTGLGIVSPVGTT---RQSAWNAIKEGKACVSPLSEPEYSKLPCKIAARIEGLDLTAQFTQSKLRTM---SRATAF 75 (109)
Q Consensus 2 ~~V~ItG~g~vs~lG~~---~~~~~~~l~~g~s~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~---~~~~~~ 75 (109)
.||+|||||+++|+|.+ .+++|++|.+|++++++++.+. ..++..+.|.+++|+ ++++..+.+ ++..+|
T Consensus 1 ~~v~ItG~g~v~p~g~~~~~~~~~w~~l~~g~s~i~~~~~~~-~~~~~~~~g~i~~~~----~~~~~~~~~~~~~~~~~l 75 (407)
T cd00828 1 SRVVITGIGVVSPHGEGCDEVEEFWEALREGRSGIAPVARLK-SRFDRGVAGQIPTGD----IPGWDAKRTGIVDRTTLL 75 (407)
T ss_pred CCEEEECceeecCCCCCCCCHHHHHHHHHcCCCceeeCCccc-ccCCccEEEEccCCC----cCHHHHHhccCCCHHHHH
Confidence 48999999999999999 9999999999999999998876 566778889998765 566667777 999999
Q ss_pred HHHHHHHHHHHcCCCCCCC-CCCCceEEEEeecC
Q psy5298 76 SLIATREALADAKWNPQNE-KQKERTGVAVGTGM 108 (109)
Q Consensus 76 al~a~~eAl~~agl~~~~~-~~~~r~gv~iGt~~ 108 (109)
++.++++||+|||+.+ .. ++..|+|+++|++.
T Consensus 76 ~~~aa~~Al~dAGl~~-~~~~~~~~~gv~~g~~~ 108 (407)
T cd00828 76 ALVATEEALADAGITD-PYEVHPSEVGVVVGSGM 108 (407)
T ss_pred HHHHHHHHHHhCCCCc-cccCCccCeEEEEeecc
Confidence 9999999999999985 45 67899999999875
No 19
>PRK09185 3-oxoacyl-(acyl carrier protein) synthase I; Reviewed
Probab=99.81 E-value=2.2e-19 Score=128.95 Aligned_cols=102 Identities=22% Similarity=0.342 Sum_probs=79.7
Q ss_pred CCcEEEEecceeCCCCCCHHHHHHHHHcCC-CceeeCCCCCcCCCCcceeeecCCCCcCCCCChHhhhcCCHHHHHHHHH
Q psy5298 1 MKRVVVTGLGIVSPVGTTRQSAWNAIKEGK-ACVSPLSEPEYSKLPCKIAARIEGLDLTAQFTQSKLRTMSRATAFSLIA 79 (109)
Q Consensus 1 ~~~V~ItG~g~vs~lG~~~~~~~~~l~~g~-s~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~al~a 79 (109)
|+||||||+|+++|+|++++++|++|++|+ ++|++++.+... ++. ..|.+++|+. ..++++..+.+++..++++.|
T Consensus 1 m~~VvITG~G~vsp~G~~~~~~~~~l~~G~~sgi~~~~~~~~~-~~~-~~g~~~~~~~-~~~~~~~~~~~~~~~~~~~~a 77 (392)
T PRK09185 1 MTPVYISAFGATSALGRGLDAILAALRAGRASGMRPCDFWLVD-LPT-WVGEVVGVEL-PALPAALAAFDCRNNRLALLA 77 (392)
T ss_pred CCcEEEEeeEEECCCcCCHHHHHHHHHcCCCCCeEeCcccccc-CCe-EEEEecCccc-ccCCHHHHhcCCHHHHHHHHH
Confidence 899999999999999999999999999999 999999876532 333 3477776652 345666677888888888887
Q ss_pred HHH---HHHHcCCCCCCCCCCCceEEEEeecCC
Q psy5298 80 TRE---ALADAKWNPQNEKQKERTGVAVGTGMI 109 (109)
Q Consensus 80 ~~e---Al~~agl~~~~~~~~~r~gv~iGt~~~ 109 (109)
+.+ |+.+++ ...+.+|+||++|++.+
T Consensus 78 ~~~~~~a~~~~~----~~~~~~r~gv~~Gt~~g 106 (392)
T PRK09185 78 LQQIEPAVEAAI----ARYGADRIGVVLGTSTS 106 (392)
T ss_pred HHHHHHHHHhhc----ccCCCCcEEEEEeeCCc
Confidence 776 555554 12356799999998753
No 20
>cd00833 PKS polyketide synthases (PKSs) polymerize simple fatty acids into a large variety of different products, called polyketides, by successive decarboxylating Claisen condensations. PKSs can be divided into 2 groups, modular type I PKSs consisting of one or more large multifunctional proteins and iterative type II PKSs, complexes of several monofunctional subunits.
Probab=99.81 E-value=1.6e-19 Score=129.95 Aligned_cols=106 Identities=22% Similarity=0.350 Sum_probs=86.8
Q ss_pred CcEEEEecceeCCCCCCHHHHHHHHHcCCCceeeCCC--CCcC----------CCCcceeeecCC---CCcCCC-CChHh
Q psy5298 2 KRVVVTGLGIVSPVGTTRQSAWNAIKEGKACVSPLSE--PEYS----------KLPCKIAARIEG---LDLTAQ-FTQSK 65 (109)
Q Consensus 2 ~~V~ItG~g~vs~lG~~~~~~~~~l~~g~s~i~~~~~--~~~~----------~~~~~~~~~i~~---~~~~~~-~~~~~ 65 (109)
.+|+|||||+++|+|.+.+++|++|++|++++++++. |... .......+.+++ |++..+ ++++.
T Consensus 1 ~~v~ItG~g~~~p~g~~~~~~~~~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~~~~ 80 (421)
T cd00833 1 EPIAIVGMACRFPGAADPDEFWENLLEGRDAISEIPEDRWDADGYYPDPGKPGKTYTRRGGFLDDVDAFDAAFFGISPRE 80 (421)
T ss_pred CCEEEEceeeECCCCCCHHHHHHHHHcCCCcCcCCChhHcCccccccccccCCCcceecceecCCcccCCHhHcCCCHHH
Confidence 4799999999999999999999999999999998873 3322 124455677765 444333 67888
Q ss_pred hhcCCHHHHHHHHHHHHHHHHcCCCCCCCCCCCceEEEEeecC
Q psy5298 66 LRTMSRATAFSLIATREALADAKWNPQNEKQKERTGVAVGTGM 108 (109)
Q Consensus 66 ~~~~~~~~~~al~a~~eAl~~agl~~~~~~~~~r~gv~iGt~~ 108 (109)
.+.+++..+|++.|+++||+|||+.+ ...+..|+|+++|++.
T Consensus 81 ~~~~~~~~~l~~~aa~~AL~dAgl~~-~~~~~~~~gv~~g~~~ 122 (421)
T cd00833 81 AEAMDPQQRLLLEVAWEALEDAGYSP-ESLAGSRTGVFVGASS 122 (421)
T ss_pred HHhcCHHHHHHHHHHHHHHHHcCCCc-hhcCCCCceEEeCcCH
Confidence 89999999999999999999999985 4567899999999864
No 21
>TIGR02813 omega_3_PfaA polyketide-type polyunsaturated fatty acid synthase PfaA. Members of the seed for this alignment are involved in omega-3 polyunsaturated fatty acid biosynthesis, such as the protein PfaA from the eicosapentaenoic acid biosynthesis operon in Photobacterium profundum strain SS9. PfaA is encoded together with PfaB, PfaC, and PfaD, and the functions of the individual polypeptides have not yet been described. More distant homologs of PfaA, also included with the reach of this model, appear to be involved in polyketide-like biosynthetic mechanisms of polyunsaturated fatty acid biosynthesis, an alternative to the more familiar iterated mechanism of chain extension and desaturation, and in most cases are encoded near genes for homologs of PfaB, PfaC, and/or PfaD.
Probab=99.80 E-value=4.9e-19 Score=146.81 Aligned_cols=105 Identities=16% Similarity=0.271 Sum_probs=90.1
Q ss_pred CcEEEEecceeCCCCCCHHHHHHHHHcCCCceeeCC--CCCcC-----------CCCcceeeecC--CCCcCCC-CChHh
Q psy5298 2 KRVVVTGLGIVSPVGTTRQSAWNAIKEGKACVSPLS--EPEYS-----------KLPCKIAARIE--GLDLTAQ-FTQSK 65 (109)
Q Consensus 2 ~~V~ItG~g~vs~lG~~~~~~~~~l~~g~s~i~~~~--~~~~~-----------~~~~~~~~~i~--~~~~~~~-~~~~~ 65 (109)
++|+|||||+++|.|.|+++||++|++|+++|++++ +|+.. ..++..+|+++ +||+.++ ++++.
T Consensus 7 ~~IAIvGmg~~~P~a~~~~~fW~~L~~G~~~i~~ip~~rw~~~~~~~~~~~~~~~~~~~~ggfl~~v~FD~~~F~i~p~e 86 (2582)
T TIGR02813 7 MPIAIVGMASIFANSRYLNKFWDLIFEKIDAITDVPSDHWAKDDYYDSDKSEADKSYCKRGGFLPEVDFNPMEFGLPPNI 86 (2582)
T ss_pred CCEEEEeeeeeCCCCCCHHHHHHHHHcCCCccCCCChhhCChhhccCccccccCCcccceeEecCccCCCHhhcCCCHHH
Confidence 469999999999999999999999999999999886 34322 24567788887 4777665 89999
Q ss_pred hhcCCHHHHHHHHHHHHHHHHcCCCCCCCCCCCceEEEEeecC
Q psy5298 66 LRTMSRATAFSLIATREALADAKWNPQNEKQKERTGVAVGTGM 108 (109)
Q Consensus 66 ~~~~~~~~~~al~a~~eAl~~agl~~~~~~~~~r~gv~iGt~~ 108 (109)
.+.||+++++++.+++|||+|||+.. ..+++|+||++|++.
T Consensus 87 a~~mDpqqrl~L~~a~eALedAG~~~--~~~~~r~GV~~G~~~ 127 (2582)
T TIGR02813 87 LELTDISQLLSLVVAKEVLNDAGLPD--GYDRDKIGITLGVGG 127 (2582)
T ss_pred HHhcCHHHHHHHHHHHHHHHhCCCCC--CCCCCCEEEEEEECC
Confidence 99999999999999999999999964 367899999999864
No 22
>smart00825 PKS_KS Beta-ketoacyl synthase. The structure of beta-ketoacyl synthase is similar to that of the thiolase family and also chalcone synthase. The active site of beta-ketoacyl synthase is located between the N and C-terminal domains.
Probab=99.80 E-value=3.8e-19 Score=128.36 Aligned_cols=104 Identities=19% Similarity=0.318 Sum_probs=85.6
Q ss_pred EEEEecceeCCCCCCHHHHHHHHHcCCCceeeCC--CCCcCC------------CCcceeeecC---CCCcCCC-CChHh
Q psy5298 4 VVVTGLGIVSPVGTTRQSAWNAIKEGKACVSPLS--EPEYSK------------LPCKIAARIE---GLDLTAQ-FTQSK 65 (109)
Q Consensus 4 V~ItG~g~vs~lG~~~~~~~~~l~~g~s~i~~~~--~~~~~~------------~~~~~~~~i~---~~~~~~~-~~~~~ 65 (109)
|+|||||+++|+|.+.+++|++|++|++++++++ +|.... ..+..++.++ +|++..+ ++++.
T Consensus 1 v~ItG~g~~~p~g~~~~~~~~~l~~g~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~d~~~~~i~~~~ 80 (424)
T smart00825 1 IAIVGMSCRFPGADSPEEFWDLLREGRDAITEIPADRWDADAFYYDPDPDRPGKSYVRWGGFLDDVDLFDAAFFGISPRE 80 (424)
T ss_pred CEEEEEEeeCCCCCCHHHHHHHHHcCCcccccCChHHcCccccccccccccCCCcccccceecCchhhCCHhHcCCCHHH
Confidence 7999999999999999999999999999999886 343222 2445566554 3666554 78888
Q ss_pred hhcCCHHHHHHHHHHHHHHHHcCCCCCCCCCCCceEEEEeecC
Q psy5298 66 LRTMSRATAFSLIATREALADAKWNPQNEKQKERTGVAVGTGM 108 (109)
Q Consensus 66 ~~~~~~~~~~al~a~~eAl~~agl~~~~~~~~~r~gv~iGt~~ 108 (109)
.+.+++..+|++.|+++||+|||+++ ...+.+|+||++|++.
T Consensus 81 ~~~~~~~~~l~~~aa~~Al~dAGl~~-~~id~~~~gv~~g~~~ 122 (424)
T smart00825 81 AEAMDPQQRLLLEVAWEALEDAGIDP-ESLRGSRTGVFVGAMS 122 (424)
T ss_pred HHhcCHHHHHHHHHHHHHHHHcCCCh-hHcCCCCCEEEEEEcH
Confidence 89999999999999999999999986 5567789999999763
No 23
>PRK05952 3-oxoacyl-(acyl carrier protein) synthase II; Reviewed
Probab=99.76 E-value=4.8e-18 Score=121.67 Aligned_cols=89 Identities=27% Similarity=0.405 Sum_probs=66.6
Q ss_pred CCcEEEEecceeCCCCCCHHHHHHHHHcCCCceeeCCCCCcCCCCcceeeecCCCCcCCCCChHhhhcCCHHHHHHHHHH
Q psy5298 1 MKRVVVTGLGIVSPVGTTRQSAWNAIKEGKACVSPLSEPEYSKLPCKIAARIEGLDLTAQFTQSKLRTMSRATAFSLIAT 80 (109)
Q Consensus 1 ~~~V~ItG~g~vs~lG~~~~~~~~~l~~g~s~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~al~a~ 80 (109)
|+||||||+|+++|+|+ ++++|++|++|+|+|++++.|.. .+....+.+. +. + ..+++ ++..++
T Consensus 1 ~~rVvITG~G~vsp~G~-~~~~~~~l~~G~sgi~~~~~~~~--~~~~~~~~~~-~~------~---~~~~~---~~~~a~ 64 (381)
T PRK05952 1 MMKVVVTGIGLVSALGD-LEQSWQRLLQGKSGIKLHQPFPE--LPPLPLGLIG-NQ------P---SSLED---LTKTVV 64 (381)
T ss_pred CCeEEEEeeEEECcccC-HHHHHHHHHcCCCCeEeCCcccc--cccccceeec-cc------c---ccccH---HHHHHH
Confidence 89999999999999999 99999999999999999887642 1211111111 00 0 12333 566889
Q ss_pred HHHHHHcCCCCCCCCCCCceEEEEeecCC
Q psy5298 81 REALADAKWNPQNEKQKERTGVAVGTGMI 109 (109)
Q Consensus 81 ~eAl~~agl~~~~~~~~~r~gv~iGt~~~ 109 (109)
+|||+|||+.+ +.+|+||++||+.+
T Consensus 65 ~~Al~dagl~~----~~~~~Gv~~Gt~~g 89 (381)
T PRK05952 65 TAALKDAGLTP----PLTDCGVVIGSSRG 89 (381)
T ss_pred HHHHHhcCCCC----CCCCEEEEEeeCcc
Confidence 99999999974 24899999999753
No 24
>PRK06501 3-oxoacyl-(acyl carrier protein) synthase II; Reviewed
Probab=99.74 E-value=3.7e-17 Score=118.55 Aligned_cols=99 Identities=24% Similarity=0.411 Sum_probs=80.0
Q ss_pred CcEEEEecceeCCCCCCHHHHHHHHHcCCCceeeCCCCCcCCCCcceeeecCCCCcCCCCChHhhhcCCHHHHHHHHHHH
Q psy5298 2 KRVVVTGLGIVSPVGTTRQSAWNAIKEGKACVSPLSEPEYSKLPCKIAARIEGLDLTAQFTQSKLRTMSRATAFSLIATR 81 (109)
Q Consensus 2 ~~V~ItG~g~vs~lG~~~~~~~~~l~~g~s~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~al~a~~ 81 (109)
.+|+|||||+++|+|.+.+++|++|++|+++++++++|+...+++.++|.++.++ ... ...+++..++++.+++
T Consensus 11 ~~VvITG~G~vs~~G~~~~~~~~~L~~G~s~i~~~~~~~~~~~~~~~~g~~~~~~-~~~-----~~~~~~~~~~~~~aa~ 84 (425)
T PRK06501 11 PIVAVTGMGVVTSLGQGKADNWAALTAGESGIHTITRFPTEGLRTRIAGTVDFLP-ESP-----FGASALSEALARLAAE 84 (425)
T ss_pred cCEEEEeeeEECCCCCCHHHHHHHHHcCCCceEcCCcccccCCCCceEEEEeecc-ccc-----ccccCHHHHHHHHHHH
Confidence 3799999999999999999999999999999999999887778888889886332 221 2236788999999999
Q ss_pred HHHHHcCCCCCCC--------------CCCCceEEEEeec
Q psy5298 82 EALADAKWNPQNE--------------KQKERTGVAVGTG 107 (109)
Q Consensus 82 eAl~~agl~~~~~--------------~~~~r~gv~iGt~ 107 (109)
|||+|||+.+ .+ ...+|.+++.++.
T Consensus 85 ~Al~dAgl~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 123 (425)
T PRK06501 85 EALAQAGIGK-GDFPGPLFLAAPPVELEWPARFALAAAVG 123 (425)
T ss_pred HHHHHcCCCc-cccccceeeccccccCCCCceEEEEEecC
Confidence 9999999853 11 1256888888765
No 25
>COG3321 Polyketide synthase modules and related proteins [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=99.71 E-value=6.9e-17 Score=127.15 Aligned_cols=105 Identities=19% Similarity=0.308 Sum_probs=89.8
Q ss_pred cEEEEecceeCCCCCCHHHHHHHHHcCCCceeeCCC--CCcC-----------CCCcceeeecC---CCCcCCC-CChHh
Q psy5298 3 RVVVTGLGIVSPVGTTRQSAWNAIKEGKACVSPLSE--PEYS-----------KLPCKIAARIE---GLDLTAQ-FTQSK 65 (109)
Q Consensus 3 ~V~ItG~g~vs~lG~~~~~~~~~l~~g~s~i~~~~~--~~~~-----------~~~~~~~~~i~---~~~~~~~-~~~~~ 65 (109)
.|+|+||+|.+|..++++++|++|.+|++.|+.++. |+.+ ..+...+|+++ .||+.++ ++|++
T Consensus 5 ~IAIiGm~~rfPga~~~~~~W~~l~~g~~~i~~ip~~rwd~~~~~~~~~~~~gk~~~~~ggfl~~~~~FD~~fFgisPrE 84 (1061)
T COG3321 5 PIAIIGMACRFPGADSPEEFWDLLKEGRDEITEVPADRWDVDAYYDPDPTVPGKSYSRWGGFLDDVDDFDALFFGISPRE 84 (1061)
T ss_pred cEEEEeccccCCCCCCHHHHHHHHhcCCceeeecChhhhhHhhccCCccccccccccccccccCCccccCHHHcCCCHHH
Confidence 499999999999999999999999999999999984 2211 12345667766 4888765 99999
Q ss_pred hhcCCHHHHHHHHHHHHHHHHcCCCCCCCCCCCceEEEEeecC
Q psy5298 66 LRTMSRATAFSLIATREALADAKWNPQNEKQKERTGVAVGTGM 108 (109)
Q Consensus 66 ~~~~~~~~~~al~a~~eAl~~agl~~~~~~~~~r~gv~iGt~~ 108 (109)
...||++.++.+..+++||||||+.+ ..+...++||++|.+.
T Consensus 85 A~~mDPQqRllLe~aw~AlEdAG~~~-~~l~g~~tgV~~g~~~ 126 (1061)
T COG3321 85 AEAMDPQQRLLLEVAWEALEDAGIYP-DSLRGSATGVFAGASV 126 (1061)
T ss_pred HHhcCchHhHHHHHHHHHHHHcCCCc-cccCCcceEEEEeecc
Confidence 99999999999999999999999997 6677789999999875
No 26
>PTZ00050 3-oxoacyl-acyl carrier protein synthase; Provisional
Probab=99.67 E-value=6e-16 Score=112.13 Aligned_cols=94 Identities=40% Similarity=0.698 Sum_probs=76.5
Q ss_pred eeCCCCCCHHHHHHHHHcCCCceeeCCCCC----------------cCCCCcceeeecC--CCCcCCCCChHhhhcCCHH
Q psy5298 11 IVSPVGTTRQSAWNAIKEGKACVSPLSEPE----------------YSKLPCKIAARIE--GLDLTAQFTQSKLRTMSRA 72 (109)
Q Consensus 11 ~vs~lG~~~~~~~~~l~~g~s~i~~~~~~~----------------~~~~~~~~~~~i~--~~~~~~~~~~~~~~~~~~~ 72 (109)
+|+|+|++++++|++|++|++++++++.+. ...+++.++|+|+ +|++..+.. ..+.++.
T Consensus 1 ~vs~~G~~~~~~w~~L~~G~s~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~~f~~~~~~~---~~~~~~~ 77 (421)
T PTZ00050 1 VVTPLGVGAESTWEALIAGKSGIRKLTEFPKFLPDCIPEQKALENLVAAMPCQIAAEVDQSEFDPSDFAP---TKRESRA 77 (421)
T ss_pred CCCCCcCCHHHHHHHHHcCCCeeecCCchhhcccccccccccccccccCCCCceEEECCcccCChhHcCC---cccCCHH
Confidence 589999999999999999999999998765 3456778888887 465543321 2346999
Q ss_pred HHHHHHHHHHHHHHcCCC-CCCCCCCCceEEEEeecC
Q psy5298 73 TAFSLIATREALADAKWN-PQNEKQKERTGVAVGTGM 108 (109)
Q Consensus 73 ~~~al~a~~eAl~~agl~-~~~~~~~~r~gv~iGt~~ 108 (109)
.+|++.++++||+|||+. + ...+..|+|+++|++.
T Consensus 78 ~~l~~~aa~~Al~dAGl~~~-~~~~~~~~Gv~~g~~~ 113 (421)
T PTZ00050 78 THFAMAAAREALADAKLDIL-SEKDQERIGVNIGSGI 113 (421)
T ss_pred HHHHHHHHHHHHHHcCCCcc-cccCcccEEEEEccCc
Confidence 999999999999999997 4 4567789999999875
No 27
>KOG1202|consensus
Probab=99.48 E-value=1.9e-13 Score=107.10 Aligned_cols=108 Identities=23% Similarity=0.238 Sum_probs=90.1
Q ss_pred CCcEEEEecceeCCCCCCHHHHHHHHHcCCCceeeCCCCCcCCCCc--ceeeecCC---CCcCCC-CChHhhhcCCHHHH
Q psy5298 1 MKRVVVTGLGIVSPVGTTRQSAWNAIKEGKACVSPLSEPEYSKLPC--KIAARIEG---LDLTAQ-FTQSKLRTMSRATA 74 (109)
Q Consensus 1 ~~~V~ItG~g~vs~lG~~~~~~~~~l~~g~s~i~~~~~~~~~~~~~--~~~~~i~~---~~~~~~-~~~~~~~~~~~~~~ 74 (109)
+.+|||+|++...|-..|.++||++|++|.+.++..++.+..+++. ...|..++ ||...+ ..+++...||++.+
T Consensus 10 ~edIvIsG~sgklPes~nv~eF~~nLl~g~DmVtdd~rrW~~G~ygLP~r~gKlKdL~kFDa~ff~vh~KQa~~MDPq~R 89 (2376)
T KOG1202|consen 10 QEDIVISGMSGKLPESDNVKEFGDNLLAGVDMVTDDPRRWEAGLYGLPKRSGKLKDLNKFDAGFFGVHPKQANTMDPQLR 89 (2376)
T ss_pred CCcEEEeccCCCCCCcccHHHHhhhhhcccccccCCcccccccccCCchhhcchhhhhhhcccccCcCcccccccCHHHH
Confidence 4689999999999999999999999999999999888654433321 12355554 665543 67899999999999
Q ss_pred HHHHHHHHHHHHcCCCCCCCCCCCceEEEEeecCC
Q psy5298 75 FSLIATREALADAKWNPQNEKQKERTGVAVGTGMI 109 (109)
Q Consensus 75 ~al~a~~eAl~~agl~~~~~~~~~r~gv~iGt~~~ 109 (109)
|.+++.+||+-|||++| ..+.+.|+||++|.+.+
T Consensus 90 lLLE~t~EAivDaGiNP-~~LRGs~tGv~vg~s~s 123 (2376)
T KOG1202|consen 90 LLLEATWEAIVDAGINP-DDLRGSRTGVFVGVSGS 123 (2376)
T ss_pred HHHHHHHHHHHhCCCCh-hhcCcccceeEEeecCc
Confidence 99999999999999998 78899999999998764
No 28
>PRK06147 3-oxoacyl-(acyl carrier protein) synthase; Validated
Probab=98.89 E-value=1.4e-08 Score=72.35 Aligned_cols=91 Identities=18% Similarity=0.185 Sum_probs=60.9
Q ss_pred CCcEEEEecceeCCCCCCHHHHHHHHHcCCCceeeCCCCCcCCCCcceee-ecCCCCcCCCCChHhhhcCCHHHHHHHHH
Q psy5298 1 MKRVVVTGLGIVSPVGTTRQSAWNAIKEGKACVSPLSEPEYSKLPCKIAA-RIEGLDLTAQFTQSKLRTMSRATAFSLIA 79 (109)
Q Consensus 1 ~~~V~ItG~g~vs~lG~~~~~~~~~l~~g~s~i~~~~~~~~~~~~~~~~~-~i~~~~~~~~~~~~~~~~~~~~~~~al~a 79 (109)
|+.|+|+|+|++||+|.+.++.|.+++.|.+.....+.++... ..++.+ ... .... .....+...|+..|
T Consensus 2 ~~~v~I~~~g~vs~lG~~~~~~~aa~ragi~~~~~~~~~~~~~-~~~i~~~~~~---~~~~-----~~~~~r~~~La~~A 72 (348)
T PRK06147 2 MRALAIVGSGMVTAVGLDAPSSCAAIRARLDNFQETRFIDPPG-GEWLIGAPVP---LPPP-----WRGPERLAEMAAPA 72 (348)
T ss_pred CCceEEEecceeecCcCCHHHHHHHHHcccccccccccccCCC-CCceEeecCc---CCcc-----cCchHHHHHHHHHH
Confidence 7889999999999999999999999988877664443332110 111111 111 0111 12245788999999
Q ss_pred HHHHHHHcC-CCCCCCCCCCceEEEEee
Q psy5298 80 TREALADAK-WNPQNEKQKERTGVAVGT 106 (109)
Q Consensus 80 ~~eAl~~ag-l~~~~~~~~~r~gv~iGt 106 (109)
+++||++++ +++ .++.++|+.
T Consensus 73 l~~aL~~a~~~~~------~~i~lil~~ 94 (348)
T PRK06147 73 IAEALEGLPALDA------SEAPLLLCV 94 (348)
T ss_pred HHHHHHhcccccc------cCCcEEEEe
Confidence 999999998 342 457777775
No 29
>PRK14691 3-oxoacyl-(acyl carrier protein) synthase II; Provisional
Probab=97.77 E-value=5.9e-05 Score=53.85 Aligned_cols=37 Identities=27% Similarity=0.399 Sum_probs=32.1
Q ss_pred CCHHHHHHHHHHHHHHHHcCCCCCCCCCCCceEEEEeecCC
Q psy5298 69 MSRATAFSLIATREALADAKWNPQNEKQKERTGVAVGTGMI 109 (109)
Q Consensus 69 ~~~~~~~al~a~~eAl~~agl~~~~~~~~~r~gv~iGt~~~ 109 (109)
++|..+|++.+++|||+|||+. .+++|+||++|++.+
T Consensus 1 ~~~~~~~~~~a~~~a~~~a~~~----~~~~r~Gv~~G~~~g 37 (342)
T PRK14691 1 MGRWWRYKWITFHPSLTHADNT----EKQERTATIIGAGIG 37 (342)
T ss_pred CCHHHHHHHHHHHHHHHhCCCC----CCcccEEEEEecCcc
Confidence 5789999999999999999975 246899999999864
No 30
>cd00825 decarbox_cond_enzymes decarboxylating condensing enzymes; Family of enzymes that catalyze the formation of a new carbon-carbon bond by a decarboxylating Claisen-like condensation reaction. Members are involved in the synthesis of fatty acids and polyketides, a diverse group of natural products. Both pathways are an iterative series of additions of small carbon units, usually acetate, to a nascent acyl group. There are 2 classes of decarboxylating condensing enzymes, which can be distinguished by sequence similarity, type of active site residues and type of primer units (acetyl CoA or acyl carrier protein (ACP) linked units).
Probab=97.37 E-value=0.00052 Score=48.07 Aligned_cols=36 Identities=31% Similarity=0.409 Sum_probs=29.9
Q ss_pred HHHHHHHHHHHHHHHcCCCCCCCCCCCceEEEEeecC
Q psy5298 72 ATAFSLIATREALADAKWNPQNEKQKERTGVAVGTGM 108 (109)
Q Consensus 72 ~~~~al~a~~eAl~~agl~~~~~~~~~r~gv~iGt~~ 108 (109)
..++++.|+++||++||+++ .....+..++++|++.
T Consensus 11 ~~~l~~~aa~~aL~~Ag~~~-~~~~~~i~~ii~~~~~ 46 (332)
T cd00825 11 VSILGFEAAERAIADAGLSR-EYQKNPIVGVVVGTGG 46 (332)
T ss_pred HHHHHHHHHHHHHHHcCCCc-cccCCCCEEEEEEeCC
Confidence 67899999999999999984 3445678899999874
No 31
>COG0332 FabH 3-oxoacyl-[acyl-carrier-protein]
Probab=94.11 E-value=0.25 Score=35.29 Aligned_cols=31 Identities=23% Similarity=0.367 Sum_probs=24.0
Q ss_pred HHHHHHHHHHHHHHHHcCCCCCCCCCCCceEEEEeec
Q psy5298 71 RATAFSLIATREALADAKWNPQNEKQKERTGVAVGTG 107 (109)
Q Consensus 71 ~~~~~al~a~~eAl~~agl~~~~~~~~~r~gv~iGt~ 107 (109)
....|+..|+++||++||+.+ +.+.++|-++
T Consensus 51 ~~s~la~~Aa~~AL~~Agi~~------~dIDlII~aT 81 (323)
T COG0332 51 TTSDLAVEAARKALEDAGISP------DDIDLIIVAT 81 (323)
T ss_pred cHHHHHHHHHHHHHHHcCCCH------HHCCEEEEEc
Confidence 367899999999999999986 4565555544
No 32
>PF13723 Ketoacyl-synt_2: Beta-ketoacyl synthase, N-terminal domain
Probab=93.03 E-value=0.29 Score=33.05 Aligned_cols=42 Identities=24% Similarity=0.292 Sum_probs=32.6
Q ss_pred CCCChHhhhcCCHHHHHHHHHHHHHHHHcCCCCCCCCCCCceEEEEeecCC
Q psy5298 59 AQFTQSKLRTMSRATAFSLIATREALADAKWNPQNEKQKERTGVAVGTGMI 109 (109)
Q Consensus 59 ~~~~~~~~~~~~~~~~~al~a~~eAl~~agl~~~~~~~~~r~gv~iGt~~~ 109 (109)
.++|+...|+|++..++++.++.+++++.. +.+ .+|++|+.|
T Consensus 21 ~~lp~m~rRRls~~~rla~~~a~~~~~~~~-------~~d--~~VfaS~~G 62 (218)
T PF13723_consen 21 AFLPPMQRRRLSRLSRLALEAALECLAEDE-------QPD--AIVFASRHG 62 (218)
T ss_pred ccCCHHHHcccCHHHHHHHHHHHHHHhccC-------CCC--cEEEEeCCC
Confidence 468999999999999999999999886531 111 678887654
No 33
>PRK09352 3-oxoacyl-(acyl carrier protein) synthase III; Reviewed
Probab=92.74 E-value=0.5 Score=33.05 Aligned_cols=81 Identities=15% Similarity=0.152 Sum_probs=46.1
Q ss_pred CCcEEEEecceeCCCCC-CHHHHHHHHHcCCCceeeCCCCCcCCCCcceeeecCCCCcCCCCChHhhhcCCHHHHHHHHH
Q psy5298 1 MKRVVVTGLGIVSPVGT-TRQSAWNAIKEGKACVSPLSEPEYSKLPCKIAARIEGLDLTAQFTQSKLRTMSRATAFSLIA 79 (109)
Q Consensus 1 ~~~V~ItG~g~vs~lG~-~~~~~~~~l~~g~s~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~al~a 79 (109)
|.+|.|+++|...|--. ..+++.+.+......+.. ..++.... ...+ -.....|+..|
T Consensus 1 ~~~v~I~ai~~~lP~~~~~~~~~~~~~~~~~~~i~~-----~~gi~~r~-----------~~~~-----~~~~~~la~~A 59 (319)
T PRK09352 1 MMYAKILGTGSYLPERVVTNDDLEKMVDTSDEWIVT-----RTGIKERR-----------IAAP-----DETTSDLATEA 59 (319)
T ss_pred CCceEEEEEEEECCCeEEcHHHHHHHcCCCHHHhhh-----hcCeEEEE-----------eCCC-----CCCHHHHHHHH
Confidence 78999999999998864 566666653211000000 00110000 0000 12357889999
Q ss_pred HHHHHHHcCCCCCCCCCCCceEEEEeec
Q psy5298 80 TREALADAKWNPQNEKQKERTGVAVGTG 107 (109)
Q Consensus 80 ~~eAl~~agl~~~~~~~~~r~gv~iGt~ 107 (109)
+++||+++|+++ ++. -.+++|++
T Consensus 60 ~~~al~~agl~~-~~i----d~vi~~~~ 82 (319)
T PRK09352 60 AKKALEAAGIDP-EDI----DLIIVATT 82 (319)
T ss_pred HHHHHHHcCCCH-HHC----CEEEEEcC
Confidence 999999999875 222 24666665
No 34
>PRK07515 3-oxoacyl-(acyl carrier protein) synthase III; Reviewed
Probab=92.18 E-value=0.85 Score=32.86 Aligned_cols=33 Identities=27% Similarity=0.314 Sum_probs=24.0
Q ss_pred CHHHHHHHHHHHHHHHHcCCCCCCCCCCCceEEEEeec
Q psy5298 70 SRATAFSLIATREALADAKWNPQNEKQKERTGVAVGTG 107 (109)
Q Consensus 70 ~~~~~~al~a~~eAl~~agl~~~~~~~~~r~gv~iGt~ 107 (109)
+....|+..|+++||+++|+++ ++.+ .++++++
T Consensus 93 ~~~~~la~~Aa~~aL~~agl~~-~~Id----~li~~~~ 125 (372)
T PRK07515 93 SIQAEMGVAAARQALARAGRTA-EDID----AVIVACS 125 (372)
T ss_pred hhHHHHHHHHHHHHHHHcCCCH-HHCC----EEEEECC
Confidence 3457899999999999999985 2222 3566654
No 35
>PLN03172 chalcone synthase family protein; Provisional
Probab=92.04 E-value=0.39 Score=35.15 Aligned_cols=100 Identities=9% Similarity=0.055 Sum_probs=51.8
Q ss_pred cEEEEecceeCCCCC-CHHHHHHHHH---cC--CCceee-CCC-CCcCCCCcceeeecCC-C--CcC--C----CCChHh
Q psy5298 3 RVVVTGLGIVSPVGT-TRQSAWNAIK---EG--KACVSP-LSE-PEYSKLPCKIAARIEG-L--DLT--A----QFTQSK 65 (109)
Q Consensus 3 ~V~ItG~g~vs~lG~-~~~~~~~~l~---~g--~s~i~~-~~~-~~~~~~~~~~~~~i~~-~--~~~--~----~~~~~~ 65 (109)
+++|.|+|...|--. ..+++.+.+. +. .+.+.. ..+ +...++..++....++ + .+. . .+..+.
T Consensus 16 ~~~I~~igta~P~~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~i~~~sgI~~R~~~~~~~~~~~~~~~~~~~~p~~~~r~ 95 (393)
T PLN03172 16 PATILAIGKATPANCVSQADYPDYYFRITNSEHMTELKEKFKRMCDKSMIKKRYMHLTEEILKENPNMCAYMAPSLDARQ 95 (393)
T ss_pred CeEEEEEEecCCCccccHHHHHHHHHHHhcccCchHHHHHHHHHHHhcCCCceeEeccchhhhhCccccccCCCCHHHHH
Confidence 468999999888764 3444444443 21 111111 111 1234444444433111 1 111 1 122223
Q ss_pred hhcCCHHHHHHHHHHHHHHHHcCCCCCCCCCCCceE-EEEeecC
Q psy5298 66 LRTMSRATAFSLIATREALADAKWNPQNEKQKERTG-VAVGTGM 108 (109)
Q Consensus 66 ~~~~~~~~~~al~a~~eAl~~agl~~~~~~~~~r~g-v~iGt~~ 108 (109)
.........|+..|+++||+++|+++ +.+. +++.|++
T Consensus 96 ~~~~~~a~~La~~Aa~~aL~~ag~~~------~dId~ii~~t~t 133 (393)
T PLN03172 96 DMVVVEVPKLGKEAAAKAIKEWGQPK------SKITHLVFCTTS 133 (393)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCH------HHCCEEEEEccC
Confidence 33344466899999999999999875 3444 4556654
No 36
>cd00327 cond_enzymes Condensing enzymes; Family of enzymes that catalyze a (decarboxylating or non-decarboxylating) Claisen-like condensation reaction. Members are share strong structural similarity, and are involved in the synthesis and degradation of fatty acids, and the production of polyketides, a diverse group of natural products.
Probab=91.79 E-value=0.51 Score=31.66 Aligned_cols=32 Identities=34% Similarity=0.387 Sum_probs=26.7
Q ss_pred HHHHHHHHHHHHHHHcCCCCCCCCCCCceEEEEeecC
Q psy5298 72 ATAFSLIATREALADAKWNPQNEKQKERTGVAVGTGM 108 (109)
Q Consensus 72 ~~~~al~a~~eAl~~agl~~~~~~~~~r~gv~iGt~~ 108 (109)
...++..|+++||+++|+++ .+..++++|++.
T Consensus 7 ~~~l~~~A~~~al~~ag~~~-----~~i~~li~~~~~ 38 (254)
T cd00327 7 ASELGFEAAEQAIADAGLSK-----GPIVGVIVGTTG 38 (254)
T ss_pred HHHHHHHHHHHHHHHcCCCC-----CCceEEEEEECC
Confidence 56889999999999999874 367789999875
No 37
>PLN03171 chalcone synthase-like protein; Provisional
Probab=91.60 E-value=0.47 Score=34.77 Aligned_cols=23 Identities=13% Similarity=0.131 Sum_probs=19.6
Q ss_pred CCHHHHHHHHHHHHHHHHcCCCC
Q psy5298 69 MSRATAFSLIATREALADAKWNP 91 (109)
Q Consensus 69 ~~~~~~~al~a~~eAl~~agl~~ 91 (109)
......|+..|+++||+++|+++
T Consensus 105 ~~~a~~la~~Aa~~aL~~ag~~~ 127 (399)
T PLN03171 105 ADAVPELAAEAAKKAIAEWGRPA 127 (399)
T ss_pred HHHHHHHHHHHHHHHHHHcCCCH
Confidence 34567799999999999999975
No 38
>PLN03170 chalcone synthase; Provisional
Probab=90.23 E-value=0.53 Score=34.55 Aligned_cols=99 Identities=9% Similarity=0.044 Sum_probs=50.5
Q ss_pred EEEEecceeCCCCCC-HHHHHHHHHcCC-----Cceee-CCC-CCcCCCCcceeeecCC---CCcC--C----CCChHhh
Q psy5298 4 VVVTGLGIVSPVGTT-RQSAWNAIKEGK-----ACVSP-LSE-PEYSKLPCKIAARIEG---LDLT--A----QFTQSKL 66 (109)
Q Consensus 4 V~ItG~g~vs~lG~~-~~~~~~~l~~g~-----s~i~~-~~~-~~~~~~~~~~~~~i~~---~~~~--~----~~~~~~~ 66 (109)
..|.|+|...|-=.= .+++.+-+.+-- +.... +.+ +...++..++....++ .++. . .+..+..
T Consensus 21 ~~i~~i~ta~P~~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~i~~~sgI~~R~~~~~~~~~~~~~~~~~~~~p~~~~r~~ 100 (401)
T PLN03170 21 ATVLAIGTATPANCVHQADYPDYYFRITKSEHMTELKEKFKRMCDKSQIRKRYMHLTEEYLAENPNMCAYMAPSLDARQD 100 (401)
T ss_pred eEEEEEeecCCCccccHHHHHHHHHHHccccCchhHHHHHHHHHHhCCCCceeEeccccchhhCccccccCCCCHHHHHH
Confidence 678899988887643 334444443311 11111 111 2334455554433211 1111 1 1122223
Q ss_pred hcCCHHHHHHHHHHHHHHHHcCCCCCCCCCCCceE-EEEeecC
Q psy5298 67 RTMSRATAFSLIATREALADAKWNPQNEKQKERTG-VAVGTGM 108 (109)
Q Consensus 67 ~~~~~~~~~al~a~~eAl~~agl~~~~~~~~~r~g-v~iGt~~ 108 (109)
....-...|+..|+++||+++|+++ +.+. +++.|++
T Consensus 101 ~~~~~a~~La~~Aa~~AL~~ag~~~------~dId~lI~~T~T 137 (401)
T PLN03170 101 IVVVEVPKLGKAAAQKAIKEWGQPK------SKITHLVFCTTS 137 (401)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCH------HHCCEEEEEccC
Confidence 3334455699999999999999875 3444 4556654
No 39
>PRK08256 lipid-transfer protein; Provisional
Probab=89.74 E-value=0.48 Score=34.47 Aligned_cols=34 Identities=29% Similarity=0.278 Sum_probs=25.4
Q ss_pred HHHHHHHHHHHHHHHHcCCCCCCCCCCCceEEEEe
Q psy5298 71 RATAFSLIATREALADAKWNPQNEKQKERTGVAVG 105 (109)
Q Consensus 71 ~~~~~al~a~~eAl~~agl~~~~~~~~~r~gv~iG 105 (109)
....|+..|+++||+|||+++ ++++...+|.+++
T Consensus 21 ~~~~La~~A~~~Al~dAGl~~-~dID~~~~g~~~~ 54 (391)
T PRK08256 21 DYPDMAAEAGRAALADAGIDY-DAVQQAYVGYVYG 54 (391)
T ss_pred CHHHHHHHHHHHHHHHcCCCh-HHCCeeEEEEEeC
Confidence 357899999999999999986 4455555555554
No 40
>PLN03173 chalcone synthase; Provisional
Probab=87.76 E-value=0.73 Score=33.72 Aligned_cols=34 Identities=9% Similarity=0.020 Sum_probs=24.2
Q ss_pred CCHHHHHHHHHHHHHHHHcCCCCCCCCCCCceE-EEEeecC
Q psy5298 69 MSRATAFSLIATREALADAKWNPQNEKQKERTG-VAVGTGM 108 (109)
Q Consensus 69 ~~~~~~~al~a~~eAl~~agl~~~~~~~~~r~g-v~iGt~~ 108 (109)
......|+..|+++||+++|+++ +.+. +++.|++
T Consensus 99 ~~~a~~La~~Aa~~AL~~ag~~~------~dId~li~~t~t 133 (391)
T PLN03173 99 VVEVPKLGKEAAAKAIKEWGQPK------SKITHLVFCTTS 133 (391)
T ss_pred HHHHHHHHHHHHHHHHHHcCCCH------HHCCEEEEEccC
Confidence 34456799999999999999875 3343 4555554
No 41
>PRK06289 acetyl-CoA acetyltransferase; Provisional
Probab=85.51 E-value=1.3 Score=32.44 Aligned_cols=31 Identities=19% Similarity=0.138 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHHHHHcCCCCCCCCCCCceEEEEeec
Q psy5298 72 ATAFSLIATREALADAKWNPQNEKQKERTGVAVGTG 107 (109)
Q Consensus 72 ~~~~al~a~~eAl~~agl~~~~~~~~~r~gv~iGt~ 107 (109)
...|+..|+++||+|||+++ ++++ ++++|++
T Consensus 26 ~~eLa~eA~~~AL~dAgl~~-~dID----~vi~g~~ 56 (403)
T PRK06289 26 FADLTREVVDGTLAAAGVDA-DDIE----VVHVGNF 56 (403)
T ss_pred HHHHHHHHHHHHHHHcCCCH-HHCC----EEEEEec
Confidence 46889999999999999986 3333 4666654
No 42
>PRK05790 putative acyltransferase; Provisional
Probab=84.94 E-value=1.3 Score=32.19 Aligned_cols=31 Identities=26% Similarity=0.322 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHHHHHcCCCCCCCCCCCceEEEEeec
Q psy5298 72 ATAFSLIATREALADAKWNPQNEKQKERTGVAVGTG 107 (109)
Q Consensus 72 ~~~~al~a~~eAl~~agl~~~~~~~~~r~gv~iGt~ 107 (109)
...|+..|+++||+|||+++ ++++ ++++|+.
T Consensus 26 ~~~La~~A~~~AL~dAgl~~-~dID----~vi~g~~ 56 (393)
T PRK05790 26 AVELGAIVIKAALERAGVPP-EQVD----EVIMGQV 56 (393)
T ss_pred HHHHHHHHHHHHHHHcCCCH-HHCC----eEEEEEe
Confidence 46788999999999999986 3333 4666653
No 43
>PRK06064 acetyl-CoA acetyltransferase; Provisional
Probab=84.80 E-value=1.4 Score=31.93 Aligned_cols=31 Identities=26% Similarity=0.255 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHHHHHcCCCCCCCCCCCceEEEEeec
Q psy5298 72 ATAFSLIATREALADAKWNPQNEKQKERTGVAVGTG 107 (109)
Q Consensus 72 ~~~~al~a~~eAl~~agl~~~~~~~~~r~gv~iGt~ 107 (109)
...|+..|+++||+|+|+++ ++++ ++++|++
T Consensus 22 ~~eLa~~a~~~Al~dagl~~-~~Id----~vi~g~~ 52 (389)
T PRK06064 22 LRDLAVEAGLEALEDAGIDG-KDID----AMYVGNM 52 (389)
T ss_pred HHHHHHHHHHHHHHHcCCCH-HHCC----EEEEEec
Confidence 46788999999999999985 3222 5677765
No 44
>PRK12578 acetyl-CoA acetyltransferase; Provisional
Probab=82.33 E-value=2 Score=31.17 Aligned_cols=31 Identities=26% Similarity=0.314 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHHHHHcCCCCCCCCCCCceEEEEeec
Q psy5298 72 ATAFSLIATREALADAKWNPQNEKQKERTGVAVGTG 107 (109)
Q Consensus 72 ~~~~al~a~~eAl~~agl~~~~~~~~~r~gv~iGt~ 107 (109)
...|+..|+++||+|||+++ ++++ ++++|++
T Consensus 21 ~~eLa~~A~~~AL~dAgi~~-~dID----~vi~g~~ 51 (385)
T PRK12578 21 VQELAWESIKEALNDAGVSQ-TDIE----LVVVGST 51 (385)
T ss_pred HHHHHHHHHHHHHHHcCCCH-HHCC----EEEEEec
Confidence 46789999999999999985 3222 4666654
No 45
>PLN03168 chalcone synthase; Provisional
Probab=81.44 E-value=1.3 Score=32.34 Aligned_cols=37 Identities=11% Similarity=0.083 Sum_probs=25.9
Q ss_pred hcCCHHHHHHHHHHHHHHHHcCCCCCCCCCCCceEEEEeecC
Q psy5298 67 RTMSRATAFSLIATREALADAKWNPQNEKQKERTGVAVGTGM 108 (109)
Q Consensus 67 ~~~~~~~~~al~a~~eAl~~agl~~~~~~~~~r~gv~iGt~~ 108 (109)
....-...|+..|+++||+++|+++ + +=.-+|+.|++
T Consensus 96 ~~~~~a~~La~~Aa~~AL~~ag~~~-~----dId~lI~~T~T 132 (389)
T PLN03168 96 IVVVQVPKLAAEAAQKAIKEWGGRK-S----DITHIVFATTS 132 (389)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCH-H----HCCEEEEECCC
Confidence 3344566788999999999999885 2 22345666665
No 46
>PRK07516 acetyl-CoA acetyltransferase; Provisional
Probab=80.54 E-value=2.6 Score=30.63 Aligned_cols=31 Identities=26% Similarity=0.321 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHHHHHcCCCCCCCCCCCceEEEEeec
Q psy5298 72 ATAFSLIATREALADAKWNPQNEKQKERTGVAVGTG 107 (109)
Q Consensus 72 ~~~~al~a~~eAl~~agl~~~~~~~~~r~gv~iGt~ 107 (109)
...|+..|+++||+++|+++ ++++ +|++|+.
T Consensus 22 ~~eL~~eA~~~AL~dAgl~~-~dId----~vi~g~~ 52 (389)
T PRK07516 22 LESLIVRVAREALAHAGIAA-GDVD----GIFLGHF 52 (389)
T ss_pred HHHHHHHHHHHHHHHcCCCH-HHCC----EEEEEEe
Confidence 35788999999999999985 3222 5677754
No 47
>KOG3308|consensus
Probab=80.14 E-value=2.7 Score=28.38 Aligned_cols=40 Identities=10% Similarity=0.099 Sum_probs=33.0
Q ss_pred CCcEEEEecceeCCCCCC-HHHHHHHHHcCCCceeeCCCCC
Q psy5298 1 MKRVVVTGLGIVSPVGTT-RQSAWNAIKEGKACVSPLSEPE 40 (109)
Q Consensus 1 ~~~V~ItG~g~vs~lG~~-~~~~~~~l~~g~s~i~~~~~~~ 40 (109)
|+++.|+|++++|.-|.+ .......++.|.+-|...+.+-
T Consensus 1 s~K~~ivgiSG~TnsGKTTLak~l~~~f~~~~lIhqDDFyK 41 (225)
T KOG3308|consen 1 SMKTLIVGISGCTNSGKTTLAKSLHRFFPGCSLIHQDDFYK 41 (225)
T ss_pred CceEEEEEeecccCCCHhHHHHHHHHHccCCeeeccccccC
Confidence 678999999999999974 7788888888888777766553
No 48
>PF00195 Chal_sti_synt_N: Chalcone and stilbene synthases, N-terminal domain; InterPro: IPR001099 Synonym(s): Chalcone synthase, Flavonone synthase, 6'-deoxychalcone synthase Naringenin-chalcone synthases (2.3.1.74 from EC) and stilbene synthases (STS) (formerly known as resveratrol synthases) are related plant enzymes. CHS is an important enzyme in flavanoid biosynthesis and STS is a key enzyme in stilbene-type phyloalexin biosynthesis. Both enzymes catalyse the addition of three molecules of malonyl-CoA to a starter CoA ester (a typical example is 4-coumaroyl-CoA), producing either a chalcone (with CHS) or stilbene (with STS) []. These enzymes have a conserved cysteine residue, located in the central section of the protein sequence, which is essential for the catalytic activity of both enzymes and probably represents the binding site for the 4-coumaryl-CoA group [].; GO: 0016746 transferase activity, transferring acyl groups, 0009058 biosynthetic process; PDB: 3EUO_B 3EUT_C 3EUQ_D 3E1H_A 3AWK_A 3AWJ_A 2H84_A 3A5S_A 3A5Q_B 3A5R_A ....
Probab=79.88 E-value=2.5 Score=28.78 Aligned_cols=35 Identities=26% Similarity=0.252 Sum_probs=24.5
Q ss_pred CHHHHHHHHHHHHHHHHcCCCCCCCCCCCceEEEEeecCC
Q psy5298 70 SRATAFSLIATREALADAKWNPQNEKQKERTGVAVGTGMI 109 (109)
Q Consensus 70 ~~~~~~al~a~~eAl~~agl~~~~~~~~~r~gv~iGt~~~ 109 (109)
.-...|+..|+++||+++|+++ .+=+-+|+-||+|
T Consensus 98 ~~a~~L~~~Aa~~AL~~~g~~~-----~dIthlv~vs~TG 132 (226)
T PF00195_consen 98 EEAPPLAEEAARKALAEAGLDP-----SDITHLVTVSCTG 132 (226)
T ss_dssp HHHHHHHHHHHHHHHHHHTS-G-----GGECEEEEEESSS
T ss_pred HHHHHHHHHHHHHHHHHcCCCC-----cccceEEEEecCC
Confidence 3456688999999999999875 2445566666664
No 49
>PRK05656 acetyl-CoA acetyltransferase; Provisional
Probab=78.27 E-value=3.3 Score=30.24 Aligned_cols=31 Identities=19% Similarity=0.294 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHHHHHcCCCCCCCCCCCceEEEEeec
Q psy5298 72 ATAFSLIATREALADAKWNPQNEKQKERTGVAVGTG 107 (109)
Q Consensus 72 ~~~~al~a~~eAl~~agl~~~~~~~~~r~gv~iGt~ 107 (109)
...|+..|+++||+++|+++ ++++ .|++|+.
T Consensus 26 ~~~La~~A~~~AL~~agl~~-~dID----~vi~g~~ 56 (393)
T PRK05656 26 AVELGAAVIRRLLEQTGLDP-AQVD----EVILGQV 56 (393)
T ss_pred HHHHHHHHHHHHHHHcCCCH-HHCC----EEEEEEe
Confidence 46788999999999999986 3332 5666654
No 50
>PRK06445 acetyl-CoA acetyltransferase; Provisional
Probab=77.88 E-value=3.4 Score=30.19 Aligned_cols=31 Identities=10% Similarity=0.260 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHHHHHcCCCCCCCCCCCceEEEEeec
Q psy5298 72 ATAFSLIATREALADAKWNPQNEKQKERTGVAVGTG 107 (109)
Q Consensus 72 ~~~~al~a~~eAl~~agl~~~~~~~~~r~gv~iGt~ 107 (109)
...|+..++++||+++|+++ ++++ .+++|+.
T Consensus 32 ~~~L~~~a~~~AL~~agl~~-~dID----~vi~g~~ 62 (394)
T PRK06445 32 PEELAAMLINRLIEKTGIKP-EEID----DIITGCA 62 (394)
T ss_pred HHHHHHHHHHHHHHHcCCCH-HHCC----eeEEEee
Confidence 35788899999999999986 3343 4566653
No 51
>cd00751 thiolase Thiolase are ubiquitous enzymes that catalyze the reversible thiolytic cleavage of 3-ketoacyl-CoA into acyl-CoA and acetyl-CoA, a 2-step reaction involving a covalent intermediate formed with a catalytic cysteine. They are found in prokaryotes and eukaryotes (cytosol, microbodies and mitochondria). There are 2 functional different classes: thiolase-I (3-ketoacyl-CoA thiolase) and thiolase-II (acetoacetyl-CoA thiolase). Thiolase-I can cleave longer fatty acid molecules and plays an important role in the beta-oxidative degradation of fatty acids. Thiolase-II has a high substrate specificity. Although it can cleave acetoacyl-CoA, its main function is the synthesis of acetoacyl-CoA from two molecules of acetyl-CoA, which gives it importance in several biosynthetic pathways.
Probab=77.86 E-value=3.9 Score=29.73 Aligned_cols=31 Identities=23% Similarity=0.318 Sum_probs=22.7
Q ss_pred HHHHHHHHHHHHHHHcCCCCCCCCCCCceEEEEeec
Q psy5298 72 ATAFSLIATREALADAKWNPQNEKQKERTGVAVGTG 107 (109)
Q Consensus 72 ~~~~al~a~~eAl~~agl~~~~~~~~~r~gv~iGt~ 107 (109)
...|+..|+++||+|+|+++ ++++ ++++|+.
T Consensus 22 ~~~La~~A~~~AL~dAgl~~-~dID----~vi~~~~ 52 (386)
T cd00751 22 ADDLGAAVIKALLERAGLDP-EEVD----DVIMGNV 52 (386)
T ss_pred HHHHHHHHHHHHHHhcCCCH-HHCC----EEEEEec
Confidence 47889999999999999985 3322 4556644
No 52
>TIGR01930 AcCoA-C-Actrans acetyl-CoA acetyltransferases. This model represents a large family of enzymes which catalyze the thiolysis of a linear fatty acid CoA (or acetoacetyl-CoA) using a second CoA molecule to produce acetyl-CoA and a CoA-ester product two carbons shorter (or, alternatively, the condensation of two molecules of acetyl-CoA to produce acetoacetyl-CoA and CoA). This enzyme is also known as "thiolase", "3-ketoacyl-CoA thiolase", "beta-ketothiolase" and "Fatty oxidation complex beta subunit". When catalyzing the degradative reaction on fatty acids the corresponding EC number is 2.3.1.16. The condensation reaction corresponds to 2.3.1.9. Note that the enzymes which catalyze the condensation are generally not involved in fatty acid biosynthesis, which is carried out by a decarboxylating condensation of acetyl and malonyl esters of acyl carrier proteins. Rather, this activity may produce acetoacetyl-CoA for pathways such as IPP biosynthesis in the absence of sufficient fatt
Probab=76.75 E-value=4 Score=29.73 Aligned_cols=31 Identities=19% Similarity=0.243 Sum_probs=22.7
Q ss_pred HHHHHHHHHHHHHHHcCCCCCCCCCCCceEEEEeec
Q psy5298 72 ATAFSLIATREALADAKWNPQNEKQKERTGVAVGTG 107 (109)
Q Consensus 72 ~~~~al~a~~eAl~~agl~~~~~~~~~r~gv~iGt~ 107 (109)
...|+..|+++||+|||+++ ++++ ++++|+.
T Consensus 21 ~~~La~~A~~~Al~dAgl~~-~dID----~vv~g~~ 51 (386)
T TIGR01930 21 AEDLGAAVIKELLERNPLDP-ELID----DVIFGNV 51 (386)
T ss_pred HHHHHHHHHHHHHHHcCCCH-HHCC----EEEEEec
Confidence 47889999999999999985 3232 4556543
No 53
>PRK12880 3-oxoacyl-(acyl carrier protein) synthase III; Reviewed
Probab=76.42 E-value=3.2 Score=29.86 Aligned_cols=21 Identities=10% Similarity=0.042 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHHHHHHcCCCC
Q psy5298 71 RATAFSLIATREALADAKWNP 91 (109)
Q Consensus 71 ~~~~~al~a~~eAl~~agl~~ 91 (109)
....|+..|+++||+++|+++
T Consensus 59 ~~~~la~~Aa~~aL~~a~~~~ 79 (353)
T PRK12880 59 CVSDLGKHAANTLLQGLNIDK 79 (353)
T ss_pred CHHHHHHHHHHHHHHHcCCCH
Confidence 367899999999999999885
No 54
>PRK06205 acetyl-CoA acetyltransferase; Provisional
Probab=75.81 E-value=4.3 Score=29.80 Aligned_cols=31 Identities=19% Similarity=0.329 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHHHHHcCCCCCCCCCCCceEEEEeec
Q psy5298 72 ATAFSLIATREALADAKWNPQNEKQKERTGVAVGTG 107 (109)
Q Consensus 72 ~~~~al~a~~eAl~~agl~~~~~~~~~r~gv~iGt~ 107 (109)
...|+..|+++||+++|+++ ++++ .+++|+.
T Consensus 26 ~~eLa~~A~~~AL~~agl~~-~dID----~vv~g~~ 56 (404)
T PRK06205 26 AEELAATVIRALVERTGIDP-ARID----DVIFGQG 56 (404)
T ss_pred HHHHHHHHHHHHHHHcCCCH-HHCC----EEEEEec
Confidence 35788899999999999986 3332 5667754
No 55
>PRK07204 3-oxoacyl-(acyl carrier protein) synthase III; Reviewed
Probab=75.71 E-value=3.8 Score=28.83 Aligned_cols=20 Identities=25% Similarity=0.292 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHHHHHcCCCC
Q psy5298 72 ATAFSLIATREALADAKWNP 91 (109)
Q Consensus 72 ~~~~al~a~~eAl~~agl~~ 91 (109)
...|+..|+++||+++|+.+
T Consensus 52 ~~~la~~Aa~~aL~~ag~~~ 71 (329)
T PRK07204 52 SSYMGAEAAKKAVEDAKLTL 71 (329)
T ss_pred HHHHHHHHHHHHHHHcCCCH
Confidence 56799999999999999886
No 56
>PRK08170 acetyl-CoA acetyltransferase; Provisional
Probab=75.71 E-value=4.4 Score=29.99 Aligned_cols=31 Identities=23% Similarity=0.430 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHHHHHcCCCCCCCCCCCceEEEEeec
Q psy5298 72 ATAFSLIATREALADAKWNPQNEKQKERTGVAVGTG 107 (109)
Q Consensus 72 ~~~~al~a~~eAl~~agl~~~~~~~~~r~gv~iGt~ 107 (109)
...|+..|+++||+|+|+++ ++++ +|++|+.
T Consensus 27 ~~~L~~~A~~~Al~dAgl~~-~dID----~vi~g~~ 57 (426)
T PRK08170 27 ASDLAVAAGRALLNRQPFAP-DDLD----EVILGCA 57 (426)
T ss_pred HHHHHHHHHHHHHHHcCCCH-HHCC----EEEEEec
Confidence 46788999999999999985 3222 5666654
No 57
>TIGR00747 fabH 3-oxoacyl-(acyl-carrier-protein) synthase III. Active site residues include Cys112, His244 and Asn274 of E. coli FabH. Cys-112 is the site of acyl group attachment.
Probab=75.65 E-value=3.8 Score=28.62 Aligned_cols=20 Identities=15% Similarity=0.298 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHHHHHcCCCC
Q psy5298 72 ATAFSLIATREALADAKWNP 91 (109)
Q Consensus 72 ~~~~al~a~~eAl~~agl~~ 91 (109)
...|+..|+++||+++|+++
T Consensus 51 ~~~la~~A~~~al~~agl~~ 70 (318)
T TIGR00747 51 SSTMGFEAAKRAIENAGISK 70 (318)
T ss_pred HHHHHHHHHHHHHHHcCCCH
Confidence 46789999999999999875
No 58
>cd00829 SCP-x_thiolase Thiolase domain associated with sterol carrier protein (SCP)-x isoform and related proteins; SCP-2 has multiple roles in intracellular lipid circulation and metabolism. The N-terminal presequence in the SCP-x isoform represents a peroxisomal 3-ketacyl-Coa thiolase specific for branched-chain acyl CoAs, which is proteolytically cleaved from the sterol carrier protein.
Probab=75.37 E-value=3.7 Score=29.46 Aligned_cols=31 Identities=32% Similarity=0.440 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHHHHHcCCCCCCCCCCCceEEEEeec
Q psy5298 72 ATAFSLIATREALADAKWNPQNEKQKERTGVAVGTG 107 (109)
Q Consensus 72 ~~~~al~a~~eAl~~agl~~~~~~~~~r~gv~iGt~ 107 (109)
...|+..|+++||+|+|+++ + +--++++|++
T Consensus 16 ~~eL~~~A~~~Al~dagl~~-~----~Id~vi~g~~ 46 (375)
T cd00829 16 PLELAAEAARAALDDAGLEP-A----DIDAVVVGNA 46 (375)
T ss_pred HHHHHHHHHHHHHHHcCCCH-H----HCCEEEEecc
Confidence 57889999999999999975 2 2235666654
No 59
>TIGR00748 HMG_CoA_syn_Arc hydroxymethylglutaryl-CoA synthase, putative. Thus, although there is no experimental evidence supporting this name, the bioinformatics-based conclusion appears to be sound.
Probab=75.22 E-value=3.6 Score=29.45 Aligned_cols=20 Identities=35% Similarity=0.504 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHHHHHcCCCC
Q psy5298 72 ATAFSLIATREALADAKWNP 91 (109)
Q Consensus 72 ~~~~al~a~~eAl~~agl~~ 91 (109)
...|+..|+++||+++|+++
T Consensus 50 ~~~la~~Aa~~aL~~agl~~ 69 (345)
T TIGR00748 50 TATIGVEAARNALKRAKIDP 69 (345)
T ss_pred HHHHHHHHHHHHHHHcCCCH
Confidence 56899999999999999985
No 60
>PRK09051 beta-ketothiolase; Provisional
Probab=74.86 E-value=4.9 Score=29.47 Aligned_cols=31 Identities=32% Similarity=0.377 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHHHHHcCCCCCCCCCCCceEEEEeec
Q psy5298 72 ATAFSLIATREALADAKWNPQNEKQKERTGVAVGTG 107 (109)
Q Consensus 72 ~~~~al~a~~eAl~~agl~~~~~~~~~r~gv~iGt~ 107 (109)
...|+..|+++||+++|+++ ++++ .|++|++
T Consensus 27 ~~eL~~~A~~~AL~~agi~~-~dID----~vi~g~~ 57 (394)
T PRK09051 27 PTDLGATVVREALARAGVDP-DQVG----HVVFGHV 57 (394)
T ss_pred HHHHHHHHHHHHHHHcCCCH-HHcC----EEEEeee
Confidence 36788899999999999986 3222 3566654
No 61
>PRK06366 acetyl-CoA acetyltransferase; Provisional
Probab=74.21 E-value=5.4 Score=29.11 Aligned_cols=30 Identities=30% Similarity=0.384 Sum_probs=22.5
Q ss_pred HHHHHHHHHHHHHHHcCCCCCCCCCCCceEEEEee
Q psy5298 72 ATAFSLIATREALADAKWNPQNEKQKERTGVAVGT 106 (109)
Q Consensus 72 ~~~~al~a~~eAl~~agl~~~~~~~~~r~gv~iGt 106 (109)
...|+..++++||+|+|+++ ++++ ++++|+
T Consensus 26 ~~~L~~~a~~~al~dagi~~-~dID----~vi~g~ 55 (388)
T PRK06366 26 APQLGGAAIKAVIDDAKLDP-ALVQ----EVIMGN 55 (388)
T ss_pred HHHHHHHHHHHHHHHcCCCH-HHCC----EEEEEe
Confidence 46788999999999999986 3333 466664
No 62
>cd00831 CHS_like Chalcone and stilbene synthases; plant-specific polyketide synthases (PKS) and related enzymes, also called type III PKSs. PKS generate an array of different products, dependent on the nature of the starter molecule. They share a common chemical strategy, after the starter molecule is loaded onto the active site cysteine, a carboxylative condensation reation extends the polyketide chain. Plant-specific PKS are dimeric iterative PKSs, using coenzyme A esters to deliver substrate to the active site, but they differ in the choice of starter molecule and the number of condensation reactions.
Probab=74.09 E-value=3.6 Score=29.46 Aligned_cols=24 Identities=29% Similarity=0.390 Sum_probs=20.2
Q ss_pred cCCHHHHHHHHHHHHHHHHcCCCC
Q psy5298 68 TMSRATAFSLIATREALADAKWNP 91 (109)
Q Consensus 68 ~~~~~~~~al~a~~eAl~~agl~~ 91 (109)
.......|+..|+++||+++|+++
T Consensus 81 ~~~~~~~la~~Aa~~aL~~a~~~~ 104 (361)
T cd00831 81 ALEEARELAEEAARGALDEAGLRP 104 (361)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCH
Confidence 344578899999999999999875
No 63
>PRK07108 acetyl-CoA acetyltransferase; Provisional
Probab=73.34 E-value=4.9 Score=29.44 Aligned_cols=31 Identities=23% Similarity=0.349 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHHHHHcCCCCCCCCCCCceEEEEeec
Q psy5298 72 ATAFSLIATREALADAKWNPQNEKQKERTGVAVGTG 107 (109)
Q Consensus 72 ~~~~al~a~~eAl~~agl~~~~~~~~~r~gv~iGt~ 107 (109)
...|+..|+++||+++|+++ ++++ .+++|+.
T Consensus 27 ~~dL~~~A~~~aL~~agi~~-~~ID----~vi~G~~ 57 (392)
T PRK07108 27 GATLGGHVVQHAVERAKLDP-AEVE----DVIMGCA 57 (392)
T ss_pred HHHHHHHHHHHHHHHcCCCH-HHCC----cEEEEEe
Confidence 46788999999999999986 3333 2666654
No 64
>PLN02326 3-oxoacyl-[acyl-carrier-protein] synthase III
Probab=73.29 E-value=4.5 Score=29.33 Aligned_cols=20 Identities=30% Similarity=0.391 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHHHHHcCCCC
Q psy5298 72 ATAFSLIATREALADAKWNP 91 (109)
Q Consensus 72 ~~~~al~a~~eAl~~agl~~ 91 (109)
...|+..|+++||+++|+++
T Consensus 96 ~~~La~~Aa~~aL~~agi~~ 115 (379)
T PLN02326 96 LTSLAVEAAKKALEMAGVDP 115 (379)
T ss_pred HHHHHHHHHHHHHHHcCCCH
Confidence 57899999999999999875
No 65
>PRK07937 lipid-transfer protein; Provisional
Probab=72.83 E-value=5.3 Score=28.87 Aligned_cols=23 Identities=9% Similarity=0.020 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHHHHcCCCCCCCCC
Q psy5298 73 TAFSLIATREALADAKWNPQNEKQ 96 (109)
Q Consensus 73 ~~~al~a~~eAl~~agl~~~~~~~ 96 (109)
..|+..|+.+||+|||+++ ++++
T Consensus 25 ~el~~eA~~~Al~DAgl~~-~dID 47 (352)
T PRK07937 25 VEMLMPCFAELYAELGITK-SDIG 47 (352)
T ss_pred HHHHHHHHHHHHHHcCCCH-HHCC
Confidence 5788999999999999986 3343
No 66
>PRK12879 3-oxoacyl-(acyl carrier protein) synthase III; Reviewed
Probab=72.64 E-value=4.6 Score=28.27 Aligned_cols=20 Identities=25% Similarity=0.351 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHHHHHcCCCC
Q psy5298 72 ATAFSLIATREALADAKWNP 91 (109)
Q Consensus 72 ~~~~al~a~~eAl~~agl~~ 91 (109)
...|+..|+++||+++|+++
T Consensus 53 ~~~la~~A~~~al~~ag~~~ 72 (325)
T PRK12879 53 TSDLAIKAAERALARAGLDA 72 (325)
T ss_pred HHHHHHHHHHHHHHHcCCCH
Confidence 56889999999999999875
No 67
>cd00830 KAS_III Ketoacyl-acyl carrier protein synthase III (KASIII) initiates the elongation in type II fatty acid synthase systems. It is found in bacteria and plants. Elongation of fatty acids in the type II systems occurs by Claisen condensation of malonyl-acyl carrier protein (ACP) with acyl-ACP. KASIII initiates this process by specifically using acetyl-CoA over acyl-CoA.
Probab=72.40 E-value=4.8 Score=28.00 Aligned_cols=20 Identities=25% Similarity=0.401 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHHHHHcCCCC
Q psy5298 72 ATAFSLIATREALADAKWNP 91 (109)
Q Consensus 72 ~~~~al~a~~eAl~~agl~~ 91 (109)
...|+..|+++||+++|+++
T Consensus 50 ~~~la~~A~~~al~~ag~~~ 69 (320)
T cd00830 50 TSDLAVEAAKKALEDAGIDA 69 (320)
T ss_pred HHHHHHHHHHHHHHHcCCCH
Confidence 57889999999999999875
No 68
>PRK08235 acetyl-CoA acetyltransferase; Provisional
Probab=71.62 E-value=6.4 Score=28.83 Aligned_cols=31 Identities=35% Similarity=0.385 Sum_probs=22.7
Q ss_pred HHHHHHHHHHHHHHHcCCCCCCCCCCCceEEEEeec
Q psy5298 72 ATAFSLIATREALADAKWNPQNEKQKERTGVAVGTG 107 (109)
Q Consensus 72 ~~~~al~a~~eAl~~agl~~~~~~~~~r~gv~iGt~ 107 (109)
...|+..|+++||+++|+++ ++++ .+++|+.
T Consensus 26 ~~eLa~~A~~~aL~~agl~~-~dID----~vi~g~~ 56 (393)
T PRK08235 26 ATELGGIAIKEALERANVSA-EDVE----EVIMGTV 56 (393)
T ss_pred HHHHHHHHHHHHHHHcCCCH-HHCC----EEEEEec
Confidence 36788899999999999986 3222 4666654
No 69
>PRK08304 stage V sporulation protein AD; Validated
Probab=71.50 E-value=4.8 Score=29.07 Aligned_cols=20 Identities=20% Similarity=0.126 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHHHHHcCCCC
Q psy5298 72 ATAFSLIATREALADAKWNP 91 (109)
Q Consensus 72 ~~~~al~a~~eAl~~agl~~ 91 (109)
...|+..|+++||++||+++
T Consensus 56 eseLa~eAa~~ALekAGI~~ 75 (337)
T PRK08304 56 ERKMMEDAIQQALQKANLKK 75 (337)
T ss_pred HHHHHHHHHHHHHHHcCCCH
Confidence 46799999999999999985
No 70
>PLN03169 chalcone synthase family protein; Provisional
Probab=71.44 E-value=5.4 Score=29.20 Aligned_cols=21 Identities=10% Similarity=0.033 Sum_probs=18.4
Q ss_pred HHHHHHHHHHHHHHHHcCCCC
Q psy5298 71 RATAFSLIATREALADAKWNP 91 (109)
Q Consensus 71 ~~~~~al~a~~eAl~~agl~~ 91 (109)
....|+..|+++||+++|+++
T Consensus 105 ~~~~La~~Aa~~aL~~ag~~~ 125 (391)
T PLN03169 105 AVTQMAVEASLACIKEWGRPV 125 (391)
T ss_pred HHHHHHHHHHHHHHHHhCCCH
Confidence 467799999999999999875
No 71
>PRK06157 acetyl-CoA acetyltransferase; Validated
Probab=71.34 E-value=6.3 Score=28.88 Aligned_cols=30 Identities=37% Similarity=0.371 Sum_probs=22.7
Q ss_pred HHHHHHHHHHHHHHHcCCCCCCCCCCCceEEEEee
Q psy5298 72 ATAFSLIATREALADAKWNPQNEKQKERTGVAVGT 106 (109)
Q Consensus 72 ~~~~al~a~~eAl~~agl~~~~~~~~~r~gv~iGt 106 (109)
...|+..++++||+|+||++ ++++ ++++|+
T Consensus 27 ~~~L~~ea~~~AL~dagl~~-~dID----~v~vg~ 56 (398)
T PRK06157 27 AEDLMVEAFLEALADAGIEP-KDID----AAWFGT 56 (398)
T ss_pred HHHHHHHHHHHHHHHcCCCH-HHCC----EEEEEe
Confidence 46888999999999999986 3332 466665
No 72
>PRK09258 3-oxoacyl-(acyl carrier protein) synthase III; Reviewed
Probab=71.24 E-value=5.3 Score=28.22 Aligned_cols=20 Identities=35% Similarity=0.433 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHHHHHcCCCC
Q psy5298 72 ATAFSLIATREALADAKWNP 91 (109)
Q Consensus 72 ~~~~al~a~~eAl~~agl~~ 91 (109)
...|+..|+++||+++|+.+
T Consensus 61 ~~~la~~Aa~~aL~~ag~~~ 80 (338)
T PRK09258 61 LSDGAIAAGRKALAEAGIDP 80 (338)
T ss_pred HHHHHHHHHHHHHHHcCCCH
Confidence 56799999999999999875
No 73
>PRK04262 hypothetical protein; Provisional
Probab=70.47 E-value=5.4 Score=28.50 Aligned_cols=20 Identities=30% Similarity=0.444 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHHHHHcCCCC
Q psy5298 72 ATAFSLIATREALADAKWNP 91 (109)
Q Consensus 72 ~~~~al~a~~eAl~~agl~~ 91 (109)
...|+..|+++||+++|+++
T Consensus 51 ~~~la~~Aa~~aL~~ag~~~ 70 (347)
T PRK04262 51 TATIAVEAARNALKRAGIDP 70 (347)
T ss_pred HHHHHHHHHHHHHHHcCCCH
Confidence 56899999999999999875
No 74
>PRK06065 acetyl-CoA acetyltransferase; Provisional
Probab=70.09 E-value=6.3 Score=28.91 Aligned_cols=20 Identities=20% Similarity=0.202 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHHHHHcCCCC
Q psy5298 72 ATAFSLIATREALADAKWNP 91 (109)
Q Consensus 72 ~~~~al~a~~eAl~~agl~~ 91 (109)
...|+..|+++||+|+|+++
T Consensus 29 ~~~L~~~A~~~Al~dagl~~ 48 (392)
T PRK06065 29 PQELAWEAASKALDEAGLEL 48 (392)
T ss_pred HHHHHHHHHHHHHHHcCCCH
Confidence 46788999999999999985
No 75
>PRK06158 thiolase; Provisional
Probab=69.93 E-value=6.3 Score=28.70 Aligned_cols=20 Identities=35% Similarity=0.248 Sum_probs=17.6
Q ss_pred HHHHHHHHHHHHHHHcCCCC
Q psy5298 72 ATAFSLIATREALADAKWNP 91 (109)
Q Consensus 72 ~~~~al~a~~eAl~~agl~~ 91 (109)
...|+..|+++||+|||+++
T Consensus 28 ~~eL~~eA~~~Al~dAgl~~ 47 (384)
T PRK06158 28 AMELLAQAAHRALADAGLTM 47 (384)
T ss_pred HHHHHHHHHHHHHHHcCCCH
Confidence 46788999999999999875
No 76
>PTZ00455 3-ketoacyl-CoA thiolase; Provisional
Probab=69.87 E-value=8.3 Score=28.77 Aligned_cols=20 Identities=10% Similarity=0.094 Sum_probs=17.6
Q ss_pred HHHHHHHHHHHHHHHcCCCC
Q psy5298 72 ATAFSLIATREALADAKWNP 91 (109)
Q Consensus 72 ~~~~al~a~~eAl~~agl~~ 91 (109)
...|+..++++||+++|+++
T Consensus 48 ~~eL~~~a~~~al~~agl~~ 67 (438)
T PTZ00455 48 LEELLATAIQGTLENTGLDG 67 (438)
T ss_pred HHHHHHHHHHHHHHHcCCCH
Confidence 46788999999999999986
No 77
>PRK08313 acetyl-CoA acetyltransferase; Provisional
Probab=69.81 E-value=6.5 Score=28.69 Aligned_cols=20 Identities=30% Similarity=0.135 Sum_probs=17.3
Q ss_pred HHHHHHHHHHHHHHHcCCCC
Q psy5298 72 ATAFSLIATREALADAKWNP 91 (109)
Q Consensus 72 ~~~~al~a~~eAl~~agl~~ 91 (109)
...|+..|+++||+|||+++
T Consensus 24 ~~eL~~eAa~~Al~dAgl~~ 43 (386)
T PRK08313 24 MAGLVREAIDRALADAGLTW 43 (386)
T ss_pred HHHHHHHHHHHHHHHcCCCH
Confidence 35788999999999999975
No 78
>PRK05963 3-oxoacyl-(acyl carrier protein) synthase II; Reviewed
Probab=69.77 E-value=6 Score=27.81 Aligned_cols=20 Identities=25% Similarity=0.182 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHHHHHcCCCC
Q psy5298 72 ATAFSLIATREALADAKWNP 91 (109)
Q Consensus 72 ~~~~al~a~~eAl~~agl~~ 91 (109)
..-|+..|+++||+++|+++
T Consensus 52 ~~~la~~Aa~~aL~~ag~~~ 71 (326)
T PRK05963 52 LSDLAASAGDMALSDAGIER 71 (326)
T ss_pred HHHHHHHHHHHHHHHcCCCH
Confidence 46899999999999999875
No 79
>PRK06059 lipid-transfer protein; Provisional
Probab=69.72 E-value=5.4 Score=29.15 Aligned_cols=20 Identities=35% Similarity=0.453 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHHHHHcCCCC
Q psy5298 72 ATAFSLIATREALADAKWNP 91 (109)
Q Consensus 72 ~~~~al~a~~eAl~~agl~~ 91 (109)
+..|+..|+++||++||+++
T Consensus 23 ~~~La~~A~~~Al~dAgl~~ 42 (399)
T PRK06059 23 FVEYGVVAARAALADAGLDW 42 (399)
T ss_pred HHHHHHHHHHHHHHHcCCCH
Confidence 47889999999999999875
No 80
>CHL00203 fabH 3-oxoacyl-acyl-carrier-protein synthase 3; Provisional
Probab=68.37 E-value=6.4 Score=27.76 Aligned_cols=20 Identities=30% Similarity=0.385 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHHHHHcCCCC
Q psy5298 72 ATAFSLIATREALADAKWNP 91 (109)
Q Consensus 72 ~~~~al~a~~eAl~~agl~~ 91 (109)
...|+..|+++||+++|+++
T Consensus 51 ~~~la~~A~~~aL~~ag~~~ 70 (326)
T CHL00203 51 LTKLAAEAANKALDKAHMDP 70 (326)
T ss_pred HHHHHHHHHHHHHHHcCCCH
Confidence 46799999999999999875
No 81
>PRK06954 acetyl-CoA acetyltransferase; Provisional
Probab=68.31 E-value=8 Score=28.35 Aligned_cols=31 Identities=23% Similarity=0.274 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHHHHHcCCCCCCCCCCCceEEEEeec
Q psy5298 72 ATAFSLIATREALADAKWNPQNEKQKERTGVAVGTG 107 (109)
Q Consensus 72 ~~~~al~a~~eAl~~agl~~~~~~~~~r~gv~iGt~ 107 (109)
...|+..++++||+++|+++ ++++ .+++|+.
T Consensus 31 ~~eL~~~a~~~aL~~Agi~~-~dID----~vi~G~~ 61 (397)
T PRK06954 31 APQLGAAAIAAAVERAGLKP-EQID----EVVMGCV 61 (397)
T ss_pred HHHHHHHHHHHHHHHcCCCH-HHcC----EEEEEec
Confidence 36788999999999999986 3332 3667654
No 82
>TIGR02845 spore_V_AD stage V sporulation protein AD. Bacillus and Clostridium species contain about 10 % dipicolinic acid (pyridine-2,6-dicarboxylic acid) by weight. This protein family, SpoVAD, belongs to the spoVA operon that is suggested to act in the transport of dipicolinic acid (DPA) from the mother cell, where DPA is synthesized, to the forespore, a process essential to sporulation. Members of this protein family are found, so far, in exactly those species believed capable of endospore formation.
Probab=68.26 E-value=6.1 Score=28.46 Aligned_cols=20 Identities=20% Similarity=0.044 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHHHHHcCCCC
Q psy5298 72 ATAFSLIATREALADAKWNP 91 (109)
Q Consensus 72 ~~~~al~a~~eAl~~agl~~ 91 (109)
...|+..|+++||++||+++
T Consensus 50 e~eLa~eAa~~ALekAGL~~ 69 (327)
T TIGR02845 50 ERKLMEDAVNLALKKANLKK 69 (327)
T ss_pred HHHHHHHHHHHHHHHcCCCH
Confidence 35789999999999999985
No 83
>PLN02644 acetyl-CoA C-acetyltransferase
Probab=68.24 E-value=7.7 Score=28.39 Aligned_cols=30 Identities=37% Similarity=0.362 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHHHHHcCCCCCCCCCCCceEEEEee
Q psy5298 72 ATAFSLIATREALADAKWNPQNEKQKERTGVAVGT 106 (109)
Q Consensus 72 ~~~~al~a~~eAl~~agl~~~~~~~~~r~gv~iGt 106 (109)
...|+..++++||+|||+++ ++.+ +|++|+
T Consensus 25 ~~~L~~~a~~~al~dAgl~~-~~ID----~vv~g~ 54 (394)
T PLN02644 25 ATELGSIAIQAALERAGVDP-ALVQ----EVFFGN 54 (394)
T ss_pred HHHHHHHHHHHHHHHcCCCH-HHCC----EEEEEe
Confidence 46788999999999999985 3333 456654
No 84
>PRK07801 acetyl-CoA acetyltransferase; Provisional
Probab=68.05 E-value=8.2 Score=28.04 Aligned_cols=30 Identities=10% Similarity=0.175 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHHHHHcCCCCCCCCCCCceEEEEee
Q psy5298 72 ATAFSLIATREALADAKWNPQNEKQKERTGVAVGT 106 (109)
Q Consensus 72 ~~~~al~a~~eAl~~agl~~~~~~~~~r~gv~iGt 106 (109)
...|+..++++||+|+|+++ ++.+ +|++|+
T Consensus 26 ~~~L~~~a~~~al~dagl~~-~~ID----~vv~g~ 55 (382)
T PRK07801 26 PADLGAHVLKGLVDRTGIDP-AAVD----DVIFGC 55 (382)
T ss_pred HHHHHHHHHHHHHHHcCCCH-HHcC----EEEEEe
Confidence 35688899999999999985 3332 455664
No 85
>PF02801 Ketoacyl-synt_C: Beta-ketoacyl synthase, C-terminal domain; InterPro: IPR014031 Beta-ketoacyl-ACP synthase 2.3.1.41 from EC (KAS) [] is the enzyme that catalyzes the condensation of malonyl-ACP with the growing fatty acid chain. It is found as a component of a number of enzymatic systems, including fatty acid synthetase (FAS), which catalyzes the formation of long-chain fatty acids from acetyl-CoA, malonyl-CoA and NADPH; the multi-functional 6-methysalicylic acid synthase (MSAS) from Penicillium patulum [], which is involved in the biosynthesis of a polyketide antibiotic; polyketide antibiotic synthase enzyme systems; Emericella nidulans multifunctional protein Wa, which is involved in the biosynthesis of conidial green pigment; Rhizobium nodulation protein nodE, which probably acts as a beta-ketoacyl synthase in the synthesis of the nodulation Nod factor fatty acyl chain; and yeast mitochondrial protein CEM1. The condensation reaction is a two step process, first the acyl component of an activated acyl primer is transferred to a cysteine residue of the enzyme and is then condensed with an activated malonyl donor with the concomitant release of carbon dioxide. This entry represents the C-terminal domain of beta-ketoacyl-ACP synthases. The active site is contained in a cleft betweeen N- and C-terminal domains, with residues from both domains contributing to substrate binding and catalysis [].; PDB: 2UV8_B 3HMJ_A 2VKZ_C 4EWG_A 1TQY_H 1E5M_A 1J3N_B 2VZ8_A 2VZ9_B 3O04_A ....
Probab=67.42 E-value=6.2 Score=23.62 Aligned_cols=26 Identities=38% Similarity=0.386 Sum_probs=16.7
Q ss_pred HHHHHHHHHHcCCCCCCCCCCCceEEEEeecC
Q psy5298 77 LIATREALADAKWNPQNEKQKERTGVAVGTGM 108 (109)
Q Consensus 77 l~a~~eAl~~agl~~~~~~~~~r~gv~iGt~~ 108 (109)
..+.++||+++|+++ +.+.+|.+.++
T Consensus 28 ~~~i~~al~~agi~~------~~I~~i~~hg~ 53 (119)
T PF02801_consen 28 ARAIRRALADAGISP------EDIDYIEAHGT 53 (119)
T ss_dssp HHHHHHHHHHHTS-G------GGEEEEE----
T ss_pred HHHHHHHHhhhcccc------ccceeeeeecc
Confidence 456899999999985 57777766544
No 86
>PRK06840 hypothetical protein; Validated
Probab=66.30 E-value=8 Score=27.38 Aligned_cols=20 Identities=25% Similarity=0.453 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHHHHHcCCCC
Q psy5298 72 ATAFSLIATREALADAKWNP 91 (109)
Q Consensus 72 ~~~~al~a~~eAl~~agl~~ 91 (109)
...|+..|+++||+++|+++
T Consensus 53 ~~~la~~Aa~~aL~~ag~~~ 72 (339)
T PRK06840 53 TSDMAIAAAKPALKQAGVDP 72 (339)
T ss_pred HHHHHHHHHHHHHHHcCCCH
Confidence 57889999999999999886
No 87
>PLN02577 hydroxymethylglutaryl-CoA synthase
Probab=65.59 E-value=8 Score=29.16 Aligned_cols=31 Identities=23% Similarity=0.445 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHHHHHcCCCCCCCCCCCceE-EEEeecC
Q psy5298 72 ATAFSLIATREALADAKWNPQNEKQKERTG-VAVGTGM 108 (109)
Q Consensus 72 ~~~~al~a~~eAl~~agl~~~~~~~~~r~g-v~iGt~~ 108 (109)
..-|+..|+++||+++|+++ +.++ |++||.+
T Consensus 53 ~~tmA~~AA~~aL~~agid~------~~IdllivaTeT 84 (459)
T PLN02577 53 VISMSLTVVKSLLEKYNIDP------KQIGRLEVGSET 84 (459)
T ss_pred HHHHHHHHHHHHHHHcCCCH------HHCCEEEEEcCC
Confidence 46899999999999999875 3443 4556554
No 88
>PRK12404 stage V sporulation protein AD; Provisional
Probab=63.71 E-value=8.6 Score=27.76 Aligned_cols=19 Identities=21% Similarity=0.111 Sum_probs=16.9
Q ss_pred HHHHHHHHHHHHHHcCCCC
Q psy5298 73 TAFSLIATREALADAKWNP 91 (109)
Q Consensus 73 ~~~al~a~~eAl~~agl~~ 91 (109)
..|+..|+++||++||+++
T Consensus 55 ~~L~~EA~~~AL~kAGI~~ 73 (334)
T PRK12404 55 RKLLEEACSRAIEKAKLRK 73 (334)
T ss_pred HHHHHHHHHHHHHHcCCCH
Confidence 4689999999999999985
No 89
>PLN02287 3-ketoacyl-CoA thiolase
Probab=63.63 E-value=11 Score=28.23 Aligned_cols=31 Identities=19% Similarity=0.265 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHHHHHcCCCCCCCCCCCceEEEEeec
Q psy5298 72 ATAFSLIATREALADAKWNPQNEKQKERTGVAVGTG 107 (109)
Q Consensus 72 ~~~~al~a~~eAl~~agl~~~~~~~~~r~gv~iGt~ 107 (109)
...|+..|+++||+++|+++ ++++ +|++|+.
T Consensus 71 ~~eLa~eA~~~AL~dAgl~~-~dID----~vv~G~~ 101 (452)
T PLN02287 71 PDDLLAPVLKAVVEKTGLNP-SEVG----DIVVGTV 101 (452)
T ss_pred HHHHHHHHHHHHHHHcCCCH-HHCC----EEEEEee
Confidence 47889999999999999985 3332 3566653
No 90
>PRK09052 acetyl-CoA acetyltransferase; Provisional
Probab=63.53 E-value=12 Score=27.54 Aligned_cols=32 Identities=22% Similarity=0.284 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHHHHHc-CCCCCCCCCCCceEEEEeecC
Q psy5298 72 ATAFSLIATREALADA-KWNPQNEKQKERTGVAVGTGM 108 (109)
Q Consensus 72 ~~~~al~a~~eAl~~a-gl~~~~~~~~~r~gv~iGt~~ 108 (109)
...|+..|+++||+++ |+++ ++++ .|++|+++
T Consensus 31 ~~eLa~~A~~~AL~~a~gl~~-~dID----~vi~g~~~ 63 (399)
T PRK09052 31 PDDLLAHVLRSAVAQVPGLDP-KLIE----DAIVGCAM 63 (399)
T ss_pred HHHHHHHHHHHHHHhccCcCH-HHCC----EEEEEecC
Confidence 4678899999999997 9875 3222 46676543
No 91
>PRK07851 acetyl-CoA acetyltransferase; Provisional
Probab=63.00 E-value=12 Score=27.51 Aligned_cols=29 Identities=17% Similarity=0.349 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHHHHc-CCCCCCCCCCCceEEEEee
Q psy5298 73 TAFSLIATREALADA-KWNPQNEKQKERTGVAVGT 106 (109)
Q Consensus 73 ~~~al~a~~eAl~~a-gl~~~~~~~~~r~gv~iGt 106 (109)
..|+..|+++||+|+ |+++ ++++ ++++|+
T Consensus 28 ~eL~~~A~~~AL~da~gl~~-~dID----~vv~g~ 57 (406)
T PRK07851 28 DDLAAQMVRAALDKVPALDP-TDID----DLMLGC 57 (406)
T ss_pred HHHHHHHHHHHHHhccCCCH-HHCC----EEEEEc
Confidence 678889999999997 9986 3333 455553
No 92
>PLN02932 3-ketoacyl-CoA synthase
Probab=60.77 E-value=11 Score=28.67 Aligned_cols=23 Identities=9% Similarity=0.111 Sum_probs=19.5
Q ss_pred CCHHHHHHHHHHHHHHHHcCCCC
Q psy5298 69 MSRATAFSLIATREALADAKWNP 91 (109)
Q Consensus 69 ~~~~~~~al~a~~eAl~~agl~~ 91 (109)
..-...++..|+++||+++|+++
T Consensus 145 ~~ea~~la~~Aa~~aL~~agi~p 167 (478)
T PLN02932 145 RKETEEVIIGAVDNLFRNTGISP 167 (478)
T ss_pred HHHHHHHHHHHHHHHHHHcCCCH
Confidence 34467899999999999999986
No 93
>PLN02377 3-ketoacyl-CoA synthase
Probab=60.24 E-value=11 Score=28.71 Aligned_cols=33 Identities=21% Similarity=0.226 Sum_probs=24.0
Q ss_pred CHHHHHHHHHHHHHHHHcCCCCCCCCCCCceEEEEeecC
Q psy5298 70 SRATAFSLIATREALADAKWNPQNEKQKERTGVAVGTGM 108 (109)
Q Consensus 70 ~~~~~~al~a~~eAl~~agl~~~~~~~~~r~gv~iGt~~ 108 (109)
.-...++..|+++||+++|+++ +.+.++|-+++
T Consensus 170 ~ea~~l~~~A~~~aL~kaGi~p------~dID~LVv~cS 202 (502)
T PLN02377 170 EEAEQVMFGALDNLFANTNVNP------KDIGILVVNCS 202 (502)
T ss_pred HHHHHHHHHHHHHHHHHcCCCH------HHCCEEEEECC
Confidence 3467889999999999999986 34444444543
No 94
>COG3425 PksG 3-hydroxy-3-methylglutaryl CoA synthase [Lipid metabolism]
Probab=60.20 E-value=10 Score=27.89 Aligned_cols=31 Identities=32% Similarity=0.482 Sum_probs=23.7
Q ss_pred HHHHHHHHHHHHHHHcCCCCCCCCCCCce-EEEEeecC
Q psy5298 72 ATAFSLIATREALADAKWNPQNEKQKERT-GVAVGTGM 108 (109)
Q Consensus 72 ~~~~al~a~~eAl~~agl~~~~~~~~~r~-gv~iGt~~ 108 (109)
..-||+.|++++|.++++++ .++ .|++||..
T Consensus 51 ~vTmaveAA~~~l~r~~~D~------~~Ig~v~vgTES 82 (377)
T COG3425 51 AVTMAVEAARNALKRADIDP------SKIGAVIVGSES 82 (377)
T ss_pred HHHHHHHHHHHHHhccCCCH------HHCceEEEecCC
Confidence 45789999999999998875 566 46666643
No 95
>PRK06816 3-oxoacyl-(acyl carrier protein) synthase III; Reviewed
Probab=59.52 E-value=11 Score=27.27 Aligned_cols=20 Identities=25% Similarity=0.315 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHHHHHcCCCC
Q psy5298 72 ATAFSLIATREALADAKWNP 91 (109)
Q Consensus 72 ~~~~al~a~~eAl~~agl~~ 91 (109)
...|+..|+++||+++|+++
T Consensus 63 ~~~La~~A~~~aL~~agi~~ 82 (378)
T PRK06816 63 NAQMAAEAIRDLLDDAGFSL 82 (378)
T ss_pred HHHHHHHHHHHHHHHcCCCH
Confidence 57899999999999999875
No 96
>PRK08131 acetyl-CoA acetyltransferase; Provisional
Probab=58.40 E-value=17 Score=26.83 Aligned_cols=30 Identities=13% Similarity=0.268 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHHHHcCCCCCCCCCCCceEEEEeec
Q psy5298 73 TAFSLIATREALADAKWNPQNEKQKERTGVAVGTG 107 (109)
Q Consensus 73 ~~~al~a~~eAl~~agl~~~~~~~~~r~gv~iGt~ 107 (109)
..|+..++++||+++|+++ ++++ .+++|+.
T Consensus 27 ~eL~~~a~~~al~~agi~~-~~Id----~v~~G~~ 56 (401)
T PRK08131 27 DDLAATVIRRLLEKSGFPG-DDIE----DVILGCT 56 (401)
T ss_pred HHHHHHHHHHHHHHcCCCH-HHCC----EEEEEec
Confidence 5788899999999999975 3333 3566643
No 97
>PRK08257 acetyl-CoA acetyltransferase; Validated
Probab=56.91 E-value=19 Score=27.34 Aligned_cols=19 Identities=32% Similarity=0.256 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHHHHHcCCC
Q psy5298 72 ATAFSLIATREALADAKWN 90 (109)
Q Consensus 72 ~~~~al~a~~eAl~~agl~ 90 (109)
...|+..|+++||+|||+.
T Consensus 27 ~~~L~~eA~~~Al~DAGl~ 45 (498)
T PRK08257 27 PVDLMAAAARAAAADAGAD 45 (498)
T ss_pred HHHHHHHHHHHHHHhcCCC
Confidence 4678899999999999987
No 98
>cd00826 nondecarbox_cond_enzymes nondecarboxylating condensing enzymes; In general, thiolases catalyze the reversible thiolytic cleavage of 3-ketoacyl-CoA into acyl-CoA and acetyl-CoA, a 2-step reaction involving a covalent intermediate formed with a catalytic cysteine. There are 2 functional different classes: thiolase-I (3-ketoacyl-CoA thiolase) and thiolase-II (acetoacetyl-CoA thiolase). Thiolase-I can cleave longer fatty acid molecules and plays an important role in the beta-oxidative degradation of fatty acids. Thiolase-II has a high substrate specificity. Although it can cleave acetoacyl-CoA, its main function is the synthesis of acetoacyl-CoA from two molecules of acetyl-CoA, which gives it importance in several biosynthetic pathways.
Probab=56.23 E-value=17 Score=26.69 Aligned_cols=32 Identities=19% Similarity=0.061 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHHHHHHcCCCCCCCCCCCceEEEEeec
Q psy5298 71 RATAFSLIATREALADAKWNPQNEKQKERTGVAVGTG 107 (109)
Q Consensus 71 ~~~~~al~a~~eAl~~agl~~~~~~~~~r~gv~iGt~ 107 (109)
....++..|+++||+++++++ ++++ .|++|+.
T Consensus 22 ~~~el~~~a~~~Al~~agl~p-~dID----~vi~g~~ 53 (393)
T cd00826 22 LAHEAGAKAIAAALEPAGVAA-GAVE----EACLGQV 53 (393)
T ss_pred CHHHHHHHHHHHHHHHcCCCH-HHCC----EEEEEEc
Confidence 456788889999999999876 2222 3566654
No 99
>cd00827 init_cond_enzymes "initiating" condensing enzymes are a subclass of decarboxylating condensing enzymes, including beta-ketoacyl [ACP] synthase, type III and polyketide synthases, type III, which include chalcone synthase and related enzymes. They are characterized by the utlization of CoA substrate primers, as well as the nature of their active site residues.
Probab=56.13 E-value=15 Score=25.56 Aligned_cols=20 Identities=30% Similarity=0.436 Sum_probs=17.6
Q ss_pred HHHHHHHHHHHHHHHcCCCC
Q psy5298 72 ATAFSLIATREALADAKWNP 91 (109)
Q Consensus 72 ~~~~al~a~~eAl~~agl~~ 91 (109)
...|+..|+++||+++|+++
T Consensus 48 ~~~l~~~a~~~aL~~ag~~~ 67 (324)
T cd00827 48 VPTMAVEAARRALERAGIDP 67 (324)
T ss_pred HHHHHHHHHHHHHHHcCCCH
Confidence 46789999999999999875
No 100
>PRK06633 acetyl-CoA acetyltransferase; Provisional
Probab=56.01 E-value=13 Score=27.31 Aligned_cols=31 Identities=19% Similarity=0.275 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHHHHHcCCCCCCCCCCCceEEEEeec
Q psy5298 72 ATAFSLIATREALADAKWNPQNEKQKERTGVAVGTG 107 (109)
Q Consensus 72 ~~~~al~a~~eAl~~agl~~~~~~~~~r~gv~iGt~ 107 (109)
...|+..++++||+++|+++ ++++ .+++|+.
T Consensus 27 ~~~L~~~a~~~al~~agi~~-~~Id----~vv~G~~ 57 (392)
T PRK06633 27 APMLAAHLIKDILQNSKIDP-ALVN----EVILGQV 57 (392)
T ss_pred HHHHHHHHHHHHHHHcCCCH-HHcC----EEEEEec
Confidence 45678889999999999986 3333 3666654
No 101
>PRK08963 fadI 3-ketoacyl-CoA thiolase; Reviewed
Probab=54.64 E-value=20 Score=26.60 Aligned_cols=31 Identities=19% Similarity=0.268 Sum_probs=22.5
Q ss_pred HHHHHHHHHHHHHHHcCCCCCCCCCCCceEEEEeec
Q psy5298 72 ATAFSLIATREALADAKWNPQNEKQKERTGVAVGTG 107 (109)
Q Consensus 72 ~~~~al~a~~eAl~~agl~~~~~~~~~r~gv~iGt~ 107 (109)
...|+..++++||+++|+++ +.++ .|++|+.
T Consensus 29 ~~eL~~~a~~~al~~agl~~-~~ID----~vi~G~~ 59 (428)
T PRK08963 29 AVDLGKMVVGELLARSEIDP-ELIE----QLVFGQV 59 (428)
T ss_pred HHHHHHHHHHHHHHHcCCCH-HHCC----EEEEecc
Confidence 36788899999999999986 3332 4666653
No 102
>PRK08242 acetyl-CoA acetyltransferase; Validated
Probab=53.45 E-value=15 Score=27.10 Aligned_cols=20 Identities=0% Similarity=-0.144 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHHHHHcCCCC
Q psy5298 72 ATAFSLIATREALADAKWNP 91 (109)
Q Consensus 72 ~~~~al~a~~eAl~~agl~~ 91 (109)
...|+..|+++||+++|+++
T Consensus 28 ~~dLa~~A~~~al~~agi~p 47 (402)
T PRK08242 28 PVRLAAGLLEALRDRNGLDT 47 (402)
T ss_pred HHHHHHHHHHHHHHHcCCCH
Confidence 45677888999999999986
No 103
>CHL00020 psbN photosystem II protein N
Probab=50.01 E-value=1.7 Score=21.66 Aligned_cols=19 Identities=21% Similarity=0.399 Sum_probs=14.8
Q ss_pred EEEEecceeCCCCCCHHHH
Q psy5298 4 VVVTGLGIVSPVGTTRQSA 22 (109)
Q Consensus 4 V~ItG~g~vs~lG~~~~~~ 22 (109)
|.|||+++.++.|....++
T Consensus 16 ~~~Tgy~iYtaFGppSk~L 34 (43)
T CHL00020 16 VSFTGYALYTAFGQPSKQL 34 (43)
T ss_pred HHhhheeeeeccCCchhcc
Confidence 4688999999999766554
No 104
>PRK06066 acetyl-CoA acetyltransferase; Provisional
Probab=49.53 E-value=23 Score=26.02 Aligned_cols=20 Identities=30% Similarity=0.298 Sum_probs=17.2
Q ss_pred HHHHHHHHHHHHHHHcC-CCC
Q psy5298 72 ATAFSLIATREALADAK-WNP 91 (109)
Q Consensus 72 ~~~~al~a~~eAl~~ag-l~~ 91 (109)
...|+..|+.+||+||| +++
T Consensus 25 ~~eL~~eA~~~Al~DAG~l~~ 45 (385)
T PRK06066 25 FREMMFEAASRAYKDAGNINP 45 (385)
T ss_pred HHHHHHHHHHHHHHhcCCCCC
Confidence 35788999999999999 874
No 105
>TIGR02446 FadI fatty oxidation complex, beta subunit FadI. This subunit of the FadJI complex has acetyl-CoA C-acyltransferase (EC 2.3.1.16) activity, and is also known as beta-ketothiolase and fatty oxidation complex, beta subunit, and YfcY. This protein is almost always located adjacent to FadJ (TIGR02440). The FadJI complex is needed for anaerobic beta-oxidation of short-chain fatty acids in E. coli.
Probab=48.99 E-value=29 Score=25.85 Aligned_cols=31 Identities=19% Similarity=0.276 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHHHHHcCCCCCCCCCCCceEEEEeec
Q psy5298 72 ATAFSLIATREALADAKWNPQNEKQKERTGVAVGTG 107 (109)
Q Consensus 72 ~~~~al~a~~eAl~~agl~~~~~~~~~r~gv~iGt~ 107 (109)
...|+..++++||+++|+++ ++++ .+++|+.
T Consensus 31 ~~~L~~~a~~~al~~agl~~-~~Id----~vi~G~~ 61 (430)
T TIGR02446 31 AVDLGKMVVSELLARSEIDP-KLIE----QLVFGQV 61 (430)
T ss_pred HHHHHHHHHHHHHHHcCCCH-HHCC----EEEEEec
Confidence 46788999999999999986 3333 3566643
No 106
>PRK07661 acetyl-CoA acetyltransferase; Provisional
Probab=48.88 E-value=36 Score=25.00 Aligned_cols=31 Identities=13% Similarity=0.213 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHHHHHcCCCCCCCCCCCceEEEEeec
Q psy5298 72 ATAFSLIATREALADAKWNPQNEKQKERTGVAVGTG 107 (109)
Q Consensus 72 ~~~~al~a~~eAl~~agl~~~~~~~~~r~gv~iGt~ 107 (109)
...|+..|+++||+++|+.+ ++++ .+++|+.
T Consensus 27 ~~eLa~~A~~~AL~~ag~~~-~dID----~vi~g~~ 57 (391)
T PRK07661 27 PDDLGALVVKETLKRAGNYE-GPID----DLIIGCA 57 (391)
T ss_pred HHHHHHHHHHHHHHhcCCCh-hHCC----EEEEEec
Confidence 36788899999999998753 3222 4666654
No 107
>PRK08142 acetyl-CoA acetyltransferase; Provisional
Probab=48.33 E-value=16 Score=26.81 Aligned_cols=20 Identities=25% Similarity=0.230 Sum_probs=17.4
Q ss_pred HHHHHHHHHHHHHHHcCCCC
Q psy5298 72 ATAFSLIATREALADAKWNP 91 (109)
Q Consensus 72 ~~~~al~a~~eAl~~agl~~ 91 (109)
...|+..|+++||+|||+.+
T Consensus 25 ~~~L~~eA~~~Al~DAgl~~ 44 (388)
T PRK08142 25 VAQLHAEVAKGALADAGLSL 44 (388)
T ss_pred HHHHHHHHHHHHHHHcCCCH
Confidence 36788999999999999975
No 108
>PLN02192 3-ketoacyl-CoA synthase
Probab=47.99 E-value=23 Score=27.14 Aligned_cols=21 Identities=24% Similarity=0.238 Sum_probs=18.2
Q ss_pred HHHHHHHHHHHHHHHHcCCCC
Q psy5298 71 RATAFSLIATREALADAKWNP 91 (109)
Q Consensus 71 ~~~~~al~a~~eAl~~agl~~ 91 (109)
-...++..|+++||+++|+++
T Consensus 175 Ea~~~~~~Aa~~aL~kaGi~p 195 (511)
T PLN02192 175 EAETVMFGAIDQLLAKTSVKP 195 (511)
T ss_pred HHHHHHHHHHHHHHHHcCCCH
Confidence 366788899999999999986
No 109
>PRK13183 psbN photosystem II reaction center protein N; Provisional
Probab=47.83 E-value=1.6 Score=22.11 Aligned_cols=19 Identities=26% Similarity=0.585 Sum_probs=14.5
Q ss_pred EEEEecceeCCCCCCHHHH
Q psy5298 4 VVVTGLGIVSPVGTTRQSA 22 (109)
Q Consensus 4 V~ItG~g~vs~lG~~~~~~ 22 (109)
|.|||+++.++.|...+++
T Consensus 19 ~~~TgyaiYtaFGppSk~L 37 (46)
T PRK13183 19 LALTGFGIYTAFGPPSKEL 37 (46)
T ss_pred HHHhhheeeeccCCccccc
Confidence 4688999999998766554
No 110
>PRK07855 lipid-transfer protein; Provisional
Probab=47.68 E-value=16 Score=26.66 Aligned_cols=20 Identities=30% Similarity=0.267 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHHHHHcCCCC
Q psy5298 72 ATAFSLIATREALADAKWNP 91 (109)
Q Consensus 72 ~~~~al~a~~eAl~~agl~~ 91 (109)
...|+..|+++||+|||+++
T Consensus 24 ~~~L~~eA~~~Al~DAgl~~ 43 (386)
T PRK07855 24 ELRLACEAVLAALDDAGLAP 43 (386)
T ss_pred HHHHHHHHHHHHHHHcCCCH
Confidence 35788999999999999874
No 111
>PRK07850 acetyl-CoA acetyltransferase; Provisional
Probab=47.33 E-value=30 Score=25.32 Aligned_cols=29 Identities=21% Similarity=0.236 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHHHHcCCCCCCCCCCCceEEEEee
Q psy5298 73 TAFSLIATREALADAKWNPQNEKQKERTGVAVGT 106 (109)
Q Consensus 73 ~~~al~a~~eAl~~agl~~~~~~~~~r~gv~iGt 106 (109)
..|+..++++||+++|+++ ++++ .+++|+
T Consensus 27 ~eL~~~a~~~aL~~agi~~-~~Id----~v~~G~ 55 (387)
T PRK07850 27 AELLGAVQRAVLDRAGIDP-GDVE----QVIGGC 55 (387)
T ss_pred HHHHHHHHHHHHHHcCCCH-HHCC----EEEEEe
Confidence 5778899999999999986 3333 356664
No 112
>PRK13196 pyrrolidone-carboxylate peptidase; Provisional
Probab=44.94 E-value=31 Score=23.17 Aligned_cols=29 Identities=14% Similarity=0.165 Sum_probs=18.5
Q ss_pred CCcEEEEecceeCCCCCCHHHHHHHHHcC
Q psy5298 1 MKRVVVTGLGIVSPVGTTRQSAWNAIKEG 29 (109)
Q Consensus 1 ~~~V~ItG~g~vs~lG~~~~~~~~~l~~g 29 (109)
|++|.|||++---..-.|+....-..+.+
T Consensus 1 m~~ILvTGF~PF~~~~~NPS~~~~~~L~~ 29 (211)
T PRK13196 1 MPTLLLTGFEPFHTHPVNPSAQAAQALNG 29 (211)
T ss_pred CCEEEEEeecCCCCCCCCcHHHHHHhccc
Confidence 89999999997765544543333333344
No 113
>PRK06365 acetyl-CoA acetyltransferase; Provisional
Probab=44.47 E-value=29 Score=25.81 Aligned_cols=20 Identities=20% Similarity=-0.085 Sum_probs=17.6
Q ss_pred HHHHHHHHHHHHHHHcCCCC
Q psy5298 72 ATAFSLIATREALADAKWNP 91 (109)
Q Consensus 72 ~~~~al~a~~eAl~~agl~~ 91 (109)
...|+..|+++||+|||+++
T Consensus 37 ~~eL~~eA~~~Al~dagl~~ 56 (430)
T PRK06365 37 FRERVKKAFDYAMNDAGLTL 56 (430)
T ss_pred HHHHHHHHHHHHHHHcCCCH
Confidence 36889999999999999975
No 114
>PRK13197 pyrrolidone-carboxylate peptidase; Provisional
Probab=44.36 E-value=33 Score=23.11 Aligned_cols=26 Identities=19% Similarity=0.234 Sum_probs=17.7
Q ss_pred CCcEEEEecceeCCCCCCH-HHHHHHH
Q psy5298 1 MKRVVVTGLGIVSPVGTTR-QSAWNAI 26 (109)
Q Consensus 1 ~~~V~ItG~g~vs~lG~~~-~~~~~~l 26 (109)
|++|.|||++---..-.|+ .++.+.|
T Consensus 1 m~~ILvTGF~PF~~~~~NPS~~~~~~L 27 (215)
T PRK13197 1 MMKILVTGFDPFGGEKINPSWEAVKQL 27 (215)
T ss_pred CCEEEEeeccCCCCCCCCcHHHHHHHc
Confidence 8899999999775554554 4444444
No 115
>TIGR01833 HMG-CoA-S_euk 3-hydroxy-3-methylglutaryl-CoA-synthase, eukaryotic clade. Hydroxymethylglutaryl(HMG)-CoA synthase is the first step of isopentenyl pyrophosphate (IPP) biosynthesis via the mevalonate pathway. This pathway is found mainly in eukaryotes, but also in archaea and some bacteria. This model is specific for eukaryotes.
Probab=43.97 E-value=24 Score=26.62 Aligned_cols=20 Identities=5% Similarity=0.079 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHHHHHcCCCC
Q psy5298 72 ATAFSLIATREALADAKWNP 91 (109)
Q Consensus 72 ~~~~al~a~~eAl~~agl~~ 91 (109)
..-|++.|++++|+++++++
T Consensus 50 ~~tma~~AA~~lL~~a~id~ 69 (454)
T TIGR01833 50 INSLCLTVVSKLMERYNIDY 69 (454)
T ss_pred HHHHHHHHHHHHHHHcCCCH
Confidence 56789999999999999875
No 116
>PF11248 DUF3046: Protein of unknown function (DUF3046); InterPro: IPR021408 This family of proteins with unknown function appears to be restricted to Actinobacteria.
Probab=40.93 E-value=13 Score=20.09 Aligned_cols=27 Identities=22% Similarity=0.427 Sum_probs=19.1
Q ss_pred EEEEecceeCCC-----CCCHHHHHHHHHcCC
Q psy5298 4 VVVTGLGIVSPV-----GTTRQSAWNAIKEGK 30 (109)
Q Consensus 4 V~ItG~g~vs~l-----G~~~~~~~~~l~~g~ 30 (109)
-|++++|..++. |.++.++|.+|++--
T Consensus 26 hvL~~LGgrT~~eAL~~G~dpr~VW~AlC~~~ 57 (63)
T PF11248_consen 26 HVLSELGGRTAAEALEAGVDPRDVWRALCDAF 57 (63)
T ss_pred cchhhcCCcCHHHHHHcCCCHHHHHHHHHHHc
Confidence 356666666554 778999999997653
No 117
>PF00108 Thiolase_N: Thiolase, N-terminal domain; InterPro: IPR020616 Two different types of thiolase [, , ] are found both in eukaryotes and in prokaryotes: acetoacetyl-CoA thiolase (2.3.1.9 from EC) and 3-ketoacyl-CoA thiolase (2.3.1.16 from EC). 3-ketoacyl-CoA thiolase (also called thiolase I) has a broad chain-length specificity for its substrates and is involved in degradative pathways such as fatty acid beta-oxidation. Acetoacetyl-CoA thiolase (also called thiolase II) is specific for the thiolysis of acetoacetyl-CoA and involved in biosynthetic pathways such as poly beta-hydroxybutyrate synthesis or steroid biogenesis. In eukaryotes, there are two forms of 3-ketoacyl-CoA thiolase: one located in the mitochondrion and the other in peroxisomes. There are two conserved cysteine residues important for thiolase activity. The first located in the N-terminal section of the enzymes is involved in the formation of an acyl-enzyme intermediate; the second located at the C-terminal extremity is the active site base involved in deprotonation in the condensation reaction. Mammalian nonspecific lipid-transfer protein (nsL-TP) (also known as sterol carrier protein 2) is a protein which seems to exist in two different forms: a 14 Kd protein (SCP-2) and a larger 58 Kd protein (SCP-x). The former is found in the cytoplasm or the mitochondria and is involved in lipid transport; the latter is found in peroxisomes. The C-terminal part of SCP-x is identical to SCP-2 while the N-terminal portion is evolutionary related to thiolases [].; GO: 0016747 transferase activity, transferring acyl groups other than amino-acyl groups, 0008152 metabolic process; PDB: 1PXT_B 1AFW_B 1WL4_A 1WL5_A 4E1L_B 1WDK_D 1WDM_D 2D3T_D 1WDL_C 2WUA_B ....
Probab=40.78 E-value=37 Score=23.41 Aligned_cols=32 Identities=25% Similarity=0.355 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHHHHHcCCCCCCCCCCCceEEEEeecC
Q psy5298 72 ATAFSLIATREALADAKWNPQNEKQKERTGVAVGTGM 108 (109)
Q Consensus 72 ~~~~al~a~~eAl~~agl~~~~~~~~~r~gv~iGt~~ 108 (109)
...|+..+++++|+++++++ + +-=.|++|+..
T Consensus 26 ~~~L~~~a~~~al~~~~i~~-~----~Id~v~~G~~~ 57 (264)
T PF00108_consen 26 PEDLAAEAVKAALERAGIDP-E----DIDAVIVGNVL 57 (264)
T ss_dssp HHHHHHHHHHHHHHHHTSHG-G----GEEEEEEE-SS
T ss_pred HHHHHHHHHHHHHHhcccch-h----hhhhcCccccc
Confidence 45788889999999999876 2 22246777643
No 118
>COG3424 BcsA Predicted naringenin-chalcone synthase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=36.49 E-value=49 Score=24.02 Aligned_cols=36 Identities=22% Similarity=0.243 Sum_probs=24.5
Q ss_pred CCHHHHHHHHHHHHHHHHcCCCCCCCCCCCceEEEEeecCC
Q psy5298 69 MSRATAFSLIATREALADAKWNPQNEKQKERTGVAVGTGMI 109 (109)
Q Consensus 69 ~~~~~~~al~a~~eAl~~agl~~~~~~~~~r~gv~iGt~~~ 109 (109)
+.....+.+.+.++||+.+++.+ + +-..|++-|++|
T Consensus 73 ie~a~~l~v~a~r~aL~~~~l~p-e----dId~vv~vtsTG 108 (356)
T COG3424 73 IEEAVPLGVDALRRALDGSPLRP-E----DIDAVVTVTSTG 108 (356)
T ss_pred HHHHHHHHHHHHHHHhccCCCCH-H----HCcEEEEEeecc
Confidence 34466788999999999999886 2 222345555543
No 119
>PRK06504 acetyl-CoA acetyltransferase; Provisional
Probab=36.18 E-value=58 Score=23.92 Aligned_cols=19 Identities=5% Similarity=0.090 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHHHHcCCCC
Q psy5298 73 TAFSLIATREALADAKWNP 91 (109)
Q Consensus 73 ~~~al~a~~eAl~~agl~~ 91 (109)
..|+..++++||+++|+++
T Consensus 27 ~~L~~~a~~~al~~a~l~~ 45 (390)
T PRK06504 27 ADLAAQVLDALVDRSGADP 45 (390)
T ss_pred HHHHHHHHHHHHHHcCCCH
Confidence 6778889999999999886
No 120
>PRK08118 topology modulation protein; Reviewed
Probab=34.55 E-value=56 Score=20.79 Aligned_cols=24 Identities=25% Similarity=0.551 Sum_probs=17.8
Q ss_pred CCcEEEEecceeCCCCCCHHHHHHHHHcC
Q psy5298 1 MKRVVVTGLGIVSPVGTTRQSAWNAIKEG 29 (109)
Q Consensus 1 ~~~V~ItG~g~vs~lG~~~~~~~~~l~~g 29 (109)
|++|.|+|.+ |.++..+-+.|.+.
T Consensus 1 m~rI~I~G~~-----GsGKSTlak~L~~~ 24 (167)
T PRK08118 1 MKKIILIGSG-----GSGKSTLARQLGEK 24 (167)
T ss_pred CcEEEEECCC-----CCCHHHHHHHHHHH
Confidence 7899999854 55777777777654
No 121
>TIGR02863 spore_sspJ small, acid-soluble spore protein, SspJ family. RL J Bacteriol. 1998 Dec;180(24):6704-12.
Probab=34.02 E-value=24 Score=17.51 Aligned_cols=11 Identities=45% Similarity=0.371 Sum_probs=7.8
Q ss_pred HHHHHHHHcCC
Q psy5298 79 ATREALADAKW 89 (109)
Q Consensus 79 a~~eAl~~agl 89 (109)
+++.||+|||-
T Consensus 19 ~v~gaLEdAg~ 29 (47)
T TIGR02863 19 AIQGALEDAGQ 29 (47)
T ss_pred HHHHHHHHHHH
Confidence 55778888773
No 122
>PHA03297 envelope glycoprotein L; Provisional
Probab=33.69 E-value=68 Score=20.65 Aligned_cols=32 Identities=19% Similarity=0.227 Sum_probs=24.6
Q ss_pred HHHHHHHHHHHHHcCCCCCCCCCCCceEEEEe
Q psy5298 74 AFSLIATREALADAKWNPQNEKQKERTGVAVG 105 (109)
Q Consensus 74 ~~al~a~~eAl~~agl~~~~~~~~~r~gv~iG 105 (109)
-..+.+...++.+....+....+....|++.|
T Consensus 122 ~~LldaLd~al~~~q~spD~st~pP~lGCv~G 153 (185)
T PHA03297 122 EKLLFALDDSLSQSQSSPDEILGPPPLGCFTG 153 (185)
T ss_pred HHHHHHHHHHHhhcccCCccccCCCCCCceec
Confidence 35577888999977776656667888999887
No 123
>TIGR01226 phe_am_lyase phenylalanine ammonia-lyase. Members of this family are found, so far, in plants and fungi. From phenylalanine, this enzyme yields cinnaminic acid, a precursor of many important plant compounds. This protein shows extensive homology to histidine ammonia-lyase, the first enzyme of a histidine degradation pathway.
Probab=32.63 E-value=22 Score=28.26 Aligned_cols=30 Identities=27% Similarity=0.219 Sum_probs=24.5
Q ss_pred HHHHHHHHcCCCC-CCCCCCCceEEEEeecC
Q psy5298 79 ATREALADAKWNP-QNEKQKERTGVAVGTGM 108 (109)
Q Consensus 79 a~~eAl~~agl~~-~~~~~~~r~gv~iGt~~ 108 (109)
.+.|||+.+|+.| .....++-.+++-||+.
T Consensus 209 ~a~eAL~~aGl~p~~~L~pKEGLALvNGTa~ 239 (680)
T TIGR01226 209 SAAEALKLAGIEGGFELQPKEGLAIVNGTAV 239 (680)
T ss_pred eHHHHHHHcCCCCCCCCCCccchhhhcchHH
Confidence 4689999999998 66667888888888764
No 124
>TIGR03832 Tyr_2_3_mutase tyrosine 2,3-aminomutase. Members of this protein family are tyrosine 2,3-aminomutase. It is variable from member to member as to whether the (R)-beta-Tyr or (S)-beta-Tyr is the preferred product from L-Tyr. This enzyme tends to occur in secondary metabolite biosynthesis systems, as in the production of chondramides in Chondromyces crocatus.
Probab=32.31 E-value=20 Score=27.45 Aligned_cols=30 Identities=23% Similarity=0.268 Sum_probs=24.1
Q ss_pred HHHHHHHHcCCCCCCCCCCCceEEEEeecC
Q psy5298 79 ATREALADAKWNPQNEKQKERTGVAVGTGM 108 (109)
Q Consensus 79 a~~eAl~~agl~~~~~~~~~r~gv~iGt~~ 108 (109)
.+.|||+.+||.|.....++-.+++-||+.
T Consensus 166 ~a~eaL~~~gl~Pl~L~~KEgLALiNGt~~ 195 (507)
T TIGR03832 166 ETAQVLRERGIEPLELRFKEGLALINGTSA 195 (507)
T ss_pred cHHHHHHHcCCCCcCCCCcchhhhhcchHH
Confidence 567999999999876666788888888764
No 125
>PLN02457 phenylalanine ammonia-lyase
Probab=32.12 E-value=27 Score=27.98 Aligned_cols=30 Identities=23% Similarity=0.176 Sum_probs=24.4
Q ss_pred HHHHHHHHcCCCC--CCCCCCCceEEEEeecC
Q psy5298 79 ATREALADAKWNP--QNEKQKERTGVAVGTGM 108 (109)
Q Consensus 79 a~~eAl~~agl~~--~~~~~~~r~gv~iGt~~ 108 (109)
.+.|||+.+|+.| ..-..++-.+++-||+.
T Consensus 223 ~a~eAL~~aGl~Pp~~~L~~KEGLALiNGTa~ 254 (706)
T PLN02457 223 TAAEAFKLAGIEGGFFELQPKEGLALVNGTAV 254 (706)
T ss_pred cHHHHHHHcCCCCCCcCCCCCcchhcccccHH
Confidence 4689999999996 66667888899988864
No 126
>PF08747 DUF1788: Domain of unknown function (DUF1788); InterPro: IPR014858 This entry represents a putative uncharacterised protein of length around 200 amino acids.
Probab=31.56 E-value=26 Score=21.58 Aligned_cols=24 Identities=25% Similarity=0.412 Sum_probs=19.0
Q ss_pred EEEEecceeCCCCCCHHHHHHHHHc
Q psy5298 4 VVVTGLGIVSPVGTTRQSAWNAIKE 28 (109)
Q Consensus 4 V~ItG~g~vs~lG~~~~~~~~~l~~ 28 (109)
|.|||+|.+.|+= -..++.++|..
T Consensus 65 v~ltGvG~l~P~~-R~h~lL~~l~~ 88 (126)
T PF08747_consen 65 VFLTGVGSLFPFI-RSHELLNNLQP 88 (126)
T ss_pred EEEeCcchhcchh-hHHHHHHHHHH
Confidence 6899999999998 45566777754
No 127
>KOG1406|consensus
Probab=30.99 E-value=28 Score=24.74 Aligned_cols=33 Identities=30% Similarity=0.321 Sum_probs=24.4
Q ss_pred HHHHHHHHHHHHHcCCCCCCCCCCCceEEEEeec
Q psy5298 74 AFSLIATREALADAKWNPQNEKQKERTGVAVGTG 107 (109)
Q Consensus 74 ~~al~a~~eAl~~agl~~~~~~~~~r~gv~iGt~ 107 (109)
-++..|...||+|+++.- ...+..-+|-++|-+
T Consensus 31 d~a~ea~tkal~da~iky-s~vqqa~vgyvfgds 63 (408)
T KOG1406|consen 31 DFAKEAITKALQDAGIKY-SEVQQAVVGYVFGDS 63 (408)
T ss_pred hHHHHHHHHHHHhcCCCH-HHHHhhhheeeecCC
Confidence 356678899999999873 455667778888754
No 128
>PF02468 PsbN: Photosystem II reaction centre N protein (psbN); InterPro: IPR003398 Oxygenic photosynthesis uses two multi-subunit photosystems (I and II) located in the cell membranes of cyanobacteria and in the thylakoid membranes of chloroplasts in plants and algae. Photosystem II (PSII) has a P680 reaction centre containing chlorophyll 'a' that uses light energy to carry out the oxidation (splitting) of water molecules, and to produce ATP via a proton pump. Photosystem I (PSI) has a P700 reaction centre containing chlorophyll that takes the electron and associated hydrogen donated from PSII to reduce NADP+ to NADPH. Both ATP and NADPH are subsequently used in the light-independent reactions to convert carbon dioxide to glucose using the hydrogen atom extracted from water by PSII, releasing oxygen as a by-product. PSII is a multisubunit protein-pigment complex containing polypeptides both intrinsic and extrinsic to the photosynthetic membrane [, ]. Within the core of the complex, the chlorophyll and beta-carotene pigments are mainly bound to the antenna proteins CP43 (PsbC) and CP47 (PsbB), which pass the excitation energy on to the reaction centre proteins D1 (Qb, PsbA) and D2 (Qa, PsbD) that bind all the redox-active cofactors involved in the energy conversion process. The PSII oxygen-evolving complex (OEC) oxidises water to provide protons for use by PSI, and consists of OEE1 (PsbO), OEE2 (PsbP) and OEE3 (PsbQ). The remaining subunits in PSII are of low molecular weight (less than 10 kDa), and are involved in PSII assembly, stabilisation, dimerisation, and photo-protection []. This family represents the low molecular weight transmembrane protein PsbN found in PSII. PsbN may have a role in PSII stability, however its actual function unknown. PsbN does not appear to be essential for photoautotrophic growth or normal PSII function.; GO: 0015979 photosynthesis, 0009523 photosystem II, 0009539 photosystem II reaction center, 0016020 membrane
Probab=30.27 E-value=1.7 Score=21.69 Aligned_cols=18 Identities=28% Similarity=0.523 Sum_probs=12.2
Q ss_pred EEEEecceeCCCCCCHHH
Q psy5298 4 VVVTGLGIVSPVGTTRQS 21 (109)
Q Consensus 4 V~ItG~g~vs~lG~~~~~ 21 (109)
|.|||+++.++.|...++
T Consensus 16 v~~Tgy~iYtaFGppSk~ 33 (43)
T PF02468_consen 16 VSITGYAIYTAFGPPSKE 33 (43)
T ss_pred HHHHhhhhhheeCCCccc
Confidence 346788888888765544
No 129
>PF09314 DUF1972: Domain of unknown function (DUF1972); InterPro: IPR015393 This domain is functionally uncharacterised and found in bacterial glycosyltransferases and rhamnosyltransferases.
Probab=29.93 E-value=86 Score=20.68 Aligned_cols=30 Identities=10% Similarity=0.070 Sum_probs=23.7
Q ss_pred CCcEEEEecceeCCCCCCHHHHHHHHHcCC
Q psy5298 1 MKRVVVTGLGIVSPVGTTRQSAWNAIKEGK 30 (109)
Q Consensus 1 ~~~V~ItG~g~vs~lG~~~~~~~~~l~~g~ 30 (109)
|++|+|.|.=.+-+-=-+.|.+.+.|....
T Consensus 1 mkkIaIiGtrGIPa~YGGfET~ve~L~~~l 30 (185)
T PF09314_consen 1 MKKIAIIGTRGIPARYGGFETFVEELAPRL 30 (185)
T ss_pred CceEEEEeCCCCCcccCcHHHHHHHHHHHH
Confidence 899999999888554447888888887654
No 130
>COG4032 Predicted thiamine-pyrophosphate-binding protein [General function prediction only]
Probab=29.48 E-value=46 Score=21.32 Aligned_cols=13 Identities=38% Similarity=0.327 Sum_probs=11.2
Q ss_pred HHHHHHHHHcCCC
Q psy5298 78 IATREALADAKWN 90 (109)
Q Consensus 78 ~a~~eAl~~agl~ 90 (109)
.|+.++++|+|++
T Consensus 8 eav~e~mkdagId 20 (172)
T COG4032 8 EAVYEAMKDAGID 20 (172)
T ss_pred HHHHHHHHHcCCc
Confidence 5779999999985
No 131
>PLN00415 3-ketoacyl-CoA synthase
Probab=29.45 E-value=70 Score=24.37 Aligned_cols=20 Identities=10% Similarity=0.252 Sum_probs=14.3
Q ss_pred HHHHHHH-HHHHHHHHcCCCC
Q psy5298 72 ATAFSLI-ATREALADAKWNP 91 (109)
Q Consensus 72 ~~~~al~-a~~eAl~~agl~~ 91 (109)
...+++. |+++||+++|+++
T Consensus 133 e~em~i~~A~~~aL~~aGi~p 153 (466)
T PLN00415 133 ESELVIFGALNSLFKKTGIEP 153 (466)
T ss_pred HHHHHHHHHHHHHHHHcCCCH
Confidence 3344444 7778899999986
No 132
>PF02495 7kD_coat: 7kD viral coat protein; InterPro: IPR003411 This family consists of a 7 kDa coat protein from Carlavirus and Potexvirus [].
Probab=28.70 E-value=61 Score=16.98 Aligned_cols=23 Identities=22% Similarity=0.196 Sum_probs=17.6
Q ss_pred EEEEecceeCCCCCCHHHHHHHH
Q psy5298 4 VVVTGLGIVSPVGTTRQSAWNAI 26 (109)
Q Consensus 4 V~ItG~g~vs~lG~~~~~~~~~l 26 (109)
|+|||-++.--.....+++.+.+
T Consensus 29 I~ItGeSv~I~gC~~~~e~i~~i 51 (59)
T PF02495_consen 29 IVITGESVTISGCEFTPEFIEAI 51 (59)
T ss_pred EEEeCcEEEEECCCCCHHHHHHH
Confidence 78888888766666777777776
No 133
>cd04444 DEP_PLEK2 DEP (Dishevelled, Egl-10, and Pleckstrin) domain found in pleckstrin 2-like proteins. Pleckstrin 2 is found in a wide variety of cell types, which suggest a more general role in signaling than pleckstrin 1. Pleckstrin-like proteins contain a central DEP domain, flanked by 2 PH (pleckstrin homology) domains.
Probab=28.61 E-value=69 Score=19.36 Aligned_cols=22 Identities=0% Similarity=0.036 Sum_probs=18.6
Q ss_pred CHHHHHHHHHcCCCceeeCCCC
Q psy5298 18 TRQSAWNAIKEGKACVSPLSEP 39 (109)
Q Consensus 18 ~~~~~~~~l~~g~s~i~~~~~~ 39 (109)
|..++|..|+++..||+-..+.
T Consensus 1 ~L~~L~~~mq~~~~Gik~~~~r 22 (109)
T cd04444 1 SLHRIVDKMHDSSTGIRHSPNM 22 (109)
T ss_pred CHHHHHHHHhCCCcCcchhhhh
Confidence 5678999999999999977653
No 134
>PRK13195 pyrrolidone-carboxylate peptidase; Provisional
Probab=28.46 E-value=79 Score=21.53 Aligned_cols=19 Identities=32% Similarity=0.462 Sum_probs=13.3
Q ss_pred CCcEEEEecceeCCCCCCH
Q psy5298 1 MKRVVVTGLGIVSPVGTTR 19 (109)
Q Consensus 1 ~~~V~ItG~g~vs~lG~~~ 19 (109)
|++|.|||++---..-.|+
T Consensus 1 m~~ILvTGF~PFgg~~~NP 19 (222)
T PRK13195 1 MSKVLVTGFGPYGVTPVNP 19 (222)
T ss_pred CCEEEEeeecCCCCCCcCc
Confidence 7889999999653333454
No 135
>PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways. Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process
Probab=28.24 E-value=1.1e+02 Score=19.27 Aligned_cols=30 Identities=23% Similarity=0.439 Sum_probs=23.9
Q ss_pred CCcEEEEecceeCCCCCCHHHHHHHHHcCCCceee
Q psy5298 1 MKRVVVTGLGIVSPVGTTRQSAWNAIKEGKACVSP 35 (109)
Q Consensus 1 ~~~V~ItG~g~vs~lG~~~~~~~~~l~~g~s~i~~ 35 (109)
|+||.+.| +.|.++..+.++|.....-..+
T Consensus 1 MkrimliG-----~~g~GKTTL~q~L~~~~~~~~K 30 (143)
T PF10662_consen 1 MKRIMLIG-----PSGSGKTTLAQALNGEEIRYKK 30 (143)
T ss_pred CceEEEEC-----CCCCCHHHHHHHHcCCCCCcCc
Confidence 88898888 6788999999999887654443
No 136
>COG2986 HutH Histidine ammonia-lyase [Amino acid transport and metabolism]
Probab=28.14 E-value=43 Score=25.61 Aligned_cols=30 Identities=33% Similarity=0.359 Sum_probs=24.3
Q ss_pred HHHHHHHHcCCCCCCCCCCCceEEEEeecC
Q psy5298 79 ATREALADAKWNPQNEKQKERTGVAVGTGM 108 (109)
Q Consensus 79 a~~eAl~~agl~~~~~~~~~r~gv~iGt~~ 108 (109)
.+.+||+.+|+.|.....++-.+++-||..
T Consensus 171 ~a~~AL~~aglePi~L~aKEGLALiNGTq~ 200 (498)
T COG2986 171 SAAEALAKAGLEPVTLAAKEGLALINGTQV 200 (498)
T ss_pred cHHHHHHHcCCCCcccccccceeeccccHH
Confidence 467999999999976667788888888753
No 137
>cd00332 PAL-HAL Phenylalanine ammonia-lyase (PAL) and histidine ammonia-lyase (HAL). PAL and HAL are members of the Lyase class I_like superfamily of enzymes that, catalyze similar beta-elimination reactions and are active as homotetramers. The four active sites of the homotetrameric enzyme are each formed by residues from three different subunits. PAL, present in plants and fungi, catalyzes the conversion of L-phenylalanine to E-cinnamic acid. HAL, found in several bacteria and animals, catalyzes the conversion of L-histidine to E-urocanic acid. Both PAL and HAL contain the cofactor 3, 5-dihydro-5-methylidene-4H-imidazol-4-one (MIO) which is formed by autocatalytic excision/cyclization of the internal tripeptide, Ala-Ser-Gly. PAL is being explored as enzyme substitution therapy for Phenylketonuria (PKU), a disorder which involves an inability to metabolize phenylalanine. HAL failure in humans results in the disease histidinemia.
Probab=28.11 E-value=23 Score=26.66 Aligned_cols=30 Identities=33% Similarity=0.354 Sum_probs=23.3
Q ss_pred HHHHHHHHcCCCCCCCCCCCceEEEEeecC
Q psy5298 79 ATREALADAKWNPQNEKQKERTGVAVGTGM 108 (109)
Q Consensus 79 a~~eAl~~agl~~~~~~~~~r~gv~iGt~~ 108 (109)
-+.|||+.+|+.|.....++-.+++-||+.
T Consensus 163 ~a~eal~~~gl~p~~l~~KegLALingta~ 192 (444)
T cd00332 163 PAAEALARAGLEPLELGAKEGLALINGTAV 192 (444)
T ss_pred eHHHHHHHcCCCCCCCCCcchhhhhhccHH
Confidence 468999999999866556777788877753
No 138
>TIGR02430 pcaF beta-ketoadipyl CoA thiolase. Members of this family are designated beta-ketoadipyl CoA thiolase, an enzyme that acts at the end of pathways for the degradation of protocatechuate (from benzoate and related compounds) and of phenylacetic acid.
Probab=27.12 E-value=80 Score=23.32 Aligned_cols=31 Identities=16% Similarity=0.237 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHHHH-HcCCCCCCCCCCCceEEEEeec
Q psy5298 72 ATAFSLIATREALA-DAKWNPQNEKQKERTGVAVGTG 107 (109)
Q Consensus 72 ~~~~al~a~~eAl~-~agl~~~~~~~~~r~gv~iGt~ 107 (109)
...|+..++++||+ ++|+++ ++++ .+++|+.
T Consensus 25 ~~~L~~~a~~~al~~~a~i~~-~~Id----~v~~G~~ 56 (400)
T TIGR02430 25 ADDLAAVPIKALLARNPQLDW-AAID----DVIYGCA 56 (400)
T ss_pred HHHHHHHHHHHHHHhccCCCH-HHCC----EEEEEec
Confidence 35778889999999 679875 3333 3566643
No 139
>PF03658 Ub-RnfH: RnfH family Ubiquitin; InterPro: IPR005346 This is a small family of proteins of unknown function.; PDB: 2HJ1_B.
Probab=26.62 E-value=49 Score=18.96 Aligned_cols=25 Identities=16% Similarity=0.332 Sum_probs=15.0
Q ss_pred HHHHHHHHcCCC---CCCCCCCCceEEE
Q psy5298 79 ATREALADAKWN---PQNEKQKERTGVA 103 (109)
Q Consensus 79 a~~eAl~~agl~---~~~~~~~~r~gv~ 103 (109)
.+.|||+.+||. |.-++...++|++
T Consensus 25 Tv~~Ai~~Sgi~~~~p~idl~~~~vGIf 52 (84)
T PF03658_consen 25 TVAQAIEASGILEQFPEIDLEKNKVGIF 52 (84)
T ss_dssp BHHHHHHHHTHHHH-TT--TTTSEEEEE
T ss_pred cHHHHHHHcCchhhCcccCcccceeeee
Confidence 358899999974 1112345667764
No 140
>PRK09367 histidine ammonia-lyase; Provisional
Probab=26.15 E-value=24 Score=26.97 Aligned_cols=30 Identities=33% Similarity=0.325 Sum_probs=23.0
Q ss_pred HHHHHHHHcCCCCCCCCCCCceEEEEeecC
Q psy5298 79 ATREALADAKWNPQNEKQKERTGVAVGTGM 108 (109)
Q Consensus 79 a~~eAl~~agl~~~~~~~~~r~gv~iGt~~ 108 (109)
.+.|||+.+|+.|.....++-.+++-||+.
T Consensus 171 ~a~eal~~~gl~p~~l~~KegLALinGt~~ 200 (500)
T PRK09367 171 PAAEALAKAGLEPVTLAAKEGLALINGTQA 200 (500)
T ss_pred cHHHHHHHcCCCCcCCCCcchhHHhccHHH
Confidence 467999999999865556777788877754
No 141
>PLN02854 3-ketoacyl-CoA synthase
Probab=26.13 E-value=86 Score=24.27 Aligned_cols=31 Identities=16% Similarity=0.177 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHHHHHHcCCCCCCCCCCCceEEEEeec
Q psy5298 71 RATAFSLIATREALADAKWNPQNEKQKERTGVAVGTG 107 (109)
Q Consensus 71 ~~~~~al~a~~eAl~~agl~~~~~~~~~r~gv~iGt~ 107 (109)
-.......|+.++|+++|+++ +.++++|-++
T Consensus 187 ea~~v~~~~~~~lL~kaGi~p------~dID~LIv~c 217 (521)
T PLN02854 187 EAEAVMFGALDSLFSKTGVKP------RDIGILIVNC 217 (521)
T ss_pred HHHHHHHHHHHHHHHHcCCCH------HHCCEEEEEC
Confidence 355667788999999999986 4555555433
No 142
>PF06406 StbA: StbA protein; InterPro: IPR009440 This entry represents bacterial plasmid segregation proteins ParM and StbA []. They are involved in the control of plasmid partition and required for the accurate segregation of the plasmid. ; PDB: 3IKY_C 3IKU_I 2ZGZ_B 1MWM_A 1MWK_A 2ZHC_A 2ZGY_A 2QU4_A.
Probab=25.80 E-value=1.1e+02 Score=21.76 Aligned_cols=27 Identities=30% Similarity=0.529 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHHHHcCCCCCCCCCCCceEEEEe
Q psy5298 73 TAFSLIATREALADAKWNPQNEKQKERTGVAVG 105 (109)
Q Consensus 73 ~~~al~a~~eAl~~agl~~~~~~~~~r~gv~iG 105 (109)
..+.+.+++.||..+|+.+ .++-+++|
T Consensus 75 s~~n~~av~haL~~~G~~~------~~V~lvvG 101 (318)
T PF06406_consen 75 SDLNLVAVHHALLKAGLEP------QDVDLVVG 101 (318)
T ss_dssp SHHHHHHHHHHHHHHS--S------SEEEEEEE
T ss_pred chhhHHHHHHHHHHcCCCC------CCeEEEec
Confidence 3455667899999999874 46666666
No 143
>PRK09050 beta-ketoadipyl CoA thiolase; Validated
Probab=25.55 E-value=95 Score=22.93 Aligned_cols=31 Identities=13% Similarity=0.178 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHHHH-HcCCCCCCCCCCCceEEEEeec
Q psy5298 72 ATAFSLIATREALA-DAKWNPQNEKQKERTGVAVGTG 107 (109)
Q Consensus 72 ~~~~al~a~~eAl~-~agl~~~~~~~~~r~gv~iGt~ 107 (109)
...|+..++++||+ ++|+++ ++.+ .+++|+.
T Consensus 26 ~~~L~~~a~~~al~~~agi~~-~~Id----~v~~G~~ 57 (401)
T PRK09050 26 ADDLGAVPLKALMARNPGVDW-EAVD----DVIYGCA 57 (401)
T ss_pred HHHHHHHHHHHHHHhccCCCH-HHCC----EEEEEec
Confidence 35677888999998 589875 3332 2566643
No 144
>COG2732 Barstar, RNAse (barnase) inhibitor [Transcription]
Probab=25.06 E-value=55 Score=19.00 Aligned_cols=16 Identities=13% Similarity=0.447 Sum_probs=12.7
Q ss_pred CCCCHHHHHHHHHcCC
Q psy5298 15 VGTTRQSAWNAIKEGK 30 (109)
Q Consensus 15 lG~~~~~~~~~l~~g~ 30 (109)
.|+|.+++|+.|....
T Consensus 31 yg~nLDaLWD~ltg~v 46 (91)
T COG2732 31 YGRNLDALWDVLTGDV 46 (91)
T ss_pred hcccHHHHHHHHhccc
Confidence 4899999999985443
No 145
>PRK09268 acetyl-CoA acetyltransferase; Provisional
Probab=24.38 E-value=71 Score=23.82 Aligned_cols=30 Identities=10% Similarity=0.003 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHHHHHcCCCCCCCCCCCceEEEEee
Q psy5298 72 ATAFSLIATREALADAKWNPQNEKQKERTGVAVGT 106 (109)
Q Consensus 72 ~~~~al~a~~eAl~~agl~~~~~~~~~r~gv~iGt 106 (109)
...|+..++++||+++|+++ ++++ .+++|+
T Consensus 31 ~~eL~~~a~~~al~~agl~~-~~Id----~vv~G~ 60 (427)
T PRK09268 31 NQDMLTAALDGLVDRFGLQG-ERLG----EVVAGA 60 (427)
T ss_pred HHHHHHHHHHHHHHHcCCCH-HHCC----EEEEEe
Confidence 46788899999999999875 3333 356664
No 146
>cd05143 Barstar_SaI14_like Barstar_SaI14_like contains sequences that are similar to SaI14, an RNAase inhibitor, which are members of the Barstar family. Barstar is an intracellular inhibitor of barnase, an extracellular ribonuclease of Bacillus amyloliquefaciens. Barstar binds tightly to the barnase active site and sterically blocks it thus inhibiting its potentially lethal RNase activity inside the cell. The sequences in this subfamily are mostly uncharacterized, but believed to have a similar function and role.
Probab=24.37 E-value=65 Score=18.59 Aligned_cols=16 Identities=13% Similarity=0.297 Sum_probs=13.5
Q ss_pred CCCCHHHHHHHHHcCC
Q psy5298 15 VGTTRQSAWNAIKEGK 30 (109)
Q Consensus 15 lG~~~~~~~~~l~~g~ 30 (109)
.|.|.+++|+.|..|-
T Consensus 29 fG~NlDAL~D~Ltgg~ 44 (88)
T cd05143 29 FGPNLDALADCLRGGY 44 (88)
T ss_pred cCCCHHHHHHHhccCC
Confidence 5899999999997653
No 147
>PRK06217 hypothetical protein; Validated
Probab=23.56 E-value=92 Score=19.88 Aligned_cols=25 Identities=28% Similarity=0.377 Sum_probs=18.6
Q ss_pred CCcEEEEecceeCCCCCCHHHHHHHHHcCC
Q psy5298 1 MKRVVVTGLGIVSPVGTTRQSAWNAIKEGK 30 (109)
Q Consensus 1 ~~~V~ItG~g~vs~lG~~~~~~~~~l~~g~ 30 (109)
|.+|+|+|.. |.++..+.+.|.+.-
T Consensus 1 ~~~I~i~G~~-----GsGKSTla~~L~~~l 25 (183)
T PRK06217 1 MMRIHITGAS-----GSGTTTLGAALAERL 25 (183)
T ss_pred CeEEEEECCC-----CCCHHHHHHHHHHHc
Confidence 7889999854 568888888777643
No 148
>COG0504 PyrG CTP synthase (UTP-ammonia lyase) [Nucleotide transport and metabolism]
Probab=22.91 E-value=89 Score=24.16 Aligned_cols=28 Identities=29% Similarity=0.525 Sum_probs=19.3
Q ss_pred CcEEEEecceeCCCCCCH-HHHHHHHHcCC
Q psy5298 2 KRVVVTGLGIVSPVGTTR-QSAWNAIKEGK 30 (109)
Q Consensus 2 ~~V~ItG~g~vs~lG~~~-~~~~~~l~~g~ 30 (109)
+=|.||| |++|++|.+. .+....|+..+
T Consensus 2 KyIfVTG-GVvSslGKGi~aaSlg~lLk~r 30 (533)
T COG0504 2 KYIFVTG-GVVSSLGKGITAASLGRLLKAR 30 (533)
T ss_pred eEEEEeC-CeecccccHHHHHHHHHHHHHC
Confidence 3477887 9999999983 44455555544
No 149
>TIGR01225 hutH histidine ammonia-lyase. This enzyme deaminates histidine to urocanic acid, the first step in histidine degradation. It is closely related to phenylalanine ammonia-lyase.
Probab=22.16 E-value=30 Score=26.51 Aligned_cols=30 Identities=33% Similarity=0.316 Sum_probs=22.9
Q ss_pred HHHHHHHHcCCCCCCCCCCCceEEEEeecC
Q psy5298 79 ATREALADAKWNPQNEKQKERTGVAVGTGM 108 (109)
Q Consensus 79 a~~eAl~~agl~~~~~~~~~r~gv~iGt~~ 108 (109)
.+.|||+.+|+.|..-..++-.+++-||+.
T Consensus 168 ~a~eaL~~~gl~P~~l~~KEgLALiNGt~~ 197 (506)
T TIGR01225 168 PAAEALAAAGLEPVTLAAKEGLALINGTQA 197 (506)
T ss_pred cHHHHHHHcCCCCCCCCCcchhHHhhhhHH
Confidence 357999999999865556777777777753
No 150
>TIGR02445 fadA fatty oxidation complex, beta subunit FadA. This subunit of the FadBA complex has acetyl-CoA C-acyltransferase (EC 2.3.1.16) activity, and is also known as beta-ketothiolase and fatty oxidation complex, beta subunit. This protein is almost always located adjacent to FadB (TIGR02437). The FadBA complex is the major complex active for beta-oxidation of fatty acids in E. coli.
Probab=21.69 E-value=1.3e+02 Score=22.04 Aligned_cols=30 Identities=27% Similarity=0.284 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHHHHH-cCCCCCCCCCCCceEEEEee
Q psy5298 72 ATAFSLIATREALAD-AKWNPQNEKQKERTGVAVGT 106 (109)
Q Consensus 72 ~~~~al~a~~eAl~~-agl~~~~~~~~~r~gv~iGt 106 (109)
...|+..++++||++ +|+++ ++++ .+++|+
T Consensus 25 ~~~L~~~a~~~al~~~agl~~-~~Id----~v~~G~ 55 (385)
T TIGR02445 25 AEDLSAHLMSKLLARNPKVDP-AEVE----DIYWGC 55 (385)
T ss_pred HHHHHHHHHHHHHHhccCCCH-HHcC----EEEEec
Confidence 367888999999995 69876 3333 356664
No 151
>PF08392 FAE1_CUT1_RppA: FAE1/Type III polyketide synthase-like protein; InterPro: IPR013601 This domain is found in proteins that are described as 3-ketoacyl-CoA synthases, type III polyketide synthases, fatty acid elongases and fatty acid condensing enzymes, and are found in both prokaryotic and eukaryotic (mainly plant) species. The region contains the active site residues, as well as motifs involved in substrate binding []. ; GO: 0016747 transferase activity, transferring acyl groups other than amino-acyl groups, 0006633 fatty acid biosynthetic process, 0016020 membrane
Probab=20.65 E-value=1.5e+02 Score=21.12 Aligned_cols=22 Identities=23% Similarity=0.211 Sum_probs=18.3
Q ss_pred CHHHHHHHHHHHHHHHHcCCCC
Q psy5298 70 SRATAFSLIATREALADAKWNP 91 (109)
Q Consensus 70 ~~~~~~al~a~~eAl~~agl~~ 91 (109)
.-...++..+++++|+.+|+.|
T Consensus 81 ~Eae~v~f~av~~LL~ktgv~p 102 (290)
T PF08392_consen 81 EEAEMVIFGAVDDLLAKTGVKP 102 (290)
T ss_pred HHHHHHHHHHHHHHHHHcCCCH
Confidence 4466678889999999999986
No 152
>cd05142 Barstar Barstar is an intracellular inhibitor of barnase, an extracellular ribonuclease of Bacillus amyloliquefaciens. Barstar binds tightly to the barnase active site and sterically blocks it thus inhibiting its potentially lethal RNase activity inside the cell. Barstar also binds and inhibits a ribonuclease called RNase Sa (produced by Streptomyces aureofaciens) which belongs to the same enzyme family as does barnase.
Probab=20.56 E-value=85 Score=17.91 Aligned_cols=15 Identities=13% Similarity=0.434 Sum_probs=12.6
Q ss_pred CCCCHHHHHHHHHcC
Q psy5298 15 VGTTRQSAWNAIKEG 29 (109)
Q Consensus 15 lG~~~~~~~~~l~~g 29 (109)
.|.|.+++|+.|..+
T Consensus 29 ~G~NlDAl~D~Ltg~ 43 (87)
T cd05142 29 YGENLDALWDCLTGW 43 (87)
T ss_pred cCCCHHHHHHHHcCC
Confidence 489999999999754
No 153
>PF09550 DUF2376: Conserved hypothetical phage protein (DUF2376); InterPro: IPR019056 Gene transfer agents belong to a group of unusual genetic exchange elements []. GTAs are unusual in the sense they have the structure of a small tailed phage, which do not possess typical phage traits such as host cell lysis and infectious transmission of the GTA genes. In the Rhodobacter capsulatus GTA the GTA particles contain random 4.5 kb DNA fragments of the R.capsulatus genome. These DNA fragments can be transmitted to other cells where allelic conversion may occur via homologous recombination. The genes coding for the GTA particles are of two distinct types: the first is a cluster of genes reminiscent of a cryptyic prophage, where a number of the genes have similarity to known phage structural genes; the second type consists of two genes coding for a cellular two-component signal transduction system, which regulates the transcription of the GTA structural gene cluster in a growth phase dependent manner []. This entry is represented by ORFg10.1 (RCAP_rcc01693) of the Gene Transfer Agent (GTA) of Rhodobacter capsulatus [see Fig.1, in ]. The function is not known.
Probab=20.19 E-value=83 Score=15.61 Aligned_cols=9 Identities=22% Similarity=0.741 Sum_probs=4.7
Q ss_pred CCCHHHHHH
Q psy5298 16 GTTRQSAWN 24 (109)
Q Consensus 16 G~~~~~~~~ 24 (109)
|..+++||.
T Consensus 2 gl~P~~FW~ 10 (43)
T PF09550_consen 2 GLSPEEFWR 10 (43)
T ss_pred CCCHHHHHh
Confidence 445555554
No 154
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=20.02 E-value=3.2e+02 Score=19.09 Aligned_cols=82 Identities=13% Similarity=0.056 Sum_probs=43.5
Q ss_pred cceeCCCCCCHHHHHHHHHcC---CCceeeCCCCCcCCC-CcceeeecCC---CCcCCCCChHhhhcCCHHHHH------
Q psy5298 9 LGIVSPVGTTRQSAWNAIKEG---KACVSPLSEPEYSKL-PCKIAARIEG---LDLTAQFTQSKLRTMSRATAF------ 75 (109)
Q Consensus 9 ~g~vs~lG~~~~~~~~~l~~g---~s~i~~~~~~~~~~~-~~~~~~~i~~---~~~~~~~~~~~~~~~~~~~~~------ 75 (109)
.+++=|.|.++..+.+.++-= .+|--.+........ .....|.+|. +|....+.-++.-.|.++.+.
T Consensus 33 ~~iiGPNGaGKSTLlK~iLGll~p~~G~i~~~g~~~~~~~~~~~IgYVPQ~~~~d~~fP~tV~d~V~~g~~~~~g~~~~~ 112 (254)
T COG1121 33 TALIGPNGAGKSTLLKAILGLLKPSSGEIKIFGKPVRKRRKRLRIGYVPQKSSVDRSFPITVKDVVLLGRYGKKGWFRRL 112 (254)
T ss_pred EEEECCCCCCHHHHHHHHhCCCcCCcceEEEccccccccccCCeEEEcCcccccCCCCCcCHHHHHHccCcccccccccc
Confidence 356679999999999998762 223222211111111 1223455654 343333333444444333222
Q ss_pred ---HHHHHHHHHHHcCCC
Q psy5298 76 ---SLIATREALADAKWN 90 (109)
Q Consensus 76 ---al~a~~eAl~~agl~ 90 (109)
-...+.+||+.-|+.
T Consensus 113 ~~~d~~~v~~aL~~Vgm~ 130 (254)
T COG1121 113 NKKDKEKVDEALERVGME 130 (254)
T ss_pred cHHHHHHHHHHHHHcCch
Confidence 247789999998875
Done!