BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy53
(78 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q5R9G4|XPO7_PONAB Exportin-7 OS=Pongo abelii GN=XPO7 PE=2 SV=3
Length = 1087
Score = 93.2 bits (230), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 47/75 (62%), Positives = 56/75 (74%), Gaps = 2/75 (2%)
Query: 4 YFNQLRENIVRGQPPDKQASMVQWFENLMNSIERNLLTKNRDRFTQNLSMFRRDINDSLK 63
YF+ LR +IV QPP+KQ +M FENLM IERNLLTKNRDRFTQNLS FRR++NDS+K
Sbjct: 1015 YFSDLRNSIVNSQPPEKQQAMHLCFENLMEGIERNLLTKNRDRFTQNLSAFRREVNDSMK 1074
Query: 64 GPNMNSSCTANDMMT 78
N +NDMM+
Sbjct: 1075 --NSTYGVNSNDMMS 1087
>sp|Q9EPK7|XPO7_MOUSE Exportin-7 OS=Mus musculus GN=Xpo7 PE=2 SV=3
Length = 1087
Score = 93.2 bits (230), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 47/75 (62%), Positives = 56/75 (74%), Gaps = 2/75 (2%)
Query: 4 YFNQLRENIVRGQPPDKQASMVQWFENLMNSIERNLLTKNRDRFTQNLSMFRRDINDSLK 63
YF+ LR +IV QPP+KQ +M FENLM IERNLLTKNRDRFTQNLS FRR++NDS+K
Sbjct: 1015 YFSDLRNSIVNSQPPEKQQAMHLCFENLMEGIERNLLTKNRDRFTQNLSAFRREVNDSMK 1074
Query: 64 GPNMNSSCTANDMMT 78
N +NDMM+
Sbjct: 1075 --NSTYGVNSNDMMS 1087
>sp|Q9UIA9|XPO7_HUMAN Exportin-7 OS=Homo sapiens GN=XPO7 PE=1 SV=3
Length = 1087
Score = 93.2 bits (230), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 47/75 (62%), Positives = 56/75 (74%), Gaps = 2/75 (2%)
Query: 4 YFNQLRENIVRGQPPDKQASMVQWFENLMNSIERNLLTKNRDRFTQNLSMFRRDINDSLK 63
YF+ LR +IV QPP+KQ +M FENLM IERNLLTKNRDRFTQNLS FRR++NDS+K
Sbjct: 1015 YFSDLRNSIVNSQPPEKQQAMHLCFENLMEGIERNLLTKNRDRFTQNLSAFRREVNDSMK 1074
Query: 64 GPNMNSSCTANDMMT 78
N +NDMM+
Sbjct: 1075 --NSTYGVNSNDMMS 1087
>sp|Q704U0|XPO7A_XENLA Exportin-7-A OS=Xenopus laevis GN=xpo7-a PE=1 SV=1
Length = 1087
Score = 92.8 bits (229), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 48/77 (62%), Positives = 58/77 (75%), Gaps = 6/77 (7%)
Query: 4 YFNQLRENIVRGQPPDKQASMVQWFENLMNSIERNLLTKNRDRFTQNLSMFRRDINDSLK 63
YF+ LR +IV QPP+KQ +M FENLM IE NLLTKNRDRFTQNLS FRR++NDS+K
Sbjct: 1015 YFSDLRSSIVSSQPPEKQQAMHLCFENLMEGIEGNLLTKNRDRFTQNLSAFRREVNDSMK 1074
Query: 64 GPNMNSSCT--ANDMMT 78
NSSC +N+MM+
Sbjct: 1075 ----NSSCGPNSNEMMS 1087
>sp|Q569Z2|XPO7B_XENLA Exportin-7-B OS=Xenopus laevis GN=xpo7-b PE=2 SV=1
Length = 1087
Score = 92.8 bits (229), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 48/77 (62%), Positives = 58/77 (75%), Gaps = 6/77 (7%)
Query: 4 YFNQLRENIVRGQPPDKQASMVQWFENLMNSIERNLLTKNRDRFTQNLSMFRRDINDSLK 63
YF+ LR +IV QPP+KQ +M FENLM IE NLLTKNRDRFTQNLS FRR++NDS+K
Sbjct: 1015 YFSDLRSSIVSSQPPEKQQAMHLCFENLMEGIEGNLLTKNRDRFTQNLSAFRREVNDSMK 1074
Query: 64 GPNMNSSCT--ANDMMT 78
NSSC +N+MM+
Sbjct: 1075 ----NSSCGPNSNEMMS 1087
>sp|Q5ZLT0|XPO7_CHICK Exportin-7 OS=Gallus gallus GN=XPO7 PE=2 SV=1
Length = 1087
Score = 92.4 bits (228), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 47/75 (62%), Positives = 56/75 (74%), Gaps = 2/75 (2%)
Query: 4 YFNQLRENIVRGQPPDKQASMVQWFENLMNSIERNLLTKNRDRFTQNLSMFRRDINDSLK 63
YF+ LR +IV QPP+KQ +M FENLM IERNLLTKNRDRFTQNLS FRR++NDS+K
Sbjct: 1015 YFSDLRNSIVNSQPPEKQQAMHLCFENLMEGIERNLLTKNRDRFTQNLSAFRREVNDSMK 1074
Query: 64 GPNMNSSCTANDMMT 78
N +NDMM+
Sbjct: 1075 --NSPYGVNSNDMMS 1087
>sp|Q9H2T7|RBP17_HUMAN Ran-binding protein 17 OS=Homo sapiens GN=RANBP17 PE=2 SV=1
Length = 1088
Score = 77.0 bits (188), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 36/75 (48%), Positives = 51/75 (68%), Gaps = 1/75 (1%)
Query: 4 YFNQLRENIVRGQPPDKQASMVQWFENLMNSIERNLLTKNRDRFTQNLSMFRRDINDSLK 63
YF++LR +++ QP KQ + Q F NLM +E+NL KNRDRFTQNLS+FRRD+ ++L+
Sbjct: 1015 YFSELRASLINSQPLPKQEVLAQCFRNLMEGVEQNLSVKNRDRFTQNLSVFRRDVAEALR 1074
Query: 64 GPNMNSSCTANDMMT 78
C+ DMM+
Sbjct: 1075 SDGNTEPCSL-DMMS 1088
>sp|Q99NF8|RBP17_MOUSE Ran-binding protein 17 OS=Mus musculus GN=Ranbp17 PE=2 SV=1
Length = 1088
Score = 75.5 bits (184), Expect = 1e-13, Method: Composition-based stats.
Identities = 35/75 (46%), Positives = 54/75 (72%), Gaps = 1/75 (1%)
Query: 4 YFNQLRENIVRGQPPDKQASMVQWFENLMNSIERNLLTKNRDRFTQNLSMFRRDINDSLK 63
YF++LR +++ QP KQ + Q F NLM +E+NL KNRDRFTQNLS+FRRD+ ++L+
Sbjct: 1015 YFSELRASLINSQPLPKQEVLGQCFRNLMEGVEQNLSVKNRDRFTQNLSVFRRDVAEALR 1074
Query: 64 GPNMNSSCTANDMMT 78
+ ++ ++ DMM+
Sbjct: 1075 S-DGHTDLSSLDMMS 1088
>sp|Q9GQN0|RBP16_DROME Ran-binding protein 16 OS=Drosophila melanogaster GN=Ranbp16 PE=2
SV=1
Length = 1098
Score = 70.5 bits (171), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 28/55 (50%), Positives = 43/55 (78%)
Query: 4 YFNQLRENIVRGQPPDKQASMVQWFENLMNSIERNLLTKNRDRFTQNLSMFRRDI 58
Y+ L++ I+ QP +KQ +M QWF++LM IERN+ +KN+++FTQN+S FRRD+
Sbjct: 1013 YYRSLKDRIICAQPIEKQQTMAQWFDDLMVGIERNVSSKNKEKFTQNMSTFRRDV 1067
>sp|Q54DN3|XPO7_DICDI Exportin-7 OS=Dictyostelium discoideum GN=xpo7 PE=3 SV=2
Length = 1007
Score = 37.7 bits (86), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 20/58 (34%), Positives = 37/58 (63%), Gaps = 8/58 (13%)
Query: 5 FNQLRENIVRG---QPPDK-QASMVQWFENLMNSIERNLLTKNRDRFTQNLSMFRRDI 58
F L++ + Q P+K + + VQ EN ++++E TKN+D+FT N+S+FR+++
Sbjct: 943 FTTLKQKYIHSFNSQCPEKVEKAFVQLMENTLDNLE----TKNKDKFTSNVSIFRKEM 996
>sp|P0CA04|PP220_ASFWA Polyprotein pp220 OS=African swine fever virus (isolate
Warthog/Namibia/Wart80/1980) GN=War-102 PE=3 SV=1
Length = 2475
Score = 30.4 bits (67), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 20/72 (27%), Positives = 33/72 (45%), Gaps = 6/72 (8%)
Query: 1 MDIYFNQLRENIVRGQPPDKQASMVQWFENLMNSIERNLLTKNRDRFTQNLSMFRRDIND 60
M IY NQ IVR + + L N I+RN + + F L RR++N+
Sbjct: 2154 MSIYINQALHEIVR------TIRLAETVRGLRNVIDRNQIIGELNAFRTQLEDTRREVNN 2207
Query: 61 SLKGPNMNSSCT 72
++ P + ++ T
Sbjct: 2208 LIQTPEIQNNPT 2219
>sp|P0CA03|PP220_ASFP4 Polyprotein pp220 OS=African swine fever virus (isolate Tick/South
Africa/Pretoriuskop Pr4/1996) GN=Pret-104 PE=3 SV=1
Length = 2475
Score = 30.0 bits (66), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 20/72 (27%), Positives = 33/72 (45%), Gaps = 6/72 (8%)
Query: 1 MDIYFNQLRENIVRGQPPDKQASMVQWFENLMNSIERNLLTKNRDRFTQNLSMFRRDIND 60
M IY NQ IVR + + L N I+RN + + F L RR++N+
Sbjct: 2154 MSIYINQALHEIVR------TIRLAETVRGLRNVIDRNQIIGELNAFRTQLEDTRREVNN 2207
Query: 61 SLKGPNMNSSCT 72
++ P + ++ T
Sbjct: 2208 LIQTPEIRNNPT 2219
>sp|O30601|YOSP_BACSU SPBc2 prophage-derived ribonucleoside-diphosphate reductase subunit
beta OS=Bacillus subtilis (strain 168) GN=yosP PE=3 SV=1
Length = 329
Score = 30.0 bits (66), Expect = 4.7, Method: Composition-based stats.
Identities = 14/47 (29%), Positives = 21/47 (44%)
Query: 3 IYFNQLRENIVRGQPPDKQASMVQWFENLMNSIERNLLTKNRDRFTQ 49
+Y L + I + Q P KQ + W NL+ + N L D + Q
Sbjct: 203 VYVGLLAQEIYKKQTPQKQKELYAWALNLLQELYENELEYTEDVYDQ 249
>sp|O64174|BNRDF_BPSPB Ribonucleoside-diphosphate reductase subunit beta OS=Bacillus phage
SPbeta GN=bnrdF PE=2 SV=1
Length = 329
Score = 30.0 bits (66), Expect = 4.7, Method: Composition-based stats.
Identities = 14/47 (29%), Positives = 21/47 (44%)
Query: 3 IYFNQLRENIVRGQPPDKQASMVQWFENLMNSIERNLLTKNRDRFTQ 49
+Y L + I + Q P KQ + W NL+ + N L D + Q
Sbjct: 203 VYVGLLAQEIYKKQTPQKQKELYAWALNLLQELYENELEYTEDVYDQ 249
>sp|P17743|T2C2_HAEIF Type-2 restriction enzyme HincII OS=Haemophilus influenzae
GN=hincIIR PE=1 SV=3
Length = 258
Score = 28.9 bits (63), Expect = 9.3, Method: Composition-based stats.
Identities = 19/57 (33%), Positives = 30/57 (52%), Gaps = 2/57 (3%)
Query: 14 RGQPPDKQASMVQWFENLMNSIERNLLTKNRDRFTQNLSMFRRDINDSLKGPNMNSS 70
RG+ + S+ FE N LL K D+F + L + RR+I+ S + PN+ S+
Sbjct: 91 RGKAATENWSIENLFEEKQNDTADILLVK--DQFYELLDVKRRNISKSAQAPNIISA 145
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.319 0.131 0.382
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 26,118,499
Number of Sequences: 539616
Number of extensions: 753436
Number of successful extensions: 1876
Number of sequences better than 100.0: 17
Number of HSP's better than 100.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 1863
Number of HSP's gapped (non-prelim): 18
length of query: 78
length of database: 191,569,459
effective HSP length: 49
effective length of query: 29
effective length of database: 165,128,275
effective search space: 4788719975
effective search space used: 4788719975
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (25.8 bits)