RPS-BLAST 2.2.26 [Sep-21-2011]

Database: CDD.v3.10 
           44,354 sequences; 10,937,602 total letters

Searching..................................................done

Query= psy5299
         (75 letters)



>gnl|CDD|235771 PRK06289, PRK06289, acetyl-CoA acetyltransferase; Provisional.
          Length = 403

 Score = 25.4 bits (56), Expect = 2.6
 Identities = 17/51 (33%), Positives = 22/51 (43%), Gaps = 10/51 (19%)

Query: 27  NHENGRSEPKEKTRNRSLLLSPHNAPMA----IPVVVPILRRLILQDCAEI 73
           N  N R  P  +TR  +    P  A        PVV   LRR   QDC+++
Sbjct: 178 NFANARRNPNAQTRGWAF---PDEATNDDDATNPVVEGRLRR---QDCSQV 222


>gnl|CDD|204097 pfam08926, DUF1908, Domain of unknown function (DUF1908).  This
           domain is found in a set of hypothetical/structural
           eukaryotic proteins.
          Length = 282

 Score = 25.2 bits (55), Expect = 3.4
 Identities = 16/53 (30%), Positives = 26/53 (49%), Gaps = 5/53 (9%)

Query: 3   RLNAVPSVNEDSEVHALIPVW---DMCNHENGRSEPKEKTRNRSLLLSPHNAP 52
           RL+ +P      ++H L   +   +    E+GR  P  + R+RS  LSP  +P
Sbjct: 62  RLHQLPFQPTQDDLHFLSKHFRSTESVTDEDGRRSPHFRPRSRS--LSPGRSP 112


>gnl|CDD|239975 cd04602, CBS_pair_IMPDH_2, This cd contains two tandem repeats of
           the cystathionine beta-synthase (CBS pair) domains in
           the inosine 5' monophosphate dehydrogenase (IMPDH)
           protein.  IMPDH is an essential enzyme that catalyzes
           the first step unique to GTP synthesis, playing a key
           role in the regulation of cell proliferation and
           differentiation. CBS is a small domain originally
           identified in cystathionine beta-synthase and
           subsequently found in a wide range of different
           proteins. CBS domains usually come in tandem repeats,
           which associate to form a so-called Bateman domain or a
           CBS pair which is reflected in this model. The interface
           between the two CBS domains forms a cleft that is a
           potential ligand binding site. The CBS pair coexists
           with a variety of other functional domains. It has been
           proposed that the CBS domain may play a regulatory role,
           although its exact function is unknown. Mutations of
           conserved residues within this domain in IMPDH have been
           associated with retinitis pigmentosa.
          Length = 114

 Score = 24.1 bits (53), Expect = 7.6
 Identities = 7/18 (38%), Positives = 12/18 (66%)

Query: 3   RLNAVPSVNEDSEVHALI 20
           +   +P VN+D E+ AL+
Sbjct: 89  KKGKLPIVNDDGELVALV 106


  Database: CDD.v3.10
    Posted date:  Mar 20, 2013  7:55 AM
  Number of letters in database: 10,937,602
  Number of sequences in database:  44,354
  
Lambda     K      H
   0.320    0.134    0.408 

Gapped
Lambda     K      H
   0.267   0.0612    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 3,736,898
Number of extensions: 268307
Number of successful extensions: 194
Number of sequences better than 10.0: 1
Number of HSP's gapped: 194
Number of HSP's successfully gapped: 4
Length of query: 75
Length of database: 10,937,602
Length adjustment: 45
Effective length of query: 30
Effective length of database: 8,941,672
Effective search space: 268250160
Effective search space used: 268250160
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 53 (24.4 bits)