RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy5298
(109 letters)
>d1j3na1 c.95.1.1 (A:1-249) Beta-ketoacyl-ACP synthase II {Thermus
thermophilus [TaxId: 274]}
Length = 249
Score = 94.8 bits (235), Expect = 5e-26
Identities = 42/108 (38%), Positives = 65/108 (60%), Gaps = 2/108 (1%)
Query: 1 MKRVVVTGLGIVSPVGTTRQSAWNAIKEGKACVSPLSEPEYSKLPCKIAARIEGLDLTAQ 60
M+RVVVTGLG ++P+G +++ A GK+ V P++ + S LP +IAA ++ D A
Sbjct: 1 MRRVVVTGLGALTPIGVGQEAFHKAQLAGKSGVRPITRFDASALPVRIAAEVDV-DPGAY 59
Query: 61 FTQSKLRTMSRATAFSLIATREALADAKWNPQNEKQKERTGVAVGTGM 108
+ +LR + R ++LIA + AL DA P++ ER G VGTG+
Sbjct: 60 LDRKELRRLDRFVQYALIAAQLALEDAGLKPEDL-DPERVGTLVGTGI 106
>d2gfva1 c.95.1.1 (A:2-251) Beta-ketoacyl-ACP synthase II
{Escherichia coli [TaxId: 562]}
Length = 250
Score = 81.8 bits (201), Expect = 7e-21
Identities = 32/107 (29%), Positives = 57/107 (53%), Gaps = 1/107 (0%)
Query: 2 KRVVVTGLGIVSPVGTTRQSAWNAIKEGKACVSPLSEPEYSKLPCKIAARIEGLDLTAQF 61
+RVVVTGLG++SPVG T +S W A+ G++ +S + + S K A ++ +
Sbjct: 2 RRVVVTGLGMLSPVGNTVESTWKALLAGQSGISLIDHFDTSAYATKFAGLVKDFNCEDII 61
Query: 62 TQSKLRTMSRATAFSLIATREALADAKWNPQNEKQKERTGVAVGTGM 108
++ + R M + ++A +A+ D+ E R G A+G+G+
Sbjct: 62 SRKEQRKMDAFIQYGIVAGVQAMQDSGLEITEE-NATRIGAAIGSGI 107
>d2vbaa1 c.95.1.1 (A:1-253) Beta-ketoacyl-ACP synthase I
{Escherichia coli [TaxId: 562]}
Length = 253
Score = 76.9 bits (188), Expect = 4e-19
Identities = 31/108 (28%), Positives = 60/108 (55%), Gaps = 1/108 (0%)
Query: 1 MKRVVVTGLGIVSPVGTTRQSAWNAIKEGKACVSPLSEPEYSKLPCKIAARIEGLDLTAQ 60
MKR V+TGLGIVS +G +Q +++EG++ ++ E + S + + ++ T
Sbjct: 1 MKRAVITGLGIVSSIGNNQQEVLASLREGRSGITFSQELKDSGMRSHVWGNVKLDT-TGL 59
Query: 61 FTQSKLRTMSRATAFSLIATREALADAKWNPQNEKQKERTGVAVGTGM 108
+ +R MS A+ ++ ++ +A+ADA +P+ + R G+ G+G
Sbjct: 60 IDRKVVRFMSDASIYAFLSMEQAIADAGLSPEAYQNNPRVGLIAGSGG 107
>d1e5ma1 c.95.1.1 (A:6-255) Beta-ketoacyl-ACP synthase II
{Synechocystis sp. [TaxId: 1143]}
Length = 250
Score = 76.1 bits (186), Expect = 9e-19
Identities = 34/107 (31%), Positives = 58/107 (54%), Gaps = 1/107 (0%)
Query: 2 KRVVVTGLGIVSPVGTTRQSAWNAIKEGKACVSPLSEPEYSKLPCKIAARIEGLDLTAQF 61
KRVVVTGLG ++P+G T Q W + EG+ + P++ + S C+ ++ D T
Sbjct: 2 KRVVVTGLGAITPIGNTLQDYWQGLMEGRNGIGPITRFDASDQACRFGGEVKDFDATQFL 61
Query: 62 TQSKLRTMSRATAFSLIATREALADAKWNPQNEKQKERTGVAVGTGM 108
+ + + M R F++ A+++A+ DAK + GV +GTG+
Sbjct: 62 DRKEAKRMDRFCHFAVCASQQAINDAKLVINEL-NADEIGVLIGTGI 107
>d1ox0a1 c.95.1.1 (A:-5-251) Beta-ketoacyl-ACP synthase II
{Streptococcus pneumoniae [TaxId: 1313]}
Length = 256
Score = 65.3 bits (158), Expect = 9e-15
Identities = 30/108 (27%), Positives = 55/108 (50%), Gaps = 1/108 (0%)
Query: 1 MKRVVVTGLGIVSPVGTTRQSAWNAIKEGKACVSPLSEPEYSKLPCKIAARIEGLDLTAQ 60
+ RVVVTG G+ SP+G T + WN++ GK + +++ ++S AA I+
Sbjct: 8 LNRVVVTGYGVTSPIGNTPEEFWNSLATGKIGIGGITKFDHSDFDVHNAAEIQDFPFDKY 67
Query: 61 FTQSKLRTMSRATAFSLIATREALADAKWNPQNEKQKERTGVAVGTGM 108
F + + ++L A +EA+ A + + ++R GV V +G+
Sbjct: 68 FVKKDTNRFDNYSLYALYAAQEAVNHANLDVEAL-NRDRFGVIVASGI 114
>d1tqya1 c.95.1.1 (A:3-218) Actinorhodin polyketide putative
beta-ketoacyl synthase 1, KasA {Streptomyces coelicolor
[TaxId: 1902]}
Length = 216
Score = 60.1 bits (144), Expect = 5e-13
Identities = 25/92 (27%), Positives = 45/92 (48%)
Query: 2 KRVVVTGLGIVSPVGTTRQSAWNAIKEGKACVSPLSEPEYSKLPCKIAARIEGLDLTAQF 61
+RVV+TG+G+ +P G + W + G+ +S + S ++AA + + F
Sbjct: 1 RRVVITGVGVRAPGGNGTRQFWELLTSGRTATRRISFFDPSPYRSQVAAEADFDPVAEGF 60
Query: 62 TQSKLRTMSRATAFSLIATREALADAKWNPQN 93
+L M RA+ F++ REA A + +P
Sbjct: 61 GPRELDRMDRASQFAVACAREAFAASGLDPDT 92
>d2ix4a1 c.95.1.1 (A:31-300) Beta-ketoacyl-ACP synthase II {Thale
cress (Arabidopsis thaliana), mitochondrial isoform
[TaxId: 3702]}
Length = 270
Score = 58.5 bits (140), Expect = 3e-12
Identities = 37/124 (29%), Positives = 63/124 (50%), Gaps = 17/124 (13%)
Query: 2 KRVVVTGLGIVSPVGTTRQSAWNAIKEGKACVSPLSEPEYS--------------KLPCK 47
+RVVVTGLG+V+P+G ++ W + +G+ + L+ + +L K
Sbjct: 1 RRVVVTGLGMVTPLGRGVETTWRRLIDGECGIRGLTLDDLKMKSFDEETKLYTFDQLSSK 60
Query: 48 IAARIEGLDLTAQFTQSKLRTMSRATAF---SLIATREALADAKWNPQNEKQKERTGVAV 104
+AA + +F ++ F ++ A EAL DA+W P E++KERTGV++
Sbjct: 61 VAAFVPYGSNPGEFDEALWLNSKAVANFIGYAVCAADEALRDAEWLPTEEEEKERTGVSI 120
Query: 105 GTGM 108
G G+
Sbjct: 121 GGGI 124
>d1tqyb1 c.95.1.1 (B:2-209) Actinorhodin polyketide putative
beta-ketoacyl synthase 2, KasB {Streptomyces coelicolor
[TaxId: 1902]}
Length = 208
Score = 52.0 bits (123), Expect = 6e-10
Identities = 14/46 (30%), Positives = 29/46 (63%)
Query: 4 VVVTGLGIVSPVGTTRQSAWNAIKEGKACVSPLSEPEYSKLPCKIA 49
V++TG+G+V+P G W+A+ +G+ + P++ + S+ P +A
Sbjct: 2 VLITGVGVVAPNGLGLAPYWSAVLDGRHGLGPVTRFDVSRYPATLA 47
>d1oiha_ b.82.2.5 (A:) Putative alkylsulfatase AtsK {Pseudomonas
putida [TaxId: 303]}
Length = 288
Score = 25.3 bits (54), Expect = 1.6
Identities = 6/33 (18%), Positives = 14/33 (42%)
Query: 40 EYSKLPCKIAARIEGLDLTAQFTQSKLRTMSRA 72
+ + +I A I G+ L+ + + + A
Sbjct: 4 DVHPVAGRIGAEIRGVKLSPDLDAATVEAIQAA 36
>d1otja_ b.82.2.5 (A:) Taurine/alpha-ketoglutarate dioxygenase
TauD {Escherichia coli [TaxId: 562]}
Length = 281
Score = 24.5 bits (52), Expect = 3.2
Identities = 9/33 (27%), Positives = 15/33 (45%)
Query: 40 EYSKLPCKIAARIEGLDLTAQFTQSKLRTMSRA 72
+ L I A+I G DLT + ++ + A
Sbjct: 5 SITPLGPYIGAQISGADLTRPLSDNQFEQLYHA 37
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.314 0.127 0.362
Gapped
Lambda K H
0.267 0.0434 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 365,951
Number of extensions: 13658
Number of successful extensions: 37
Number of sequences better than 10.0: 1
Number of HSP's gapped: 35
Number of HSP's successfully gapped: 11
Length of query: 109
Length of database: 2,407,596
Length adjustment: 68
Effective length of query: 41
Effective length of database: 1,473,956
Effective search space: 60432196
Effective search space used: 60432196
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 47 (22.6 bits)