Query psy53
Match_columns 78
No_of_seqs 75 out of 77
Neff 4.0
Searched_HMMs 13730
Date Fri Aug 16 23:00:30 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy53.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/53hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2otaa1 a.284.1.1 (A:7-68) Hyp 62.3 6.2 0.00045 22.4 4.1 27 6-32 32-58 (62)
2 d1lnwa_ a.4.5.28 (A:) MexR rep 61.7 4.8 0.00035 23.8 3.8 31 3-33 109-139 (141)
3 d2o9ux1 d.17.1.1 (X:1001-1096) 48.3 3.9 0.00028 24.7 1.6 18 46-63 10-27 (96)
4 d2fbha1 a.4.5.28 (A:8-144) Tra 44.5 16 0.0012 20.9 4.1 36 22-57 98-133 (137)
5 d2fbka1 a.4.5.28 (A:8-179) Tra 44.4 14 0.001 22.5 4.0 33 4-36 139-171 (172)
6 d1h2vc2 a.118.1.14 (C:291-480) 44.3 33 0.0024 22.6 6.1 52 3-58 80-131 (190)
7 d1lj9a_ a.4.5.28 (A:) Transcri 39.8 21 0.0015 20.9 4.2 36 4-39 103-138 (144)
8 d1nzea_ a.24.18.1 (A:) Oxygen- 38.0 17 0.0012 21.7 3.5 26 11-36 54-79 (112)
9 d1xvla1 c.92.2.2 (A:49-327) Mn 33.4 14 0.001 24.0 2.8 41 18-62 111-151 (279)
10 d1iuqa_ c.112.1.1 (A:) Glycero 32.6 27 0.002 24.9 4.4 36 1-36 37-76 (367)
11 d3deua1 a.4.5.28 (A:2-141) Tra 31.8 37 0.0027 19.3 4.3 38 22-59 101-138 (140)
12 d2hwna1 a.31.1.1 (A:5-43) cAMP 31.3 31 0.0023 17.4 3.8 31 3-33 7-37 (39)
13 d2a61a1 a.4.5.28 (A:5-143) Tra 30.6 24 0.0017 20.3 3.3 38 22-59 99-136 (139)
14 d1pq4a_ c.92.2.2 (A:) Periplas 28.9 19 0.0013 23.7 2.8 23 39-61 155-177 (289)
15 d1toaa_ c.92.2.2 (A:) Periplas 28.6 19 0.0014 23.1 2.8 24 38-61 123-146 (277)
16 d1alla_ a.1.1.3 (A:) Allophyco 28.4 47 0.0034 20.6 4.6 33 3-35 127-159 (160)
17 d1zeea1 a.266.1.2 (A:6-392) Hy 27.8 31 0.0022 25.4 4.0 53 3-55 252-306 (387)
18 d1s3ja_ a.4.5.28 (A:) Putative 26.6 46 0.0033 19.0 4.1 29 25-53 107-135 (143)
19 d1psza_ c.92.2.2 (A:) Pneumoco 24.8 25 0.0018 22.8 2.8 25 38-62 137-161 (286)
20 d1bgfa_ a.90.1.1 (A:) Transcri 23.7 63 0.0046 19.6 4.5 30 10-39 36-69 (124)
21 d2i8da1 d.198.4.1 (A:2-122) Un 21.8 41 0.003 19.6 3.2 25 10-34 4-29 (121)
22 d1fkma1 a.69.2.1 (A:249-442) Y 21.5 20 0.0014 22.1 1.7 12 27-38 180-191 (194)
23 d2p5ka1 a.4.5.3 (A:2-64) Argin 21.4 15 0.0011 20.2 0.9 34 10-45 10-43 (63)
No 1
>d2otaa1 a.284.1.1 (A:7-68) Hypothetical protein CPS2611 {Colwellia psychrerythraea [TaxId: 28229]}
Probab=62.30 E-value=6.2 Score=22.39 Aligned_cols=27 Identities=22% Similarity=0.380 Sum_probs=21.7
Q ss_pred HHHHHHHhhcCCchhHHHHHHHHHHHH
Q psy53 6 NQLRENIVRGQPPDKQASMVQWFENLM 32 (78)
Q Consensus 6 ~~lk~~li~sQp~ekq~~l~~~F~~LM 32 (78)
.++=-.||.+.||++|+.+++-|.+-+
T Consensus 32 GN~vTnii~~V~~~qR~~iAe~Fa~AL 58 (62)
T d2otaa1 32 GNAVTNIIAQVPESKRVAVVDNFTKAL 58 (62)
T ss_dssp HHHHHHHHTTSCGGGHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence 445567888999999999999997644
No 2
>d1lnwa_ a.4.5.28 (A:) MexR repressor {Pseudomonas aeruginosa [TaxId: 287]}
Probab=61.69 E-value=4.8 Score=23.79 Aligned_cols=31 Identities=13% Similarity=0.359 Sum_probs=20.7
Q ss_pred HHHHHHHHHHhhcCCchhHHHHHHHHHHHHH
Q psy53 3 IYFNQLRENIVRGQPPDKQASMVQWFENLMN 33 (78)
Q Consensus 3 ~~f~~lk~~li~sQp~ekq~~l~~~F~~LM~ 33 (78)
+.+..+-+.++..-+++.++.+..++++|++
T Consensus 109 ~~~~~~~~~~~~~ls~~e~~~l~~~L~kl~a 139 (141)
T d1lnwa_ 109 AIMSRVHDELFAPLTPVEQATLVHLLDQCLA 139 (141)
T ss_dssp HHHHHHHHHHHTTSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHHHh
Confidence 3455556666777777777777777777765
No 3
>d2o9ux1 d.17.1.1 (X:1001-1096) Monellin, B & A chains together {Serendipity berry (Dioscoreophyllum cumminsii) [TaxId: 3457]}
Probab=48.30 E-value=3.9 Score=24.66 Aligned_cols=18 Identities=39% Similarity=0.545 Sum_probs=14.3
Q ss_pred hhhhhHHHHHHHHHHhcC
Q psy53 46 RFTQNLSMFRRDINDSLK 63 (78)
Q Consensus 46 rFTQNLs~FRrdvr~~lk 63 (78)
-|||||..|.-|-..-+.
T Consensus 10 pftqnlgkfavdeenkig 27 (96)
T d2o9ux1 10 PFTQNLGKFAVDEENKIG 27 (96)
T ss_dssp HHHHHHHHHHHHHHHHHC
T ss_pred chhhhhcceeeccccccc
Confidence 599999999988665554
No 4
>d2fbha1 a.4.5.28 (A:8-144) Transcriptional regulator PA3341 {Pseudomonas aeruginosa [TaxId: 287]}
Probab=44.50 E-value=16 Score=20.88 Aligned_cols=36 Identities=11% Similarity=0.039 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHHHhhhhcccchhhhhhhhHHHHHHH
Q psy53 22 ASMVQWFENLMNSIERNLLTKNRDRFTQNLSMFRRD 57 (78)
Q Consensus 22 ~~l~~~F~~LM~gIe~nL~~kNRDrFTQNLs~FRrd 57 (78)
+.+..++..+.+.+-..|++..++.|..=|..++..
T Consensus 98 ~~~~~~~~~~~~~~~~~l~~~e~~~l~~~l~~l~~~ 133 (137)
T d2fbha1 98 ADIEAIAASVRNDVLTGIDESEQALCQQVLLRILAN 133 (137)
T ss_dssp HHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHH
Confidence 445555555555666666666666666555544443
No 5
>d2fbka1 a.4.5.28 (A:8-179) Transcriptional regulator DR1159 {Deinococcus radiodurans [TaxId: 1299]}
Probab=44.39 E-value=14 Score=22.51 Aligned_cols=33 Identities=6% Similarity=0.140 Sum_probs=23.7
Q ss_pred HHHHHHHHHhhcCCchhHHHHHHHHHHHHHHhh
Q psy53 4 YFNQLRENIVRGQPPDKQASMVQWFENLMNSIE 36 (78)
Q Consensus 4 ~f~~lk~~li~sQp~ekq~~l~~~F~~LM~gIe 36 (78)
.+..+-+.+++.-+++.++.+..++++|...+|
T Consensus 139 ~~~~~~~~~~~~l~~~E~~~l~~~L~kl~~~le 171 (172)
T d2fbka1 139 AHLATTQRVLAPLSAQEQRTLEELAGRMLAGLE 171 (172)
T ss_dssp HHHHHHHHHHTTSCTTHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhC
Confidence 345556667777777788888887777777766
No 6
>d1h2vc2 a.118.1.14 (C:291-480) CBP80, 80KDa nuclear cap-binding protein {Human (Homo sapiens) [TaxId: 9606]}
Probab=44.28 E-value=33 Score=22.63 Aligned_cols=52 Identities=21% Similarity=0.317 Sum_probs=44.4
Q ss_pred HHHHHHHHHHhhcCCchhHHHHHHHHHHHHHHhhhhcccchhhhhhhhHHHHHHHH
Q psy53 3 IYFNQLRENIVRGQPPDKQASMVQWFENLMNSIERNLLTKNRDRFTQNLSMFRRDI 58 (78)
Q Consensus 3 ~~f~~lk~~li~sQp~ekq~~l~~~F~~LM~gIe~nL~~kNRDrFTQNLs~FRrdv 58 (78)
-||..+=..++.-||..=-+.++++.+.|-..+ .+|...-+||| +.-|.+.+
T Consensus 80 iyY~sll~elCK~~P~~ip~v~~~ai~~ly~~l-~~md~e~~~Rf---~dWfShHL 131 (190)
T d1h2vc2 80 VMYTTLLIELCKLQPGSLPQVLAQATEMLYMRL-DTMNTTCVDRF---INWFSHHL 131 (190)
T ss_dssp HHHHHHHHHHHHHSTTTHHHHHHHHHHHHHHTG-GGBCHHHHHHH---HHHHHHHH
T ss_pred HHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhc-ccCCHHHHHHH---HHHHHHHh
Confidence 478899999999999888899999999999998 56999999999 45565554
No 7
>d1lj9a_ a.4.5.28 (A:) Transcriptional regulator SlyA {Enterococcus faecalis [TaxId: 1351]}
Probab=39.84 E-value=21 Score=20.85 Aligned_cols=36 Identities=3% Similarity=0.143 Sum_probs=22.2
Q ss_pred HHHHHHHHHhhcCCchhHHHHHHHHHHHHHHhhhhc
Q psy53 4 YFNQLRENIVRGQPPDKQASMVQWFENLMNSIERNL 39 (78)
Q Consensus 4 ~f~~lk~~li~sQp~ekq~~l~~~F~~LM~gIe~nL 39 (78)
.+..+-+.+++.-+++.++.+...|.++.+.++.+.
T Consensus 103 ~~~~~~~~~~~~l~~ee~~~l~~~L~~l~~~l~~~~ 138 (144)
T d1lj9a_ 103 ENQHSNQVALQGLSEVEISQLADYLVRMRKNVSEDW 138 (144)
T ss_dssp HHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555566666677777776666666665555443
No 8
>d1nzea_ a.24.18.1 (A:) Oxygen-evolving enhancer protein 3, {Spinach (Spinacia oleracea) [TaxId: 3562]}
Probab=38.01 E-value=17 Score=21.72 Aligned_cols=26 Identities=23% Similarity=0.529 Sum_probs=20.0
Q ss_pred HHhhcCCchhHHHHHHHHHHHHHHhh
Q psy53 11 NIVRGQPPDKQASMVQWFENLMNSIE 36 (78)
Q Consensus 11 ~li~sQp~ekq~~l~~~F~~LM~gIe 36 (78)
.||++-||+.+..+..+..+|.+.+|
T Consensus 54 ~li~~~~~~~k~~~~~la~~lf~~le 79 (112)
T d1nzea_ 54 TVISAKPKDEKKSLQELTSKLFSSID 79 (112)
T ss_dssp HHHHTSCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhCCHhhhHHHHHHHHHHHHHHH
Confidence 57888998888888777777766665
No 9
>d1xvla1 c.92.2.2 (A:49-327) Mn transporter MntC {Synechocystis sp. pcc 6803 [TaxId: 1148]}
Probab=33.37 E-value=14 Score=24.05 Aligned_cols=41 Identities=12% Similarity=0.200 Sum_probs=27.7
Q ss_pred chhHHHHHHHHHHHHHHhhhhcccchhhhhhhhHHHHHHHHHHhc
Q psy53 18 PDKQASMVQWFENLMNSIERNLLTKNRDRFTQNLSMFRRDINDSL 62 (78)
Q Consensus 18 ~ekq~~l~~~F~~LM~gIe~nL~~kNRDrFTQNLs~FRrdvr~~l 62 (78)
|..-..+.....+-+.. +.++|++.|.+|...|...+..+.
T Consensus 111 p~~~~~~a~~Ia~~L~~----~dP~~~~~y~~n~~~~~~~l~~l~ 151 (279)
T d1xvla1 111 PRNALVYVENIRQAFVE----LDPDNAKYYNANAAVYSEQLKAID 151 (279)
T ss_dssp HHHHHHHHHHHHHHHHH----HCGGGHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHH----hChhhhhHHHHHHHHHhhhhhhhH
Confidence 34444444444444443 467899999999999988877664
No 10
>d1iuqa_ c.112.1.1 (A:) Glycerol-3-phosphate (1)-acyltransferase {Cushaw squash (Cucurbita moschata) [TaxId: 3662]}
Probab=32.63 E-value=27 Score=24.86 Aligned_cols=36 Identities=14% Similarity=0.415 Sum_probs=26.6
Q ss_pred ChHHHHHHHHHHhhcCCchhHH----HHHHHHHHHHHHhh
Q psy53 1 MDIYFNQLRENIVRGQPPDKQA----SMVQWFENLMNSIE 36 (78)
Q Consensus 1 ~e~~f~~lk~~li~sQp~ekq~----~l~~~F~~LM~gIe 36 (78)
||++|.++|...+++-.|...+ .|...|+-.+.+|+
T Consensus 37 ~~~~~~~y~~a~~~s~~~~a~e~~~~~~~~~~~~~~~~~~ 76 (367)
T d1iuqa_ 37 MEELYQNYRNAVIESGNPKADEIVLSNMTVALDRILLDVE 76 (367)
T ss_dssp HHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHHhccC
Confidence 6788999999888887776664 34555777777776
No 11
>d3deua1 a.4.5.28 (A:2-141) Transcriptional regulator SlyA {Salmonella typhimurium [TaxId: 90371]}
Probab=31.81 E-value=37 Score=19.25 Aligned_cols=38 Identities=11% Similarity=0.149 Sum_probs=26.5
Q ss_pred HHHHHHHHHHHHHhhhhcccchhhhhhhhHHHHHHHHH
Q psy53 22 ASMVQWFENLMNSIERNLLTKNRDRFTQNLSMFRRDIN 59 (78)
Q Consensus 22 ~~l~~~F~~LM~gIe~nL~~kNRDrFTQNLs~FRrdvr 59 (78)
+.+...+......+-.+|++.-++.|.+-|......+.
T Consensus 101 ~~~~~~~~~~~~~~~~~l~~ee~~~~~~~L~~i~~nl~ 138 (140)
T d3deua1 101 AEMEEVIHKTRGEILAGISSEEIELLIKLIAKLEHNIM 138 (140)
T ss_dssp HHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHH
Confidence 45556666777777777888888888877766665544
No 12
>d2hwna1 a.31.1.1 (A:5-43) cAMP-dependent protein kinase type II regulatory subunit {Mouse (Mus musculus) [TaxId: 10090]}
Probab=31.28 E-value=31 Score=17.38 Aligned_cols=31 Identities=26% Similarity=0.444 Sum_probs=25.4
Q ss_pred HHHHHHHHHHhhcCCchhHHHHHHHHHHHHH
Q psy53 3 IYFNQLRENIVRGQPPDKQASMVQWFENLMN 33 (78)
Q Consensus 3 ~~f~~lk~~li~sQp~ekq~~l~~~F~~LM~ 33 (78)
+...++-..++..||.+=-+--+..|.+|.+
T Consensus 7 ~lL~~ftrevLR~qP~di~~faa~YF~~L~~ 37 (39)
T d2hwna1 7 ELLQGYTVEVLRQQPPDLVDFAVEYFTRLRE 37 (39)
T ss_dssp HHHHHHHHHHHHHCCSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCchHHHHHHHHHHHHHh
Confidence 3445666788999999999999999999875
No 13
>d2a61a1 a.4.5.28 (A:5-143) Transcriptional regulator TM0710 {Thermotoga maritima [TaxId: 2336]}
Probab=30.63 E-value=24 Score=20.29 Aligned_cols=38 Identities=13% Similarity=0.271 Sum_probs=26.2
Q ss_pred HHHHHHHHHHHHHhhhhcccchhhhhhhhHHHHHHHHH
Q psy53 22 ASMVQWFENLMNSIERNLLTKNRDRFTQNLSMFRRDIN 59 (78)
Q Consensus 22 ~~l~~~F~~LM~gIe~nL~~kNRDrFTQNLs~FRrdvr 59 (78)
+.+...+...++.+-.+|++..++.|.+.|..++..+.
T Consensus 99 ~~~~~~~~~~~~~~~~~l~~~e~~~l~~~l~~l~~~le 136 (139)
T d2a61a1 99 EKVIERRENFIEKITSDLGKEKSSKILDYLKELKGVME 136 (139)
T ss_dssp HHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHh
Confidence 45555666667777777777777777777777766543
No 14
>d1pq4a_ c.92.2.2 (A:) Periplasmic zinc binding protein ZnuA {Synechocystis sp. pcc 6803 [TaxId: 1148]}
Probab=28.93 E-value=19 Score=23.69 Aligned_cols=23 Identities=30% Similarity=0.530 Sum_probs=18.9
Q ss_pred cccchhhhhhhhHHHHHHHHHHh
Q psy53 39 LLTKNRDRFTQNLSMFRRDINDS 61 (78)
Q Consensus 39 L~~kNRDrFTQNLs~FRrdvr~~ 61 (78)
+.+.|++.|.+|+..|...+..+
T Consensus 155 ~dP~~~~~y~~N~~~~~~~L~~l 177 (289)
T d1pq4a_ 155 LDPDNRDQYEANLAAFLAELERL 177 (289)
T ss_dssp HCGGGHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhhhhhhhhHHHHHhhHHHH
Confidence 57889999999999998776654
No 15
>d1toaa_ c.92.2.2 (A:) Periplasmic zinc binding protein TroA {Treponema pallidum [TaxId: 160]}
Probab=28.55 E-value=19 Score=23.14 Aligned_cols=24 Identities=21% Similarity=0.458 Sum_probs=19.1
Q ss_pred hcccchhhhhhhhHHHHHHHHHHh
Q psy53 38 NLLTKNRDRFTQNLSMFRRDINDS 61 (78)
Q Consensus 38 nL~~kNRDrFTQNLs~FRrdvr~~ 61 (78)
-+.+.|++.|.+|+..|...+..+
T Consensus 123 ~~dP~~~~~y~~n~~~~~~~L~~l 146 (277)
T d1toaa_ 123 KLLPGKTREFTQRYQAYQQQLDKL 146 (277)
T ss_dssp HHCGGGHHHHHHHHHHHHHHHHHH
T ss_pred HHhhhhHHHHHHHHHHHHHHHHHH
Confidence 456889999999999998877543
No 16
>d1alla_ a.1.1.3 (A:) Allophycocyanin alpha subunit {Spirulina platensis [TaxId: 118562]}
Probab=28.36 E-value=47 Score=20.59 Aligned_cols=33 Identities=9% Similarity=0.108 Sum_probs=28.0
Q ss_pred HHHHHHHHHHhhcCCchhHHHHHHHHHHHHHHh
Q psy53 3 IYFNQLRENIVRGQPPDKQASMVQWFENLMNSI 35 (78)
Q Consensus 3 ~~f~~lk~~li~sQp~ekq~~l~~~F~~LM~gI 35 (78)
..+..+|+....--+++-++.+..+|+-|..++
T Consensus 127 ~al~~mk~~~~~~ls~~~~~~~~~yfD~lI~~l 159 (160)
T d1alla_ 127 EGVRAMKSVATSLLSGADAAEAGSYFDYLIGAM 159 (160)
T ss_dssp HHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHc
Confidence 357889998888888999999999999997654
No 17
>d1zeea1 a.266.1.2 (A:6-392) Hypothetical protein SO4414 {Shewanella oneidensis [TaxId: 70863]}
Probab=27.77 E-value=31 Score=25.37 Aligned_cols=53 Identities=19% Similarity=0.274 Sum_probs=45.6
Q ss_pred HHHHHHHHHHhhcCCchhHHHHHHHHH--HHHHHhhhhcccchhhhhhhhHHHHH
Q psy53 3 IYFNQLRENIVRGQPPDKQASMVQWFE--NLMNSIERNLLTKNRDRFTQNLSMFR 55 (78)
Q Consensus 3 ~~f~~lk~~li~sQp~ekq~~l~~~F~--~LM~gIe~nL~~kNRDrFTQNLs~FR 55 (78)
..|.++.+....=.||+-|+.+..|=. .||+.|-.--....++.|-+||..|.
T Consensus 252 P~ysqfL~dmr~YMPP~hra~L~d~~r~PSl~d~vLsa~~~~~~~~y~~nL~afl 306 (387)
T d1zeea1 252 ASYSQMLVDKFLYMMPEDQQILRECMRRPNLMDDFLQAKGCIHQDWYQENLKLFI 306 (387)
T ss_dssp HHHHHHHHTTGGGSCHHHHHHHHHHTTSCCHHHHHHHTGGGGGSHHHHHHHHHHH
T ss_pred ccHHHHHHHHHhhCCHHHHHHHHHHhcCChhHHHHHhcccccchHHHHHHHHHHH
Confidence 357888888888899999999998874 68888888888888999999999993
No 18
>d1s3ja_ a.4.5.28 (A:) Putative transcriptional regulator YusO {Bacillus subtilis [TaxId: 1423]}
Probab=26.64 E-value=46 Score=18.97 Aligned_cols=29 Identities=7% Similarity=-0.104 Sum_probs=12.5
Q ss_pred HHHHHHHHHHhhhhcccchhhhhhhhHHH
Q psy53 25 VQWFENLMNSIERNLLTKNRDRFTQNLSM 53 (78)
Q Consensus 25 ~~~F~~LM~gIe~nL~~kNRDrFTQNLs~ 53 (78)
...+......+-..|+....+.|..=|..
T Consensus 107 ~~~~~~~~~~~~~~l~~~e~~~l~~~l~k 135 (143)
T d1s3ja_ 107 LAGRKAIMARYLSFLTEEEMLQAAHITAK 135 (143)
T ss_dssp HHHHHHHHHHHHTTSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 33344444444444444444444444433
No 19
>d1psza_ c.92.2.2 (A:) Pneumococcal surface antigen PssA {Pneumococcus (Streptococcus pneumoniae) [TaxId: 1313]}
Probab=24.80 E-value=25 Score=22.76 Aligned_cols=25 Identities=12% Similarity=0.234 Sum_probs=21.2
Q ss_pred hcccchhhhhhhhHHHHHHHHHHhc
Q psy53 38 NLLTKNRDRFTQNLSMFRRDINDSL 62 (78)
Q Consensus 38 nL~~kNRDrFTQNLs~FRrdvr~~l 62 (78)
-+.+.|++.|..|+..|...+..+-
T Consensus 137 ~~dP~~~~~y~~n~~~~~~~l~~l~ 161 (286)
T d1psza_ 137 AKDPNNKEFYEKNLKEYTDKLDKLD 161 (286)
T ss_dssp HHCGGGHHHHHHHHHHHHHHHHHHH
T ss_pred HhCccchHHHHHHHHHHHhHHHHHH
Confidence 4678999999999999999887653
No 20
>d1bgfa_ a.90.1.1 (A:) Transcription factor STAT-4 N-domain {Mouse (Mus musculus) [TaxId: 10090]}
Probab=23.66 E-value=63 Score=19.60 Aligned_cols=30 Identities=13% Similarity=0.297 Sum_probs=20.8
Q ss_pred HHHhhcCC----chhHHHHHHHHHHHHHHhhhhc
Q psy53 10 ENIVRGQP----PDKQASMVQWFENLMNSIERNL 39 (78)
Q Consensus 10 ~~li~sQp----~ekq~~l~~~F~~LM~gIe~nL 39 (78)
+.-|.+|+ +........+|.+|+..++.-+
T Consensus 36 A~WIE~Q~W~~~~~de~~a~~l~~~ll~~L~~q~ 69 (124)
T d1bgfa_ 36 AQWIETQDWEVASNNETMATILLQNLLIQLDEQL 69 (124)
T ss_dssp HHHHHHSCHHHHTTCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhCCcccccCCHHHHHHHHHHHHHHHHHHH
Confidence 45566666 3345677888888888887654
No 21
>d2i8da1 d.198.4.1 (A:2-122) Uncharacterized protein LSEI2283 {Lactobacillus casei [TaxId: 1582]}
Probab=21.81 E-value=41 Score=19.65 Aligned_cols=25 Identities=20% Similarity=0.368 Sum_probs=18.4
Q ss_pred HHHhhcCC-chhHHHHHHHHHHHHHH
Q psy53 10 ENIVRGQP-PDKQASMVQWFENLMNS 34 (78)
Q Consensus 10 ~~li~sQp-~ekq~~l~~~F~~LM~g 34 (78)
+..+.+.| |+++..|..+++-..+-
T Consensus 4 ~ey~~~~p~P~~r~~l~~Lr~~I~~~ 29 (121)
T d2i8da1 4 AEWYQRIPTPDDLTRVESLFANMQAQ 29 (121)
T ss_dssp HHHHTTSSSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhCCCHHHHHHHHHHHHHHHHH
Confidence 35678888 78888888887765543
No 22
>d1fkma1 a.69.2.1 (A:249-442) Ypt/Rab-GAP domain of gyp1p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=21.53 E-value=20 Score=22.05 Aligned_cols=12 Identities=25% Similarity=0.473 Sum_probs=10.1
Q ss_pred HHHHHHHHhhhh
Q psy53 27 WFENLMNSIERN 38 (78)
Q Consensus 27 ~F~~LM~gIe~n 38 (78)
||.+||++|..|
T Consensus 180 ~f~~lm~~i~d~ 191 (194)
T d1fkma1 180 CLTKLLEQITDN 191 (194)
T ss_dssp HHHHHHGGGGGG
T ss_pred HHHHHHHhhhcc
Confidence 899999998654
No 23
>d2p5ka1 a.4.5.3 (A:2-64) Arginine repressor (ArgR), N-terminal DNA-binding domain {Bacillus subtilis [TaxId: 1423]}
Probab=21.40 E-value=15 Score=20.18 Aligned_cols=34 Identities=18% Similarity=0.250 Sum_probs=25.9
Q ss_pred HHHhhcCCchhHHHHHHHHHHHHHHhhhhcccchhh
Q psy53 10 ENIVRGQPPDKQASMVQWFENLMNSIERNLLTKNRD 45 (78)
Q Consensus 10 ~~li~sQp~ekq~~l~~~F~~LM~gIe~nL~~kNRD 45 (78)
..||.+.+...|+.+.....+- ||+-+-.+-.||
T Consensus 10 ~~li~~~~i~tQ~eL~~~L~~~--G~~vTQaTlSRD 43 (63)
T d2p5ka1 10 REIITSNEIETQDELVDMLKQD--GYKVTQATVSRD 43 (63)
T ss_dssp HHHHHHSCCCSHHHHHHHHHHT--TCCCCHHHHHHH
T ss_pred HHHHHhCCCCCHHHHHHHHHHc--CCCeeHHHHHHH
Confidence 3588999999999999988886 777555554444
Done!