Query psy5299
Match_columns 75
No_of_seqs 42 out of 44
Neff 2.6
Searched_HMMs 29240
Date Fri Aug 16 22:59:21 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy5299.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/5299hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3smt_A Histone-lysine N-methyl 99.0 3.8E-11 1.3E-15 92.9 1.0 59 1-59 251-310 (497)
2 3qxy_A N-lysine methyltransfer 98.4 7.5E-08 2.6E-12 73.1 1.2 58 1-59 197-259 (449)
3 2h21_A Ribulose-1,5 bisphospha 98.1 9E-07 3.1E-11 65.7 1.7 44 16-59 183-237 (440)
4 3n71_A Histone lysine methyltr 82.3 0.59 2E-05 35.6 1.9 46 16-61 194-252 (490)
5 3qww_A SET and MYND domain-con 82.2 0.78 2.7E-05 34.4 2.6 44 16-60 195-239 (433)
6 3qwp_A SET and MYND domain-con 77.2 1.4 4.8E-05 32.7 2.5 44 16-60 195-239 (429)
7 1n3j_A A612L, histone H3 lysin 77.1 0.8 2.7E-05 28.4 1.0 42 18-59 60-103 (119)
8 3ru6_A Orotidine 5'-phosphate 76.2 0.53 1.8E-05 35.2 0.0 27 21-47 270-297 (303)
9 2end_A Endonuclease V; 1.45A { 52.5 3.5 0.00012 28.7 0.4 12 1-12 1-12 (138)
10 3s8p_A Histone-lysine N-methyl 42.9 8.6 0.00029 28.4 1.2 38 22-59 205-243 (273)
11 3rq4_A Histone-lysine N-methyl 42.5 9.8 0.00033 27.4 1.4 37 23-59 177-214 (247)
12 3c2q_A Uncharacterized conserv 34.4 13 0.00043 29.2 1.0 19 41-59 61-79 (345)
13 3f9x_A Histone-lysine N-methyl 30.7 17 0.00059 23.0 1.0 35 25-59 110-148 (166)
No 1
>3smt_A Histone-lysine N-methyltransferase SETD3; histone methyltransferase, histone modification, LYSI translational modification, structural genomics; HET: SAM; 2.04A {Homo sapiens}
Probab=99.03 E-value=3.8e-11 Score=92.94 Aligned_cols=59 Identities=31% Similarity=0.531 Sum_probs=53.3
Q ss_pred CcccccccCcCCCCceeeccccccccCCCCCCCCcccccc-cceeeecccCCCCCCcchh
Q psy5299 1 MTRLNAVPSVNEDSEVHALIPVWDMCNHENGRSEPKEKTR-NRSLLLSPHNAPMAIPVVV 59 (75)
Q Consensus 1 MTRQN~VP~~~~~~~i~ALIPlWDM~NH~~G~itT~yd~~-~r~ec~A~~d~~~~~~v~~ 59 (75)
|||.+.+|..+|.....||+|++||+||+++..++.|+.+ ++.++.|.+++++||||.+
T Consensus 251 ~SRa~~~~~~~g~~~~~~LvP~~Dm~NH~~~~~~~~~~~~~~~~~~~a~~~i~~Geei~i 310 (497)
T 3smt_A 251 MTRQNQIPTEDGSRVTLALIPLWDMCNHTNGLITTGYNLEDDRCECVALQDFRAGEQIYI 310 (497)
T ss_dssp HHHCEEEECTTSSSEEEEECTTGGGCEECSCSEEEEEETTTTEEEEEESSCBCTTCEEEE
T ss_pred ecccccccCcccccccceeechHHhhcCCCcccceeeeccCCeEEEEeCCccCCCCEEEE
Confidence 5799999988877678899999999999999988888887 8899999999999999875
No 2
>3qxy_A N-lysine methyltransferase SETD6; epigenetics, protein lysine methyltransferase, transferase, network VIA methyllysine signaling; HET: SAM; 2.09A {Homo sapiens} PDB: 3rc0_A*
Probab=98.37 E-value=7.5e-08 Score=73.10 Aligned_cols=58 Identities=16% Similarity=0.208 Sum_probs=44.1
Q ss_pred CcccccccCcCC----CCceeeccccccccCCCCCC-CCcccccccceeeecccCCCCCCcchh
Q psy5299 1 MTRLNAVPSVNE----DSEVHALIPVWDMCNHENGR-SEPKEKTRNRSLLLSPHNAPMAIPVVV 59 (75)
Q Consensus 1 MTRQN~VP~~~~----~~~i~ALIPlWDM~NH~~G~-itT~yd~~~r~ec~A~~d~~~~~~v~~ 59 (75)
|||...+|..++ .....+|+|++||+||+.+. ..-.|+. ++.++.|.+++++||||.+
T Consensus 197 ~SRsf~~~~~~~~~~~~~~~~~LvP~~D~~NH~~~~~~~~~~~~-~~~~~~a~~~i~~Geei~~ 259 (449)
T 3qxy_A 197 MAYSFQEPLEEEEDEKEPNSPVMVPAADILNHLANHNANLEYSA-NCLRMVATQPIPKGHEIFN 259 (449)
T ss_dssp HHHCBCCCCC-----CCCCCCBBCTTGGGCEECSSCSEEEEECS-SEEEEEESSCBCTTCEEEE
T ss_pred HHHhcccccCcccccccCCceeEeecHHHhcCCCCCCeEEEEeC-CeEEEEECCCcCCCchhhc
Confidence 478887775422 24578999999999999853 4445554 6789999999999999975
No 3
>2h21_A Ribulose-1,5 bisphosphate carboxylase/oxygenase; SET domain, protein lysine methyltransferase, transferase; HET: SAM; 2.45A {Pisum sativum} SCOP: a.166.1.1 b.85.7.3 PDB: 2h23_A* 2h2e_A* 2h2j_A* 1p0y_A* 1ozv_A* 1mlv_A*
Probab=98.09 E-value=9e-07 Score=65.75 Aligned_cols=44 Identities=20% Similarity=0.197 Sum_probs=33.9
Q ss_pred eeeccccccccCCCCCCCC--cccc---------cccceeeecccCCCCCCcchh
Q psy5299 16 VHALIPVWDMCNHENGRSE--PKEK---------TRNRSLLLSPHNAPMAIPVVV 59 (75)
Q Consensus 16 i~ALIPlWDM~NH~~G~it--T~yd---------~~~r~ec~A~~d~~~~~~v~~ 59 (75)
..+|+|++||+||+.+.-. ..|+ ...+.+..|.+++++||||..
T Consensus 183 ~~~LvP~~D~~NH~~~~~~~~~~~~~~~~~~~~~~~~~~~l~a~~~i~~Geei~~ 237 (440)
T 2h21_A 183 NLVVVPMADLINHSAGVTTEDHAYEVKGAAGLFSWDYLFSLKSPLSVKAGEQVYI 237 (440)
T ss_dssp CCBCCSSTTSCEECTTCCCCCCEEEC----------CEEEEEESSCBCTTSBCEE
T ss_pred ceEEeechHhhcCCCCcccccceeeecCcccccCCCceEEEEECCCCCCCCEEEE
Confidence 5799999999999987642 1222 236788899999999999975
No 4
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=82.33 E-value=0.59 Score=35.64 Aligned_cols=46 Identities=15% Similarity=0.065 Sum_probs=35.5
Q ss_pred eeeccccccccCCCCCC-CCccccccc------------ceeeecccCCCCCCcchhHH
Q psy5299 16 VHALIPVWDMCNHENGR-SEPKEKTRN------------RSLLLSPHNAPMAIPVVVPI 61 (75)
Q Consensus 16 i~ALIPlWDM~NH~~G~-itT~yd~~~------------r~ec~A~~d~~~~~~v~~~~ 61 (75)
-.+|-|...++||+.-+ ....|+..+ +..-.|.+|.++||.+.+..
T Consensus 194 g~gl~p~~s~~NHSC~PN~~~~~~~~~~~~~~~~~~~~~~~~v~A~rdI~~GEEltisY 252 (490)
T 3n71_A 194 GVGIFPNLGLVNHDCWPNCTVIFNNGNHEAVKSMFHTQMRIELRALGKISEGEELTVSY 252 (490)
T ss_dssp EEEECTTGGGCEECSSCSEEEEEECCCCSSSCCCGGGSCEEEEEESSCBCTTCBCEECS
T ss_pred eEEEchhhhhcccCCCCCeeEEecCCccccccccccccceEEEEECCCCCCCCEEEEee
Confidence 36899999999999844 444444432 78899999999999987643
No 5
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=82.24 E-value=0.78 Score=34.43 Aligned_cols=44 Identities=14% Similarity=-0.004 Sum_probs=35.0
Q ss_pred eeeccccccccCCCCCC-CCcccccccceeeecccCCCCCCcchhH
Q psy5299 16 VHALIPVWDMCNHENGR-SEPKEKTRNRSLLLSPHNAPMAIPVVVP 60 (75)
Q Consensus 16 i~ALIPlWDM~NH~~G~-itT~yd~~~r~ec~A~~d~~~~~~v~~~ 60 (75)
-.+|-|...++||+.-+ ....|+. ....-.|.+|.++||.+.+.
T Consensus 195 g~gl~p~~s~~NHsC~PN~~~~~~~-~~~~~~a~r~I~~Geel~i~ 239 (433)
T 3qww_A 195 GSAIFPDVALMNHSCCPNVIVTYKG-TLAEVRAVQEIHPGDEVFTS 239 (433)
T ss_dssp EEEECTTGGGSEECSSCSEEEEEET-TEEEEEESSCBCTTCEEEEC
T ss_pred eEEecccccccCCCCCCCceEEEcC-CEEEEEeccCcCCCCEEEEe
Confidence 47899999999999844 4444543 67788999999999998653
No 6
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=77.19 E-value=1.4 Score=32.67 Aligned_cols=44 Identities=14% Similarity=0.073 Sum_probs=35.2
Q ss_pred eeeccccccccCCCCCC-CCcccccccceeeecccCCCCCCcchhH
Q psy5299 16 VHALIPVWDMCNHENGR-SEPKEKTRNRSLLLSPHNAPMAIPVVVP 60 (75)
Q Consensus 16 i~ALIPlWDM~NH~~G~-itT~yd~~~r~ec~A~~d~~~~~~v~~~ 60 (75)
-.+|-|.-.++||+.-+ ....|+ .....-.|.+|.++||.+.+.
T Consensus 195 g~~l~~~~s~~NHsC~PN~~~~~~-~~~~~~~a~r~I~~GeEl~is 239 (429)
T 3qwp_A 195 GVGLYPSISLLNHSCDPNCSIVFN-GPHLLLRAVRDIEVGEELTIC 239 (429)
T ss_dssp EEEECTTGGGCEECSSCSEEEEEE-TTEEEEEECSCBCTTCEEEEC
T ss_pred eEEEchhhHhhCcCCCCCeEEEEe-CCEEEEEEeeeECCCCEEEEE
Confidence 47899999999999844 444455 367888999999999998753
No 7
>1n3j_A A612L, histone H3 lysine methyltransferase; beta barrel, homodimer; NMR {Paramecium bursaria chlorella virus 1} SCOP: b.85.7.2 PDB: 2g46_A* 3kma_A 3kmj_A 3kmt_A*
Probab=77.06 E-value=0.8 Score=28.35 Aligned_cols=42 Identities=7% Similarity=0.139 Sum_probs=31.0
Q ss_pred eccccccccCCCCC-CCCcccccc-cceeeecccCCCCCCcchh
Q psy5299 18 ALIPVWDMCNHENG-RSEPKEKTR-NRSLLLSPHNAPMAIPVVV 59 (75)
Q Consensus 18 ALIPlWDM~NH~~G-~itT~yd~~-~r~ec~A~~d~~~~~~v~~ 59 (75)
.+-|+=.++||+.- .....++.. .+....|.+|.++||.+.+
T Consensus 60 ~~~~~~~~~NHsc~pN~~~~~~~~~~~~~~~A~rdI~~GeElt~ 103 (119)
T 1n3j_A 60 MALGFGAIFNHSKDPNARHELTAGLKRMRIFTIKPIAIGEEITI 103 (119)
T ss_dssp EESSSHHHHHSCSSCCCEEEECSSSSCEEEEECSCBCSSEEECC
T ss_pred cccCceeeeccCCCCCeeEEEECCCeEEEEEEccccCCCCEEEE
Confidence 34556678999974 444455544 7889999999999998754
No 8
>3ru6_A Orotidine 5'-phosphate decarboxylase; structural genomics, center for structural genomics of infec diseases (csgid), TIM-barrel; 1.80A {Campylobacter jejuni subsp}
Probab=76.19 E-value=0.53 Score=35.19 Aligned_cols=27 Identities=22% Similarity=0.460 Sum_probs=0.0
Q ss_pred ccccccCCCCCCCCcccccc-cceeeec
Q psy5299 21 PVWDMCNHENGRSEPKEKTR-NRSLLLS 47 (75)
Q Consensus 21 PlWDM~NH~~G~itT~yd~~-~r~ec~A 47 (75)
--||||||----|.|.-|.+ ---|-+|
T Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 297 (303)
T 3ru6_A 270 KEWDMCNHFEEWIKTRPDKEHALKEFYA 297 (303)
T ss_dssp ----------------------------
T ss_pred HHHHHHHHHHHHHhcCCcHHHHHHHHHH
Confidence 35999999888888777666 3334443
No 9
>2end_A Endonuclease V; 1.45A {Enterobacteria phage T4} SCOP: a.18.1.1 PDB: 1enj_A 1eni_A 1enk_A 2fcc_A* 1vas_A*
Probab=52.54 E-value=3.5 Score=28.66 Aligned_cols=12 Identities=33% Similarity=0.299 Sum_probs=9.3
Q ss_pred CcccccccCcCC
Q psy5299 1 MTRLNAVPSVNE 12 (75)
Q Consensus 1 MTRQN~VP~~~~ 12 (75)
|||-|.||.++-
T Consensus 1 MTRIn~ipp~eL 12 (138)
T 2end_A 1 MTRINLTLVSEL 12 (138)
T ss_dssp -CCCCCSCGGGS
T ss_pred CCcccccCHHHH
Confidence 999999997744
No 10
>3s8p_A Histone-lysine N-methyltransferase SUV420H1; SET domain, histone methyltransferase, transcription regulat histone lysine, SAM, methylation, nucleus; HET: MSE SAM; 1.85A {Homo sapiens}
Probab=42.90 E-value=8.6 Score=28.35 Aligned_cols=38 Identities=8% Similarity=-0.033 Sum_probs=27.5
Q ss_pred cccccCCCCCCCCcccccc-cceeeecccCCCCCCcchh
Q psy5299 22 VWDMCNHENGRSEPKEKTR-NRSLLLSPHNAPMAIPVVV 59 (75)
Q Consensus 22 lWDM~NH~~G~itT~yd~~-~r~ec~A~~d~~~~~~v~~ 59 (75)
.--++||+.-+=....... .+....|.+|.++||++.+
T Consensus 205 ~arfiNHSC~PN~~~~~~~~~~i~i~A~RdI~~GEELt~ 243 (273)
T 3s8p_A 205 PAAFINHDCRPNCKFVSTGRDTACVKALRDIEPGEEISC 243 (273)
T ss_dssp GGGGCEECSSCSEEEEEEETTEEEEEESSCBCTTCBCEE
T ss_pred hHHhhCCCCCCCeEEEEcCCCEEEEEECceeCCCCEEEE
Confidence 3468899986543333223 6888999999999999764
No 11
>3rq4_A Histone-lysine N-methyltransferase SUV420H2; suppressor, variegation 4-20 homolog 2, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.80A {Homo sapiens}
Probab=42.47 E-value=9.8 Score=27.45 Aligned_cols=37 Identities=11% Similarity=-0.042 Sum_probs=27.3
Q ss_pred ccccCCCCCCCCcccccc-cceeeecccCCCCCCcchh
Q psy5299 23 WDMCNHENGRSEPKEKTR-NRSLLLSPHNAPMAIPVVV 59 (75)
Q Consensus 23 WDM~NH~~G~itT~yd~~-~r~ec~A~~d~~~~~~v~~ 59 (75)
--++||+.-+=....... .+..-.|.+|.++||++.+
T Consensus 177 ar~iNHSC~PN~~~~~~~~~~i~v~A~rdI~~GEElt~ 214 (247)
T 3rq4_A 177 AAFINHDCKPNCKFVPADGNAACVKVLRDIEPGDEVTC 214 (247)
T ss_dssp GGGCEECSSCSEEEEEETTTEEEEEESSCBCTTCBCEE
T ss_pred hhhcCCCCCCCEEEEEeCCCEEEEEECCcCCCCCEEEE
Confidence 568899986544332223 7888899999999999864
No 12
>3c2q_A Uncharacterized conserved protein; putative LOR/SDH, structural genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis S2}
Probab=34.40 E-value=13 Score=29.16 Aligned_cols=19 Identities=11% Similarity=-0.041 Sum_probs=17.7
Q ss_pred cceeeecccCCCCCCcchh
Q psy5299 41 NRSLLLSPHNAPMAIPVVV 59 (75)
Q Consensus 41 ~r~ec~A~~d~~~~~~v~~ 59 (75)
.+.+|.-++|+|||++|||
T Consensus 61 ~~~~~~~~r~lk~GD~VVv 79 (345)
T 3c2q_A 61 KRAETKVIRKVKKGDFVLI 79 (345)
T ss_dssp TEEEEECGGGCCTTCEEEE
T ss_pred CeEEEEEccccccCCEEEE
Confidence 6789999999999999996
No 13
>3f9x_A Histone-lysine N-methyltransferase SETD8; methyltransferase, SET, lysine, alternative splicing, cell cycle, cell division, chromatin regulator, chromosomal protein, coiled coil; HET: MLY SAH; 1.25A {Homo sapiens} PDB: 3f9w_A* 3f9y_A* 3f9z_A* 1zkk_A* 4ij8_A* 2bqz_A*
Probab=30.66 E-value=17 Score=23.02 Aligned_cols=35 Identities=9% Similarity=0.200 Sum_probs=23.2
Q ss_pred ccCCCCCCC---Ccccccc-cceeeecccCCCCCCcchh
Q psy5299 25 MCNHENGRS---EPKEKTR-NRSLLLSPHNAPMAIPVVV 59 (75)
Q Consensus 25 M~NH~~G~i---tT~yd~~-~r~ec~A~~d~~~~~~v~~ 59 (75)
++||+.-+= ...+... .+..-.|.+|.++||.+.+
T Consensus 110 fiNHSC~PN~~~~~~~~~~~~~i~~~A~rdI~~GEELt~ 148 (166)
T 3f9x_A 110 LINHSKCGNCQTKLHDIDGVPHLILIASRDIAAGEELLF 148 (166)
T ss_dssp GCEECTTCSEEEEEEEETTEEEEEEEESSCBCTTCBCEE
T ss_pred eeecCCCCCeeEEEEEECCeeEEEEEECCcCCCCCEEEE
Confidence 468887442 1112222 5777899999999998764
Done!