BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy5300
(177 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2Y00|A Chain A, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Partial Agonist Dobutamine (Crystal
Dob92)
pdb|2Y00|B Chain B, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Partial Agonist Dobutamine (Crystal
Dob92)
pdb|2Y01|A Chain A, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Partial Agonist Dobutamine (Crystal
Dob102)
pdb|2Y01|B Chain B, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Partial Agonist Dobutamine (Crystal
Dob102)
pdb|2Y02|A Chain A, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Agonist Carmoterol
pdb|2Y02|B Chain B, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Agonist Carmoterol
pdb|2Y03|A Chain A, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Agonist Isoprenaline
pdb|2Y03|B Chain B, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Agonist Isoprenaline
pdb|2Y04|A Chain A, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Partial Agonist Salbutamol
pdb|2Y04|B Chain B, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Partial Agonist Salbutamol
pdb|4AMI|A Chain A, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Biased Agonist Bucindolol
pdb|4AMI|B Chain B, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Biased Agonist Bucindolol
pdb|4AMJ|A Chain A, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Biased Agonist Carvedilol
pdb|4AMJ|B Chain B, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Biased Agonist Carvedilol
Length = 315
Score = 48.9 bits (115), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 39/123 (31%), Positives = 56/123 (45%), Gaps = 9/123 (7%)
Query: 51 GNVLTIISIRKNRVHRGLRQHSWNGVYTLILHLSVADLFVTVFCLAGEAVWSYTVEWLWG 110
GNVL I +I G Q I L+ ADL V + + A WLWG
Sbjct: 28 GNVLVIAAI-------GSTQRLQTLTNLFITSLACADLVVGLLVVPFGATLVVRGTWLWG 80
Query: 111 NMSCKLFKFLQMFSLYLSTFILVLIGIDRFLAVRYPMK--SISTSSRCCKFVIGAWILSA 168
+ C+L+ L + + S L +I IDR+LA+ P + S+ T +R + W +SA
Sbjct: 81 SFLCELWTSLDVLCVTASIETLCVIAIDRYLAITSPFRYQSLMTRARAKVIICTVWAISA 140
Query: 169 LCS 171
L S
Sbjct: 141 LVS 143
>pdb|2VT4|A Chain A, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Cyanopindolol
pdb|2VT4|B Chain B, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Cyanopindolol
pdb|2VT4|C Chain C, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Cyanopindolol
pdb|2VT4|D Chain D, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Cyanopindolol
pdb|2YCW|A Chain A, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Antagonist Carazolol
pdb|2YCW|B Chain B, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Antagonist Carazolol
pdb|2YCX|A Chain A, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Antagonist Cyanopindolol
pdb|2YCX|B Chain B, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Antagonist Cyanopindolol
pdb|2YCZ|A Chain A, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Antagonist Iodocyanopindolol
pdb|2YCZ|B Chain B, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Antagonist Iodocyanopindolol
pdb|2YCY|A Chain A, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Antagonist Cyanopindolol
pdb|2YCY|B Chain B, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Antagonist Cyanopindolol
pdb|4GPO|A Chain A, Oligomeic Turkey Beta1-adrenergic G Protein-coupled
Receptor
pdb|4GPO|B Chain B, Oligomeic Turkey Beta1-adrenergic G Protein-coupled
Receptor
Length = 313
Score = 48.9 bits (115), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 39/123 (31%), Positives = 56/123 (45%), Gaps = 9/123 (7%)
Query: 51 GNVLTIISIRKNRVHRGLRQHSWNGVYTLILHLSVADLFVTVFCLAGEAVWSYTVEWLWG 110
GNVL I +I G Q I L+ ADL V + + A WLWG
Sbjct: 28 GNVLVIAAI-------GSTQRLQTLTNLFITSLACADLVVGLLVVPFGATLVVRGTWLWG 80
Query: 111 NMSCKLFKFLQMFSLYLSTFILVLIGIDRFLAVRYPMK--SISTSSRCCKFVIGAWILSA 168
+ C+L+ L + + S L +I IDR+LA+ P + S+ T +R + W +SA
Sbjct: 81 SFLCELWTSLDVLCVTASIETLCVIAIDRYLAITSPFRYQSLMTRARAKVIICTVWAISA 140
Query: 169 LCS 171
L S
Sbjct: 141 LVS 143
>pdb|3OE0|A Chain A, Crystal Structure Of The Cxcr4 Chemokine Receptor In
Complex With A Cyclic Peptide Antagonist Cvx15
pdb|3OE9|A Chain A, Crystal Structure Of The Chemokine Cxcr4 Receptor In
Complex With A Small Molecule Antagonist It1t In P1
Spacegroup
pdb|3OE9|B Chain B, Crystal Structure Of The Chemokine Cxcr4 Receptor In
Complex With A Small Molecule Antagonist It1t In P1
Spacegroup
Length = 499
Score = 48.5 bits (114), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 34/98 (34%), Positives = 50/98 (51%), Gaps = 8/98 (8%)
Query: 81 LHLSVADLF--VTVFCLAGEAVWSYTVEWLWGNMSCKLFKFLQMFSLYLSTFILVLIGID 138
LHLSVADL +T+ A +AV W +GN CK + +LY S +IL I +D
Sbjct: 88 LHLSVADLLFVITLPFWAVDAV----ANWYFGNFLCKAVHVIYTVNLYSSVWILAFISLD 143
Query: 139 RFLAVRYPMKSISTSSRCCKFV--IGAWILSALCSLPQ 174
R+LA+ + S + V +G WI + L ++P
Sbjct: 144 RYLAIVHATNSQRPRKLLAEKVVYVGVWIPALLLTIPD 181
>pdb|3ODU|A Chain A, The 2.5 A Structure Of The Cxcr4 Chemokine Receptor In
Complex With Small Molecule Antagonist It1t
pdb|3ODU|B Chain B, The 2.5 A Structure Of The Cxcr4 Chemokine Receptor In
Complex With Small Molecule Antagonist It1t
pdb|3OE8|A Chain A, Crystal Structure Of The Cxcr4 Chemokine Receptor In
Complex With A Small Molecule Antagonist It1t In P1
Spacegroup
pdb|3OE8|B Chain B, Crystal Structure Of The Cxcr4 Chemokine Receptor In
Complex With A Small Molecule Antagonist It1t In P1
Spacegroup
pdb|3OE8|C Chain C, Crystal Structure Of The Cxcr4 Chemokine Receptor In
Complex With A Small Molecule Antagonist It1t In P1
Spacegroup
Length = 502
Score = 48.5 bits (114), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 34/98 (34%), Positives = 50/98 (51%), Gaps = 8/98 (8%)
Query: 81 LHLSVADLF--VTVFCLAGEAVWSYTVEWLWGNMSCKLFKFLQMFSLYLSTFILVLIGID 138
LHLSVADL +T+ A +AV W +GN CK + +LY S +IL I +D
Sbjct: 88 LHLSVADLLFVITLPFWAVDAV----ANWYFGNFLCKAVHVIYTVNLYSSVWILAFISLD 143
Query: 139 RFLAVRYPMKSISTSSRCCKFV--IGAWILSALCSLPQ 174
R+LA+ + S + V +G WI + L ++P
Sbjct: 144 RYLAIVHATNSQRPRKLLAEKVVYVGVWIPALLLTIPD 181
>pdb|3OE6|A Chain A, Crystal Structure Of The Cxcr4 Chemokine Receptor In
Complex With A Small Molecule Antagonist It1t In I222
Spacegroup
Length = 508
Score = 48.1 bits (113), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 34/98 (34%), Positives = 50/98 (51%), Gaps = 8/98 (8%)
Query: 81 LHLSVADLF--VTVFCLAGEAVWSYTVEWLWGNMSCKLFKFLQMFSLYLSTFILVLIGID 138
LHLSVADL +T+ A +AV W +GN CK + +LY S +IL I +D
Sbjct: 88 LHLSVADLLFVITLPFWAVDAV----ANWYFGNFLCKAVHVIYTVNLYSSVWILAFISLD 143
Query: 139 RFLAVRYPMKSISTSSRCCKFV--IGAWILSALCSLPQ 174
R+LA+ + S + V +G WI + L ++P
Sbjct: 144 RYLAIVHATNSQRPRKLLAEKVVYVGVWIPALLLTIPD 181
>pdb|4DKL|A Chain A, Crystal Structure Of The Mu-Opioid Receptor Bound To A
Morphinan Antagonist
Length = 464
Score = 47.0 bits (110), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 30/96 (31%), Positives = 54/96 (56%), Gaps = 3/96 (3%)
Query: 80 ILHLSVADLFVTVFCLAGEAVWSYTVEWLWGNMSCKLFKFLQMFSLYLSTFILVLIGIDR 139
I +L++AD T L ++V W +GN+ CK+ + ++++ S F L + +DR
Sbjct: 56 IFNLALADALATS-TLPFQSVNYLMGTWPFGNILCKIVISIDYYNMFTSIFTLCTMSVDR 114
Query: 140 FLAVRYPMKSIS-TSSRCCKFV-IGAWILSALCSLP 173
++AV +P+K++ + R K V + WILS+ LP
Sbjct: 115 YIAVCHPVKALDFRTPRNAKIVNVCNWILSSAIGLP 150
>pdb|3RZE|A Chain A, Structure Of The Human Histamine H1 Receptor In Complex
With Doxepin
Length = 452
Score = 46.6 bits (109), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 34/127 (26%), Positives = 63/127 (49%), Gaps = 9/127 (7%)
Query: 52 NVLTIISIRKNRVHRGLRQHSWNGVYTLILHLSVADLFVTVFCLAGEAVWSYTVEWLWGN 111
N+L + ++R R + H+ +Y I+ LSVADL V + ++ +W G
Sbjct: 26 NLLVLYAVRSER-----KLHTVGNLY--IVSLSVADLIVGAVVMPMNILYLLMSKWSLGR 78
Query: 112 MSCKLFKFLQMFSLYLSTFILVLIGIDRFLAVRYPMKSIS--TSSRCCKFVIGAWILSAL 169
C + + + S F + ++ IDR+ +V+ P++ + T +R ++GAW LS L
Sbjct: 79 PLCLFWLSMDYVASTASIFSVFILCIDRYRSVQQPLRYLKYRTKTRASATILGAWFLSFL 138
Query: 170 CSLPQIG 176
+P +G
Sbjct: 139 WVIPILG 145
>pdb|3VW7|A Chain A, Crystal Structure Of Human Protease-Activated Receptor 1
(Par1) Bound With Antagonist Vorapaxar At 2.2 Angstrom
Length = 484
Score = 46.6 bits (109), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 28/73 (38%), Positives = 44/73 (60%), Gaps = 2/73 (2%)
Query: 80 ILHLSVAD-LFVTVFCLAGEAVWSYTVEWLWGNMSCKLFKFLQMFSLYLSTFILVLIGID 138
+LHL+ AD LFV+V +S + +W +G+ C+ ++Y S ++ +I ID
Sbjct: 59 MLHLATADVLFVSVLPFKISYYFSGS-DWQFGSELCRFVTAAFYCNMYASILLMTVISID 117
Query: 139 RFLAVRYPMKSIS 151
RFLAV YPM+S+S
Sbjct: 118 RFLAVVYPMQSLS 130
>pdb|4EA3|A Chain A, Structure Of The NOFQ OPIOID RECEPTOR IN COMPLEX WITH A
PEPTIDE Mimetic
pdb|4EA3|B Chain B, Structure Of The NOFQ OPIOID RECEPTOR IN COMPLEX WITH A
PEPTIDE Mimetic
Length = 434
Score = 45.8 bits (107), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 19/69 (27%), Positives = 41/69 (59%), Gaps = 2/69 (2%)
Query: 107 WLWGNMSCKLFKFLQMFSLYLSTFILVLIGIDRFLAVRYPMKSIS--TSSRCCKFVIGAW 164
W +GN CK + ++++ STF L + +DR++A+ +P++++ TSS+ + W
Sbjct: 190 WPFGNALCKTVIAIDYYNMFTSTFTLTAMSVDRYVAICHPIRALDVRTSSKAQAVNVAIW 249
Query: 165 ILSALCSLP 173
L+++ +P
Sbjct: 250 ALASVVGVP 258
>pdb|4DAJ|A Chain A, Structure Of The M3 Muscarinic Acetylcholine Receptor
pdb|4DAJ|B Chain B, Structure Of The M3 Muscarinic Acetylcholine Receptor
pdb|4DAJ|C Chain C, Structure Of The M3 Muscarinic Acetylcholine Receptor
pdb|4DAJ|D Chain D, Structure Of The M3 Muscarinic Acetylcholine Receptor
Length = 479
Score = 43.9 bits (102), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 29/128 (22%), Positives = 61/128 (47%), Gaps = 9/128 (7%)
Query: 50 VGNVLTIISIRKNRVHRGLRQHSWNGVYTLILHLSVADLFVTVFCLAGEAVWSYTVEWLW 109
+GN+L I++ + N+ + + + +L L+ ADL + V + + W
Sbjct: 28 IGNILVIVAFKVNKQLKTVNNY-------FLLSLACADLIIGVISMNLFTTYIIMNRWAL 80
Query: 110 GNMSCKLFKFLQMFSLYLSTFILVLIGIDRFLAVRYPM--KSISTSSRCCKFVIGAWILS 167
GN++C L+ + + S L++I DR+ ++ P+ ++ T+ R + AW++S
Sbjct: 81 GNLACDLWLSIDYVASNASVMNLLVISFDRYFSITRPLTYRAKRTTKRAGVMIGLAWVIS 140
Query: 168 ALCSLPQI 175
+ P I
Sbjct: 141 FVLWAPAI 148
>pdb|4GRV|A Chain A, The Crystal Structure Of The Neurotensin Receptor Nts1 In
Complex With Neurotensin (8-13)
Length = 510
Score = 43.5 bits (101), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 21/73 (28%), Positives = 41/73 (56%), Gaps = 2/73 (2%)
Query: 107 WLWGNMSCKLFKFLQMFSLYLSTFILVLIGIDRFLAVRYPM--KSISTSSRCCKFVIGAW 164
W +G+ C+ + FL+ Y + + + + R+LA+ +P K++ + SR KF+ W
Sbjct: 103 WAFGDAGCRGYYFLRDACTYATALNVASLSVARYLAICHPFKAKTLMSRSRTKKFISAIW 162
Query: 165 ILSALCSLPQIGT 177
+ SAL ++P + T
Sbjct: 163 LASALLAIPMLFT 175
>pdb|2LNL|A Chain A, Structure Of Human Cxcr1 In Phospholipid Bilayers
Length = 296
Score = 43.5 bits (101), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 22/68 (32%), Positives = 37/68 (54%), Gaps = 1/68 (1%)
Query: 107 WLWGNMSCKLFKFLQMFSLYLSTFILVLIGIDRFLAVRYPMKSISTSSRCCKFV-IGAWI 165
W++G CK+ L+ + Y +L I +DR+LA+ + ++++ KFV +G W
Sbjct: 75 WIFGTFLCKVVSLLKEVNFYSGILLLACISVDRYLAIVHATRTLTQKRHLVKFVCLGCWG 134
Query: 166 LSALCSLP 173
LS SLP
Sbjct: 135 LSMNLSLP 142
>pdb|3UON|A Chain A, Structure Of The Human M2 Muscarinic Acetylcholine
Receptor Bound To An Antagonist
Length = 467
Score = 42.7 bits (99), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 34/130 (26%), Positives = 59/130 (45%), Gaps = 13/130 (10%)
Query: 50 VGNVLTIISIRKNRVHRGLRQHSWNGVYTLILHLSVADLFVTVFCLAGEAVWSYTVEWLW 109
+GN+L ++SI+ NR + + + + L+ ADL + VF + +++ W
Sbjct: 39 IGNILVMVSIKVNRHLQTVNNY-------FLFSLACADLIIGVFSMNLYTLYTVIGYWPL 91
Query: 110 GNMSCKLFKFLQMFSLYLSTFILVLIGIDRFLAV----RYPMKSISTSSRCCKFVIGAWI 165
G + C L+ L S L++I DR+ V YP+K T+ + AW+
Sbjct: 92 GPVVCDLWLALDYVVSNASVMNLLIISFDRYFCVTKPLTYPVK--RTTKMAGMMIAAAWV 149
Query: 166 LSALCSLPQI 175
LS + P I
Sbjct: 150 LSFILWAPAI 159
>pdb|4EJ4|A Chain A, Structure Of The Delta Opioid Receptor Bound To
Naltrindole
Length = 461
Score = 42.4 bits (98), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 33/128 (25%), Positives = 64/128 (50%), Gaps = 12/128 (9%)
Query: 49 FVGNVLTIISIRKNRVHRGLRQHSWNGVYTLILHLSVADLFVTVFCLAGEAVWSYTVE-W 107
+GNVL + I R + + +Y I +L++AD T A Y +E W
Sbjct: 29 LLGNVLVMFGI-----VRYTKLKTATNIY--IFNLALADALATSTLPFQSA--KYLMETW 79
Query: 108 LWGNMSCKLFKFLQMFSLYLSTFILVLIGIDRFLAVRYPMKSIS--TSSRCCKFVIGAWI 165
+G + CK + ++++ S F L ++ +DR++AV +P+K++ T ++ I W+
Sbjct: 80 PFGELLCKAVLSIDYYNMFTSIFTLTMMSVDRYIAVCHPVKALDFRTPAKAKLINICIWV 139
Query: 166 LSALCSLP 173
L++ +P
Sbjct: 140 LASGVGVP 147
>pdb|2KS9|A Chain A, Solution Conformation Of Substance P In Water Complexed
With Nk1r
pdb|2KSA|A Chain A, Substance P In DmpcCHAPS ISOTROPIC Q0.25 BICELLES AS A
LIGAND FOR Nk1r
pdb|2KSB|A Chain A, Substance P In Isotropic Q0.25 DmpcCHAPSGM1 BICELLES AS A
LIGAND For Nk1r
Length = 364
Score = 42.4 bits (98), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 23/97 (23%), Positives = 49/97 (50%), Gaps = 2/97 (2%)
Query: 79 LILHLSVADLFVTVFCLAGEAVWSYTVEWLWGNMSCKLFKFLQMFSLYLSTFILVLIGID 138
+++L+ A+ + F ++ EW +G CK F + +++ S + + + D
Sbjct: 70 FLVNLAFAEASMAAFNTVVNFTYAVHNEWYYGLFYCKFHNFFPIAAVFASIYSMTAVAFD 129
Query: 139 RFLAVRYPMKSISTSSRCCKFVIGA-WILSALCSLPQ 174
R++A+ +P++ S+ K VI W+L+ L + PQ
Sbjct: 130 RYMAIIHPLQP-RLSATATKVVICVIWVLALLLAFPQ 165
>pdb|4GBR|A Chain A, N-terminal T4 Lysozyme Fusion Facilitates Crystallization
Of A G Protein Coupled Receptor
Length = 309
Score = 42.0 bits (97), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 35/126 (27%), Positives = 59/126 (46%), Gaps = 10/126 (7%)
Query: 51 GNVLTIISIRKNRVHRGLRQHSWNGVYTLILHLSVADLFVTVFCLAGEAVWSYTVEWLWG 110
GNVL I +I K + + + I L+ ADL + + + A T W +G
Sbjct: 22 GNVLVITAIAKFERLQTVTNY-------FITSLACADLVMGLAVVPFGAAHILTKTWTFG 74
Query: 111 NMSCKLFKFLQMFSLYLSTFILVLIGIDRFLAVRYPMK--SISTSSRCCKFVIGAWILSA 168
N C+ + + + + S L +I +DR+ A+ P K S+ T ++ ++ WI+S
Sbjct: 75 NFWCEFWTSIDVLCVTASIETLCVIAVDRYFAITSPFKYQSLLTKNKARVIILMVWIVSG 134
Query: 169 LCS-LP 173
L S LP
Sbjct: 135 LTSFLP 140
>pdb|3SN6|R Chain R, Crystal Structure Of The Beta2 Adrenergic Receptor-Gs
Protein Complex
Length = 514
Score = 41.6 bits (96), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 35/126 (27%), Positives = 59/126 (46%), Gaps = 10/126 (7%)
Query: 51 GNVLTIISIRKNRVHRGLRQHSWNGVYTLILHLSVADLFVTVFCLAGEAVWSYTVEWLWG 110
GNVL I +I K + + + I L+ ADL + + + A T W +G
Sbjct: 199 GNVLVITAIAKFERLQTVTNY-------FITSLACADLVMGLAVVPFGAAHILTKTWTFG 251
Query: 111 NMSCKLFKFLQMFSLYLSTFILVLIGIDRFLAVRYPMK--SISTSSRCCKFVIGAWILSA 168
N C+ + + + + S L +I +DR+ A+ P K S+ T ++ ++ WI+S
Sbjct: 252 NFWCEFWTSIDVLCVTASIETLCVIAVDRYFAITSPFKYQSLLTKNKARVIILMVWIVSG 311
Query: 169 LCS-LP 173
L S LP
Sbjct: 312 LTSFLP 317
>pdb|4DJH|A Chain A, Structure Of The Human Kappa Opioid Receptor In Complex
With Jdtic
pdb|4DJH|B Chain B, Structure Of The Human Kappa Opioid Receptor In Complex
With Jdtic
Length = 480
Score = 41.2 bits (95), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 26/98 (26%), Positives = 52/98 (53%), Gaps = 3/98 (3%)
Query: 80 ILHLSVADLFVTVFCLAGEAVWSYTVEWLWGNMSCKLFKFLQMFSLYLSTFILVLIGIDR 139
I +L++AD VT V+ W +G++ CK+ + ++++ S F L ++ +DR
Sbjct: 61 IFNLALADALVTTTMPFQSTVYLMN-SWPFGDVLCKIVLSIDYYNMFTSIFTLTMMSVDR 119
Query: 140 FLAVRYPMKSIS--TSSRCCKFVIGAWILSALCSLPQI 175
++AV +P+K++ T + I W+LS+ + I
Sbjct: 120 YIAVCHPVKALDFRTPLKAKIINICIWLLSSSVGISAI 157
>pdb|3D4S|A Chain A, Cholesterol Bound Form Of Human Beta2 Adrenergic Receptor.
pdb|3NY8|A Chain A, Crystal Structure Of The Human Beta2 Adrenergic Receptor
In Complex With The Inverse Agonist Ici 118,551
pdb|3NY9|A Chain A, Crystal Structure Of The Human Beta2 Adrenergic Receptor
In Complex With A Novel Inverse Agonist
pdb|3NYA|A Chain A, Crystal Structure Of The Human Beta2 Adrenergic Receptor
In Complex With The Neutral Antagonist Alprenolol
Length = 490
Score = 40.0 bits (92), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 34/126 (26%), Positives = 59/126 (46%), Gaps = 10/126 (7%)
Query: 51 GNVLTIISIRKNRVHRGLRQHSWNGVYTLILHLSVADLFVTVFCLAGEAVWSYTVEWLWG 110
GNVL I +I K + + + I L+ ADL + + + A W +G
Sbjct: 58 GNVLVITAIAKFERLQTVTNY-------FITSLACADLVMGLAVVPFGAAHILMKMWTFG 110
Query: 111 NMSCKLFKFLQMFSLYLSTFILVLIGIDRFLAVRYPMK--SISTSSRCCKFVIGAWILSA 168
N C+ + + + + S + L +I +DR+ A+ P K S+ T ++ ++ WI+S
Sbjct: 111 NFWCEFWTSIDVLCVTASIWTLCVIAVDRYFAITSPFKYQSLLTKNKARVIILMVWIVSG 170
Query: 169 LCS-LP 173
L S LP
Sbjct: 171 LTSFLP 176
>pdb|2R4S|A Chain A, Crystal Structure Of The Human Beta2 Adrenoceptor
Length = 342
Score = 39.3 bits (90), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 34/126 (26%), Positives = 58/126 (46%), Gaps = 10/126 (7%)
Query: 51 GNVLTIISIRKNRVHRGLRQHSWNGVYTLILHLSVADLFVTVFCLAGEAVWSYTVEWLWG 110
GNVL I +I K + + + I L+ ADL + + + A W +G
Sbjct: 27 GNVLVITAIAKFERLQTVTNY-------FITSLACADLVMGLAVVPFGAAHILMKMWTFG 79
Query: 111 NMSCKLFKFLQMFSLYLSTFILVLIGIDRFLAVRYPMK--SISTSSRCCKFVIGAWILSA 168
N C+ + + + + S L +I +DR+ A+ P K S+ T ++ ++ WI+S
Sbjct: 80 NFWCEFWTSIDVLCVTASIETLCVIAVDRYFAITSPFKYQSLLTKNKARVIILMVWIVSG 139
Query: 169 LCS-LP 173
L S LP
Sbjct: 140 LTSFLP 145
>pdb|3KJ6|A Chain A, Crystal Structure Of A Methylated Beta2 Adrenergic
Receptor- Fab Complex
Length = 366
Score = 39.3 bits (90), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 34/126 (26%), Positives = 58/126 (46%), Gaps = 10/126 (7%)
Query: 51 GNVLTIISIRKNRVHRGLRQHSWNGVYTLILHLSVADLFVTVFCLAGEAVWSYTVEWLWG 110
GNVL I +I K + + + I L+ ADL + + + A W +G
Sbjct: 51 GNVLVITAIAKFERLQTVTNY-------FITSLACADLVMGLAVVPFGAAHILMKMWTFG 103
Query: 111 NMSCKLFKFLQMFSLYLSTFILVLIGIDRFLAVRYPMK--SISTSSRCCKFVIGAWILSA 168
N C+ + + + + S L +I +DR+ A+ P K S+ T ++ ++ WI+S
Sbjct: 104 NFWCEFWTSIDVLCVTASIETLCVIAVDRYFAITSPFKYQSLLTKNKARVIILMVWIVSG 163
Query: 169 LCS-LP 173
L S LP
Sbjct: 164 LTSFLP 169
>pdb|2R4R|A Chain A, Crystal Structure Of The Human Beta2 Adrenoceptor
Length = 365
Score = 39.3 bits (90), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 34/126 (26%), Positives = 58/126 (46%), Gaps = 10/126 (7%)
Query: 51 GNVLTIISIRKNRVHRGLRQHSWNGVYTLILHLSVADLFVTVFCLAGEAVWSYTVEWLWG 110
GNVL I +I K + + + I L+ ADL + + + A W +G
Sbjct: 50 GNVLVITAIAKFERLQTVTNY-------FITSLACADLVMGLAVVPFGAAHILMKMWTFG 102
Query: 111 NMSCKLFKFLQMFSLYLSTFILVLIGIDRFLAVRYPMK--SISTSSRCCKFVIGAWILSA 168
N C+ + + + + S L +I +DR+ A+ P K S+ T ++ ++ WI+S
Sbjct: 103 NFWCEFWTSIDVLCVTASIETLCVIAVDRYFAITSPFKYQSLLTKNKARVIILMVWIVSG 162
Query: 169 LCS-LP 173
L S LP
Sbjct: 163 LTSFLP 168
>pdb|3P0G|A Chain A, Structure Of A Nanobody-Stabilized Active State Of The
Beta2 Adrenoceptor
Length = 501
Score = 38.9 bits (89), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 34/126 (26%), Positives = 58/126 (46%), Gaps = 10/126 (7%)
Query: 51 GNVLTIISIRKNRVHRGLRQHSWNGVYTLILHLSVADLFVTVFCLAGEAVWSYTVEWLWG 110
GNVL I +I K + + + I L+ ADL + + + A W +G
Sbjct: 58 GNVLVITAIAKFERLQTVTNY-------FITSLACADLVMGLAVVPFGAAHILMKMWTFG 110
Query: 111 NMSCKLFKFLQMFSLYLSTFILVLIGIDRFLAVRYPMK--SISTSSRCCKFVIGAWILSA 168
N C+ + + + + S L +I +DR+ A+ P K S+ T ++ ++ WI+S
Sbjct: 111 NFWCEFWTSIDVLCVTASIETLCVIAVDRYFAITSPFKYQSLLTKNKARVIILMVWIVSG 170
Query: 169 LCS-LP 173
L S LP
Sbjct: 171 LTSFLP 176
>pdb|2RH1|A Chain A, High Resolution Crystal Structure Of Human B2-Adrenergic G
Protein- Coupled Receptor
Length = 500
Score = 38.9 bits (89), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 34/126 (26%), Positives = 58/126 (46%), Gaps = 10/126 (7%)
Query: 51 GNVLTIISIRKNRVHRGLRQHSWNGVYTLILHLSVADLFVTVFCLAGEAVWSYTVEWLWG 110
GNVL I +I K + + + I L+ ADL + + + A W +G
Sbjct: 57 GNVLVITAIAKFERLQTVTNY-------FITSLACADLVMGLAVVPFGAAHILMKMWTFG 109
Query: 111 NMSCKLFKFLQMFSLYLSTFILVLIGIDRFLAVRYPMK--SISTSSRCCKFVIGAWILSA 168
N C+ + + + + S L +I +DR+ A+ P K S+ T ++ ++ WI+S
Sbjct: 110 NFWCEFWTSIDVLCVTASIETLCVIAVDRYFAITSPFKYQSLLTKNKARVIILMVWIVSG 169
Query: 169 LCS-LP 173
L S LP
Sbjct: 170 LTSFLP 175
>pdb|3PDS|A Chain A, Irreversible Agonist-Beta2 Adrenoceptor Complex
Length = 458
Score = 38.9 bits (89), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 34/126 (26%), Positives = 58/126 (46%), Gaps = 10/126 (7%)
Query: 51 GNVLTIISIRKNRVHRGLRQHSWNGVYTLILHLSVADLFVTVFCLAGEAVWSYTVEWLWG 110
GNVL I +I K + + + I L+ ADL + + + A W +G
Sbjct: 26 GNVLVITAIAKFERLQTVTNY-------FITSLACADLVMGLAVVPFGAACILMKMWTFG 78
Query: 111 NMSCKLFKFLQMFSLYLSTFILVLIGIDRFLAVRYPMK--SISTSSRCCKFVIGAWILSA 168
N C+ + + + + S L +I +DR+ A+ P K S+ T ++ ++ WI+S
Sbjct: 79 NFWCEFWTSIDVLCVTASIETLCVIAVDRYFAITSPFKYQSLLTKNKARVIILMVWIVSG 138
Query: 169 LCS-LP 173
L S LP
Sbjct: 139 LTSFLP 144
>pdb|2Z73|A Chain A, Crystal Structure Of Squid Rhodopsin
pdb|2Z73|B Chain B, Crystal Structure Of Squid Rhodopsin
pdb|3AYM|A Chain A, Crystal Structure Of The Batho Intermediate Of Squid
Rhodopsin
pdb|3AYM|B Chain B, Crystal Structure Of The Batho Intermediate Of Squid
Rhodopsin
pdb|3AYN|A Chain A, Crystal Structure Of Squid Isorhodopsin
pdb|3AYN|B Chain B, Crystal Structure Of Squid Isorhodopsin
Length = 448
Score = 33.9 bits (76), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 19/72 (26%), Positives = 37/72 (51%), Gaps = 2/72 (2%)
Query: 106 EWLWGNMSCKLFKFLQMFSLYLSTFILVLIGIDRFLAVRYPMKSISTSS--RCCKFVIGA 163
+W++G +CK++ F+ ++S + +I IDR+ + PM + S R +I
Sbjct: 100 KWIFGFAACKVYGFIGGIFGFMSIMTMAMISIDRYNVIGRPMAASKKMSHRRAFIMIIFV 159
Query: 164 WILSALCSLPQI 175
W+ S L ++ I
Sbjct: 160 WLWSVLWAIGPI 171
>pdb|3OAX|A Chain A, Crystal Structure Of Bovine Rhodopsin With Beta-Ionone
pdb|3OAX|B Chain B, Crystal Structure Of Bovine Rhodopsin With Beta-Ionone
pdb|1GZM|A Chain A, Structure Of Bovine Rhodopsin In A Trigonal Crystal Form
pdb|1GZM|B Chain B, Structure Of Bovine Rhodopsin In A Trigonal Crystal Form
pdb|1HZX|A Chain A, Crystal Structure Of Bovine Rhodopsin
pdb|1HZX|B Chain B, Crystal Structure Of Bovine Rhodopsin
pdb|2I36|A Chain A, Crystal Structure Of Trigonal Crystal Form Of Ground-State
Rhodopsin
pdb|2I36|B Chain B, Crystal Structure Of Trigonal Crystal Form Of Ground-State
Rhodopsin
pdb|2I36|C Chain C, Crystal Structure Of Trigonal Crystal Form Of Ground-State
Rhodopsin
pdb|2I35|A Chain A, Crystal Structure Of Rhombohedral Crystal Form Of
Ground-State Rhodopsin
pdb|2I37|A Chain A, Crystal Structure Of A Photoactivated Rhodopsin
pdb|2I37|B Chain B, Crystal Structure Of A Photoactivated Rhodopsin
pdb|2I37|C Chain C, Crystal Structure Of A Photoactivated Rhodopsin
pdb|2HPY|A Chain A, Crystallographic Model Of Lumirhodopsin
pdb|2HPY|B Chain B, Crystallographic Model Of Lumirhodopsin
pdb|2PED|A Chain A, Crystallographic Model Of 9-Cis-Rhodopsin
pdb|2PED|B Chain B, Crystallographic Model Of 9-Cis-Rhodopsin
pdb|2G87|A Chain A, Crystallographic Model Of Bathorhodopsin
pdb|2G87|B Chain B, Crystallographic Model Of Bathorhodopsin
pdb|1L9H|A Chain A, Crystal Structure Of Bovine Rhodopsin At 2.6 Angstroms
Resolution
pdb|1L9H|B Chain B, Crystal Structure Of Bovine Rhodopsin At 2.6 Angstroms
Resolution
pdb|1U19|A Chain A, Crystal Structure Of Bovine Rhodopsin At 2.2 Angstroms
Resolution
pdb|1U19|B Chain B, Crystal Structure Of Bovine Rhodopsin At 2.2 Angstroms
Resolution
Length = 349
Score = 33.9 bits (76), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 23/98 (23%), Positives = 46/98 (46%), Gaps = 1/98 (1%)
Query: 79 LILHLSVADLFVTVFCLAGEAVWSYTVEWLWGNMSCKLFKFLQMFSLYLSTFILVLIGID 138
++L+L+VADLF+ S +++G C L F ++ + LV++ I+
Sbjct: 76 ILLNLAVADLFMVFGGFTTTLYTSLHGYFVFGPTGCNLEGFFATLGGEIALWSLVVLAIE 135
Query: 139 RFLAVRYPMKSIS-TSSRCCKFVIGAWILSALCSLPQI 175
R++ V PM + + V W+++ C+ P +
Sbjct: 136 RYVVVCKPMSNFRFGENHAIMGVAFTWVMALACAAPPL 173
>pdb|1JFP|A Chain A, Structure Of Bovine Rhodopsin (Dark Adapted)
pdb|1LN6|A Chain A, Structure Of Bovine Rhodopsin (Metarhodopsin Ii)
pdb|3CAP|A Chain A, Crystal Structure Of Native Opsin: The G Protein-Coupled
Receptor Rhodopsin In Its Ligand-Free State
pdb|3CAP|B Chain B, Crystal Structure Of Native Opsin: The G Protein-Coupled
Receptor Rhodopsin In Its Ligand-Free State
pdb|3C9L|A Chain A, Structure Of Ground-State Bovine Rhodospin In A Hexagonal
Crystal Form
pdb|1F88|A Chain A, Crystal Structure Of Bovine Rhodopsin
pdb|1F88|B Chain B, Crystal Structure Of Bovine Rhodopsin
pdb|3DQB|A Chain A, Crystal Structure Of The Active G-protein-coupled Receptor
Opsin In Complex With A C-terminal Peptide Derived From
The Galpha Subunit Of Transducin
pdb|3PQR|A Chain A, Crystal Structure Of Metarhodopsin Ii In Complex With A
C-Terminal Peptide Derived From The Galpha Subunit Of
Transducin
pdb|3PXO|A Chain A, Crystal Structure Of Metarhodopsin Ii
Length = 348
Score = 33.9 bits (76), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 23/98 (23%), Positives = 46/98 (46%), Gaps = 1/98 (1%)
Query: 79 LILHLSVADLFVTVFCLAGEAVWSYTVEWLWGNMSCKLFKFLQMFSLYLSTFILVLIGID 138
++L+L+VADLF+ S +++G C L F ++ + LV++ I+
Sbjct: 75 ILLNLAVADLFMVFGGFTTTLYTSLHGYFVFGPTGCNLEGFFATLGGEIALWSLVVLAIE 134
Query: 139 RFLAVRYPMKSIS-TSSRCCKFVIGAWILSALCSLPQI 175
R++ V PM + + V W+++ C+ P +
Sbjct: 135 RYVVVCKPMSNFRFGENHAIMGVAFTWVMALACAAPPL 172
>pdb|4A4M|A Chain A, Crystal Structure Of The Light-Activated Constitutively
Active N2c,M257y,D282c Rhodopsin Mutant In Complex With
A Peptide Resembling The C-Terminus Of The
Galpha-Protein Subunit (Gact)
Length = 349
Score = 33.9 bits (76), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 26/112 (23%), Positives = 51/112 (45%), Gaps = 5/112 (4%)
Query: 65 HRGLRQHSWNGVYTLILHLSVADLFVTVFCLAGEAVWSYTVEWLWGNMSCKLFKFLQMFS 124
H+ LR + ++L+L+VADLF+ S +++G C L F
Sbjct: 66 HKKLR----TPLNYILLNLAVADLFMVFGGFTTTLYTSLHGYFVFGPTGCNLEGFFATLG 121
Query: 125 LYLSTFILVLIGIDRFLAVRYPMKSIS-TSSRCCKFVIGAWILSALCSLPQI 175
++ + LV++ I+R++ V PM + + V W+++ C+ P +
Sbjct: 122 GEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMGVAFTWVMALACAAPPL 173
>pdb|2J4Y|A Chain A, Crystal Structure Of A Rhodopsin Stabilizing Mutant
Expressed In Mammalian Cells
pdb|2J4Y|B Chain B, Crystal Structure Of A Rhodopsin Stabilizing Mutant
Expressed In Mammalian Cells
Length = 349
Score = 33.9 bits (76), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 26/112 (23%), Positives = 51/112 (45%), Gaps = 5/112 (4%)
Query: 65 HRGLRQHSWNGVYTLILHLSVADLFVTVFCLAGEAVWSYTVEWLWGNMSCKLFKFLQMFS 124
H+ LR + ++L+L+VADLF+ S +++G C L F
Sbjct: 66 HKKLR----TPLNYILLNLAVADLFMVFGGFTTTLYTSLHGYFVFGPTGCNLEGFFATLG 121
Query: 125 LYLSTFILVLIGIDRFLAVRYPMKSIS-TSSRCCKFVIGAWILSALCSLPQI 175
++ + LV++ I+R++ V PM + + V W+++ C+ P +
Sbjct: 122 GEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMGVAFTWVMALACAAPPL 173
>pdb|3C9M|A Chain A, Structure Of A Mutant Bovine Rhodopsin In Hexagonal
Crystal Form
Length = 348
Score = 33.9 bits (76), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 26/112 (23%), Positives = 51/112 (45%), Gaps = 5/112 (4%)
Query: 65 HRGLRQHSWNGVYTLILHLSVADLFVTVFCLAGEAVWSYTVEWLWGNMSCKLFKFLQMFS 124
H+ LR + ++L+L+VADLF+ S +++G C L F
Sbjct: 65 HKKLR----TPLNYILLNLAVADLFMVFGGFTTTLYTSLHGYFVFGPTGCNLEGFFATLG 120
Query: 125 LYLSTFILVLIGIDRFLAVRYPMKSIS-TSSRCCKFVIGAWILSALCSLPQI 175
++ + LV++ I+R++ V PM + + V W+++ C+ P +
Sbjct: 121 GEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMGVAFTWVMALACAAPPL 172
>pdb|2ZIY|A Chain A, Crystal Structure Of Squid Rhodopsin
Length = 372
Score = 33.9 bits (76), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 19/72 (26%), Positives = 37/72 (51%), Gaps = 2/72 (2%)
Query: 106 EWLWGNMSCKLFKFLQMFSLYLSTFILVLIGIDRFLAVRYPMKSISTSS--RCCKFVIGA 163
+W++G +CK++ F+ ++S + +I IDR+ + PM + S R +I
Sbjct: 99 KWIFGFAACKVYGFIGGIFGFMSIMTMAMISIDRYNVIGRPMAASKKMSHRRAFIMIIFV 158
Query: 164 WILSALCSLPQI 175
W+ S L ++ I
Sbjct: 159 WLWSVLWAIGPI 170
>pdb|2X72|A Chain A, Crystal Structure Of The Constitutively Active E113q,N2c,
D282c Rhodopsin Mutant With Bound Galphact Peptide
Length = 349
Score = 33.5 bits (75), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 26/112 (23%), Positives = 51/112 (45%), Gaps = 5/112 (4%)
Query: 65 HRGLRQHSWNGVYTLILHLSVADLFVTVFCLAGEAVWSYTVEWLWGNMSCKLFKFLQMFS 124
H+ LR + ++L+L+VADLF+ S +++G C L F
Sbjct: 66 HKKLR----TPLNYILLNLAVADLFMVFGGFTTTLYTSLHGYFVFGPTGCNLQGFFATLG 121
Query: 125 LYLSTFILVLIGIDRFLAVRYPMKSIS-TSSRCCKFVIGAWILSALCSLPQI 175
++ + LV++ I+R++ V PM + + V W+++ C+ P +
Sbjct: 122 GEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMGVAFTWVMALACAAPPL 173
>pdb|3EML|A Chain A, The 2.6 A Crystal Structure Of A Human A2a Adenosine
Receptor Bound To Zm241385.
pdb|3QAK|A Chain A, Agonist Bound Structure Of The Human Adenosine A2a
Receptor
Length = 488
Score = 32.0 bits (71), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 22/64 (34%), Positives = 35/64 (54%), Gaps = 6/64 (9%)
Query: 119 FLQMFSLYL---STFILVLIGIDRFLAVRYPMK--SISTSSRCCKFVIGAWILS-ALCSL 172
F+ F L L S F L+ I IDR++A+R P++ + T +R + W+LS A+
Sbjct: 94 FIACFVLVLTQSSIFSLLAIAIDRYIAIRIPLRYNGLVTGTRAKGIIAICWVLSFAIGLT 153
Query: 173 PQIG 176
P +G
Sbjct: 154 PMLG 157
>pdb|4EIY|A Chain A, Crystal Structure Of The Chimeric Protein Of A2aar-Bril In
Complex With Zm241385 At 1.8a Resolution
Length = 447
Score = 31.6 bits (70), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 22/64 (34%), Positives = 35/64 (54%), Gaps = 6/64 (9%)
Query: 119 FLQMFSLYL---STFILVLIGIDRFLAVRYPMK--SISTSSRCCKFVIGAWILS-ALCSL 172
F+ F L L S F L+ I IDR++A+R P++ + T +R + W+LS A+
Sbjct: 104 FIACFVLVLTQSSIFSLLAIAIDRYIAIRIPLRYNGLVTGTRAKGIIAICWVLSFAIGLT 163
Query: 173 PQIG 176
P +G
Sbjct: 164 PMLG 167
>pdb|2YDO|A Chain A, Thermostabilised Human A2a Receptor With Adenosine Bound
pdb|2YDV|A Chain A, Thermostabilised Human A2a Receptor With Neca Bound
Length = 325
Score = 31.2 bits (69), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 23/70 (32%), Positives = 37/70 (52%), Gaps = 6/70 (8%)
Query: 113 SCKLFKFLQMFSLYL---STFILVLIGIDRFLAVRYPMK--SISTSSRCCKFVIGAWILS 167
+C F+ F L L S F L+ I IDR++A+R P++ + T +R + W+LS
Sbjct: 73 ACHGCLFIACFVLVLTASSIFSLLAIAIDRYIAIRIPLRYNGLVTGTRAKGIIAICWVLS 132
Query: 168 -ALCSLPQIG 176
A+ P +G
Sbjct: 133 FAIGLTPMLG 142
>pdb|3VG9|A Chain A, Crystal Structure Of Human Adenosine A2a Receptor With An
Allosteric Inverse-Agonist Antibody At 2.7 A Resolution
pdb|3VGA|A Chain A, Crystal Structure Of Human Adenosine A2a Receptor With An
Allosteric Inverse-Agonist Antibody At 3.1 A Resolution
Length = 326
Score = 31.2 bits (69), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 23/70 (32%), Positives = 37/70 (52%), Gaps = 6/70 (8%)
Query: 113 SCKLFKFLQMFSLYL---STFILVLIGIDRFLAVRYPMK--SISTSSRCCKFVIGAWILS 167
+C F+ F L L S F L+ I IDR++A+R P++ + T +R + W+LS
Sbjct: 73 ACHGCLFIACFVLVLTQSSIFSLLAIAIDRYIAIRIPLRYNGLVTGTRAKGIIAICWVLS 132
Query: 168 -ALCSLPQIG 176
A+ P +G
Sbjct: 133 FAIGLTPMLG 142
>pdb|3PWH|A Chain A, Thermostabilised Adenosine A2a Receptor
pdb|3REY|A Chain A, Thermostabilised Adenosine A2a Receptor In Complex With
Xac
pdb|3RFM|A Chain A, Thermostabilised Adenosine A2a Receptor In Complex With
Caffeine
pdb|3UZA|A Chain A, Thermostabilised Adenosine A2a Receptor In Complex With
6-(2,6-
Dimethylpyridin-4-Yl)-5-Phenyl-1,2,4-Triazin-3-Amine
pdb|3UZC|A Chain A, Thermostabilised Adenosine A2a Receptor In Complex With
4-(3-Amino-5- Phenyl-1,2,4-Triazin-6-Yl)-2-Chlorophenol
Length = 329
Score = 29.6 bits (65), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 22/70 (31%), Positives = 36/70 (51%), Gaps = 6/70 (8%)
Query: 113 SCKLFKFLQMFSLYL---STFILVLIGIDRFLAVRYPMK--SISTSSRCCKFVIGAWILS 167
+C F+ F L L S F L+ I IDR++A+ P++ + T +R + W+LS
Sbjct: 73 ACHGCLFIACFVLVLAQSSIFSLLAIAIDRYIAIAIPLRYNGLVTGTRAAGIIAICWVLS 132
Query: 168 -ALCSLPQIG 176
A+ P +G
Sbjct: 133 FAIGLTPMLG 142
>pdb|1EZV|C Chain C, Structure Of The Yeast Cytochrome Bc1 Complex Co-
Crystallized With An Antibody Fv-Fragment
pdb|1KYO|C Chain C, Yeast Cytochrome Bc1 Complex With Bound Substrate
Cytochrome C
pdb|1KYO|N Chain N, Yeast Cytochrome Bc1 Complex With Bound Substrate
Cytochrome C
pdb|1KB9|C Chain C, Yeast Cytochrome Bc1 Complex
pdb|1P84|C Chain C, Hdbt Inhibited Yeast Cytochrome Bc1 Complex
pdb|2IBZ|C Chain C, Yeast Cytochrome Bc1 Complex With Stigmatellin
Length = 385
Score = 26.6 bits (57), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 27/98 (27%), Positives = 41/98 (41%), Gaps = 19/98 (19%)
Query: 65 HRGLRQHSWNGVYTLILHLSVADLFVTVFCLAGE-AVWSYTV----------------EW 107
+R R WN V +I L++A F+ C+ G+ + W TV W
Sbjct: 106 YRSPRVTLWN-VGVIIFTLTIATAFLGYCCVYGQMSHWGATVITNLFSAIPFVGNDIVSW 164
Query: 108 LWGNMSCKLFKFLQMFSL-YLSTFILVLIGIDRFLAVR 144
LWG S + F+L YL FI+ + I +A+
Sbjct: 165 LWGGFSVSNPTIQRFFALHYLVPFIIAAMVIMHLMALH 202
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.331 0.141 0.461
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,216,585
Number of Sequences: 62578
Number of extensions: 127514
Number of successful extensions: 275
Number of sequences better than 100.0: 40
Number of HSP's better than 100.0 without gapping: 31
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 237
Number of HSP's gapped (non-prelim): 41
length of query: 177
length of database: 14,973,337
effective HSP length: 92
effective length of query: 85
effective length of database: 9,216,161
effective search space: 783373685
effective search space used: 783373685
T: 11
A: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.9 bits)
S2: 48 (23.1 bits)