RPS-BLAST 2.2.26 [Sep-21-2011]

Database: pdb70 
           27,921 sequences; 6,701,793 total letters

Searching..................................................done

Query= psy5299
         (75 letters)



>3smt_A Histone-lysine N-methyltransferase SETD3; histone
           methyltransferase, histone modification, LYSI
           translational modification, structural genomics; HET:
           SAM; 2.04A {Homo sapiens}
          Length = 497

 Score = 32.5 bits (73), Expect = 0.005
 Identities = 17/31 (54%), Positives = 21/31 (67%)

Query: 1   MTRLNAVPSVNEDSEVHALIPVWDMCNHENG 31
           MTR N +P+ +      ALIP+WDMCNH NG
Sbjct: 251 MTRQNQIPTEDGSRVTLALIPLWDMCNHTNG 281


>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
          photosynthetic reaction center, peripheral antenna;
          HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
          Length = 154

 Score = 29.9 bits (66), Expect = 0.039
 Identities = 9/29 (31%), Positives = 14/29 (48%), Gaps = 3/29 (10%)

Query: 34 EPKE-KTRNRSL-LLSPHNAP-MAIPVVV 59
          E +  K    SL L +  +AP +AI   +
Sbjct: 18 EKQALKKLQASLKLYADDSAPALAIKATM 46


>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
           acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
           synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
          Length = 2006

 Score = 27.3 bits (60), Expect = 0.38
 Identities = 9/53 (16%), Positives = 19/53 (35%), Gaps = 10/53 (18%)

Query: 6   AVPSVNEDSEVHAL--------IPVWDMCNHENGRSEPKEKTRN--RSLLLSP 48
           A   +N+D   + +        IPV+D  +  + R      +      ++  P
Sbjct: 435 ASDLINKDLVKNNVSFNAKDIQIPVYDTFDGSDLRVLSGSISERIVDCIIRLP 487


  Database: pdb70
    Posted date:  Sep 4, 2012  3:40 AM
  Number of letters in database: 6,701,793
  Number of sequences in database:  27,921
  
Lambda     K      H
   0.320    0.134    0.408 

Gapped
Lambda     K      H
   0.267   0.0479    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,091,708
Number of extensions: 46414
Number of successful extensions: 49
Number of sequences better than 10.0: 1
Number of HSP's gapped: 49
Number of HSP's successfully gapped: 4
Length of query: 75
Length of database: 6,701,793
Length adjustment: 44
Effective length of query: 31
Effective length of database: 5,473,269
Effective search space: 169671339
Effective search space used: 169671339
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 51 (24.0 bits)