Query psy53
Match_columns 78
No_of_seqs 75 out of 77
Neff 4.0
Searched_HMMs 29240
Date Fri Aug 16 23:00:24 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy53.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/53hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2x19_B Importin-13; nuclear tr 74.1 0.51 1.7E-05 37.3 -0.6 35 20-54 896-933 (963)
2 3rfy_A Peptidyl-prolyl CIS-tra 71.7 6.6 0.00022 30.3 5.1 53 4-56 85-140 (369)
3 2juw_A UPF0352 protein SO_2176 67.8 11 0.00037 23.8 4.6 36 6-41 38-75 (80)
4 3do9_A UPF0302 protein BA_1542 67.4 2.3 7.8E-05 30.0 1.6 27 23-49 146-172 (188)
5 2bec_B Sodium/hydrogen exchang 64.1 6.3 0.00022 21.7 2.7 16 22-37 19-34 (43)
6 1rrz_A Glycogen synthesis prot 49.4 13 0.00045 23.7 2.7 29 32-60 50-78 (86)
7 3vjf_A WA20; protein design, d 48.6 22 0.00074 22.9 3.7 43 1-43 37-79 (102)
8 2kyg_A CAMP-dependent protein 46.2 26 0.00089 19.3 3.4 31 3-33 17-47 (50)
9 2izy_A CAMP-dependent protein 44.5 35 0.0012 19.2 3.8 31 3-33 12-42 (54)
10 2izx_A CAMP-dependent protein 44.2 33 0.0011 17.8 3.7 31 3-33 9-39 (41)
11 3mfq_A TROA, high-affinity zin 41.5 20 0.00068 25.5 3.0 24 38-61 125-148 (282)
12 2prs_A High-affinity zinc upta 38.6 22 0.00075 25.1 2.8 23 39-61 139-161 (284)
13 3cx3_A Lipoprotein; zinc-bindi 37.9 23 0.00078 25.1 2.8 23 39-61 142-164 (284)
14 2jr2_A UPF0352 protein CPS_261 37.0 48 0.0016 20.6 3.8 31 6-36 38-69 (76)
15 3ujp_A Mn transporter subunit; 36.7 24 0.00082 25.7 2.8 23 39-61 153-175 (307)
16 3hh8_A Metal ABC transporter s 35.7 26 0.00088 25.2 2.8 24 38-61 145-168 (294)
17 3qf7_D MRE11; ABC-ATPase, ATPa 35.6 51 0.0018 18.8 3.5 34 3-38 8-41 (50)
18 1pq4_A Periplasmic binding pro 35.5 26 0.00089 25.0 2.8 40 18-61 138-177 (291)
19 3oiq_B DNA polymerase alpha ca 35.3 37 0.0013 18.4 2.7 20 21-40 9-28 (36)
20 3gi1_A LBP, laminin-binding pr 35.2 27 0.00091 24.9 2.8 23 39-61 144-166 (286)
21 3bgh_A Protein HPAA, putative 34.8 58 0.002 24.0 4.6 34 21-61 191-224 (236)
22 2juz_A UPF0352 protein HI0840; 33.9 87 0.003 19.6 4.7 35 6-40 38-74 (80)
23 2xus_A Breast cancer metastasi 33.8 43 0.0015 19.1 3.0 28 1-32 18-45 (49)
24 2o1e_A YCDH; alpha-beta protei 33.5 83 0.0028 22.6 5.2 23 39-61 155-177 (312)
25 1toa_A Tromp-1, protein (perip 31.9 32 0.0011 24.9 2.8 23 39-61 160-182 (313)
26 1xvl_A Mn transporter, MNTC pr 30.3 35 0.0012 24.8 2.8 40 18-61 150-189 (321)
27 2gsv_A Hypothetical protein YV 30.2 1E+02 0.0034 19.1 5.4 42 4-45 10-51 (80)
28 3g13_A Putative conjugative tr 29.7 49 0.0017 21.0 3.2 37 26-62 62-102 (169)
29 1se7_A HOT, homologue of the t 29.2 78 0.0027 19.7 3.9 36 32-67 38-73 (83)
30 4aik_A Transcriptional regulat 28.9 83 0.0029 19.6 4.1 33 4-36 106-138 (151)
31 3bvp_A INT, TP901-1 integrase; 26.8 58 0.002 20.1 3.1 38 26-63 58-99 (138)
32 2fa5_A Transcriptional regulat 26.5 97 0.0033 18.7 4.0 29 9-37 128-156 (162)
33 3s2w_A Transcriptional regulat 25.5 1.2E+02 0.004 18.4 4.3 32 27-58 124-155 (159)
34 1h2v_C 80 kDa nuclear CAP bind 24.0 1.8E+02 0.006 24.1 6.1 53 2-58 350-402 (771)
35 1lj9_A Transcriptional regulat 23.8 1.2E+02 0.0041 17.8 4.0 26 10-35 109-134 (144)
36 3m1i_C Exportin-1; heat repeat 23.5 2.7E+02 0.0093 22.6 7.0 44 19-62 951-1001(1049)
37 3vlc_E Golgi to ER traffic pro 23.5 1.5E+02 0.0051 18.9 4.6 51 5-55 39-94 (94)
38 3bpj_A Eukaryotic translation 23.2 1.1E+02 0.0037 18.4 3.7 55 3-57 14-69 (80)
39 2fbh_A Transcriptional regulat 23.1 1.2E+02 0.0042 17.7 4.1 31 26-56 111-141 (146)
40 4f9k_A CAMP-dependent protein 23.1 65 0.0022 20.7 2.7 40 4-43 52-91 (95)
41 3cjn_A Transcriptional regulat 22.5 1.1E+02 0.0039 18.5 3.8 26 30-55 129-154 (162)
42 3bja_A Transcriptional regulat 22.1 1.3E+02 0.0043 17.5 3.8 29 27-55 107-135 (139)
43 2a61_A Transcriptional regulat 21.8 1.3E+02 0.0045 17.6 3.9 33 29-61 109-141 (145)
44 2eth_A Transcriptional regulat 21.7 1.4E+02 0.0048 18.0 4.1 28 31-58 122-149 (154)
45 2dnx_A Syntaxin-12; snare, HAB 21.6 94 0.0032 19.9 3.3 29 28-61 12-40 (130)
46 2bez_C E2 glycoprotein; coiled 21.5 54 0.0018 20.4 2.0 24 18-41 4-27 (77)
47 3nrv_A Putative transcriptiona 21.5 1.2E+02 0.0041 18.0 3.6 31 28-58 115-145 (148)
48 3e6m_A MARR family transcripti 21.3 1.3E+02 0.0045 18.3 3.9 28 8-35 131-158 (161)
49 3oop_A LIN2960 protein; protei 20.9 1.2E+02 0.0042 17.9 3.6 24 29-52 113-136 (143)
50 3deu_A Transcriptional regulat 20.5 1.6E+02 0.0056 18.2 4.3 37 24-60 125-161 (166)
51 3lhk_A Putative DNA binding pr 20.2 44 0.0015 21.6 1.5 29 27-55 54-86 (154)
No 1
>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B
Probab=74.06 E-value=0.51 Score=37.31 Aligned_cols=35 Identities=14% Similarity=0.320 Sum_probs=27.3
Q ss_pred hHHHHHHHHHHHHH--Hh-hhhcccchhhhhhhhHHHH
Q psy53 20 KQASMVQWFENLMN--SI-ERNLLTKNRDRFTQNLSMF 54 (78)
Q Consensus 20 kq~~l~~~F~~LM~--gI-e~nL~~kNRDrFTQNLs~F 54 (78)
.++.+.+|+.+++. ++ ..++++++|++|+++|..+
T Consensus 896 ~~~~~~~~l~~~l~~~~~p~~~~~~~~~~~f~~~l~~~ 933 (963)
T 2x19_B 896 CFSLLSMWIKEALQPPGFPSARLSPEQKDTFSQQILRE 933 (963)
T ss_dssp SHHHHHHHHHHHTCSTTSSCTTCCHHHHHHHHHHHTCS
T ss_pred ChHHHHHHHHHHhcccCCCCCcCCHHHHHHHHHHHHHH
Confidence 35678888988885 44 5589999999999998433
No 2
>3rfy_A Peptidyl-prolyl CIS-trans isomerase CYP38, chloro; cyclophilin, peptidyl prolyl isomerase, ppiase, TLP,; 2.39A {Arabidopsis thaliana}
Probab=71.69 E-value=6.6 Score=30.29 Aligned_cols=53 Identities=17% Similarity=0.201 Sum_probs=42.4
Q ss_pred HHHHHHHHHhhcCCchhHHHHHHHHHHHHHHhh---hhcccchhhhhhhhHHHHHH
Q psy53 4 YFNQLRENIVRGQPPDKQASMVQWFENLMNSIE---RNLLTKNRDRFTQNLSMFRR 56 (78)
Q Consensus 4 ~f~~lk~~li~sQp~ekq~~l~~~F~~LM~gIe---~nL~~kNRDrFTQNLs~FRr 56 (78)
..+.-|..|+++-|++++..-.++++.|-.+++ .-...|+||+|......--.
T Consensus 85 ~~~~~~~~il~~v~~~~~~~~~~~~~~l~~~l~~l~~~~~~~d~~~~~~~~~~~l~ 140 (369)
T 3rfy_A 85 TLQQGKSIIVAGFAESKKDHGNEMIEKLEAGMQDMLKIVEDRKRDAVAPKQKEILK 140 (369)
T ss_dssp HHSCHHHHHTTTCCGGGHHHHHHHHHHHHHHHHHHHCCCSSCCCSSSGGGHHHHHH
T ss_pred HHhhCHHHHHhhcChhhHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHH
Confidence 345568899999999999999999999977765 45668999999877654433
No 3
>2juw_A UPF0352 protein SO_2176; homodimer, helix, dimer, all alpha, northeast structural GEN consortium, NESG, structural genomics; NMR {Shewanella oneidensis} SCOP: a.284.1.1 PDB: 2qti_A
Probab=67.82 E-value=11 Score=23.83 Aligned_cols=36 Identities=17% Similarity=0.341 Sum_probs=27.4
Q ss_pred HHHHHHHhh-cCCchhHHHHHHHHH-HHHHHhhhhccc
Q psy53 6 NQLRENIVR-GQPPDKQASMVQWFE-NLMNSIERNLLT 41 (78)
Q Consensus 6 ~~lk~~li~-sQp~ekq~~l~~~F~-~LM~gIe~nL~~ 41 (78)
.++=-.||+ +-||++|+.+++.|. .|+..|..||+.
T Consensus 38 GN~vTnlln~~V~~~qR~~iAe~Fa~AL~~Svk~~~~~ 75 (80)
T 2juw_A 38 GNCVTHLLERKVPSESRQAVAEQFAKALAQSVKSNLEH 75 (80)
T ss_dssp HHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHHHHHCG
T ss_pred HHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 344456666 456899999999996 588999999874
No 4
>3do9_A UPF0302 protein BA_1542/GBAA1542/BAS1430; uncharacterized protein, structural genomics, protein structure initiative, PSI; 2.75A {Bacillus anthracis}
Probab=67.38 E-value=2.3 Score=30.00 Aligned_cols=27 Identities=19% Similarity=0.341 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHHhhhhcccchhhhhhh
Q psy53 23 SMVQWFENLMNSIERNLLTKNRDRFTQ 49 (78)
Q Consensus 23 ~l~~~F~~LM~gIe~nL~~kNRDrFTQ 49 (78)
....--++||..|+..|..+||++|.+
T Consensus 146 ~~~~~~~~L~~~ID~ALd~~D~e~F~~ 172 (188)
T 3do9_A 146 VFSFRRERLLKQIDEALDKQDKEAFHR 172 (188)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 344456789999999999999999976
No 5
>2bec_B Sodium/hydrogen exchanger 1; calcineurin-homologous protein, calcium-binding protein, NHE1 regulating protein; 2.70A {Homo sapiens} PDB: 2e30_B
Probab=64.09 E-value=6.3 Score=21.67 Aligned_cols=16 Identities=25% Similarity=0.503 Sum_probs=13.1
Q ss_pred HHHHHHHHHHHHHhhh
Q psy53 22 ASMVQWFENLMNSIER 37 (78)
Q Consensus 22 ~~l~~~F~~LM~gIe~ 37 (78)
+.-...|+.||+|||.
T Consensus 19 ~ih~~~~dhlmaGiEd 34 (43)
T 2bec_B 19 EIHTQFLDHLLTGIED 34 (43)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHhhhhhhhhhhchHh
Confidence 4456679999999996
No 6
>1rrz_A Glycogen synthesis protein GLGS; all-helical domain, structural genomics, montreal-kingston bacterial structural genomics initiative, BSGI; NMR {Escherichia coli} SCOP: a.7.10.1
Probab=49.44 E-value=13 Score=23.70 Aligned_cols=29 Identities=10% Similarity=0.275 Sum_probs=25.3
Q ss_pred HHHhhhhcccchhhhhhhhHHHHHHHHHH
Q psy53 32 MNSIERNLLTKNRDRFTQNLSMFRRDIND 60 (78)
Q Consensus 32 M~gIe~nL~~kNRDrFTQNLs~FRrdvr~ 60 (78)
.+.|++|.....|+.|-+.|..+|...+.
T Consensus 50 ~d~Ve~e~pee~R~~FreRL~~YRq~~~~ 78 (86)
T 1rrz_A 50 ILAVTGNMDEEHRTWFCARYAWYCQQMMQ 78 (86)
T ss_dssp HHHHHHHCCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhcccCCHHHHHHHHHHHHHHHHHhch
Confidence 35799999999999999999999987653
No 7
>3vjf_A WA20; protein design, de novo protein, binary patterned design, FO bundle, rudimentary enzymatic activitie; 2.20A {Synthetic construct}
Probab=48.65 E-value=22 Score=22.88 Aligned_cols=43 Identities=19% Similarity=0.399 Sum_probs=37.5
Q ss_pred ChHHHHHHHHHHhhcCCchhHHHHHHHHHHHHHHhhhhcccch
Q psy53 1 MDIYFNQLRENIVRGQPPDKQASMVQWFENLMNSIERNLLTKN 43 (78)
Q Consensus 1 ~e~~f~~lk~~li~sQp~ekq~~l~~~F~~LM~gIe~nL~~kN 43 (78)
||+.|.+.+.-.-..|...|-+.|-.-....|..|+.-|.+..
T Consensus 37 meqlfqefqhfmqgnqddgklqnmihemqqfmnqvdnhlqses 79 (102)
T 3vjf_A 37 MEQLFQEFQHFMQGNQDDGKLQNMIHEMQQFMNQVDNHLQSES 79 (102)
T ss_dssp HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHHHHHhhccc
Confidence 6888999998888999999999999999999999998887654
No 8
>2kyg_A CAMP-dependent protein kinase type II-alpha regul subunit; protein/protein, homodimer bound to monomer, protein binding; NMR {Homo sapiens}
Probab=46.18 E-value=26 Score=19.27 Aligned_cols=31 Identities=26% Similarity=0.447 Sum_probs=26.2
Q ss_pred HHHHHHHHHHhhcCCchhHHHHHHHHHHHHH
Q psy53 3 IYFNQLRENIVRGQPPDKQASMVQWFENLMN 33 (78)
Q Consensus 3 ~~f~~lk~~li~sQp~ekq~~l~~~F~~LM~ 33 (78)
+....+-..++..||.+=-+-.+.+|++|-.
T Consensus 17 ~lL~~~~~evlr~qP~Di~~Faa~yF~~l~~ 47 (50)
T 2kyg_A 17 ELLQGYTVEVLRQQPPDLVEFAVEYFTRLRE 47 (50)
T ss_dssp HHHHHHHHHHHHHCCSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHH
Confidence 4566777889999999999999999998864
No 9
>2izy_A CAMP-dependent protein kinase regulatory subunit II; D/D, RII, PKA, acetylation, transferase, CAMP- binding, phosphorylation, nucleotide-binding; 2.2A {Mus musculus} SCOP: a.31.1.1 PDB: 1l6e_A 1r2a_A 2drn_A 2h9r_A
Probab=44.47 E-value=35 Score=19.24 Aligned_cols=31 Identities=26% Similarity=0.444 Sum_probs=26.8
Q ss_pred HHHHHHHHHHhhcCCchhHHHHHHHHHHHHH
Q psy53 3 IYFNQLRENIVRGQPPDKQASMVQWFENLMN 33 (78)
Q Consensus 3 ~~f~~lk~~li~sQp~ekq~~l~~~F~~LM~ 33 (78)
+....+-..++..||.+=-+-.+.+|++|-.
T Consensus 12 ~lL~~f~~evlr~qP~Di~~Faa~YF~~L~~ 42 (54)
T 2izy_A 12 ELLQGYTVEVLRQQPPDLVDFAVEYFTRLRE 42 (54)
T ss_dssp HHHHHHHHHHHHHCCSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHH
Confidence 4567777889999999999999999999876
No 10
>2izx_A CAMP-dependent protein kinase type II-alpha regulatory subunit; CAMP-binding, phosphorylation, nucleotide-binding, PKA, CAMP, anchor, kinase, acetylation; 1.3A {Homo sapiens} PDB: 2hwn_A
Probab=44.17 E-value=33 Score=17.75 Aligned_cols=31 Identities=26% Similarity=0.447 Sum_probs=26.1
Q ss_pred HHHHHHHHHHhhcCCchhHHHHHHHHHHHHH
Q psy53 3 IYFNQLRENIVRGQPPDKQASMVQWFENLMN 33 (78)
Q Consensus 3 ~~f~~lk~~li~sQp~ekq~~l~~~F~~LM~ 33 (78)
+....+-..++..||.+=-+-.+.+|++|-.
T Consensus 9 ~lL~~~~~~vl~~qP~di~~f~a~yF~~l~~ 39 (41)
T 2izx_A 9 ELLQGYTVEVLRQQPPDLVEFAVEYFTRLRE 39 (41)
T ss_dssp HHHHHHHHHHHHHCCSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCCHHHHHHHHHHHHhh
Confidence 4566777889999999999999999998864
No 11
>3mfq_A TROA, high-affinity zinc uptake system protein ZNUA; metal binding protein; 2.60A {Streptococcus suis} SCOP: c.92.2.0
Probab=41.53 E-value=20 Score=25.52 Aligned_cols=24 Identities=17% Similarity=0.390 Sum_probs=19.7
Q ss_pred hcccchhhhhhhhHHHHHHHHHHh
Q psy53 38 NLLTKNRDRFTQNLSMFRRDINDS 61 (78)
Q Consensus 38 nL~~kNRDrFTQNLs~FRrdvr~~ 61 (78)
-+.|.|++.|.+|...|..++..+
T Consensus 125 ~~dP~~a~~y~~N~~~~~~~L~~l 148 (282)
T 3mfq_A 125 KLLPAKAEMIQKNTEKYQAQLDDL 148 (282)
T ss_dssp TTCGGGHHHHHHHHHHHHHHHHHH
T ss_pred HhChhhHHHHHHHHHHHHHHHHHH
Confidence 367899999999999998877654
No 12
>2prs_A High-affinity zinc uptake system protein ZNUA; protein consists of two (beta/ALFA)4 domains, metal transport; 1.70A {Escherichia coli} PDB: 2osv_A 2ps0_A 2ps3_A 2ps9_A 2ogw_A 2xy4_A* 2xqv_A* 2xh8_A
Probab=38.58 E-value=22 Score=25.09 Aligned_cols=23 Identities=22% Similarity=0.512 Sum_probs=19.5
Q ss_pred cccchhhhhhhhHHHHHHHHHHh
Q psy53 39 LLTKNRDRFTQNLSMFRRDINDS 61 (78)
Q Consensus 39 L~~kNRDrFTQNLs~FRrdvr~~ 61 (78)
+.|.|++.|.+|...|..++..+
T Consensus 139 ~dP~~a~~y~~N~~~~~~~L~~L 161 (284)
T 2prs_A 139 LMPQSRAKLDANLKDFEAQLAST 161 (284)
T ss_dssp HCGGGHHHHHHHHHHHHHHHHHH
T ss_pred hCchhHHHHHHHHHHHHHHHHHH
Confidence 57899999999999999877654
No 13
>3cx3_A Lipoprotein; zinc-binding, transport, lipid binding protein, metal binding protein; 2.40A {Streptococcus pneumoniae}
Probab=37.95 E-value=23 Score=25.07 Aligned_cols=23 Identities=9% Similarity=0.348 Sum_probs=19.7
Q ss_pred cccchhhhhhhhHHHHHHHHHHh
Q psy53 39 LLTKNRDRFTQNLSMFRRDINDS 61 (78)
Q Consensus 39 L~~kNRDrFTQNLs~FRrdvr~~ 61 (78)
+.|.|++.|.+|...|..++..+
T Consensus 142 ~dP~~a~~y~~N~~~~~~~L~~L 164 (284)
T 3cx3_A 142 VDSEHKETYQKNAQAFIKKAQEL 164 (284)
T ss_dssp HSGGGHHHHHHHHHHHHHHHHHH
T ss_pred hCcccHHHHHHHHHHHHHHHHHH
Confidence 67899999999999999877654
No 14
>2jr2_A UPF0352 protein CPS_2611; dimer, all alpha helix, homodimer, structural genomics, PSI, structure initiative; NMR {Colwellia psychrerythraea} SCOP: a.284.1.1 PDB: 2ota_A
Probab=37.01 E-value=48 Score=20.64 Aligned_cols=31 Identities=26% Similarity=0.377 Sum_probs=23.3
Q ss_pred HHHHHHHhhcCCchhHHHHHHHHHH-HHHHhh
Q psy53 6 NQLRENIVRGQPPDKQASMVQWFEN-LMNSIE 36 (78)
Q Consensus 6 ~~lk~~li~sQp~ekq~~l~~~F~~-LM~gIe 36 (78)
.++=-.||++-||++|+.+++.|.+ |+..|.
T Consensus 38 GN~vTnlln~V~~~qR~~iAe~Fa~AL~~Sv~ 69 (76)
T 2jr2_A 38 GNAVTNIIAQVPESKRVAVVDNFTKALKQSVL 69 (76)
T ss_dssp HHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHH
Confidence 4555678888889999999999965 444443
No 15
>3ujp_A Mn transporter subunit; manganese binding protein, metal binding protein; 2.70A {Synechocystis SP} PDB: 1xvl_A 3v63_A
Probab=36.68 E-value=24 Score=25.70 Aligned_cols=23 Identities=13% Similarity=0.304 Sum_probs=19.4
Q ss_pred cccchhhhhhhhHHHHHHHHHHh
Q psy53 39 LLTKNRDRFTQNLSMFRRDINDS 61 (78)
Q Consensus 39 L~~kNRDrFTQNLs~FRrdvr~~ 61 (78)
+.+.|++.|.+|...|..++..+
T Consensus 153 ~DP~~a~~Y~~Na~~~~~~L~~L 175 (307)
T 3ujp_A 153 LDPDNAKYYNANAAVYSEQLKAI 175 (307)
T ss_dssp HCGGGHHHHHHHHHHHHHHHHHH
T ss_pred hCchhHHHHHHHHHHHHHHHHHH
Confidence 67899999999999998877654
No 16
>3hh8_A Metal ABC transporter substrate-binding lipoprote; lipoprotein, metal binding, cell membrane, copper transport, iron; 1.87A {Streptococcus pyogenes serotype M1} SCOP: c.92.2.2 PDB: 1psz_A 3ztt_A
Probab=35.72 E-value=26 Score=25.16 Aligned_cols=24 Identities=17% Similarity=0.344 Sum_probs=20.2
Q ss_pred hcccchhhhhhhhHHHHHHHHHHh
Q psy53 38 NLLTKNRDRFTQNLSMFRRDINDS 61 (78)
Q Consensus 38 nL~~kNRDrFTQNLs~FRrdvr~~ 61 (78)
-+.+.|++.|.+|...|..++..+
T Consensus 145 ~~dP~~a~~y~~N~~~~~~~L~~L 168 (294)
T 3hh8_A 145 AKDPKNKETYEKNLKAYVAKLEKL 168 (294)
T ss_dssp HHCGGGHHHHHHHHHHHHHHHHHH
T ss_pred HhCccchHHHHHHHHHHHHHHHHH
Confidence 357899999999999999887665
No 17
>3qf7_D MRE11; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima}
Probab=35.60 E-value=51 Score=18.83 Aligned_cols=34 Identities=12% Similarity=0.505 Sum_probs=24.3
Q ss_pred HHHHHHHHHHhhcCCchhHHHHHHHHHHHHHHhhhh
Q psy53 3 IYFNQLRENIVRGQPPDKQASMVQWFENLMNSIERN 38 (78)
Q Consensus 3 ~~f~~lk~~li~sQp~ekq~~l~~~F~~LM~gIe~n 38 (78)
+||.-.|+-+-. -.+..+.+-..|+.|++.|-.+
T Consensus 8 d~felfkey~k~--r~~~he~l~k~~~ell~evkks 41 (50)
T 3qf7_D 8 DYFELFKEYLKK--REENHEKLLKILDELLDEVKKS 41 (50)
T ss_dssp CHHHHHHHHHHH--HCTTHHHHHHHHHHHHHHHHHC
T ss_pred hHHHHHHHHHHH--HHhhHHHHHHHHHHHHHHHHHh
Confidence 356555554433 3567889999999999998654
No 18
>1pq4_A Periplasmic binding protein component of AN ABC T uptake transporter; ZNUA, loop, metal-binding, metal binding protein; 1.90A {Synechocystis SP} SCOP: c.92.2.2 PDB: 2ov3_A 2ov1_A
Probab=35.53 E-value=26 Score=24.97 Aligned_cols=40 Identities=20% Similarity=0.312 Sum_probs=26.1
Q ss_pred chhHHHHHHHHHHHHHHhhhhcccchhhhhhhhHHHHHHHHHHh
Q psy53 18 PDKQASMVQWFENLMNSIERNLLTKNRDRFTQNLSMFRRDINDS 61 (78)
Q Consensus 18 ~ekq~~l~~~F~~LM~gIe~nL~~kNRDrFTQNLs~FRrdvr~~ 61 (78)
|..-..+.....+-+.. +.|.|++.|.+|...|..++..+
T Consensus 138 p~~~~~~a~~I~~~L~~----~dP~~a~~y~~N~~~~~~~L~~L 177 (291)
T 1pq4_A 138 PTLVKRQATTIAKELAE----LDPDNRDQYEANLAAFLAELERL 177 (291)
T ss_dssp HHHHHHHHHHHHHHHHH----HCGGGHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH----HCcccHHHHHHHHHHHHHHHHHH
Confidence 33344444444433333 57899999999999998877653
No 19
>3oiq_B DNA polymerase alpha catalytic subunit A; OB fold, dimer, dimeric complex, protein binding; HET: DNA; 2.40A {Saccharomyces cerevisiae}
Probab=35.29 E-value=37 Score=18.38 Aligned_cols=20 Identities=10% Similarity=0.275 Sum_probs=15.7
Q ss_pred HHHHHHHHHHHHHHhhhhcc
Q psy53 21 QASMVQWFENLMNSIERNLL 40 (78)
Q Consensus 21 q~~l~~~F~~LM~gIe~nL~ 40 (78)
...++.=.++||++||.+-.
T Consensus 9 K~R~~nDvq~Ll~DVENSP~ 28 (36)
T 3oiq_B 9 KLRYANDVQDLLDDVENSPV 28 (36)
T ss_dssp HHHHHHHHHHHHHHHHHSCS
T ss_pred HHHHHhhHHHHHHHhhcCch
Confidence 34677788999999998754
No 20
>3gi1_A LBP, laminin-binding protein of group A streptococci; zinc-binding receptor, metal-binding, helical backbone, alpha/beta domains; 2.45A {Streptococcus pyogenes} PDB: 3hjt_A
Probab=35.16 E-value=27 Score=24.91 Aligned_cols=23 Identities=26% Similarity=0.534 Sum_probs=19.3
Q ss_pred cccchhhhhhhhHHHHHHHHHHh
Q psy53 39 LLTKNRDRFTQNLSMFRRDINDS 61 (78)
Q Consensus 39 L~~kNRDrFTQNLs~FRrdvr~~ 61 (78)
+.+.|++.|.+|...|..++..+
T Consensus 144 ~dP~~a~~y~~N~~~~~~~L~~L 166 (286)
T 3gi1_A 144 LDPKHKDSYTKNAKAFKKEAEQL 166 (286)
T ss_dssp HCGGGHHHHHHHHHHHHHHHHHH
T ss_pred HChhhHHHHHHHHHHHHHHHHHH
Confidence 67899999999999998877554
No 21
>3bgh_A Protein HPAA, putative neuraminyllactose-binding hemagglutinin; structural genomics, unknown function, PSI-2, protein struct initiative; 2.45A {Helicobacter pylori}
Probab=34.77 E-value=58 Score=24.04 Aligned_cols=34 Identities=15% Similarity=0.297 Sum_probs=29.6
Q ss_pred HHHHHHHHHHHHHHhhhhcccchhhhhhhhHHHHHHHHHHh
Q psy53 21 QASMVQWFENLMNSIERNLLTKNRDRFTQNLSMFRRDINDS 61 (78)
Q Consensus 21 q~~l~~~F~~LM~gIe~nL~~kNRDrFTQNLs~FRrdvr~~ 61 (78)
...|.+.|.+.|.-|..-|+. +|+..||++|+++
T Consensus 191 ~~iLNkiYa~vMkki~~eLt~-------~ni~sY~~~i~el 224 (236)
T 3bgh_A 191 RKIMNQAYHKVMVHITKELSK-------KHMEHYEKVSSEM 224 (236)
T ss_dssp HHHHHHHHHHHHHHHHHHTCH-------HHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHH
Confidence 478999999999999999985 5788999999875
No 22
>2juz_A UPF0352 protein HI0840; homodimer, helix, structural genomics, PSI-2, protein structure initiative; NMR {Haemophilus influenzae} SCOP: a.284.1.1
Probab=33.91 E-value=87 Score=19.59 Aligned_cols=35 Identities=23% Similarity=0.462 Sum_probs=24.7
Q ss_pred HHHHHHHhhcC-CchhHHHHHHHHHH-HHHHhhhhcc
Q psy53 6 NQLRENIVRGQ-PPDKQASMVQWFEN-LMNSIERNLL 40 (78)
Q Consensus 6 ~~lk~~li~sQ-p~ekq~~l~~~F~~-LM~gIe~nL~ 40 (78)
.++=-.||+++ ||++|+.+++.|.+ |+..|..-|+
T Consensus 38 GN~vTnlln~~V~~~qR~~iAe~Fa~AL~~Svk~~~~ 74 (80)
T 2juz_A 38 GNMASNLLTTSVPQTQCEALAQAFSNSLINAVKTRLE 74 (80)
T ss_dssp HHHHHHHHTTSSCSTTHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455677744 58999999999965 6777766554
No 23
>2xus_A Breast cancer metastasis-suppressor 1; protein binding; 1.912A {Homo sapiens}
Probab=33.76 E-value=43 Score=19.13 Aligned_cols=28 Identities=18% Similarity=0.447 Sum_probs=16.6
Q ss_pred ChHHHHHHHHHHhhcCCchhHHHHHHHHHHHH
Q psy53 1 MDIYFNQLRENIVRGQPPDKQASMVQWFENLM 32 (78)
Q Consensus 1 ~e~~f~~lk~~li~sQp~ekq~~l~~~F~~LM 32 (78)
+|+.|+.||++|-. ||-..+..=.+.|.
T Consensus 18 LEkqF~~LkEqlY~----ERl~ql~~~Leel~ 45 (49)
T 2xus_A 18 LEKQFSELKEKLFR----ERLSQLRLRLEEVG 45 (49)
T ss_dssp HHHHHHHHHHHHHH----HHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHH----HHHHHHHHHHHHHH
Confidence 36778888888865 44444444344333
No 24
>2o1e_A YCDH; alpha-beta protein, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.60A {Bacillus subtilis}
Probab=33.54 E-value=83 Score=22.64 Aligned_cols=23 Identities=13% Similarity=0.254 Sum_probs=19.4
Q ss_pred cccchhhhhhhhHHHHHHHHHHh
Q psy53 39 LLTKNRDRFTQNLSMFRRDINDS 61 (78)
Q Consensus 39 L~~kNRDrFTQNLs~FRrdvr~~ 61 (78)
+.+.|++.|.+|...|..++..+
T Consensus 155 ~DP~~a~~Y~~N~~~~~~~L~~L 177 (312)
T 2o1e_A 155 QDPDNKEYYEKNSKEYIAKLQDL 177 (312)
T ss_dssp HCGGGHHHHHHHHHHHHHHHHHH
T ss_pred hCchhHHHHHHHHHHHHHHHHHH
Confidence 67899999999999998877654
No 25
>1toa_A Tromp-1, protein (periplasmic binding protein TROA); zinc binding protein, ABC trans binding protein; 1.80A {Treponema pallidum} SCOP: c.92.2.2 PDB: 1k0f_A
Probab=31.91 E-value=32 Score=24.93 Aligned_cols=23 Identities=22% Similarity=0.466 Sum_probs=19.3
Q ss_pred cccchhhhhhhhHHHHHHHHHHh
Q psy53 39 LLTKNRDRFTQNLSMFRRDINDS 61 (78)
Q Consensus 39 L~~kNRDrFTQNLs~FRrdvr~~ 61 (78)
+.|.|++.|.+|...|..++..+
T Consensus 160 ~DP~~a~~Y~~N~~~~~~~L~~L 182 (313)
T 1toa_A 160 LLPGKTREFTQRYQAYQQQLDKL 182 (313)
T ss_dssp HCGGGHHHHHHHHHHHHHHHHHH
T ss_pred HChhhHHHHHHHHHHHHHHHHHH
Confidence 57899999999999998877654
No 26
>1xvl_A Mn transporter, MNTC protein; manganese, ABC-type transport systems, photosynthesis, cyanobacteria, disulfide bond, metal transport; 2.90A {Synechocystis SP} SCOP: c.92.2.2
Probab=30.27 E-value=35 Score=24.85 Aligned_cols=40 Identities=13% Similarity=0.238 Sum_probs=25.9
Q ss_pred chhHHHHHHHHHHHHHHhhhhcccchhhhhhhhHHHHHHHHHHh
Q psy53 18 PDKQASMVQWFENLMNSIERNLLTKNRDRFTQNLSMFRRDINDS 61 (78)
Q Consensus 18 ~ekq~~l~~~F~~LM~gIe~nL~~kNRDrFTQNLs~FRrdvr~~ 61 (78)
|..-..+.....+-+.. +.+.|++.|.+|...|..++..+
T Consensus 150 p~n~~~~a~~I~~~L~~----~DP~~a~~Y~~Na~~~~~~L~~L 189 (321)
T 1xvl_A 150 PRNALVYVENIRQAFVE----LDPDNAKYYNANAAVYSEQLKAI 189 (321)
T ss_dssp HHHHHHHHHHHHHHHHH----HCGGGHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH----HCcccHHHHHHHHHHHHHHHHHH
Confidence 33334444444433333 57899999999999998776543
No 27
>2gsv_A Hypothetical protein YVFG; alpha-helical protein, structural genomics, PSI, protein structure initiative; 1.90A {Bacillus subtilis} SCOP: a.23.7.1 PDB: 2js1_A
Probab=30.17 E-value=1e+02 Score=19.15 Aligned_cols=42 Identities=24% Similarity=0.466 Sum_probs=33.8
Q ss_pred HHHHHHHHHhhcCCchhHHHHHHHHHHHHHHhhhhcccchhh
Q psy53 4 YFNQLRENIVRGQPPDKQASMVQWFENLMNSIERNLLTKNRD 45 (78)
Q Consensus 4 ~f~~lk~~li~sQp~ekq~~l~~~F~~LM~gIe~nL~~kNRD 45 (78)
+-+++|+.|-..|..+|-++|...+......+=..-.+||-|
T Consensus 10 fi~N~k~hi~mn~~edKIhAmNaYYrsVvstlvqDqltKNAv 51 (80)
T 2gsv_A 10 FIENLKQHIEMNQSEDKIHAMNSYYRSVVSTLVQDQLTKNAV 51 (80)
T ss_dssp HHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHHCSSSCHHH
T ss_pred HHHHHHHHHHhCccHhHHHHHHHHHHHHHHHHHHHHHHhhHH
Confidence 457899999999999999999999998877776555555544
No 28
>3g13_A Putative conjugative transposon recombinase; resolvase, PSI-II, target 11223F, structural genomics, prote structure initiative; 2.00A {Clostridium difficile}
Probab=29.75 E-value=49 Score=21.04 Aligned_cols=37 Identities=19% Similarity=0.219 Sum_probs=27.0
Q ss_pred HHHHHHHHHhhhh----cccchhhhhhhhHHHHHHHHHHhc
Q psy53 26 QWFENLMNSIERN----LLTKNRDRFTQNLSMFRRDINDSL 62 (78)
Q Consensus 26 ~~F~~LM~gIe~n----L~~kNRDrFTQNLs~FRrdvr~~l 62 (78)
--|..|++.|+.. |-...-|||..|...+-.-+..+.
T Consensus 62 p~l~~ll~~~~~g~id~vvv~~ldRl~R~~~~~~~~~~~l~ 102 (169)
T 3g13_A 62 EDFQRMINDCMNGEIDMVFTKSISRFARNTLDTLKYVRMLK 102 (169)
T ss_dssp HHHHHHHHHHHTTCCSEEEESCHHHHCSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCcEEEEEeccccccChHHHHHHHHHHH
Confidence 3466777777655 788999999999887766665543
No 29
>1se7_A HOT, homologue of the theta subunit of DNA polymerase III; E. coli bacteriophage P1, homologue of theta, E. coli DNA polymerase III; NMR {Enterobacteria phage P1} SCOP: a.237.1.1 PDB: 2ido_B*
Probab=29.21 E-value=78 Score=19.69 Aligned_cols=36 Identities=19% Similarity=0.240 Sum_probs=31.3
Q ss_pred HHHhhhhcccchhhhhhhhHHHHHHHHHHhcCCCCC
Q psy53 32 MNSIERNLLTKNRDRFTQNLSMFRRDINDSLKGPNM 67 (78)
Q Consensus 32 M~gIe~nL~~kNRDrFTQNLs~FRrdvr~~lk~~~~ 67 (78)
.+.||++....-|+-|-+-|..+|+.-+...+.+.+
T Consensus 38 ~~~Ve~~~pe~~R~~F~eRL~~YR~~~~~~~~~~~~ 73 (83)
T 1se7_A 38 AEQVAREQPENLRTYFMERLRHYRQLSLQLPKGSDP 73 (83)
T ss_dssp HHHHHTSCCGGGHHHHHHHHHHHHHHHHHSSTTSCS
T ss_pred HHHHhhcCCHHHHHHHHHHHHHHHHHHHHcCCCCCc
Confidence 467899999999999999999999998888776644
No 30
>4aik_A Transcriptional regulator SLYA; transcription, transcription factor; 1.85A {Yersinia pseudotuberculosis} PDB: 4aih_A 4aij_A 3qpt_A* 3q5f_A*
Probab=28.86 E-value=83 Score=19.59 Aligned_cols=33 Identities=21% Similarity=0.323 Sum_probs=18.8
Q ss_pred HHHHHHHHHhhcCCchhHHHHHHHHHHHHHHhh
Q psy53 4 YFNQLRENIVRGQPPDKQASMVQWFENLMNSIE 36 (78)
Q Consensus 4 ~f~~lk~~li~sQp~ekq~~l~~~F~~LM~gIe 36 (78)
.+..+-+.+++.-+++.++.+..++++|.+.++
T Consensus 106 ~~~~~~~~~~~~l~~ee~~~l~~~L~kl~~nl~ 138 (151)
T 4aik_A 106 VISSTRKEILGGISSDEIAVLSGLIDKLEKNII 138 (151)
T ss_dssp HHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHH
Confidence 344455556666666666666665555555444
No 31
>3bvp_A INT, TP901-1 integrase; DNA recombinase, recombination; 2.10A {Lactococcus phage tp901-1}
Probab=26.82 E-value=58 Score=20.15 Aligned_cols=38 Identities=21% Similarity=0.308 Sum_probs=26.2
Q ss_pred HHHHHHHHHhhhh----cccchhhhhhhhHHHHHHHHHHhcC
Q psy53 26 QWFENLMNSIERN----LLTKNRDRFTQNLSMFRRDINDSLK 63 (78)
Q Consensus 26 ~~F~~LM~gIe~n----L~~kNRDrFTQNLs~FRrdvr~~lk 63 (78)
--|..|++.++.. |-...-|||.+|....-..+...|+
T Consensus 58 p~l~~ll~~~~~g~~d~lvv~~ldRl~R~~~~~~~~~~~~l~ 99 (138)
T 3bvp_A 58 PAMQRLINDIENKAFDTVLVYKLDRLSRSVRDTLYLVKDVFT 99 (138)
T ss_dssp HHHHHHHHGGGGTSCSEEEESSHHHHCSCHHHHHHHHHHTTG
T ss_pred HHHHHHHHHHHhCCCCEEEEEeCCcccccHHHHHHHHHHHHH
Confidence 3477778888754 8899999999998662234443443
No 32
>2fa5_A Transcriptional regulator MARR/EMRR family; multiple antibiotics resistance repressor, XCC structural genomics, X-RAY diffraction; 1.80A {Xanthomonas campestris}
Probab=26.48 E-value=97 Score=18.71 Aligned_cols=29 Identities=7% Similarity=0.133 Sum_probs=13.0
Q ss_pred HHHHhhcCCchhHHHHHHHHHHHHHHhhh
Q psy53 9 RENIVRGQPPDKQASMVQWFENLMNSIER 37 (78)
Q Consensus 9 k~~li~sQp~ekq~~l~~~F~~LM~gIe~ 37 (78)
-+.++..-+++.++.+..++++|...++.
T Consensus 128 ~~~~~~~l~~~e~~~l~~~l~~l~~~~~~ 156 (162)
T 2fa5_A 128 EQRLMSVFSAEEQQTLERLIDRLAKDGLP 156 (162)
T ss_dssp HHHHHTTSCHHHHHHHHHHHHHHHHTHHH
T ss_pred HHHHHhcCCHHHHHHHHHHHHHHHHhhhh
Confidence 33444444444444444444444444433
No 33
>3s2w_A Transcriptional regulator, MARR family; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics; 2.45A {Methanosarcina mazei}
Probab=25.55 E-value=1.2e+02 Score=18.43 Aligned_cols=32 Identities=9% Similarity=0.065 Sum_probs=16.3
Q ss_pred HHHHHHHHhhhhcccchhhhhhhhHHHHHHHH
Q psy53 27 WFENLMNSIERNLLTKNRDRFTQNLSMFRRDI 58 (78)
Q Consensus 27 ~F~~LM~gIe~nL~~kNRDrFTQNLs~FRrdv 58 (78)
.+....+.+-..|+...++.|..-|..+...+
T Consensus 124 ~~~~~~~~~~~~l~~~e~~~l~~~l~~l~~~l 155 (159)
T 3s2w_A 124 IASEWGEILFSSFDDRQRREITNSLEIMFENG 155 (159)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHH
Confidence 33444444444555556666655555554444
No 34
>1h2v_C 80 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: a.118.1.14 a.118.1.14 a.118.1.14 PDB: 1n52_A* 1n54_A 3fex_A 3fey_A 1h6k_A 1h2t_C* 1h2u_A*
Probab=24.01 E-value=1.8e+02 Score=24.13 Aligned_cols=53 Identities=23% Similarity=0.359 Sum_probs=45.7
Q ss_pred hHHHHHHHHHHhhcCCchhHHHHHHHHHHHHHHhhhhcccchhhhhhhhHHHHHHHH
Q psy53 2 DIYFNQLRENIVRGQPPDKQASMVQWFENLMNSIERNLLTKNRDRFTQNLSMFRRDI 58 (78)
Q Consensus 2 e~~f~~lk~~li~sQp~ekq~~l~~~F~~LM~gIe~nL~~kNRDrFTQNLs~FRrdv 58 (78)
+-||..+=..++.-+|..=.+.+++||+.|-..|+ .|++.=++|| +.-|.|.+
T Consensus 350 ~iyY~sll~eLCkl~P~~~~~v~~~ai~~lY~~i~-~md~e~~~Rf---~dwFShhL 402 (771)
T 1h2v_C 350 DVMYTTLLIELCKLQPGSLPQVLAQATEMLYMRLD-TMNTTCVDRF---INWFSHHL 402 (771)
T ss_dssp HHHHHHHHHHHHHHSTTTHHHHHHHHHHHHHHTGG-GBCHHHHHHH---HHHHHHHH
T ss_pred HHHHHHHHHHHHHhChHhHHHHHHHHHHHHHHhhc-ccCHHHHHHH---HHHHHHHH
Confidence 35899999999999998889999999999999995 7999999998 55676665
No 35
>1lj9_A Transcriptional regulator SLYA; HTH DNA binding protein, structural genomics, PSI, protein structure initiative; 1.60A {Enterococcus faecalis} SCOP: a.4.5.28
Probab=23.76 E-value=1.2e+02 Score=17.84 Aligned_cols=26 Identities=4% Similarity=0.243 Sum_probs=11.7
Q ss_pred HHHhhcCCchhHHHHHHHHHHHHHHh
Q psy53 10 ENIVRGQPPDKQASMVQWFENLMNSI 35 (78)
Q Consensus 10 ~~li~sQp~ekq~~l~~~F~~LM~gI 35 (78)
..+++.-+++..+.+...++++.+.+
T Consensus 109 ~~~~~~l~~~e~~~l~~~l~~l~~~l 134 (144)
T 1lj9_A 109 QVALQGLSEVEISQLADYLVRMRKNV 134 (144)
T ss_dssp HHHTTTCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhcCCHHHHHHHHHHHHHHHHhH
Confidence 34444444444444444444444433
No 36
>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B
Probab=23.50 E-value=2.7e+02 Score=22.59 Aligned_cols=44 Identities=20% Similarity=0.404 Sum_probs=35.0
Q ss_pred hhHHHHHHHHHHHHHHhhhhcccchhhhhhhhHH-------HHHHHHHHhc
Q psy53 19 DKQASMVQWFENLMNSIERNLLTKNRDRFTQNLS-------MFRRDINDSL 62 (78)
Q Consensus 19 ekq~~l~~~F~~LM~gIe~nL~~kNRDrFTQNLs-------~FRrdvr~~l 62 (78)
+.+..+.+|..+++...=++|+++.+.+|-++|- .|++.+|+.+
T Consensus 951 ~~~~~~~~~l~~~l~~~~~~~~~~~~~~f~~~l~~~~~~~~~f~~~~rdf~ 1001 (1049)
T 3m1i_C 951 SNQVYLSQYLANMLSNAFPHLTSEQIASFLSALTKQYKDLVVFKGTLRDFL 1001 (1049)
T ss_dssp CHHHHHHHHHHHHHHHHCTTSCHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHccCCHHHHHHHHHHHh
Confidence 4777889999999866558999999999988854 5777777654
No 37
>3vlc_E Golgi to ER traffic protein 1; ATPase, membrane protein insertion, ATP binding, membrane PR binding; HET: ADP; 4.50A {Saccharomyces cerevisiae}
Probab=23.47 E-value=1.5e+02 Score=18.87 Aligned_cols=51 Identities=18% Similarity=0.225 Sum_probs=31.6
Q ss_pred HHHHHHHH--hhcCC-chhHHHHHHHHHHHHHHhhh--hcccchhhhhhhhHHHHH
Q psy53 5 FNQLRENI--VRGQP-PDKQASMVQWFENLMNSIER--NLLTKNRDRFTQNLSMFR 55 (78)
Q Consensus 5 f~~lk~~l--i~sQp-~ekq~~l~~~F~~LM~gIe~--nL~~kNRDrFTQNLs~FR 55 (78)
+.+|+.++ |++|. -.|=+++..=+++|+++||. .-....|..|...|+.+|
T Consensus 39 ~~~lk~E~~stSaQDEFAKWAKL~Rk~DKl~~ele~l~~~L~s~ks~fd~~l~~vR 94 (94)
T 3vlc_E 39 RHELKEFNNSISAQDNYAKWTKNNRKLDSLDKEINNLKDEIQSENKAFQAHLHKLR 94 (94)
T ss_dssp HHHHHHHHTTSCTTTCHHHHHHHHHHHHHHHHHTTTHHHHTTTTHHHHTTCC----
T ss_pred HHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 34444444 34444 56778999999999999985 233456777777666554
No 38
>3bpj_A Eukaryotic translation initiation factor 3 subuni; EIF3S1, structural genomics, limited proteolysis, phosphoprotein, protein biosynthesis; 1.85A {Homo sapiens}
Probab=23.25 E-value=1.1e+02 Score=18.38 Aligned_cols=55 Identities=13% Similarity=0.185 Sum_probs=41.0
Q ss_pred HHHHHHHHHHhhcC-CchhHHHHHHHHHHHHHHhhhhcccchhhhhhhhHHHHHHH
Q psy53 3 IYFNQLRENIVRGQ-PPDKQASMVQWFENLMNSIERNLLTKNRDRFTQNLSMFRRD 57 (78)
Q Consensus 3 ~~f~~lk~~li~sQ-p~ekq~~l~~~F~~LM~gIe~nL~~kNRDrFTQNLs~FRrd 57 (78)
+.|..++..|..-- +-++...+..+.+.|+.++-.+|.+.+=-+..-.|++..-+
T Consensus 14 ~dF~~~~~~l~~kl~~~~ks~~y~~f~~~lir~l~~~L~~~dikkv~s~l~~l~nE 69 (80)
T 3bpj_A 14 DDFTEFGKLLKDKITQYEKSLYYASFLEVLVRDVCISLEIDDLKKITNSLTVLCSE 69 (80)
T ss_dssp HHHHHHHHHHHHHHGGGTTSTTHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhccCChhHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHH
Confidence 56777777664321 25666678999999999999999988877777777766544
No 39
>2fbh_A Transcriptional regulator PA3341; MARR, transcription regulator, APC5857, structural genomics, protein structure initiative; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.28
Probab=23.12 E-value=1.2e+02 Score=17.71 Aligned_cols=31 Identities=10% Similarity=-0.016 Sum_probs=16.0
Q ss_pred HHHHHHHHHhhhhcccchhhhhhhhHHHHHH
Q psy53 26 QWFENLMNSIERNLLTKNRDRFTQNLSMFRR 56 (78)
Q Consensus 26 ~~F~~LM~gIe~nL~~kNRDrFTQNLs~FRr 56 (78)
..+..++..+-..|+...++.|.+-|..+..
T Consensus 111 ~~~~~~~~~~~~~l~~~e~~~l~~~l~~l~~ 141 (146)
T 2fbh_A 111 AIAASVRNDVLTGIDESEQALCQQVLLRILA 141 (146)
T ss_dssp HHHHHHHHHHTTTCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHH
Confidence 3344444444455555666666555554443
No 40
>4f9k_A CAMP-dependent protein kinase type I-beta regulat subunit; structural genomics, PSI-biology; 2.80A {Homo sapiens} PDB: 2ezw_A 3im3_A 3im4_A
Probab=23.08 E-value=65 Score=20.71 Aligned_cols=40 Identities=15% Similarity=0.275 Sum_probs=31.9
Q ss_pred HHHHHHHHHhhcCCchhHHHHHHHHHHHHHHhhhhcccch
Q psy53 4 YFNQLRENIVRGQPPDKQASMVQWFENLMNSIERNLLTKN 43 (78)
Q Consensus 4 ~f~~lk~~li~sQp~ekq~~l~~~F~~LM~gIe~nL~~kN 43 (78)
.+..+=.+++..+|.+=.+-+...|++|-+.=+....+++
T Consensus 52 LLqe~tv~Ll~~RPeDPv~FLaeYF~kL~~~r~~~~~~~~ 91 (95)
T 4f9k_A 52 VLKDCIVHLCISKPERPMKFLREHFEKLEKEENRQILARQ 91 (95)
T ss_dssp TTHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHhHHHhhh
Confidence 4556667888999999999999999999887666655543
No 41
>3cjn_A Transcriptional regulator, MARR family; silicibacter pomeroy structural genomics, PSI-2, protein structure initiative; 1.95A {Silicibacter pomeroyi dss-3}
Probab=22.48 E-value=1.1e+02 Score=18.46 Aligned_cols=26 Identities=12% Similarity=0.216 Sum_probs=12.1
Q ss_pred HHHHHhhhhcccchhhhhhhhHHHHH
Q psy53 30 NLMNSIERNLLTKNRDRFTQNLSMFR 55 (78)
Q Consensus 30 ~LM~gIe~nL~~kNRDrFTQNLs~FR 55 (78)
.+...+-..|+...++.|.+-|..+.
T Consensus 129 ~~~~~~~~~l~~~e~~~l~~~l~~l~ 154 (162)
T 3cjn_A 129 ASHDRMFQGITPQERQAFLATLNKML 154 (162)
T ss_dssp HHHHHHTTTCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHHH
Confidence 33333444455555555555544443
No 42
>3bja_A Transcriptional regulator, MARR family, putative; NP_978771.1, putative MARR-like transcription regulator, MAR structural genomics; 2.38A {Bacillus cereus}
Probab=22.07 E-value=1.3e+02 Score=17.48 Aligned_cols=29 Identities=3% Similarity=0.112 Sum_probs=14.9
Q ss_pred HHHHHHHHhhhhcccchhhhhhhhHHHHH
Q psy53 27 WFENLMNSIERNLLTKNRDRFTQNLSMFR 55 (78)
Q Consensus 27 ~F~~LM~gIe~nL~~kNRDrFTQNLs~FR 55 (78)
.+......+-..|+..-++.|.+-|..+.
T Consensus 107 ~~~~~~~~~~~~l~~~e~~~l~~~l~~l~ 135 (139)
T 3bja_A 107 QYSDFLKENCGCFTKEEEGILEDLLLKWK 135 (139)
T ss_dssp HHHHHHHHHHCCSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHH
Confidence 33444444445555556666655555443
No 43
>2a61_A Transcriptional regulator TM0710; APC4350, MCSG, midwest center for structural genomics, PSI, protein structure initiative, MARR; 1.80A {Thermotoga maritima} SCOP: a.4.5.28
Probab=21.79 E-value=1.3e+02 Score=17.60 Aligned_cols=33 Identities=15% Similarity=0.301 Sum_probs=17.0
Q ss_pred HHHHHHhhhhcccchhhhhhhhHHHHHHHHHHh
Q psy53 29 ENLMNSIERNLLTKNRDRFTQNLSMFRRDINDS 61 (78)
Q Consensus 29 ~~LM~gIe~nL~~kNRDrFTQNLs~FRrdvr~~ 61 (78)
...+..+-..|+...++.|.+-|..+...+...
T Consensus 109 ~~~~~~~~~~l~~~e~~~l~~~l~~l~~~l~~~ 141 (145)
T 2a61_A 109 ENFIEKITSDLGKEKSSKILDYLKELKGVMERN 141 (145)
T ss_dssp HHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHh
Confidence 333334444555566666666665555544433
No 44
>2eth_A Transcriptional regulator, putative, MAR family; MARR family, structural genomics, joint center for structura genomics, JCSG; 2.30A {Thermotoga maritima} SCOP: a.4.5.28
Probab=21.74 E-value=1.4e+02 Score=17.96 Aligned_cols=28 Identities=7% Similarity=0.207 Sum_probs=12.8
Q ss_pred HHHHhhhhcccchhhhhhhhHHHHHHHH
Q psy53 31 LMNSIERNLLTKNRDRFTQNLSMFRRDI 58 (78)
Q Consensus 31 LM~gIe~nL~~kNRDrFTQNLs~FRrdv 58 (78)
.+..+-..|+...++.|.+=|..+...+
T Consensus 122 ~~~~~~~~l~~ee~~~l~~~L~~l~~~l 149 (154)
T 2eth_A 122 LLKSVLEKFSEEDFKVVSEGFNRMVEAL 149 (154)
T ss_dssp HHHHHHTTCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHHHHHH
Confidence 3333334445555555555444444433
No 45
>2dnx_A Syntaxin-12; snare, HABC domain, UP and DOWN three helix bundle, LEFT-handed twist, membrane fusion, vesicle transport, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=21.61 E-value=94 Score=19.85 Aligned_cols=29 Identities=14% Similarity=0.338 Sum_probs=19.2
Q ss_pred HHHHHHHhhhhcccchhhhhhhhHHHHHHHHHHh
Q psy53 28 FENLMNSIERNLLTKNRDRFTQNLSMFRRDINDS 61 (78)
Q Consensus 28 F~~LM~gIe~nL~~kNRDrFTQNLs~FRrdvr~~ 61 (78)
|..|-..|..||. ++++|++.|++.++.+
T Consensus 12 f~~l~~~is~~I~-----~In~~vs~l~r~v~~L 40 (130)
T 2dnx_A 12 FSSIIQTCSGNIQ-----RISQATAQIKNLMSQL 40 (130)
T ss_dssp HHHHHHHHHHHHH-----HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH-----HHHHHHHHHHHHHHHh
Confidence 5556666666654 5778888888876543
No 46
>2bez_C E2 glycoprotein; coiled coil, membrane fusion, severe acute respiratory syndrome, viral protein; 1.6A {Sars coronavirus} SCOP: h.3.3.1 PDB: 1zv8_A 1zvb_A
Probab=21.55 E-value=54 Score=20.43 Aligned_cols=24 Identities=21% Similarity=0.373 Sum_probs=19.7
Q ss_pred chhHHHHHHHHHHHHHHhhhhccc
Q psy53 18 PDKQASMVQWFENLMNSIERNLLT 41 (78)
Q Consensus 18 ~ekq~~l~~~F~~LM~gIe~nL~~ 41 (78)
.+.|..++..|.+.|..|..-+.+
T Consensus 4 ~~NQk~iA~sFN~A~~~i~~g~~t 27 (77)
T 2bez_C 4 YENQKQIANQFNKAISQIQESLTT 27 (77)
T ss_dssp SSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 478999999999999999655543
No 47
>3nrv_A Putative transcriptional regulator (MARR/EMRR FAM; PSI-2, protein structure initiati structural genomics; HET: MSE; 2.00A {Acinetobacter SP}
Probab=21.46 E-value=1.2e+02 Score=18.00 Aligned_cols=31 Identities=10% Similarity=0.117 Sum_probs=16.1
Q ss_pred HHHHHHHhhhhcccchhhhhhhhHHHHHHHH
Q psy53 28 FENLMNSIERNLLTKNRDRFTQNLSMFRRDI 58 (78)
Q Consensus 28 F~~LM~gIe~nL~~kNRDrFTQNLs~FRrdv 58 (78)
+......+-..|+...++.|.+-|..+...+
T Consensus 115 ~~~~~~~~~~~l~~~e~~~l~~~l~~l~~~l 145 (148)
T 3nrv_A 115 AIEREKQLLEEFEEAEKDQLFILLKKLRNKV 145 (148)
T ss_dssp THHHHHHHTTTCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh
Confidence 3334444444556666666666555554443
No 48
>3e6m_A MARR family transcriptional regulator; APC88769, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; 2.20A {Silicibacter pomeroyi}
Probab=21.35 E-value=1.3e+02 Score=18.32 Aligned_cols=28 Identities=14% Similarity=0.361 Sum_probs=12.8
Q ss_pred HHHHHhhcCCchhHHHHHHHHHHHHHHh
Q psy53 8 LRENIVRGQPPDKQASMVQWFENLMNSI 35 (78)
Q Consensus 8 lk~~li~sQp~ekq~~l~~~F~~LM~gI 35 (78)
+-..++..-+++..+.+....++|.+.+
T Consensus 131 ~~~~~~~~l~~~e~~~l~~~L~~l~~~l 158 (161)
T 3e6m_A 131 FHAELVGNVDPDKLQTCIEVLGEILKGK 158 (161)
T ss_dssp HHHHHHTTCCHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHHHHHh
Confidence 3344444444444444444444444433
No 49
>3oop_A LIN2960 protein; protein structure initiative, PSI-2, structural genomics, MI center for structural genomics, MCSG, unknown function; 1.78A {Listeria innocua}
Probab=20.88 E-value=1.2e+02 Score=17.89 Aligned_cols=24 Identities=17% Similarity=0.209 Sum_probs=10.5
Q ss_pred HHHHHHhhhhcccchhhhhhhhHH
Q psy53 29 ENLMNSIERNLLTKNRDRFTQNLS 52 (78)
Q Consensus 29 ~~LM~gIe~nL~~kNRDrFTQNLs 52 (78)
......+-..|+...++.|.+=|.
T Consensus 113 ~~~~~~~~~~l~~~e~~~l~~~L~ 136 (143)
T 3oop_A 113 EASCEKMFAGVTRTDLEQFTAILK 136 (143)
T ss_dssp HHHHHHHTTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHH
Confidence 333333334444555554444443
No 50
>3deu_A Transcriptional regulator SLYA; MARR, WING-helix, transcription regulator, activator, DNA-binding, repressor; HET: SAL; 2.30A {Salmonella typhimurium} SCOP: a.4.5.28
Probab=20.47 E-value=1.6e+02 Score=18.24 Aligned_cols=37 Identities=8% Similarity=0.153 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHhhhhcccchhhhhhhhHHHHHHHHHH
Q psy53 24 MVQWFENLMNSIERNLLTKNRDRFTQNLSMFRRDIND 60 (78)
Q Consensus 24 l~~~F~~LM~gIe~nL~~kNRDrFTQNLs~FRrdvr~ 60 (78)
+...+..+...+-..|+...++.|..-|..+...+..
T Consensus 125 ~~~~~~~~~~~~~~~l~~~e~~~l~~~L~~l~~~l~~ 161 (166)
T 3deu_A 125 MEEVIHKTRGEILAGISSEEIELLIKLIAKLEHNIME 161 (166)
T ss_dssp HHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444556666666666666555555443
No 51
>3lhk_A Putative DNA binding protein MJ0014; MCSG, PSI-2, structural genomics; 2.20A {Methanocaldococcus jannaschii}
Probab=20.19 E-value=44 Score=21.61 Aligned_cols=29 Identities=14% Similarity=0.133 Sum_probs=22.3
Q ss_pred HHHHHHHHhhhh----cccchhhhhhhhHHHHH
Q psy53 27 WFENLMNSIERN----LLTKNRDRFTQNLSMFR 55 (78)
Q Consensus 27 ~F~~LM~gIe~n----L~~kNRDrFTQNLs~FR 55 (78)
-|..||+.|+.. |-...-|||..|..-+-
T Consensus 54 ~l~~ll~~~~~g~id~vvv~~ldRL~R~~~~~l 86 (154)
T 3lhk_A 54 NYKKLLKMVMNRKVEKVIIAYPDRLTRFGFETL 86 (154)
T ss_dssp HHHHHHHHHHTTCEEEEEESSHHHHCSSCHHHH
T ss_pred HHHHHHHHHHcCCCCEEEEEeCCcccccHHHHH
Confidence 466677777766 88999999999986553
Done!