RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy53
         (78 letters)



>d2bbha1 d.328.1.1 (A:13-244) Magnesium transport protein CorA,
           soluble domain {Thermotoga maritima [TaxId: 2336]}
          Length = 232

 Score = 24.3 bits (52), Expect = 1.6
 Identities = 5/40 (12%), Positives = 18/40 (45%)

Query: 19  DKQASMVQWFENLMNSIERNLLTKNRDRFTQNLSMFRRDI 58
           D    +++  ++ ++ +E  +L +      Q     +R++
Sbjct: 167 DDYFVLLEKIDDEIDVLEEEVLERPEKETVQRTHQLKRNL 206


>d1cg2a1 c.56.5.4 (A:26-213,A:327-414) Carboxypeptidase G2,
          catalytic domain {Pseudomonas sp., strain rs-16 [TaxId:
          306]}
          Length = 276

 Score = 24.1 bits (51), Expect = 2.4
 Identities = 7/34 (20%), Positives = 18/34 (52%), Gaps = 2/34 (5%)

Query: 7  QLRENIVRGQPPDKQASMVQWFENL--MNSIERN 38
          Q R+N++     D+Q ++++  E L  + +   +
Sbjct: 1  QKRDNVLFQAATDEQPAVIKTLEKLVNIETGTGD 34


>d1aisb2 a.74.1.2 (B:1206-1300) Transcription factor IIB (TFIIB),
          core domain {Archaeon Pyrococcus woesei [TaxId: 2262]}
          Length = 95

 Score = 22.1 bits (47), Expect = 8.7
 Identities = 5/39 (12%), Positives = 15/39 (38%)

Query: 1  MDIYFNQLRENIVRGQPPDKQASMVQWFENLMNSIERNL 39
          ++I     +  +  G+ P    +   +  +L+   +R  
Sbjct: 25 IEILDEAYKRGLTSGKSPAGLVAAALYIASLLEGEKRTQ 63


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.319    0.131    0.382 

Gapped
Lambda     K      H
   0.267   0.0515    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 269,890
Number of extensions: 9150
Number of successful extensions: 22
Number of sequences better than 10.0: 1
Number of HSP's gapped: 22
Number of HSP's successfully gapped: 5
Length of query: 78
Length of database: 2,407,596
Length adjustment: 45
Effective length of query: 33
Effective length of database: 1,789,746
Effective search space: 59061618
Effective search space used: 59061618
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 47 (22.4 bits)