RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy5298
(109 letters)
>2iwz_A 3-oxoacyl-[acyl-carrier-protein] synthase; mitochondria,
mitochondrion, lipid synthesis, fatty acid SYN fatty
acid biosynthesis; 1.65A {Homo sapiens} PDB: 2iwy_A
2c9h_A
Length = 438
Score = 117 bits (296), Expect = 6e-33
Identities = 37/114 (32%), Positives = 63/114 (55%), Gaps = 6/114 (5%)
Query: 1 MKRVVVTGLGIVSPVGTTRQSAWNAIKEGKACVSPLSEPEYSKLPCKIAARIEGLDLTAQ 60
+RVV+TG+G+V+P+G W+ + G++ + L EY +PC +AA + Q
Sbjct: 20 HRRVVITGIGLVTPLGVGTHLVWDRLIGGESGIVSLVGEEYKSIPCSVAAYVPRGSDEGQ 79
Query: 61 FTQSK------LRTMSRATAFSLIATREALADAKWNPQNEKQKERTGVAVGTGM 108
F + +++MS T ++ A A+ D+ W+PQ+E + TGVA+G GM
Sbjct: 80 FNEQNFVSKSDIKSMSSPTIMAIGAAELAMKDSGWHPQSEADQVATGVAIGMGM 133
>4ewg_A Beta-ketoacyl synthase; ssgcid, structural genomics, seattle
structural genomics CEN infectious disease, transferase;
2.25A {Burkholderia phymatum}
Length = 412
Score = 116 bits (293), Expect = 1e-32
Identities = 34/109 (31%), Positives = 57/109 (52%), Gaps = 1/109 (0%)
Query: 1 MKRVVVTGLGIVSPVGTTRQSAWNAIKEGKACVSPLSE-PEYSKLPCKIAARIEGLDLTA 59
MKRVV+TG+G V+ +G+ A+K G+ V + + + L ++AA + G A
Sbjct: 5 MKRVVITGMGGVTALGSRWDEIEAALKAGRNAVRRMPDWDYFESLHTRLAAPLPGFAQPA 64
Query: 60 QFTQSKLRTMSRATAFSLIATREALADAKWNPQNEKQKERTGVAVGTGM 108
+ + K R+M R + +++ A+ ALADA + R GVA G+
Sbjct: 65 DWPRKKTRSMGRVSMYAVRASELALADAGFAGDESISDGRMGVAYGSSS 113
>3kzu_A 3-oxoacyl-(acyl-carrier-protein) synthase II; seattle structural
genomics center for infectious disease, ssgcid,
acyltransferase; 1.75A {Brucella melitensis} PDB: 3e60_A
Length = 428
Score = 113 bits (285), Expect = 2e-31
Identities = 36/115 (31%), Positives = 63/115 (54%), Gaps = 7/115 (6%)
Query: 1 MKRVVVTGLGIVSPVGTTRQSAWNAIKEGKACVSPLSEPEYSKLPCKIAARI-------E 53
M+RVV+TGLG+VSP+ + + W + G++ ++E E L C+IA RI
Sbjct: 9 MRRVVITGLGLVSPLASGVEETWKRLLAGESGARRVTEFEVDDLACQIACRIPVGDGTNG 68
Query: 54 GLDLTAQFTQSKLRTMSRATAFSLIATREALADAKWNPQNEKQKERTGVAVGTGM 108
+ + R + +++ A +AL DA W+P+N++ + RTGV +G+G+
Sbjct: 69 TFNPDLHMDPKEQRKVDPFIVYAVGAADQALDDAGWHPENDEDQVRTGVLIGSGI 123
>2vba_A 3-oxoacyl-[acyl-carrier-protein] synthase 1; cytoplasm, antibiotic,
transferase, amino-thiazole, acyltransferase, lipid
synthesis; HET: P4T; 1.36A {Escherichia coli} SCOP:
c.95.1.1 c.95.1.1 PDB: 1fj4_A* 1g5x_A 2aq7_A* 1fj8_A*
2aqb_A 2bui_A 2buh_A 2vb7_A* 2vb8_A 2vb9_A* 1h4f_A
1dd8_A 2cdh_A 2bz4_A 2byz_A 2bz3_A* 2byy_A* 1f91_A*
2cf2_A 2byw_A ...
Length = 406
Score = 112 bits (284), Expect = 2e-31
Identities = 33/107 (30%), Positives = 62/107 (57%), Gaps = 1/107 (0%)
Query: 1 MKRVVVTGLGIVSPVGTTRQSAWNAIKEGKACVSPLSEPEYSKLPCKIAARIEGLDLTAQ 60
MKR V+TGLGIVS +G +Q +++EG++ ++ E + S + + ++ LD T
Sbjct: 1 MKRAVITGLGIVSSIGNNQQEVLASLREGRSGITFSQELKDSGMRSHVWGNVK-LDTTGL 59
Query: 61 FTQSKLRTMSRATAFSLIATREALADAKWNPQNEKQKERTGVAVGTG 107
+ +R MS A+ ++ ++ +A+ADA +P+ + R G+ G+G
Sbjct: 60 IDRKVVRFMSDASIYAFLSMEQAIADAGLSPEAYQNNPRVGLIAGSG 106
>3mqd_A Beta-ketoacyl synthase; ssgcid, ALS collaborative crystallography,
beta-ketoacyl SYN brucella melitensis, fragments of
LIFE; HET: 3MQ; 1.25A {Brucella melitensis biovar
abortus} PDB: 3lrf_A* 3u0e_A* 3u0f_A*
Length = 428
Score = 111 bits (279), Expect = 2e-30
Identities = 35/108 (32%), Positives = 59/108 (54%), Gaps = 2/108 (1%)
Query: 1 MKRVVVTGLGIVSPVGTTRQSAWNAIKEGKACVSPLSEPEYSKLPCKIAARIEGLDLTAQ 60
M+RVVVTG+GIVS +G+ + +++E K+ +S E C++ +D+ +
Sbjct: 22 MRRVVVTGMGIVSSIGSNTEEVTASLREAKSGISRAEEYAELGFRCQVHGAP-DIDIESL 80
Query: 61 FTQSKLRTMSRATAFSLIATREALADAKWNPQNEKQKERTGVAVGTGM 108
+ +R R TA++ IA +A+ADA E ERTG+ +G+G
Sbjct: 81 VDRRAMRFHGRGTAWNHIAMDQAIADAGLTE-EEVSNERTGIIMGSGG 127
>4ddo_A 3-oxoacyl-[acyl-carrier-protein] synthase 2; ssgcid, struct
genomics, seattle structural genomics center for
infectious transferase; 1.90A {Burkholderia
vietnamiensis} PDB: 4f32_A*
Length = 451
Score = 110 bits (278), Expect = 2e-30
Identities = 38/116 (32%), Positives = 59/116 (50%), Gaps = 8/116 (6%)
Query: 1 MKRVVVTGLGIVSPVGTTRQSAWNAIKEGKACVSPLSEPEYSKLPCKIAARI-------- 52
RVVVTG+GIVSP+G ++ W + G + + L + +L K+ +
Sbjct: 23 TLRVVVTGIGIVSPLGCGKELVWQRLIGGGSGLRRLGDDIAGELSAKVGGTVQDVAEDPE 82
Query: 53 EGLDLTAQFTQSKLRTMSRATAFSLIATREALADAKWNPQNEKQKERTGVAVGTGM 108
G D +LR M R +++A EALA+A W P+ E+Q+ERT V +G+
Sbjct: 83 GGFDPERSVPHKELRKMDRFIQMAMVAADEALAEAGWAPEAEQQRERTATVVASGI 138
>2ix4_A 3-oxoacyl-[acyl-carrier-protein] synthase; beta-ketoacyl-(acyl
carrier protein) synthase, lipid metabol condensing
enzyme; 1.95A {Arabidopsis thaliana} SCOP: c.95.1.1
c.95.1.1 PDB: 1w0i_A
Length = 431
Score = 107 bits (269), Expect = 3e-29
Identities = 36/124 (29%), Positives = 66/124 (53%), Gaps = 17/124 (13%)
Query: 2 KRVVVTGLGIVSPVGTTRQSAWNAIKEGKACVSPLS--------------EPEYSKLPCK 47
+RVVVTGLG+V+P+G ++ W + +G+ + L+ + +L K
Sbjct: 1 RRVVVTGLGMVTPLGRGVETTWRRLIDGECGIRGLTLDDLKMKSFDEETKLYTFDQLSSK 60
Query: 48 IAARIEGLDLTAQFTQSKL---RTMSRATAFSLIATREALADAKWNPQNEKQKERTGVAV 104
+AA + +F ++ + ++ +++ A EAL DA+W P E++KERTGV++
Sbjct: 61 VAAFVPYGSNPGEFDEALWLNSKAVANFIGYAVCAADEALRDAEWLPTEEEEKERTGVSI 120
Query: 105 GTGM 108
G G+
Sbjct: 121 GGGI 124
>3ho9_A 3-oxoacyl-[acyl-carrier-protein] synthase 2; FABF, platensimycin,
platencin A1, KAS2, acyltransferase, fatty acid
biosynthesis; HET: N3A; 1.90A {Escherichia coli} PDB:
3hnz_A* 3ho2_A* 3i8p_A* 3g11_A* 2gfx_A* 3g0y_A* 2gfv_A*
2gfw_A 2gfy_A* 1kas_A 1b3n_A
Length = 427
Score = 107 bits (269), Expect = 4e-29
Identities = 32/108 (29%), Positives = 57/108 (52%), Gaps = 1/108 (0%)
Query: 1 MKRVVVTGLGIVSPVGTTRQSAWNAIKEGKACVSPLSEPEYSKLPCKIAARIEGLDLTAQ 60
+RVVVTGLG++SPVG T +S W A+ G++ +S + + S K A ++ +
Sbjct: 17 KRRVVVTGLGMLSPVGNTVESTWKALLAGQSGISLIDHFDTSAYATKFAGLVKDFNCEDI 76
Query: 61 FTQSKLRTMSRATAFSLIATREALADAKWNPQNEKQKERTGVAVGTGM 108
++ + R M + ++A +A+ D+ E R G A+G+G+
Sbjct: 77 ISRKEQRKMDAFIQYGIVAGVQAMQDSGLEITEE-NATRIGAAIGSGI 123
>1ox0_A Beta ketoacyl-acyl carrier protein synthase; transferase; 1.30A
{Streptococcus pneumoniae} SCOP: c.95.1.1 c.95.1.1 PDB:
1oxh_A 2alm_A 2rjt_A
Length = 430
Score = 106 bits (267), Expect = 8e-29
Identities = 30/108 (27%), Positives = 55/108 (50%), Gaps = 1/108 (0%)
Query: 1 MKRVVVTGLGIVSPVGTTRQSAWNAIKEGKACVSPLSEPEYSKLPCKIAARIEGLDLTAQ 60
+ RVVVTG G+ SP+G T + WN++ GK + +++ ++S AA I+
Sbjct: 22 LNRVVVTGYGVTSPIGNTPEEFWNSLATGKIGIGGITKFDHSDFDVHNAAEIQDFPFDKY 81
Query: 61 FTQSKLRTMSRATAFSLIATREALADAKWNPQNEKQKERTGVAVGTGM 108
F + + ++L A +EA+ A + + ++R GV V +G+
Sbjct: 82 FVKKDTNRFDNYSLYALYAAQEAVNHANLDVEAL-NRDRFGVIVASGI 128
>1tqy_B Actinorhodin polyketide putative beta-ketoacyl SY;
alpha-beta-alpha-beta-alpha, heterodimer, transferase;
2.00A {Streptomyces coelicolor} SCOP: c.95.1.1 c.95.1.1
Length = 415
Score = 105 bits (264), Expect = 2e-28
Identities = 28/108 (25%), Positives = 50/108 (46%), Gaps = 1/108 (0%)
Query: 1 MKRVVVTGLGIVSPVGTTRQSAWNAIKEGKACVSPLSEPEYSKLPCKIAARIEGLDLTAQ 60
K V++TG+G+V+P G W+A+ +G+ + P++ + S+ P +A +I+
Sbjct: 8 DKSVLITGVGVVAPNGLGLAPYWSAVLDGRHGLGPVTRFDVSRYPATLAGQIDDFHAPDH 67
Query: 61 FTQSKLRTMSRATAFSLIATREALADAKWNPQNEKQKERTGVAVGTGM 108
L +T +L A AL DAK +P++ GV
Sbjct: 68 IPGRLLPQTDPSTRLALTAADWALQDAKADPESL-TDYDMGVVTANAC 114
>3o04_A LMO2201 protein, beta-keto-acyl carrier protein synthase II; csgid,
structural genomics; 1.85A {Listeria monocytogenes}
Length = 413
Score = 105 bits (264), Expect = 2e-28
Identities = 31/108 (28%), Positives = 57/108 (52%), Gaps = 1/108 (0%)
Query: 1 MKRVVVTGLGIVSPVGTTRQSAWNAIKEGKACVSPLSEPEYSKLPCKIAARIEGLDLTAQ 60
+RVVVTG+G V+P+G +++W K+G V+ ++ P KIAA ++ D+
Sbjct: 3 KRRVVVTGIGAVTPIGNDAETSWENAKKGVNGVAKMTRLNPDDFPVKIAAELKDFDVEKY 62
Query: 61 FTQSKLRTMSRATAFSLIATREALADAKWNPQNEKQKERTGVAVGTGM 108
+ + R M R T +++ + A+ D+ + R GV +G+G+
Sbjct: 63 LEKKEARKMDRFTHYAIASAEMAVQDSGLVIDDS-NANRVGVWIGSGI 109
>1e5m_A KAS II, beta ketoacyl acyl carrier protein synthase II; condensing
enzyme, biosynthetic role, carbon-carbon bond formation;
1.54A {Synechocystis SP} SCOP: c.95.1.1 c.95.1.1
Length = 416
Score = 104 bits (263), Expect = 2e-28
Identities = 34/108 (31%), Positives = 58/108 (53%), Gaps = 1/108 (0%)
Query: 1 MKRVVVTGLGIVSPVGTTRQSAWNAIKEGKACVSPLSEPEYSKLPCKIAARIEGLDLTAQ 60
KRVVVTGLG ++P+G T Q W + EG+ + P++ + S C+ ++ D T
Sbjct: 6 KKRVVVTGLGAITPIGNTLQDYWQGLMEGRNGIGPITRFDASDQACRFGGEVKDFDATQF 65
Query: 61 FTQSKLRTMSRATAFSLIATREALADAKWNPQNEKQKERTGVAVGTGM 108
+ + + M R F++ A+++A+ DAK + GV +GTG+
Sbjct: 66 LDRKEAKRMDRFCHFAVCASQQAINDAKLVINEL-NADEIGVLIGTGI 112
>2gqd_A 3-oxoacyl-[acyl-carrier-protein] synthase 2; duplicated babababb
fold, transferase; 2.30A {Staphylococcus aureus}
Length = 437
Score = 105 bits (264), Expect = 2e-28
Identities = 28/107 (26%), Positives = 57/107 (53%), Gaps = 1/107 (0%)
Query: 2 KRVVVTGLGIVSPVGTTRQSAWNAIKEGKACVSPLSEPEYSKLPCKIAARIEGLDLTAQF 61
KRVV+TG+G +SP+G ++ W +G + ++ + +A ++ ++
Sbjct: 28 KRVVITGMGALSPIGNDVKTTWENALKGVNGIDKITRIDTEPYSVHLAGELKNFNIEDHI 87
Query: 62 TQSKLRTMSRATAFSLIATREALADAKWNPQNEKQKERTGVAVGTGM 108
+ + R M R T ++++A REA+ DA+ + +R GV +G+G+
Sbjct: 88 DKKEARRMDRFTQYAIVAAREAVKDAQLDINEN-TADRIGVWIGSGI 133
>1tqy_A Beta-ketoacyl synthase/acyl transferase;
alpha-beta-alpha-beta-alpha, heterodimer, transferase;
2.00A {Streptomyces coelicolor} SCOP: c.95.1.1 c.95.1.1
Length = 424
Score = 104 bits (263), Expect = 3e-28
Identities = 29/107 (27%), Positives = 53/107 (49%), Gaps = 1/107 (0%)
Query: 2 KRVVVTGLGIVSPVGTTRQSAWNAIKEGKACVSPLSEPEYSKLPCKIAARIEGLDLTAQF 61
+RVV+TG+G+ +P G + W + G+ +S + S ++AA + + F
Sbjct: 3 RRVVITGVGVRAPGGNGTRQFWELLTSGRTATRRISFFDPSPYRSQVAAEADFDPVAEGF 62
Query: 62 TQSKLRTMSRATAFSLIATREALADAKWNPQNEKQKERTGVAVGTGM 108
+L M RA+ F++ REA A + +P R GV++G+ +
Sbjct: 63 GPRELDRMDRASQFAVACAREAFAASGLDPDTL-DPARVGVSLGSAV 108
>2gp6_A 3-oxoacyl-[acyl-carrier-protein] synthase 2; thiolase fold,
structural genomics, PSI, protein structure initiative;
2.40A {Mycobacterium tuberculosis}
Length = 434
Score = 104 bits (262), Expect = 4e-28
Identities = 25/110 (22%), Positives = 50/110 (45%), Gaps = 6/110 (5%)
Query: 1 MKRVVVTGLGIVSPVGTTRQSAWNAIKEGKACVSPLSEPEYSK--LPCKIAARIEGLDLT 58
VVVTG+ + + + T ++ W + + ++ + L +P + LP +I + +
Sbjct: 27 FPYVVVTGIAMTTALATDAETTWKLLLDRQSGIRTLDDPFVEEFDLPVRIGGHLLE-EFD 85
Query: 59 AQFTQSKLRTMSRATAFSLIATREALADAKWNPQNEKQKERTGVAVGTGM 108
Q T+ +LR M S + +R +A + R V++GTG+
Sbjct: 86 HQLTRIELRRMGYLQRMSTVLSRRLWENAGSPEVD---TNRLMVSIGTGL 132
>1j3n_A 3-oxoacyl-(acyl-carrier protein) synthase II; condensing enzymes,
fatty acid elongation, acyl-carrier protein (ACP); HET:
CIT; 2.00A {Thermus thermophilus} SCOP: c.95.1.1
c.95.1.1
Length = 408
Score = 103 bits (259), Expect = 9e-28
Identities = 42/108 (38%), Positives = 66/108 (61%), Gaps = 2/108 (1%)
Query: 1 MKRVVVTGLGIVSPVGTTRQSAWNAIKEGKACVSPLSEPEYSKLPCKIAARIEGLDLTAQ 60
M+RVVVTGLG ++P+G +++ A GK+ V P++ + S LP +IAA ++ +D A
Sbjct: 1 MRRVVVTGLGALTPIGVGQEAFHKAQLAGKSGVRPITRFDASALPVRIAAEVD-VDPGAY 59
Query: 61 FTQSKLRTMSRATAFSLIATREALADAKWNPQNEKQKERTGVAVGTGM 108
+ +LR + R ++LIA + AL DA P++ ER G VGTG+
Sbjct: 60 LDRKELRRLDRFVQYALIAAQLALEDAGLKPEDL-DPERVGTLVGTGI 106
>2wge_A 3-oxoacyl-[acyl-carrier-protein] synthase 1; beta ketoacyl synthase
I thiolactomycin, cytoplasm, transferase,
acyltransferase; HET: TLM; 1.80A {Mycobacterium
tuberculosis} PDB: 2wgd_A* 2wgg_A* 2wgf_A*
Length = 416
Score = 101 bits (255), Expect = 3e-27
Identities = 21/110 (19%), Positives = 41/110 (37%), Gaps = 6/110 (5%)
Query: 1 MKRVVVTGLGIVSPVGTTRQSAWNAIKEGKACVSPLSE--PEYSKLPCKIAARIEGLDLT 58
VVVT + + + +S W + G++ + L + L KI ++ +
Sbjct: 11 FPSVVVTAVTATTSISPDIESTWKGLLAGESGIHALEDEFVTKWDLAVKIGGHLKD-PVD 69
Query: 59 AQFTQSKLRTMSRATAFSLIATREALADAKWNPQNEKQKERTGVAVGTGM 108
+ + +R MS + + A + +R V VGTG+
Sbjct: 70 SHMGRLDMRRMSYVQRMGKLLGGQLWESAGSPEVD---PDRFAVVVGTGL 116
>2pff_A Fatty acid synthase subunit alpha, 3-oxoacyl-[acyl-carrier-PR; fatty
acid synthase, acyl-carrier-protein, beta-ketoacyl RED
beta-ketoacyl synthase, dehydratase; 4.00A {Saccharomyces
cerevisiae}
Length = 1688
Score = 74.9 bits (184), Expect = 3e-17
Identities = 20/116 (17%), Positives = 37/116 (31%), Gaps = 16/116 (13%)
Query: 3 RVVVTGLG---IVSPVGTTRQSAWNAIKEGKACVSPLSEPEYSKLPCKIAARI-EGLDLT 58
G + + T + + +G L P+ + +A +I G +
Sbjct: 943 EQFKHQHGDKVDIFEIPETGE-YSVKLLKGAT----LYIPKALRFDRLVAGQIPTGWNAK 997
Query: 59 AQFTQSK--LRTMSRATAFSLIATREALADAKWNPQNEKQK----ERTGVAVGTGM 108
+ S + + T F L++ EA + E K G G+GM
Sbjct: 998 -TYGISDDIISQVDPITLFVLVSVVEAFIASGITDPYEMYKYVHVSEVGNCSGSGM 1052
Score = 29.8 bits (67), Expect = 0.13
Identities = 10/27 (37%), Positives = 13/27 (48%), Gaps = 1/27 (3%)
Query: 4 VVVTGLGIVSPVGTTRQSAWNAIKEGK 30
+VVTG V P G+ R W G+
Sbjct: 820 IVVTGFAEVGPWGSARTR-WEMEAFGE 845
>2uv8_A Fatty acid synthase subunit alpha (FAS2); fatty acid biosynthesis,
malonyl/palmitoyl transferase, phosphopantetheine,
transferase; HET: GVL FMN; 3.10A {Saccharomyces
cerevisiae} PDB: 2vkz_A* 3hmj_A*
Length = 1887
Score = 54.6 bits (131), Expect = 3e-10
Identities = 18/103 (17%), Positives = 34/103 (33%), Gaps = 11/103 (10%)
Query: 12 VSPVGTTRQSAWNAIKEGKACVSPLSEPEYSKLPCKIAARIE-GLDLTAQFTQSK-LRTM 69
+ + T + + +G L P+ + +A +I G + + +
Sbjct: 1154 IFEIPETGEY-SVKLLKGAT----LYIPKALRFDRLVAGQIPTGWNAKTYGISDDIISQV 1208
Query: 70 SRATAFSLIATREALADAKWNPQNEKQK----ERTGVAVGTGM 108
T F L++ EA + E K G G+GM
Sbjct: 1209 DPITLFVLVSVVEAFIASGITDPYEMYKYVHVSEVGNCSGSGM 1251
>2uv9_A Fatty acid synthase alpha subunits; fungal, dehydratase, enoyl
reductase, ketoacyl synthase, ketoacyl reductase; 3.1A
{Thermomyces lanuginosus} PDB: 2uvb_A*
Length = 1878
Score = 50.7 bits (121), Expect = 8e-09
Identities = 16/92 (17%), Positives = 31/92 (33%), Gaps = 7/92 (7%)
Query: 23 WNAIKEGKACVSPLSEPEYSKLPCKIAARI-EGLDLTAQFTQSK-LRTMSRATAFSLIAT 80
+ L P+ + +A +I G D ++ + T + L++
Sbjct: 1136 GQYTVRLRKGA-TLLIPKALQFDRLVAGQIPTGWDARRYGVPEDIIQQVDPVTLYVLVSV 1194
Query: 81 REALADAKWNPQNEKQK----ERTGVAVGTGM 108
EAL + E K G +G+G+
Sbjct: 1195 AEALLSSGITDPYEFYKYVHLSEVGNCIGSGV 1226
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 35.0 bits (80), Expect = 0.002
Identities = 15/50 (30%), Positives = 19/50 (38%), Gaps = 19/50 (38%)
Query: 53 EGLDLTAQFTQSKLRTMSRATAFSLIATR---------------E--ALA 85
L T QFTQ L M +A AF + ++ E ALA
Sbjct: 1724 GLLSAT-QFTQPALTLMEKA-AFEDLKSKGLIPADATFAGHSLGEYAALA 1771
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 7.94A {Bos
taurus}
Length = 190
Score = 32.1 bits (72), Expect = 0.021
Identities = 15/76 (19%), Positives = 25/76 (32%), Gaps = 25/76 (32%)
Query: 37 SEPEYSKLPCKI-------AARIEGLDLTAQFTQSKLRTMSRATAFSLIATREALAD--A 87
EPE I R++ LD A + +A ++ L +
Sbjct: 82 QEPE------SIRKWREEQRKRLQELD--AASKVMEQEWREKA--------KKDLEEWNQ 125
Query: 88 KWNPQNEKQKERTGVA 103
+ + Q EK K +A
Sbjct: 126 RQSEQVEKNKINNRIA 141
>1a2z_A Pyrrolidone carboxyl peptidase; N-pyroglutamate hydrolysis; 1.73A
{Thermococcus litoralis} SCOP: c.56.4.1
Length = 220
Score = 25.6 bits (55), Expect = 3.7
Identities = 11/56 (19%), Positives = 18/56 (32%), Gaps = 4/56 (7%)
Query: 1 MKRVVVTGLGIVSP-VGTTRQSAWNAIKEGKACVSPLSEPEYSKLPCKIAARIEGL 55
MK+V++TG P G ++ K + LP + L
Sbjct: 1 MKKVLITGFE---PFGGDSKNPTEQIAKYFDRKQIGNAMVYGRVLPVSVKRATIEL 53
>1a0p_A Site-specific recombinase XERD; DNA binding, DNA recombination;
2.50A {Escherichia coli} SCOP: a.60.9.1 d.163.1.1
Length = 290
Score = 24.4 bits (54), Expect = 9.5
Identities = 8/25 (32%), Positives = 11/25 (44%), Gaps = 7/25 (28%)
Query: 18 TRQSAWNAIKE-------GKACVSP 35
TRQ+ W+ IK +SP
Sbjct: 217 TRQTFWHRIKHYAVLAGIDSEKLSP 241
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.314 0.127 0.362
Gapped
Lambda K H
0.267 0.0839 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,589,278
Number of extensions: 79728
Number of successful extensions: 202
Number of sequences better than 10.0: 1
Number of HSP's gapped: 173
Number of HSP's successfully gapped: 26
Length of query: 109
Length of database: 6,701,793
Length adjustment: 73
Effective length of query: 36
Effective length of database: 4,663,560
Effective search space: 167888160
Effective search space used: 167888160
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 51 (23.2 bits)