Query psy5300
Match_columns 177
No_of_seqs 121 out of 1524
Neff 9.4
Searched_HMMs 46136
Date Fri Aug 16 23:02:40 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy5300.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/5300hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4219|consensus 100.0 1.2E-28 2.6E-33 192.5 9.3 139 31-176 32-170 (423)
2 PHA03234 DNA packaging protein 99.9 1.5E-25 3.3E-30 177.5 14.4 157 10-176 9-167 (338)
3 PHA02834 chemokine receptor-li 99.9 6E-23 1.3E-27 162.0 15.0 134 33-176 27-161 (323)
4 PHA03235 DNA packaging protein 99.9 1.2E-22 2.5E-27 164.6 14.5 137 32-175 30-167 (409)
5 PHA03087 G protein-coupled che 99.9 3.5E-22 7.5E-27 158.2 14.9 137 31-176 37-175 (335)
6 PHA02638 CC chemokine receptor 99.9 1E-21 2.2E-26 159.7 15.3 134 33-176 97-232 (417)
7 KOG4220|consensus 99.9 5E-24 1.1E-28 166.9 0.2 138 33-177 29-168 (503)
8 PF00001 7tm_1: 7 transmembran 99.8 1.3E-20 2.8E-25 141.7 10.1 119 51-176 1-121 (257)
9 KOG2087|consensus 99.6 5.8E-15 1.3E-19 114.8 7.8 134 35-176 25-168 (363)
10 PF10320 7TM_GPCR_Srsx: Serpen 99.4 1.4E-13 3E-18 105.5 6.0 116 46-170 2-119 (257)
11 PF10328 7TM_GPCR_Srx: Serpent 99.3 4.6E-11 1E-15 92.3 10.5 123 44-173 3-128 (274)
12 PF10324 7TM_GPCR_Srw: Serpent 98.8 3E-08 6.5E-13 78.1 9.6 125 44-175 6-143 (318)
13 PF05296 TAS2R: Mammalian tast 98.6 3.1E-06 6.6E-11 66.5 13.7 132 33-168 5-142 (303)
14 PF11710 Git3: G protein-coupl 98.5 8.9E-06 1.9E-10 60.2 13.4 73 74-146 34-106 (201)
15 PF10323 7TM_GPCR_Srv: Serpent 98.4 1E-06 2.2E-11 68.6 6.1 128 45-175 5-139 (283)
16 PF05462 Dicty_CAR: Slime mold 98.3 2E-05 4.4E-10 61.8 12.6 127 36-175 8-134 (303)
17 PF10321 7TM_GPCR_Srt: Serpent 98.0 0.00025 5.4E-09 55.9 12.8 121 32-159 30-153 (313)
18 PF10317 7TM_GPCR_Srd: Serpent 97.9 0.00041 8.9E-09 54.2 12.6 124 39-172 3-137 (292)
19 PF10292 7TM_GPCR_Srab: Serpen 97.8 0.0014 3.1E-08 51.9 14.6 127 36-169 18-152 (324)
20 PF03402 V1R: Vomeronasal orga 97.7 0.00016 3.4E-09 55.6 6.7 101 71-172 6-111 (265)
21 PF10316 7TM_GPCR_Srbc: Serpen 97.4 0.0043 9.4E-08 48.0 11.1 106 36-148 7-115 (273)
22 PF10326 7TM_GPCR_Str: Serpent 96.7 0.002 4.3E-08 50.6 4.0 109 41-155 5-124 (307)
23 PF02118 Srg: Srg family chemo 96.5 0.014 3E-07 44.9 7.4 102 41-148 4-115 (275)
24 PF00002 7tm_2: 7 transmembran 96.5 0.0015 3.2E-08 49.4 1.7 124 40-173 6-129 (242)
25 PF02117 7TM_GPCR_Sra: Serpent 96.2 0.15 3.2E-06 40.7 11.9 108 35-149 21-136 (328)
26 PF03383 Serpentine_r_xa: Caen 95.5 0.014 3.1E-07 41.1 2.9 57 118-174 48-106 (153)
27 PF02101 Ocular_alb: Ocular al 95.0 1.4 3E-05 35.8 13.0 105 40-145 32-147 (405)
28 PF10327 7TM_GPCR_Sri: Serpent 94.6 0.87 1.9E-05 35.9 11.0 115 35-157 9-133 (303)
29 PF10318 7TM_GPCR_Srh: Serpent 93.8 1.7 3.6E-05 33.9 11.2 133 36-174 5-145 (302)
30 PF06681 DUF1182: Protein of u 93.3 1.8 3.8E-05 32.2 9.5 99 39-148 45-151 (226)
31 PF10319 7TM_GPCR_Srj: Serpent 90.4 5.2 0.00011 31.7 10.0 101 42-148 12-122 (310)
32 PF04789 DUF621: Protein of un 89.9 7.9 0.00017 30.2 10.4 96 74-170 47-148 (305)
33 PF02175 7TM_GPCR_Srb: Serpent 87.9 10 0.00022 28.8 13.9 54 107-160 78-131 (236)
34 KOG4193|consensus 87.5 18 0.00039 31.6 12.1 115 43-172 328-443 (610)
35 PF01534 Frizzled: Frizzled/Sm 73.1 47 0.001 26.6 12.8 132 35-173 9-153 (328)
36 PF01102 Glycophorin_A: Glycop 73.0 8.1 0.00017 26.2 4.1 30 35-66 66-95 (122)
37 PF10323 7TM_GPCR_Srv: Serpent 72.1 44 0.00096 25.9 8.9 101 36-138 167-272 (283)
38 PF03125 Sre: C. elegans Sre G 62.0 84 0.0018 25.4 12.1 109 33-148 25-157 (365)
39 PF02076 STE3: Pheromone A rec 39.7 1.8E+02 0.004 22.7 11.1 83 47-140 3-85 (283)
40 TIGR01477 RIFIN variant surfac 38.1 46 0.001 26.9 3.5 30 37-66 310-339 (353)
41 PTZ00046 rifin; Provisional 34.8 56 0.0012 26.5 3.5 29 38-66 316-344 (358)
42 PF10328 7TM_GPCR_Srx: Serpent 34.5 2.1E+02 0.0045 21.8 7.7 56 36-92 161-221 (274)
43 KOG4564|consensus 34.4 2.9E+02 0.0063 23.5 14.9 95 39-140 149-255 (473)
44 PF11446 DUF2897: Protein of u 33.6 62 0.0013 18.6 2.7 24 38-61 5-28 (55)
45 COG1230 CzcD Co/Zn/Cd efflux s 32.0 2.6E+02 0.0056 22.2 9.8 68 41-118 127-195 (296)
46 PF06679 DUF1180: Protein of u 31.5 1.3E+02 0.0028 21.6 4.6 29 35-63 93-121 (163)
47 PF09882 DUF2109: Predicted me 31.1 1.3E+02 0.0029 18.6 5.1 48 45-99 4-51 (78)
48 KOG1056|consensus 28.8 73 0.0016 29.2 3.6 51 35-85 559-609 (878)
49 KOG1482|consensus 28.8 2.7E+02 0.0058 22.9 6.4 82 44-125 182-274 (379)
50 KOG3609|consensus 26.1 5.2E+02 0.011 23.7 9.5 77 92-171 321-400 (822)
51 PF02009 Rifin_STEVOR: Rifin/s 25.6 78 0.0017 25.1 2.9 30 37-66 256-285 (299)
52 PF10192 GpcrRhopsn4: Rhodopsi 23.1 3.4E+02 0.0074 20.6 13.9 94 42-147 36-129 (257)
53 PF02118 Srg: Srg family chemo 22.6 3.4E+02 0.0074 20.4 9.4 29 35-63 171-199 (275)
54 PF02116 STE2: Fungal pheromon 21.6 3.4E+02 0.0074 21.3 5.7 31 35-66 33-63 (284)
55 PF15330 SIT: SHP2-interacting 20.4 2.1E+02 0.0046 18.8 3.8 30 37-66 3-32 (107)
No 1
>KOG4219|consensus
Probab=99.95 E-value=1.2e-28 Score=192.47 Aligned_cols=139 Identities=25% Similarity=0.494 Sum_probs=132.7
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccccccCCchHHHHHHHHHHHHHHHHHHHhhHHHHHHcccccccc
Q psy5300 31 TSSASSRAIILAILAVLSFVGNVLTIISIRKNRVHRGLRQHSWNGVYTLILHLSVADLFVTVFCLAGEAVWSYTVEWLWG 110 (177)
Q Consensus 31 ~~~~~~~~~~~~~~~~~gi~~N~~vi~~i~~~~~~~~~~~~~~~~~~~~l~~La~sDll~~l~~~~~~~~~~~~~~~~~~ 110 (177)
...+....++|.++.+++++||.++++++..+|++| +.+|+|+.|||+||+..+++..++........+|.+|
T Consensus 32 ~~~~~~wai~yg~l~~vAv~GN~iVlwIil~hrrMR-------tvtnyfL~NLAfADl~~s~Fn~~f~f~yal~~~W~~G 104 (423)
T KOG4219|consen 32 AWQQALWAIAYGLLVFVAVVGNLIVLWIILAHRRMR-------TVTNYFLVNLAFADLSMSIFNTVFNFQYALHQEWYFG 104 (423)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCceEEEEEeehhehh-------hhHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhccccc
Confidence 445677888999999999999999999999999999 9999999999999999999999998888888999999
Q ss_pred cchhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCccccccchhHHHHHHHHHHHHHhhcCccC
Q psy5300 111 NMSCKLFKFLQMFSLYLSTFILVLIGIDRFLAVRYPMKSISTSSRCCKFVIGAWILSALCSLPQIG 176 (177)
Q Consensus 111 ~~~C~~~~~~~~~~~~~s~~~l~~isidRy~ai~~p~~~~~t~~~~~~~i~~~W~~s~~~~~p~~~ 176 (177)
..+|++..++......+|+++++++|+|||.||.||++.+.++|....++.++|++|+++++|+.+
T Consensus 105 ~f~C~f~nf~~itav~vSVfTlvAiA~DRy~AIi~Pl~~r~s~r~sk~iIllIW~lA~l~a~P~~l 170 (423)
T KOG4219|consen 105 SFYCRFVNFFPITAVFVSVFTLVAIAIDRYMAIIHPLQPRPSRRSSKIIILLIWALALLLALPQLL 170 (423)
T ss_pred cceeeeccccchhhhhHhHHHHHHHHHHHHHHHhhhcccCCCCcceeehhHHHHHHHHHHhcccee
Confidence 999999999999999999999999999999999999998899999999999999999999999875
No 2
>PHA03234 DNA packaging protein UL33; Provisional
Probab=99.93 E-value=1.5e-25 Score=177.55 Aligned_cols=157 Identities=15% Similarity=0.208 Sum_probs=122.5
Q ss_pred ccCCcCCCCCCCCcCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHhh--cccccccccccCCchHHHHHHHHHHHH
Q psy5300 10 ANLSLFDNISREPCLQHAPQLTSSASSRAIILAILAVLSFVGNVLTIISIR--KNRVHRGLRQHSWNGVYTLILHLSVAD 87 (177)
Q Consensus 10 ~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~~N~~vi~~i~--~~~~~~~~~~~~~~~~~~~l~~La~sD 87 (177)
.|.++.....+.+|... +..+..+.....+|.+++++|++||+++++++. +++++| +++|+|+.|||+||
T Consensus 9 ~~~~~~~~~~~~~c~~~-~~~~~~~~~~~~~y~~vf~~gl~gN~lvl~v~~~~~~~~~r-------t~tn~fi~NLAvaD 80 (338)
T PHA03234 9 KILHDEEFKGNASCIST-PTLKKAQILESAINGIMLTLIIPMIIIVICTLIIYHKVAKH-------NATSFYLITLFASD 80 (338)
T ss_pred hhccCCccccCCCCcCc-hHHHHHHHHhhHHHHHHHHHHhhhHHHHHHHHHHHhccccc-------cHHHHHHHHHHHHH
Confidence 44455555555555433 222345677888999999999999999999554 555556 99999999999999
Q ss_pred HHHHHHHhhHHHHHHcccccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCccccccchhHHHHHHHHHHH
Q psy5300 88 LFVTVFCLAGEAVWSYTVEWLWGNMSCKLFKFLQMFSLYLSTFILVLIGIDRFLAVRYPMKSISTSSRCCKFVIGAWILS 167 (177)
Q Consensus 88 ll~~l~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~s~~~l~~isidRy~ai~~p~~~~~t~~~~~~~i~~~W~~s 167 (177)
++.++ ..|+..... .+.|.+|+..|++..++......+|++++++||+|||+||.+|.+...++++....+++.|+.+
T Consensus 81 LL~~l-~lp~~~~~~-~~~w~fG~~lCk~~~~~~~~~~~~Si~~L~~ISiDRY~aIv~p~~~~~~~~~~~~~i~~~Wi~s 158 (338)
T PHA03234 81 FLHML-CVFFLTLNR-EALFNFNQAFCQCVLFIYHASCSYSICMLAIIATIRYKTLHRRKKNDKKNNHIGRNIGILFLAS 158 (338)
T ss_pred HHHHH-HHHHHHHHH-hCCccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhHeeeechhhhhhhhhhHHHHHHHHHHHH
Confidence 99976 556555443 3579999999999999999999999999999999999999999974334444455566779999
Q ss_pred HHhhcCccC
Q psy5300 168 ALCSLPQIG 176 (177)
Q Consensus 168 ~~~~~p~~~ 176 (177)
++.++|+++
T Consensus 159 ~l~~~P~l~ 167 (338)
T PHA03234 159 AMCAIPAAL 167 (338)
T ss_pred HHHHhhHhH
Confidence 999999864
No 3
>PHA02834 chemokine receptor-like protein; Provisional
Probab=99.90 E-value=6e-23 Score=161.98 Aligned_cols=134 Identities=24% Similarity=0.432 Sum_probs=113.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccccccCCchHHHHHHHHHHHHHHHHHHHhhHHHHHHcccccccccc
Q psy5300 33 SASSRAIILAILAVLSFVGNVLTIISIRKNRVHRGLRQHSWNGVYTLILHLSVADLFVTVFCLAGEAVWSYTVEWLWGNM 112 (177)
Q Consensus 33 ~~~~~~~~~~~~~~~gi~~N~~vi~~i~~~~~~~~~~~~~~~~~~~~l~~La~sDll~~l~~~~~~~~~~~~~~~~~~~~ 112 (177)
.+....+++.+++++|++||+++++++.++++ + ++.|+|+.|||++|++. ....|+.+.... ++|..|+.
T Consensus 27 ~~~~~~~~~~li~v~~~~gN~lVi~vi~~~~~-~-------~~~n~~i~nLAiaDll~-~~~lP~~i~~~~-~~w~~g~~ 96 (323)
T PHA02834 27 VNYFVIVFYILLFIFGLIGNVLVIAVLIVKRF-M-------FVVDVYLFNIAMSDLML-VFSFPFIIHNDL-NEWIFGEF 96 (323)
T ss_pred hhhhHHHHHHHHHHHHHhhHHHHHHHHHhccc-c-------chhhhhhHHHHHHHHHH-HHHHHHHHHHHc-CCcCCcch
Confidence 44677889999999999999999998877554 3 56799999999999986 557887665544 47999999
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCc-cccccchhHHHHHHHHHHHHHhhcCccC
Q psy5300 113 SCKLFKFLQMFSLYLSTFILVLIGIDRFLAVRYPMK-SISTSSRCCKFVIGAWILSALCSLPQIG 176 (177)
Q Consensus 113 ~C~~~~~~~~~~~~~s~~~l~~isidRy~ai~~p~~-~~~t~~~~~~~i~~~W~~s~~~~~p~~~ 176 (177)
.|++..+....+..+|++++++||+|||.+|++|++ +..+.+++..+++++|+.+++.++|+++
T Consensus 97 ~C~~~~~~~~~~~~~Si~tL~~IsidRY~aI~~P~~~~~~~~~~~~~~i~~iWi~s~l~~~P~~~ 161 (323)
T PHA02834 97 MCKLVLGVYFVGFFSNMFFVTLISIDRYILVVNATKIKNKSISLSVLLSVAAWVCSVILSMPAMV 161 (323)
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHhhheeCchhccCCccchHHHHHHHHHHHHHHHHhhHHH
Confidence 999999999999999999999999999999999997 3445566777788999999999998753
No 4
>PHA03235 DNA packaging protein UL33; Provisional
Probab=99.90 E-value=1.2e-22 Score=164.63 Aligned_cols=137 Identities=18% Similarity=0.206 Sum_probs=110.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccccccCCchHHHHHHHHHHHHHHHHHHHhhHHHHHHccccccccc
Q psy5300 32 SSASSRAIILAILAVLSFVGNVLTIISIRKNRVHRGLRQHSWNGVYTLILHLSVADLFVTVFCLAGEAVWSYTVEWLWGN 111 (177)
Q Consensus 32 ~~~~~~~~~~~~~~~~gi~~N~~vi~~i~~~~~~~~~~~~~~~~~~~~l~~La~sDll~~l~~~~~~~~~~~~~~~~~~~ 111 (177)
..+....+++.+++++|++||+++++++.++++.++ ++..++|+.|||++|++. +...|+.+... ...|..+.
T Consensus 30 ~~~~~~~~~~~li~vvGiigN~lVL~~~~~~~r~~~-----~~~~~~~I~NLAvsDLl~-l~~lP~~i~~~-~~~~~~g~ 102 (409)
T PHA03235 30 AARTTETFINLLIISVGGPLNLIVLVTQLLANRVHG-----FSTPTLYMTNLYLANLLT-VFVLPFIMLSN-QGLLSGSV 102 (409)
T ss_pred hhHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccc-----CCccHHHHHHHHHHHHHH-HHHHHHHHHhc-CccccCCC
Confidence 345678888999999999999999987654333320 056678999999999987 56778765432 11233446
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCc-cccccchhHHHHHHHHHHHHHhhcCcc
Q psy5300 112 MSCKLFKFLQMFSLYLSTFILVLIGIDRFLAVRYPMK-SISTSSRCCKFVIGAWILSALCSLPQI 175 (177)
Q Consensus 112 ~~C~~~~~~~~~~~~~s~~~l~~isidRy~ai~~p~~-~~~t~~~~~~~i~~~W~~s~~~~~p~~ 175 (177)
..|++..+....+..+|++++++||+|||.+|++|.+ +..+++++..+++++|+.+++.++|+.
T Consensus 103 ~~Ck~~~~l~~~~~~~Si~tL~~ISiDRY~aI~~p~~~~~~~~~~a~~ii~~iWi~sll~s~P~~ 167 (409)
T PHA03235 103 AGCKFASLLYYASCTVGFATVALIAADRYRVIHQRTRARSSAYRSTYKILGLTWFASLICSGPAP 167 (409)
T ss_pred CeehhHHHHHHHHHHHHHHHHHHHHHHHHHHeechhhccCcccchhhhhHHHHHHHHHHHHHHHH
Confidence 8999999999999999999999999999999999987 445688899999999999999999864
No 5
>PHA03087 G protein-coupled chemokine receptor-like protein; Provisional
Probab=99.89 E-value=3.5e-22 Score=158.16 Aligned_cols=137 Identities=21% Similarity=0.439 Sum_probs=120.2
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccccccCCchHHHHHHHHHHHHHHHHHHHhhHHHHHHcccccccc
Q psy5300 31 TSSASSRAIILAILAVLSFVGNVLTIISIRKNRVHRGLRQHSWNGVYTLILHLSVADLFVTVFCLAGEAVWSYTVEWLWG 110 (177)
Q Consensus 31 ~~~~~~~~~~~~~~~~~gi~~N~~vi~~i~~~~~~~~~~~~~~~~~~~~l~~La~sDll~~l~~~~~~~~~~~~~~~~~~ 110 (177)
+..+.....++.+++++|++||+++++++.++ ++| ++.++++.|||++|++.++ ..|..........|..+
T Consensus 37 ~~~~~~~~~~~~~i~~~gl~gN~lvl~~~~~~-~~~-------~~~~~ll~~laisDll~~~-~~~~~~~~~~~~~~~~~ 107 (335)
T PHA03087 37 DTNSTILIVVYSTIFFFGLVGNIIVIYVLTKT-KIK-------TPMDIYLLNLAVSDLLFVM-TLPFQIYYYILFQWSFG 107 (335)
T ss_pred cchhhHHHHHHHHHHHHHHHhhHhEEeeehhc-ccc-------CchHHHHHHHHHHHHHHHH-hHHHHHHHHhCCCCCCC
Confidence 34556778889999999999999999998887 777 9999999999999998766 56666655666788889
Q ss_pred cchhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCc--cccccchhHHHHHHHHHHHHHhhcCccC
Q psy5300 111 NMSCKLFKFLQMFSLYLSTFILVLIGIDRFLAVRYPMK--SISTSSRCCKFVIGAWILSALCSLPQIG 176 (177)
Q Consensus 111 ~~~C~~~~~~~~~~~~~s~~~l~~isidRy~ai~~p~~--~~~t~~~~~~~i~~~W~~s~~~~~p~~~ 176 (177)
+..|++..+.......+|+++++++|+|||+++++|++ ...+++++..++.++|+.+++.++|+++
T Consensus 108 ~~~C~~~~~~~~~~~~~S~~~l~~iaidRy~aI~~p~~~~~~~~~~~~~~~~~~iWl~~~~~~~p~~~ 175 (335)
T PHA03087 108 EFACKIVSGLYYIGFYNSMNFITVMSVDRYIAIVHPVKSNKINTVKYGYIVSLVIWIISIIETTPILF 175 (335)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCccccccchhhhHHHHHHHHHHHHHHhccHhh
Confidence 99999999999999999999999999999999999997 5578888888999999999999998754
No 6
>PHA02638 CC chemokine receptor-like protein; Provisional
Probab=99.88 E-value=1e-21 Score=159.69 Aligned_cols=134 Identities=22% Similarity=0.391 Sum_probs=114.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccccccCCchHHHHHHHHHHHHHHHHHHHhhHHHHHHcccccccccc
Q psy5300 33 SASSRAIILAILAVLSFVGNVLTIISIRKNRVHRGLRQHSWNGVYTLILHLSVADLFVTVFCLAGEAVWSYTVEWLWGNM 112 (177)
Q Consensus 33 ~~~~~~~~~~~~~~~gi~~N~~vi~~i~~~~~~~~~~~~~~~~~~~~l~~La~sDll~~l~~~~~~~~~~~~~~~~~~~~ 112 (177)
.......++.+++++|++||.++++++.+ |++| ++.++++.|||++|++.. ...|+.+... .++|.+|+.
T Consensus 97 ~~~~l~~~y~lvfvlgliGN~LVl~il~~-k~lr-------t~t~i~llnLAisDLl~~-l~lPf~i~~~-~~~W~fg~~ 166 (417)
T PHA02638 97 ISEYIKIFYIIIFILGLFGNAAIIMILFC-KKIK-------TITDIYIFNLAISDLIFV-IDFPFIIYNE-FDQWIFGDF 166 (417)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHh-ccCC-------CHhHHHHHHHHHHHHHHH-HHHHHHHHHH-hcccccccc
Confidence 34567788999999999999999987654 6677 899999999999999874 4778777655 368999999
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCc--cccccchhHHHHHHHHHHHHHhhcCccC
Q psy5300 113 SCKLFKFLQMFSLYLSTFILVLIGIDRFLAVRYPMK--SISTSSRCCKFVIGAWILSALCSLPQIG 176 (177)
Q Consensus 113 ~C~~~~~~~~~~~~~s~~~l~~isidRy~ai~~p~~--~~~t~~~~~~~i~~~W~~s~~~~~p~~~ 176 (177)
.|++..++.......+++.++++++|||+||+||.+ +..++++....++++|+++++.++|+++
T Consensus 167 ~Ck~~~~l~~~~~~~Si~~L~~isiDRYlaIv~p~~~~~~~~~~~~~i~~~~iW~~s~l~slP~~~ 232 (417)
T PHA02638 167 MCKVISASYYIGFFSNMFLITLMSIDRYFAILYPISFQKYRTFNIGIILCIISWILSLIITSPAYF 232 (417)
T ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccceecHhhhHhhHhHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999997 3445556667788999999999999864
No 7
>KOG4220|consensus
Probab=99.88 E-value=5e-24 Score=166.95 Aligned_cols=138 Identities=25% Similarity=0.419 Sum_probs=130.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccccccCCchHHHHHHHHHHHHHHHHHHHhhHHHHHHcccccccccc
Q psy5300 33 SASSRAIILAILAVLSFVGNVLTIISIRKNRVHRGLRQHSWNGVYTLILHLSVADLFVTVFCLAGEAVWSYTVEWLWGNM 112 (177)
Q Consensus 33 ~~~~~~~~~~~~~~~gi~~N~~vi~~i~~~~~~~~~~~~~~~~~~~~l~~La~sDll~~l~~~~~~~~~~~~~~~~~~~~ 112 (177)
+..+++++...++++.++||++|++.+..+|+++ +..|+|+.+||+||++.|.+.+|.......-+.|.+|..
T Consensus 29 q~v~i~~v~~~lsLVTv~GNlLVmiSfKvnrqLq-------TVnNYfLfSLAcADliIG~~SMnl~t~Y~lmg~W~LG~~ 101 (503)
T KOG4220|consen 29 QVVFIVVVTGSLSLVTVVGNLLVMISFKVNRQLQ-------TVNNYFLFSLACADLIIGAFSMNLYTTYTLMGYWPLGPL 101 (503)
T ss_pred EEEeeehhhhHHHHHhhhccEEEEEEEEecceee-------eecceeehHHHHhhhhhheeechHHHHHHHHcccccchH
Confidence 3456777788999999999999999999999999 999999999999999999999999999999999999999
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCc--cccccchhHHHHHHHHHHHHHhhcCccCC
Q psy5300 113 SCKLFKFLQMFSLYLSTFILVLIGIDRFLAVRYPMK--SISTSSRCCKFVIGAWILSALCSLPQIGT 177 (177)
Q Consensus 113 ~C~~~~~~~~~~~~~s~~~l~~isidRy~ai~~p~~--~~~t~~~~~~~i~~~W~~s~~~~~p~~~~ 177 (177)
.|++...+-+...-+|++.+..||+|||..|.+|+. .++|++|+..+|++.|++|+++..|.+++
T Consensus 102 ~CdlWLalDYvaSNASVmNLLiISFDRYFsVTrPLtYrakRTtkrA~~MI~~AW~iSfiLWaPaIl~ 168 (503)
T KOG4220|consen 102 VCDLWLALDYVASNASVMNLLIISFDRYFSVTRPLTYRAKRTTKRAGLMIGAAWVLSFVLWAPAILF 168 (503)
T ss_pred HHHHHHHHHHHhhhhhhhhhheeeeecceeecccccccccccchHHHHHHHHHHHHHHHHHHHHHHh
Confidence 999999999999999999999999999999999996 78999999999999999999999987754
No 8
>PF00001 7tm_1: 7 transmembrane receptor (rhodopsin family) Rhodopsin-like GPCR superfamily signature 5-hydroxytryptamine 7 receptor signature bradykinin receptor signature gastrin receptor signature melatonin receptor signature olfactory receptor signature; InterPro: IPR000276 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The rhodopsin-like GPCRs themselves represent a widespread protein family that includes hormone, neurotransmitter and light receptors, all of which transduce extracellular signals through interaction with guanine nucleotide-binding (G) proteins. Although their activating ligands vary widely in structure and character, the amino acid sequences of the receptors are very similar and are believed to adopt a common structural framework comprising 7 transmembrane (TM) helices [, , ].; GO: 0007186 G-protein coupled receptor protein signaling pathway, 0016021 integral to membrane; PDB: 2KI9_A 3QAK_A 2YDV_A 3VGA_A 3PWH_A 3RFM_A 3EML_A 3VG9_A 3REY_A 3UZA_A ....
Probab=99.84 E-value=1.3e-20 Score=141.73 Aligned_cols=119 Identities=38% Similarity=0.647 Sum_probs=109.1
Q ss_pred HHHHHHHHhhcccccccccccCCchHHHHHHHHHHHHHHHHHHHhhHHHHHHcccccccccchhhHHHHHHHHHHHHHHH
Q psy5300 51 GNVLTIISIRKNRVHRGLRQHSWNGVYTLILHLSVADLFVTVFCLAGEAVWSYTVEWLWGNMSCKLFKFLQMFSLYLSTF 130 (177)
Q Consensus 51 ~N~~vi~~i~~~~~~~~~~~~~~~~~~~~l~~La~sDll~~l~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~s~~ 130 (177)
||.++++++.++|++| ++.++++.|||++|++.++...|........++|..++..|++..++...+...+.+
T Consensus 1 GN~lvi~~~~~~~~~~-------~~~~~~l~~Lav~Dll~~~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~s~~ 73 (257)
T PF00001_consen 1 GNILVILVILRSKRLR-------TPSNILLLNLAVADLLVGLFCIPFYIYSLLFDDWIFSSFLCRIFGFLFYFSSFSSIF 73 (257)
T ss_dssp HHHHHHHHHHHSGGG--------SHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHSSCTSHHHHHHHHHHHHHHHHHHHHH
T ss_pred CchhehhhhhhhccCC-------ChhHHHHHHHHHHHHhhcccccccccccccccccccccccccccccccccccccccc
Confidence 8999999999999999 999999999999999999988888777777678999999999999999999999999
Q ss_pred HHHHHHHHHHhhhhcCCc--cccccchhHHHHHHHHHHHHHhhcCccC
Q psy5300 131 ILVLIGIDRFLAVRYPMK--SISTSSRCCKFVIGAWILSALCSLPQIG 176 (177)
Q Consensus 131 ~l~~isidRy~ai~~p~~--~~~t~~~~~~~i~~~W~~s~~~~~p~~~ 176 (177)
+++++++|||+++++|++ +..+++++...++++|+.+++.++|+.+
T Consensus 74 ~~~~is~dRy~~i~~p~~~~~~~~~~~~~~~i~~~w~~~~~~~~~~~~ 121 (257)
T PF00001_consen 74 SLVAISIDRYLAICHPLRYRRIRTRRRARIIIILIWIISFLISLPPLF 121 (257)
T ss_dssp HHHHHHHHHHHHHHSHHTHHHHSCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 999999999999999997 5667789999999999999999998743
No 9
>KOG2087|consensus
Probab=99.58 E-value=5.8e-15 Score=114.83 Aligned_cols=134 Identities=27% Similarity=0.454 Sum_probs=111.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcccccccccccCCchHHHHHHHHHHHHHHHHHHHhhHHHHHHccc--------c
Q psy5300 35 SSRAIILAILAVLSFVGNVLTIISIRKNRVHRGLRQHSWNGVYTLILHLSVADLFVTVFCLAGEAVWSYTV--------E 106 (177)
Q Consensus 35 ~~~~~~~~~~~~~gi~~N~~vi~~i~~~~~~~~~~~~~~~~~~~~l~~La~sDll~~l~~~~~~~~~~~~~--------~ 106 (177)
.++.+.-.++..++++||.+++......+... ++..++++|||++|+++++........+.... +
T Consensus 25 ~~lRi~vW~i~~lAi~gN~~Vl~~~~~~~~~~-------~~~~~li~~la~ad~~mGiYl~~ia~vD~~~~gey~~~ai~ 97 (363)
T KOG2087|consen 25 WILRISVWVIALLAIVGNLLVLLTRFTSRYEL-------NSHRFLICNLAFADLLMGIYLGLIASVDAKTRGEYYKHAID 97 (363)
T ss_pred ceeeehhhhhhhHHhccCeeeeeeeeehhhhc-------cchHHHHHHHHHHHHHcchHHHHHHHhhHHHHHHHHHHHHh
Confidence 44566678899999999999998888887776 88899999999999999986665555554322 4
Q ss_pred cccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCc-cccccch-hHHHHHHHHHHHHHhhcCccC
Q psy5300 107 WLWGNMSCKLFKFLQMFSLYLSTFILVLIGIDRFLAVRYPMK-SISTSSR-CCKFVIGAWILSALCSLPQIG 176 (177)
Q Consensus 107 ~~~~~~~C~~~~~~~~~~~~~s~~~l~~isidRy~ai~~p~~-~~~t~~~-~~~~i~~~W~~s~~~~~p~~~ 176 (177)
|+. ...|++.+++..+....|++.++.+++||+..|.+|+| .+..+.| ...++.+.|+.+.+.++.|.+
T Consensus 98 W~t-g~gC~~aGflavFASElSv~~LT~itlEr~l~i~~p~~~~~~~~lr~~~~ill~~wl~~~l~A~~Pl~ 168 (363)
T KOG2087|consen 98 WQT-GLGCPVAGFLAVFASELSVFLLTLITLERWLSITYPFRLDRKAKLRPLVLILLLGWLFAFLMALLPLF 168 (363)
T ss_pred hhh-cCCCchHHHHHHHHHHHHHHHHHHHHHHHHhheeccccCCCcccccHHHHHHHHHHHHHHHHHhcccc
Confidence 544 45999999999999999999999999999999999998 4444444 888899999999999887764
No 10
>PF10320 7TM_GPCR_Srsx: Serpentine type 7TM GPCR chemoreceptor Srsx; InterPro: IPR019424 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class sx (Srsx), which is a solo family amongst the superfamilies of chemoreceptors. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' [].
Probab=99.45 E-value=1.4e-13 Score=105.50 Aligned_cols=116 Identities=28% Similarity=0.368 Sum_probs=94.8
Q ss_pred HHHHHHHHHHHHHhhcccccccccccCCchHHHHHHHHHHHHHHHHHHHhhHHHHHHcccccccccchhhHHHHHHHHHH
Q psy5300 46 VLSFVGNVLTIISIRKNRVHRGLRQHSWNGVYTLILHLSVADLFVTVFCLAGEAVWSYTVEWLWGNMSCKLFKFLQMFSL 125 (177)
Q Consensus 46 ~~gi~~N~~vi~~i~~~~~~~~~~~~~~~~~~~~l~~La~sDll~~l~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~ 125 (177)
++|++||..++..+.++|++| ++.+++++.+|++|++.+....|...... ++.+.....|-...+...++.
T Consensus 2 ~ig~~gN~~~i~~~~~~~~Lr-------s~~~~li~~~~~~d~~~~~~~~~~~~~~~--~~~~i~~~~Cf~~~~~~~f~~ 72 (257)
T PF10320_consen 2 IIGLFGNLLLIILIFRNKSLR-------SPCYILICILCFADLICLLGTLPFMLFLF--RDHQITRSECFWQIFFYIFFQ 72 (257)
T ss_pred EEEEEccHHHHHHHHhccccc-------cchHHHHHHHHHHHHHHHhhHHHHHHHHH--hheeccHHHHHHHHHHHHHHH
Confidence 468899999999999999999 99999999999999999887777665433 344567779999999999999
Q ss_pred HHHHHHHHHHHHHHHhhhhcCCc--cccccchhHHHHHHHHHHHHHh
Q psy5300 126 YLSTFILVLIGIDRFLAVRYPMK--SISTSSRCCKFVIGAWILSALC 170 (177)
Q Consensus 126 ~~s~~~l~~isidRy~ai~~p~~--~~~t~~~~~~~i~~~W~~s~~~ 170 (177)
......+.+|++||++||+.|.+ +..+++..........+++...
T Consensus 73 ~~qs~~~l~i~iDr~iaV~~P~~Y~~~~~~~y~~~~~~~~~~~s~~~ 119 (257)
T PF10320_consen 73 CAQSVIMLAIAIDRLIAVCFPLRYRTISTRKYLIILLIFPVIYSIFF 119 (257)
T ss_pred HHHHHHHHHHHhhheeeEeehhhhhhcccccchhhHhHHHHHHHHHH
Confidence 99999999999999999999997 3445545555445555555543
No 11
>PF10328 7TM_GPCR_Srx: Serpentine type 7TM GPCR chemoreceptor Srx; InterPro: IPR019430 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class x (Srx) from the Srg superfamily [, ]. Srg receptors contain seven hydrophobic, putative transmembrane, regions and can be distinguished from other 7TM GPCR receptors by their own characteristic TM signatures.
Probab=99.27 E-value=4.6e-11 Score=92.30 Aligned_cols=123 Identities=22% Similarity=0.334 Sum_probs=99.4
Q ss_pred HHHHHHHHHHHHHHHhhcccccccccccCCchHHHHHHHHHHHHHHHHHHHhhHHHHHHcccccccccc-hhhHHHHHHH
Q psy5300 44 LAVLSFVGNVLTIISIRKNRVHRGLRQHSWNGVYTLILHLSVADLFVTVFCLAGEAVWSYTVEWLWGNM-SCKLFKFLQM 122 (177)
Q Consensus 44 ~~~~gi~~N~~vi~~i~~~~~~~~~~~~~~~~~~~~l~~La~sDll~~l~~~~~~~~~~~~~~~~~~~~-~C~~~~~~~~ 122 (177)
++++|++.|.++++.+.|.+++| ++.+++..+.|++|.+.++.......-....+.....+. .-.+.+....
T Consensus 3 ~s~~G~~~N~~v~~~~~~~~~~~-------~sF~~l~~~~a~~n~i~~~~~l~~~~P~~~~~~~~~~~~~~s~~~g~~~~ 75 (274)
T PF10328_consen 3 ISIIGIILNWLVFIIIFKLKSLR-------NSFGILCASQAIANIIICLIFLFWVVPMTLLDISFLPSSLNSIIFGFIGM 75 (274)
T ss_pred eeHHHHHHHHHHHHHHHhccccc-------CCHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccCchHHHHHHHHHHHH
Confidence 56899999999999999999998 999999999999999998866544333333333233333 3445578888
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhcCCc--cccccchhHHHHHHHHHHHHHhhcC
Q psy5300 123 FSLYLSTFILVLIGIDRFLAVRYPMK--SISTSSRCCKFVIGAWILSALCSLP 173 (177)
Q Consensus 123 ~~~~~s~~~l~~isidRy~ai~~p~~--~~~t~~~~~~~i~~~W~~s~~~~~p 173 (177)
.+...+..+-.+||++|+.|+..|.+ +..+.+.+..++++.|++++....+
T Consensus 76 ~~y~~~~~~~~liaiNRf~ai~fP~~y~~~fs~~~T~~~i~~~~~~~~~~~~~ 128 (274)
T PF10328_consen 76 FCYFIGPLSHLLIAINRFCAIFFPFKYKKIFSFKNTIILIAFIWLLSIIISTI 128 (274)
T ss_pred HHHHHHHHHHHHHHHHHHheeeeHHHHHhHcCccceehhhhHHHHHHHHHHHH
Confidence 88899999999999999999999996 6778889999999999999865544
No 12
>PF10324 7TM_GPCR_Srw: Serpentine type 7TM GPCR chemoreceptor Srw; InterPro: IPR019427 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class w (Srw), which is a solo family amongst the superfamilies of chemoreceptors. The genes encoding Srw do not appear to be under as strong an adaptive evolutionary pressure as those of Srz [].
Probab=98.83 E-value=3e-08 Score=78.08 Aligned_cols=125 Identities=18% Similarity=0.306 Sum_probs=92.8
Q ss_pred HHHHHHHHHHHHHHHhhcccccccccccCCchHHHHHHHHHHHHHHHHHHHhhHHHHHHccc--cc---cc----ccchh
Q psy5300 44 LAVLSFVGNVLTIISIRKNRVHRGLRQHSWNGVYTLILHLSVADLFVTVFCLAGEAVWSYTV--EW---LW----GNMSC 114 (177)
Q Consensus 44 ~~~~gi~~N~~vi~~i~~~~~~~~~~~~~~~~~~~~l~~La~sDll~~l~~~~~~~~~~~~~--~~---~~----~~~~C 114 (177)
+.++|+++|.+-+.+. .+|.+|. ++.|.++..+|++|++..+...+......... +. .. .....
T Consensus 6 ~~~~g~~~N~~h~~VL-trk~mR~------~~in~~l~~Iai~Dl~~~~~~~~~~~~~~~~~~~~~~C~~~~sy~~~~~~ 78 (318)
T PF10324_consen 6 LSIFGLFINIFHLIVL-TRKSMRS------SSINILLIGIAICDLLYMLSILIWELFFFIIFYEDDECIPPYSYFWAYFK 78 (318)
T ss_pred EeHHHHHHHHHHhhhc-CChhhhc------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccCCCCcccHHHHHHH
Confidence 4678999999888766 5556662 68999999999999999887777666444322 11 11 11233
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCc----cccccchhHHHHHHHHHHHHHhhcCcc
Q psy5300 115 KLFKFLQMFSLYLSTFILVLIGIDRFLAVRYPMK----SISTSSRCCKFVIGAWILSALCSLPQI 175 (177)
Q Consensus 115 ~~~~~~~~~~~~~s~~~l~~isidRy~ai~~p~~----~~~t~~~~~~~i~~~W~~s~~~~~p~~ 175 (177)
.+.......+.-.|.|..++||+.|++++.+|++ ...+++.+...+.++.+.+.+...+..
T Consensus 79 ~~~~~l~~~~~~~S~WL~V~mA~iR~l~i~~p~~~~~~~l~~~k~~~~~i~~v~~~s~~~~~~~~ 143 (318)
T PF10324_consen 79 LIMESLSDIFRRISIWLGVLMALIRYLSIKFPMSSRFQKLSKPKFAIIVILIVFIISFLFSIPYF 143 (318)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccCCCCeeeeehHHHHHHHHHHHHHhh
Confidence 4455678888999999999999999999999996 234667777777888888887776654
No 13
>PF05296 TAS2R: Mammalian taste receptor protein (TAS2R); InterPro: IPR007960 This family consists of several forms of mammalian taste receptor proteins (TAS2Rs). TAS2Rs are G protein-coupled receptors expressed in subsets of taste receptor cells of the tongue and palate epithelia and are organised in the genome in clusters. The proteins are genetically linked to loci that influence bitter perception in mice and humans [].; GO: 0004930 G-protein coupled receptor activity, 0007186 G-protein coupled receptor protein signaling pathway, 0050909 sensory perception of taste, 0016021 integral to membrane
Probab=98.57 E-value=3.1e-06 Score=66.51 Aligned_cols=132 Identities=14% Similarity=0.165 Sum_probs=101.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccccccCCchHHHHHHHHHHHHHHHHHHHhhHHHHHHcccccccccc
Q psy5300 33 SASSRAIILAILAVLSFVGNVLTIISIRKNRVHRGLRQHSWNGVYTLILHLSVADLFVTVFCLAGEAVWSYTVEWLWGNM 112 (177)
Q Consensus 33 ~~~~~~~~~~~~~~~gi~~N~~vi~~i~~~~~~~~~~~~~~~~~~~~l~~La~sDll~~l~~~~~~~~~~~~~~~~~~~~ 112 (177)
.+....++..+..++|++||+.+..+..++..++ ++-+|.+..+.+||+++++.............+..+....+.
T Consensus 5 ~~~i~~~i~~~~~~~Gi~~N~FI~~vn~~~w~k~----~~l~~~d~IL~~La~sr~~l~~~~~~~~~~~~~~~~~~~~~~ 80 (303)
T PF05296_consen 5 LEIIFLIILVVEFIIGILGNGFIVLVNCSDWVKS----RKLSPSDQILTSLAISRILLQWVILLNSFLSFFFPNIYFSEN 80 (303)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHcC----CCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHcchhhhhhh
Confidence 3456677888999999999999998887665444 344899999999999999987766655555555555556667
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCc------cccccchhHHHHHHHHHHHH
Q psy5300 113 SCKLFKFLQMFSLYLSTFILVLIGIDRFLAVRYPMK------SISTSSRCCKFVIGAWILSA 168 (177)
Q Consensus 113 ~C~~~~~~~~~~~~~s~~~l~~isidRy~ai~~p~~------~~~t~~~~~~~i~~~W~~s~ 168 (177)
.++...+...+....|.|..+++++--++.|.+.-+ +.+-++....++.+.++.++
T Consensus 81 ~~~~~~~~~~f~~~~s~W~tt~LsvfYcvKI~~fs~~~Fl~LK~rI~~~v~~lLl~s~l~s~ 142 (303)
T PF05296_consen 81 VYKIIDFLWMFSNSSSLWFTTWLSVFYCVKIANFSHPFFLWLKRRISKVVPWLLLGSLLISF 142 (303)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHheeeecCCcHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 889999999999999999999999999988866553 23333344456677777777
No 14
>PF11710 Git3: G protein-coupled glucose receptor regulating Gpa2; InterPro: IPR023041 This entry contains a functionally uncharacterised region belonging to the Git3 G-protein coupled receptor. Git3 is one of six proteins required for glucose-triggered adenylate cyclase activation, and is a G protein-coupled receptor responsible for the activation of adenylate cyclase through Gpa2 - heterotrimeric G protein alpha subunit, part of the glucose-detection pathway. Git3 contains seven predicted transmembrane domains, a third cytoplasmic loop and a cytoplasmic tail []. This is the conserved N-terminal domain of the member proteins.
Probab=98.48 E-value=8.9e-06 Score=60.16 Aligned_cols=73 Identities=23% Similarity=0.237 Sum_probs=63.2
Q ss_pred chHHHHHHHHHHHHHHHHHHHhhHHHHHHcccccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcC
Q psy5300 74 NGVYTLILHLSVADLFVTVFCLAGEAVWSYTVEWLWGNMSCKLFKFLQMFSLYLSTFILVLIGIDRFLAVRYP 146 (177)
Q Consensus 74 ~~~~~~l~~La~sDll~~l~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~s~~~l~~isidRy~ai~~p 146 (177)
.-++-++.||.++|++.++............+....++..|..++++.......+-+...+|+++-|+.+.+|
T Consensus 34 ~fR~~LIl~L~~aD~~qal~~~i~~~~~l~~~~i~~~s~~C~aqGf~~q~g~~~sd~~ilaIAihT~l~v~~~ 106 (201)
T PF11710_consen 34 SFRHQLILNLLLADFIQALAFLISPIRWLARGGIIAPSPFCQAQGFFLQVGDEASDLWILAIAIHTFLIVFRP 106 (201)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCeeCCCCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 4555699999999999999877656666665556667789999999999999999999999999999999999
No 15
>PF10323 7TM_GPCR_Srv: Serpentine type 7TM GPCR chemoreceptor Srv; InterPro: IPR019426 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class v (Srv) from the Srg superfamily [, ]. Srg receptors contain seven hydrophobic, putative transmembrane, regions and can be distinguished from other 7TM GPCR receptors by their own characteristic TM signatures.
Probab=98.36 E-value=1e-06 Score=68.60 Aligned_cols=128 Identities=18% Similarity=0.397 Sum_probs=92.8
Q ss_pred HHHHHHHHHHHHHHhhcccccccccccCCchHHHHHHHHHHHHHHHHHHHhhHHHHHHcc--cc--cccccchhhHHHHH
Q psy5300 45 AVLSFVGNVLTIISIRKNRVHRGLRQHSWNGVYTLILHLSVADLFVTVFCLAGEAVWSYT--VE--WLWGNMSCKLFKFL 120 (177)
Q Consensus 45 ~~~gi~~N~~vi~~i~~~~~~~~~~~~~~~~~~~~l~~La~sDll~~l~~~~~~~~~~~~--~~--~~~~~~~C~~~~~~ 120 (177)
+++.++-...+++.+.+.|+.++ .-+++.+-++.+.+++|++..+............ ++ ...++..-+.....
T Consensus 5 ~~~tlply~~il~~l~~~r~~~~---~~~~~Fy~l~~~~~iaDi~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~ 81 (283)
T PF10323_consen 5 SIVTLPLYIFILYCLLKLRKRSK---TFKSTFYTLLIQHCIADILSMLFYFLLQRFRAYGFFNDFYFSYQTYYAAIYYNI 81 (283)
T ss_pred EeehHHHHHHHHHHHHHcccCcc---ccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhcchhHHHHHHH
Confidence 34556666677777766665431 0118999999999999999876554433332221 11 12233345677777
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhcCC-c--cccccchhHHHHHHHHHHHHHhhcCcc
Q psy5300 121 QMFSLYLSTFILVLIGIDRFLAVRYPM-K--SISTSSRCCKFVIGAWILSALCSLPQI 175 (177)
Q Consensus 121 ~~~~~~~s~~~l~~isidRy~ai~~p~-~--~~~t~~~~~~~i~~~W~~s~~~~~p~~ 175 (177)
.+..........+.+|++||.|+++|. + +..++.+...+..+-|+.+++.++|.+
T Consensus 82 ~y~~~~~~~~gi~lls~nR~~ai~~P~~~~~~~~~~~~~~~i~~i~wi~p~li~~~~~ 139 (283)
T PF10323_consen 82 AYYFLYIQCIGIVLLSLNRYLAICFPTSRHTKFWQPAKIWIIILIQWIPPLLISLPFF 139 (283)
T ss_pred HHHHHHHHHHhHHHHHHhhhheEEeecHHHhhhccccchhheeeeeehhhhhheeeee
Confidence 888888999999999999999999999 4 677888888899999999999998854
No 16
>PF05462 Dicty_CAR: Slime mold cyclic AMP receptor
Probab=98.32 E-value=2e-05 Score=61.78 Aligned_cols=127 Identities=18% Similarity=0.233 Sum_probs=98.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcccccccccccCCchHHHHHHHHHHHHHHHHHHHhhHHHHHHcccccccccchhh
Q psy5300 36 SRAIILAILAVLSFVGNVLTIISIRKNRVHRGLRQHSWNGVYTLILHLSVADLFVTVFCLAGEAVWSYTVEWLWGNMSCK 115 (177)
Q Consensus 36 ~~~~~~~~~~~~gi~~N~~vi~~i~~~~~~~~~~~~~~~~~~~~l~~La~sDll~~l~~~~~~~~~~~~~~~~~~~~~C~ 115 (177)
....+..+..+++++|-++++....+.|++| ++.+-++.-++++|++..+..... ...++...++..|.
T Consensus 8 ~~~~i~~~~s~lSllGclfiI~tf~~~k~~r-------~~~~rli~yl~~~~ll~~v~~~~~----~~~~~~~~~s~lC~ 76 (303)
T PF05462_consen 8 TLYAIELVASVLSLLGCLFIIITFCLFKRLR-------KPINRLIFYLSIANLLTNVASMIM----TLSPSAGENSFLCQ 76 (303)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-------ccHHHHHHHHHHHHHHHHHHHHHH----HhcccCCCCCcchh
Confidence 4555667789999999999999999999999 888889999999999987644321 12233344577999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCccccccchhHHHHHHHHHHHHHhhcCcc
Q psy5300 116 LFKFLQMFSLYLSTFILVLIGIDRFLAVRYPMKSISTSSRCCKFVIGAWILSALCSLPQI 175 (177)
Q Consensus 116 ~~~~~~~~~~~~s~~~l~~isidRy~ai~~p~~~~~t~~~~~~~i~~~W~~s~~~~~p~~ 175 (177)
.++++...+..++.+=.++||++=|..+.++.. ..+|.-..-..+.|...++.++.++
T Consensus 77 ~Qafliq~f~~as~lWt~~iA~nly~~~~~~~~--~~~k~e~~Y~l~~wGiPli~a~i~l 134 (303)
T PF05462_consen 77 FQAFLIQFFMLASFLWTLCIAFNLYLTFVKRYD--ELEKLEKYYHLVCWGIPLIPAVIPL 134 (303)
T ss_pred hHhHHHHHhhHHHHHHHHHHHHHhhheeEEcCc--cHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999887543 2344445556788998888765543
No 17
>PF10321 7TM_GPCR_Srt: Serpentine type 7TM GPCR chemoreceptor Srt; InterPro: IPR019425 Chemoreception is mediated in Caenorhabditis elegans by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs) of proteins which are of the serpentine type []. Srt is a member of the Srg superfamily of chemoreceptors. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' [].
Probab=98.00 E-value=0.00025 Score=55.95 Aligned_cols=121 Identities=14% Similarity=0.194 Sum_probs=84.9
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccccccCCchHHHHHHHHHHHHHHHHHHHhhHHHHHHccc-ccccc
Q psy5300 32 SSASSRAIILAILAVLSFVGNVLTIISIRKNRVHRGLRQHSWNGVYTLILHLSVADLFVTVFCLAGEAVWSYTV-EWLWG 110 (177)
Q Consensus 32 ~~~~~~~~~~~~~~~~gi~~N~~vi~~i~~~~~~~~~~~~~~~~~~~~l~~La~sDll~~l~~~~~~~~~~~~~-~~~~~ 110 (177)
..+......+.+.+++-.+.....++++.++++.| .+.|=.+.-|++.|++...............+ .+-.-
T Consensus 30 ~~~p~~G~~~~~~g~~~~~lY~p~~~~i~~~~~~k-------~~~ykiM~~L~i~Di~~l~~~si~tG~l~i~G~vfC~~ 102 (313)
T PF10321_consen 30 VKRPILGIYFLIFGIIIIILYIPCLIAIFKKKLFK-------MSCYKIMFFLAIFDIIQLFINSIITGILAIFGAVFCSY 102 (313)
T ss_pred CcccchhHHHHHHHHHHHHHHHHHHHHHHHhcccc-------CcHHHHHHHHHHHHHHHHHhhhhhhhHHHhcCccccCC
Confidence 44567788889999999999999999998877776 89999999999999998654322222222222 11111
Q ss_pred cchhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCc--cccccchhHHH
Q psy5300 111 NMSCKLFKFLQMFSLYLSTFILVLIGIDRFLAVRYPMK--SISTSSRCCKF 159 (177)
Q Consensus 111 ~~~C~~~~~~~~~~~~~s~~~l~~isidRy~ai~~p~~--~~~t~~~~~~~ 159 (177)
+..=.+.+.....+...+...-..+++||..-+..|.+ .....++....
T Consensus 103 P~~~~i~G~~~~~~W~~~c~~~i~LainR~~~l~~~~~~~~~F~g~~~~~~ 153 (313)
T PF10321_consen 103 PRFIYIMGCIALGSWCGSCIICILLAINRCCELNFPFKLKFLFEGKRTYIV 153 (313)
T ss_pred chHhhhhhccchhhHHHHHHHHHHHHHHHHHHHhcchhhHHhhcCceEEee
Confidence 11234455666777888899999999999999998875 34444554443
No 18
>PF10317 7TM_GPCR_Srd: Serpentine type 7TM GPCR chemoreceptor Srd; InterPro: IPR019421 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents the chemoreceptor Srd [].
Probab=97.91 E-value=0.00041 Score=54.18 Aligned_cols=124 Identities=17% Similarity=0.149 Sum_probs=88.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcccccccccccCCchHHHHHHHHHHHHHHHHHHHhhHHHHHHcccc-----------c
Q psy5300 39 IILAILAVLSFVGNVLTIISIRKNRVHRGLRQHSWNGVYTLILHLSVADLFVTVFCLAGEAVWSYTVE-----------W 107 (177)
Q Consensus 39 ~~~~~~~~~gi~~N~~vi~~i~~~~~~~~~~~~~~~~~~~~l~~La~sDll~~l~~~~~~~~~~~~~~-----------~ 107 (177)
+++.+.+.+|++.|.+.++.+.++.-..= ++-.+++.|-|+.|++.+.... ........++ .
T Consensus 3 i~~~~~~~~~~~~n~~Ll~~i~~~tp~~l------~~~~~~l~~~~~~~~~~~~~~~-~~q~R~i~~~~~~~~~~~GpC~ 75 (292)
T PF10317_consen 3 IYHPIFFILGIILNILLLYLIIFKTPKSL------RTYSILLLNTAIFDLISIISAF-LTQPRIIPNGTSIAVISYGPCR 75 (292)
T ss_pred EeHHHHHHHHHHHHHHHHHHHHHhChHHH------HHHHHHHHHHHHHHHHHHHHHH-HhhhhccCCCCcEEEEeeecce
Confidence 35678899999999999988877753321 6777899999999999876433 2222222221 1
Q ss_pred ccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCccccccchhHHHHHHHHHHHHHhhc
Q psy5300 108 LWGNMSCKLFKFLQMFSLYLSTFILVLIGIDRFLAVRYPMKSISTSSRCCKFVIGAWILSALCSL 172 (177)
Q Consensus 108 ~~~~~~C~~~~~~~~~~~~~s~~~l~~isidRy~ai~~p~~~~~t~~~~~~~i~~~W~~s~~~~~ 172 (177)
..|+..|.........+...+.+++..--.-||.++.++.. ++++....+...+..++...+
T Consensus 76 ~~~~~~C~~~y~~~~~~~~~s~~~i~~sf~yRy~iL~~~~~---~~~~~i~~~~l~~~p~~~~~i 137 (292)
T PF10317_consen 76 YFGPWFCFFCYHIMLHFSIHSGWSIILSFYYRYYILRNPSP---SRKRIIFICILIYIPSFSMLI 137 (292)
T ss_pred ecCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCC---chhHHHHHHHHHHHHHHHHHH
Confidence 24567787777788888888888888888999999998654 556666666666666555433
No 19
>PF10292 7TM_GPCR_Srab: Serpentine type 7TM GPCR receptor class ab chemoreceptor; InterPro: IPR019408 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. Srab is part of the Sra superfamily of chemoreceptors. The expression pattern of the srab genes is biologically intriguing. Of the six promoters successfully expressed in transgenic organisms, one was exclusively expressed in the tail phasmid neurons, two were exclusively expressed in a head amphid neuron, and two were expressed both in the head and tail neurons as well as a limited number of other cells [].
Probab=97.82 E-value=0.0014 Score=51.93 Aligned_cols=127 Identities=14% Similarity=0.165 Sum_probs=91.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcccccccccccCCchHHHHHHHHHHHHHHHHHHHhhHHHHH---Hcc--c--ccc
Q psy5300 36 SRAIILAILAVLSFVGNVLTIISIRKNRVHRGLRQHSWNGVYTLILHLSVADLFVTVFCLAGEAVW---SYT--V--EWL 108 (177)
Q Consensus 36 ~~~~~~~~~~~~gi~~N~~vi~~i~~~~~~~~~~~~~~~~~~~~l~~La~sDll~~l~~~~~~~~~---~~~--~--~~~ 108 (177)
....+..+++++|++.++..++...+++..| ....+++...+++.++.++........+ ... + +..
T Consensus 18 ~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~H-------~N~ril~~~~~~~~l~~~~~r~~~h~~~l~~~~~~~~~Cd~~ 90 (324)
T PF10292_consen 18 LSLIFNLLLSIIAFPVIIYALWKIRNSKLFH-------FNTRILFIVHCFSFLIHCTGRIILHTYDLYNYFFPDDPCDMI 90 (324)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcchhc-------hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCcccc
Confidence 3445677888999999999999998888888 7888999999999998876443332222 222 1 233
Q ss_pred cccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCccccccchhHHH-HHHHHHHHHH
Q psy5300 109 WGNMSCKLFKFLQMFSLYLSTFILVLIGIDRFLAVRYPMKSISTSSRCCKF-VIGAWILSAL 169 (177)
Q Consensus 109 ~~~~~C~~~~~~~~~~~~~s~~~l~~isidRy~ai~~p~~~~~t~~~~~~~-i~~~W~~s~~ 169 (177)
.+..-|-.......++...+..+..++.+||++|..+.-++-..++..+.. ..+.|++++.
T Consensus 91 ~~~~~C~~lR~~~~~~~~~~~~t~v~l~IER~iAT~~~~~YE~~~~~~Gi~l~~~qi~is~~ 152 (324)
T PF10292_consen 91 PSTYRCFILRIPYNFGLFLVSFTTVSLVIERTIATFFSKSYEKSGKWLGILLAFFQILISLL 152 (324)
T ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhcCCCccHHHHHHHHHHHHHHH
Confidence 456688888888999999999999999999999999987633333344333 3444555544
No 20
>PF03402 V1R: Vomeronasal organ pheromone receptor family, V1R; InterPro: IPR004072 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The rhodopsin-like GPCRs themselves represent a widespread protein family that includes hormone, neurotransmitter and light receptors, all of which transduce extracellular signals through interaction with guanine nucleotide-binding (G) proteins. Although their activating ligands vary widely in structure and character, the amino acid sequences of the receptors are very similar and are believed to adopt a common structural framework comprising 7 transmembrane (TM) helices [, , ]. Pheromones have evolved in all animal phyla, to signal sex and dominance status, and are responsible for stereotypical social and sexual behaviour among members of the same species. In mammals, these chemical signals are believed to be detected primarily by the vomeronasal organ (VNO), a chemosensory organ located at the base of the nasal septum []. The VNO is present in most amphibia, reptiles and non-primate mammals but is absent in birds, adult catarrhine monkeys and apes []. An active role for the human VNO in the detection of pheromones is disputed; the VNO is clearly present in the foetus but appears to be atrophied or absent in adults. Three distinct families of putative pheromone receptors have been identified in the vomeronasal organ (V1Rs, V2Rs and V3Rs). All are G protein-coupled receptors but are only distantly related to the receptors of the main olfactory system, highlighting their different role []. The V1 receptors share between 50 and 90% sequence identity but have little similarity to other families of G protein-coupled receptors. They appear to be distantly related to the mammalian T2R bitter taste receptors and the rhodopsin-like GPCRs []. In rat, the family comprises 30-40 genes. These are expressed in the apical regions of the VNO, in neurons expressing Gi2. Coupling of the receptors to this protein mediates inositol trisphosphate signalling []. A number of human V1 receptor homologues have also been found. The majority of these human sequences are pseudogenes [] but an apparently functional receptor has been identified that is expressed in the human olfactory system [].; GO: 0016503 pheromone receptor activity, 0007186 G-protein coupled receptor protein signaling pathway, 0016021 integral to membrane
Probab=97.67 E-value=0.00016 Score=55.62 Aligned_cols=101 Identities=14% Similarity=0.263 Sum_probs=76.0
Q ss_pred cCCchHHHHHHHHHHHHHHHHHHHhhHHHHHHcccccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCC--c
Q psy5300 71 HSWNGVYTLILHLSVADLFVTVFCLAGEAVWSYTVEWLWGNMSCKLFKFLQMFSLYLSTFILVLIGIDRFLAVRYPM--K 148 (177)
Q Consensus 71 ~~~~~~~~~l~~La~sDll~~l~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~s~~~l~~isidRy~ai~~p~--~ 148 (177)
++.+|.+..+.+||++|.+..+.-..+........+ .+++..||+..++.-...+.|+.+.+.+|+-+-+.|.-.- +
T Consensus 6 ~r~kp~dlIl~hLa~aN~lvLl~rGip~~~~~~~~~-~~~d~gCK~v~Y~~RV~RglSictTCLLSvfQAItISP~~s~w 84 (265)
T PF03402_consen 6 HRLKPIDLILIHLALANILVLLSRGIPQTMAFFGWK-FFDDIGCKIVFYIYRVARGLSICTTCLLSVFQAITISPSNSRW 84 (265)
T ss_pred CCCCcHHHHHHHHHHHHHHHHHHhhHHHHHHHhhcc-cCCCceeeeeeeehHHhchhhHHhhhHHHHHhhEEEecCCchh
Confidence 455899999999999999987654444444433323 4588999999999999999999999999997776664332 2
Q ss_pred ---cccccchhHHHHHHHHHHHHHhhc
Q psy5300 149 ---SISTSSRCCKFVIGAWILSALCSL 172 (177)
Q Consensus 149 ---~~~t~~~~~~~i~~~W~~s~~~~~ 172 (177)
+...++.....+...|++.++...
T Consensus 85 ~~lK~k~pk~i~~~~~~~Wilnlli~~ 111 (265)
T PF03402_consen 85 AELKVKAPKYIGPSCLFCWILNLLINI 111 (265)
T ss_pred hhhhhhcCCccccHHHHHHHHHHhhhc
Confidence 345566677778889998887653
No 21
>PF10316 7TM_GPCR_Srbc: Serpentine type 7TM GPCR chemoreceptor Srbc ; InterPro: IPR019420 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class b (Srb) from the Sra superfamily []. Srb receptors contain 6-8 hydrophobic, putative transmembrane, regions and can be distinguished from other 7TM GPCR receptors by their own characteristic TM signatures. Srbc is a solo family amongst the superfamilies of chemoreceptors.
Probab=97.37 E-value=0.0043 Score=48.04 Aligned_cols=106 Identities=16% Similarity=0.144 Sum_probs=72.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcccccccccccCCchHHHHHHHHHHHHHHHHHHHhhHHHHHHcc---cccccccc
Q psy5300 36 SRAIILAILAVLSFVGNVLTIISIRKNRVHRGLRQHSWNGVYTLILHLSVADLFVTVFCLAGEAVWSYT---VEWLWGNM 112 (177)
Q Consensus 36 ~~~~~~~~~~~~gi~~N~~vi~~i~~~~~~~~~~~~~~~~~~~~l~~La~sDll~~l~~~~~~~~~~~~---~~~~~~~~ 112 (177)
....+-.+.+.+....|...++.+..+|+ ++ ++...++---...|.+.+....+........ ++....+.
T Consensus 7 iv~~i~i~~s~~~~~iN~~lL~~if~~Kk-~k------k~~l~LfY~Rf~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (273)
T PF10316_consen 7 IVSIIGIIFSIITCLINFYLLYSIFYSKK-KK------KPDLSLFYFRFAIDVFYGFSVFIYLIYYILFSLFPEFLDYKN 79 (273)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccc-cC------CCCEEeeHHHHHHHHHHHHHHHHHHHHHHHHHhChhhhcccc
Confidence 34455667888999999999999997777 52 5555566667899999988766554444332 11111122
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCc
Q psy5300 113 SCKLFKFLQMFSLYLSTFILVLIGIDRFLAVRYPMK 148 (177)
Q Consensus 113 ~C~~~~~~~~~~~~~s~~~l~~isidRy~ai~~p~~ 148 (177)
.=-+.+.-..............||+||..|+..|..
T Consensus 80 ~if~~~~p~~~~~~iR~~l~~~Ia~dR~~A~~fPI~ 115 (273)
T PF10316_consen 80 LIFYIGWPSSNLGSIRSILALIIALDRVFAVYFPIF 115 (273)
T ss_pred EEeehhhhHHHHHHHHHHHHHHHHHHHHHHHcCCHH
Confidence 223334445555677788889999999999999985
No 22
>PF10326 7TM_GPCR_Str: Serpentine type 7TM GPCR chemoreceptor Str; InterPro: IPR019428 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class r (Str) from the Str superfamily [, ]. Almost a quarter (22.5%) of str and srj family genes and pseudogenes in C. elegans appear to have been newly formed by gene duplications since the species split [].
Probab=96.72 E-value=0.002 Score=50.57 Aligned_cols=109 Identities=17% Similarity=0.107 Sum_probs=73.0
Q ss_pred HHHHHHHHHHHHHHHHHHhhcccccccccccCCchHHHHHHHHHHHHHHHHHHHhhHHHHHHcc----------cccccc
Q psy5300 41 LAILAVLSFVGNVLTIISIRKNRVHRGLRQHSWNGVYTLILHLSVADLFVTVFCLAGEAVWSYT----------VEWLWG 110 (177)
Q Consensus 41 ~~~~~~~gi~~N~~vi~~i~~~~~~~~~~~~~~~~~~~~l~~La~sDll~~l~~~~~~~~~~~~----------~~~~~~ 110 (177)
.-+.++++++.|.+.++.+.++.+++- ..=.+++...|+.|+..++.-.......... +++..+
T Consensus 5 ~~~~~~~s~~~N~~Li~Li~~~s~k~~------G~Yk~Lm~~fs~~~i~fs~~~~~~~P~~~~~~~~~~~~~~~~~~~~~ 78 (307)
T PF10326_consen 5 QYIGFVLSLFLNSLLIYLILTKSPKSL------GSYKYLMIYFSIFEIIFSILDFLVQPIIHSYGSSFVVFSDSGPFFLS 78 (307)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccCCCC------CCEEEEEehhHHHHHHHHHHHHHHHhceeecCCeeEEEeeccccccc
Confidence 346778999999999999876654431 2222567778999999887655443333211 122334
Q ss_pred cchhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCc-cccccch
Q psy5300 111 NMSCKLFKFLQMFSLYLSTFILVLIGIDRFLAVRYPMK-SISTSSR 155 (177)
Q Consensus 111 ~~~C~~~~~~~~~~~~~s~~~l~~isidRy~ai~~p~~-~~~t~~~ 155 (177)
+...+........+.+.+...++.--+.||.++++|.+ +....++
T Consensus 79 ~~~~~~l~~~y~~~f~~~~~llaihFiYRY~av~~~~~l~~f~~~~ 124 (307)
T PF10326_consen 79 KSIGQILLAIYCGCFGMSFSLLAIHFIYRYWAVCRPKKLRYFSGWR 124 (307)
T ss_pred chheeehhhhhhhhHHHHHHHHHhHhhhheeeeccchhhccccccc
Confidence 45566666777777778888888888999999999997 4444333
No 23
>PF02118 Srg: Srg family chemoreceptor; InterPro: IPR000609 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class g (Srg) from the Srg superfamily [, ]. Srg receptors contain seven hydrophobic, putative transmembrane, regions and can be distinguished from other 7TM GPCR receptors by their own characteristic TM signatures. ; GO: 0004888 transmembrane signaling receptor activity, 0007606 sensory perception of chemical stimulus, 0016020 membrane
Probab=96.51 E-value=0.014 Score=44.87 Aligned_cols=102 Identities=17% Similarity=0.258 Sum_probs=70.8
Q ss_pred HHHHHHHHHHHHHHHHHHhhcccc--cccccccCCchHHHHHHHHHHHHHHHHHHHhhH-HHHHHccc------c-cccc
Q psy5300 41 LAILAVLSFVGNVLTIISIRKNRV--HRGLRQHSWNGVYTLILHLSVADLFVTVFCLAG-EAVWSYTV------E-WLWG 110 (177)
Q Consensus 41 ~~~~~~~gi~~N~~vi~~i~~~~~--~~~~~~~~~~~~~~~l~~La~sDll~~l~~~~~-~~~~~~~~------~-~~~~ 110 (177)
..+-++.+++.+..+++.+.++++ ..+ ++.+-+...-++.|++.-+...+. .......+ . .+..
T Consensus 4 ~~~Ygi~s~~l~~~~~~~i~~~~~~~~~~------~sFy~l~~~d~~~ni~~~ln~~~~~Rl~~~~~~~~~~~~~~~~~~ 77 (275)
T PF02118_consen 4 QLIYGIPSLILYIFILYVIWKSKKKSYFK------SSFYRLYIMDLIMNILTYLNTWITLRLPSYTPPFCPFFLPFFENP 77 (275)
T ss_pred ehhHHHHHHHHHHHHHHHHHHhccccccC------CccHHHHHHHhHHHHHHHHHHHHHHHhccccCccchhHHHHHcCC
Confidence 356678888999999999988888 311 777777777777777664432221 11111000 0 1223
Q ss_pred cchhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCc
Q psy5300 111 NMSCKLFKFLQMFSLYLSTFILVLIGIDRFLAVRYPMK 148 (177)
Q Consensus 111 ~~~C~~~~~~~~~~~~~s~~~l~~isidRy~ai~~p~~ 148 (177)
+...++..++.+.+..+...+...+++||+-++..|.+
T Consensus 78 ~~~l~~~~~l~~~~~~~Q~~~~~~is~nR~t~v~~p~~ 115 (275)
T PF02118_consen 78 PFFLNIFYFLQYYFAYVQYLSTILISLNRFTSVLFPIR 115 (275)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHh
Confidence 44667777888889999999999999999999999986
No 24
>PF00002 7tm_2: 7 transmembrane receptor (Secretin family); InterPro: IPR000832 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The secretin-like GPCRs include secretin [], calcitonin [], parathyroid hormone/parathyroid hormone-related peptides [] and vasoactive intestinal peptide [], all of which activate adenylyl cyclase and the phosphatidyl-inositol-calcium pathway. These receptors contain seven transmembrane regions, in a manner reminiscent of the rhodopsins and other receptors believed to interact with G-proteins (however there is no significant sequence identity between these families, the secretin-like receptors thus bear their own unique '7TM' signature). Their N terminus is probably located on the extracellular side of the membrane and potentially glycosylated. This N-terminal region contains a long conserved region which allow the binding of large peptidic ligand such as glucagon, secretin, VIP and PACAP; this region contains five conserved cysteines residues which could be involved in disulphide bond. The C-terminal region of these receptor is probably cytoplasmic. Every receptor gene in this family is encoded on multiple exons, and several of these genes are alternatively spliced to yield functionally distinct products. ; GO: 0004930 G-protein coupled receptor activity, 0007186 G-protein coupled receptor protein signaling pathway, 0016021 integral to membrane; PDB: 3L2J_A 1BL1_A.
Probab=96.47 E-value=0.0015 Score=49.41 Aligned_cols=124 Identities=19% Similarity=0.182 Sum_probs=3.3
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcccccccccccCCchHHHHHHHHHHHHHHHHHHHhhHHHHHHcccccccccchhhHHHH
Q psy5300 40 ILAILAVLSFVGNVLTIISIRKNRVHRGLRQHSWNGVYTLILHLSVADLFVTVFCLAGEAVWSYTVEWLWGNMSCKLFKF 119 (177)
Q Consensus 40 ~~~~~~~~gi~~N~~vi~~i~~~~~~~~~~~~~~~~~~~~l~~La~sDll~~l~~~~~~~~~~~~~~~~~~~~~C~~~~~ 119 (177)
+..+-+.+++++-.+.+......|++| +.++....||++++++..+..+.. ......+..+..+..|+..+.
T Consensus 6 i~~vg~~~Si~~ll~~i~~~~~~r~lr-------~~~~~i~~~l~~sll~~~~~~l~~-~~~~~~~~~~~~~~~C~~~a~ 77 (242)
T PF00002_consen 6 ISYVGCSLSIICLLLTIITYLLFRKLR-------SFRNKIHLNLCLSLLLANLSFLIG-ISQTFSPISTTNHCLCRAIAI 77 (242)
T ss_dssp HHHHHHH-------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhc-------ccchhhhhhhHHHHHHHHHHHhee-hhhccccccccccccchhhhh
Confidence 344455555666555565555557776 556778899999999887654432 111111111112235999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhcCCccccccchhHHHHHHHHHHHHHhhcC
Q psy5300 120 LQMFSLYLSTFILVLIGIDRFLAVRYPMKSISTSSRCCKFVIGAWILSALCSLP 173 (177)
Q Consensus 120 ~~~~~~~~s~~~l~~isidRy~ai~~p~~~~~t~~~~~~~i~~~W~~s~~~~~p 173 (177)
+.+.+..++..=+.+.++|-|..+.++..+. +++........|...++....
T Consensus 78 ~~hy~~la~f~Wm~~~~~~l~~~~~~~~~~~--~~~~~~~~~~gwg~P~~iv~i 129 (242)
T PF00002_consen 78 LLHYFFLASFFWMLVEAFYLYRLLVKVFNSS--RRRFWWYYLIGWGIPALIVVI 129 (242)
T ss_dssp ------------------------------------------------------
T ss_pred HhHHHHHHHHHHHHHHHHHhheeEEEeeccc--chhhheeeeeeecCcceeeee
Confidence 9999998888889999999999998874322 344445556667766655443
No 25
>PF02117 7TM_GPCR_Sra: Serpentine type 7TM GPCR chemoreceptor Sra; InterPro: IPR000344 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class a (Sra) from the Sra superfamily []. Sra receptors contain 6-7 hydrophobic, putative transmembrane, regions and can be distinguished from other 7TM GPCR receptors by their own characteristic TM signatures.; GO: 0004888 transmembrane signaling receptor activity, 0007606 sensory perception of chemical stimulus, 0016021 integral to membrane
Probab=96.22 E-value=0.15 Score=40.67 Aligned_cols=108 Identities=19% Similarity=0.294 Sum_probs=77.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcccccccccccCCchHHHHHHHHHHHHHHHHHHHhhHHHHHH----ccc----c
Q psy5300 35 SSRAIILAILAVLSFVGNVLTIISIRKNRVHRGLRQHSWNGVYTLILHLSVADLFVTVFCLAGEAVWS----YTV----E 106 (177)
Q Consensus 35 ~~~~~~~~~~~~~gi~~N~~vi~~i~~~~~~~~~~~~~~~~~~~~l~~La~sDll~~l~~~~~~~~~~----~~~----~ 106 (177)
.....+..++.+++.++...++-.+.++.-.+. +...+++.+|..+++=.... ........ +.. +
T Consensus 21 ~~~~~~~~~~~~~t~~~s~~Ai~~l~~ksif~~------sTr~LL~~~l~~a~~Hq~~y-~~~~~~~lyrsf~~~~dpC~ 93 (328)
T PF02117_consen 21 RINQIFILIIIIITFIFSVFAIKKLWKKSIFSN------STRILLISNLLFANIHQISY-AIIQIWSLYRSFFYSDDPCS 93 (328)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCc------cHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHhcCCCCee
Confidence 445556777888888999888888888777764 77777888888777654332 11111111 111 3
Q ss_pred cccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCcc
Q psy5300 107 WLWGNMSCKLFKFLQMFSLYLSTFILVLIGIDRFLAVRYPMKS 149 (177)
Q Consensus 107 ~~~~~~~C~~~~~~~~~~~~~s~~~l~~isidRy~ai~~p~~~ 149 (177)
....+..|........++.....+.-.++.+||.+|...|-..
T Consensus 94 i~f~~~eC~~~~~~~~~~~~~~~~~q~aL~idRl~at~~~~~~ 136 (328)
T PF02117_consen 94 ILFTSSECFPYYYFYYFTNSGMIFIQFALTIDRLLATFFPKYY 136 (328)
T ss_pred eEeecCceeeeehHHHHHHHHHHHHHHHHHHHHHHHHhchhhh
Confidence 4456778999999999999999999999999999999888643
No 26
>PF03383 Serpentine_r_xa: Caenorhabditis serpentine receptor-like protein, class xa; InterPro: IPR005047 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class xa (Srxa), from the Str superfamily [].
Probab=95.47 E-value=0.014 Score=41.05 Aligned_cols=57 Identities=25% Similarity=0.300 Sum_probs=44.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhcCCcc--ccccchhHHHHHHHHHHHHHhhcCc
Q psy5300 118 KFLQMFSLYLSTFILVLIGIDRFLAVRYPMKS--ISTSSRCCKFVIGAWILSALCSLPQ 174 (177)
Q Consensus 118 ~~~~~~~~~~s~~~l~~isidRy~ai~~p~~~--~~t~~~~~~~i~~~W~~s~~~~~p~ 174 (177)
..+.+++.....+...+|+++|-.++.+|+++ ..|.+|.+.-+.++.++.+..-+.|
T Consensus 48 TL~~tf~Yl~plfltvLMti~Ri~iV~~P~~~~~~Fs~~kl~~YC~~i~i~~~i~LlIP 106 (153)
T PF03383_consen 48 TLFGTFSYLHPLFLTVLMTINRIYIVLFPFGSEIWFSDKKLWIYCGIIAILSFISLLIP 106 (153)
T ss_pred eeeehHHHHHHHHHHHHHHHhheEEEEecCCCccccccchhHHHHHHHHHHHHHHHHhh
Confidence 34566777778888899999999999999986 6898888887776666666554444
No 27
>PF02101 Ocular_alb: Ocular albinism type 1 protein; InterPro: IPR001414 Ocular albinism type 1 (OA1) is an X-linked disorder characterised by severe impairment of visual acuity, retinal hypopigmentation and the presence of macromelanosomes. A novel transcript from the OA1 critical region is expressed in high levels in RNA samples from retina and from melanoma and encodes a potential integral membrane protein []. This protein is of unknown function but is known to bind heterotrimeric G proteins.; GO: 0016020 membrane
Probab=95.04 E-value=1.4 Score=35.75 Aligned_cols=105 Identities=18% Similarity=0.280 Sum_probs=64.3
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcccccccccccCCchHHHHHHHHHHHHHHHHHHHhhHHHHHHcccccc-----------
Q psy5300 40 ILAILAVLSFVGNVLTIISIRKNRVHRGLRQHSWNGVYTLILHLSVADLFVTVFCLAGEAVWSYTVEWL----------- 108 (177)
Q Consensus 40 ~~~~~~~~gi~~N~~vi~~i~~~~~~~~~~~~~~~~~~~~l~~La~sDll~~l~~~~~~~~~~~~~~~~----------- 108 (177)
+.+..+.+|+.|-++-++--+|... ++.+..+.....-.+..++++|++.++-.+.-...+...++..
T Consensus 32 vCLgSs~l~l~gallQLlp~rr~~~-~~~~~~sp~~~~rIl~~la~aDlLaclGVivRS~vWl~~p~~~~s~s~~~~~d~ 110 (405)
T PF02101_consen 32 VCLGSSVLSLLGALLQLLPRRRSAG-PRAPARSPSSSRRILFWLAVADLLACLGVIVRSSVWLGFPNFIDSISDVNGTDI 110 (405)
T ss_pred hHHHHHHHHHHHHHHhhcccccccc-ccccccCCcCCchhHHHHHHHHHHhhhhHHHHhhhhhcCCcccccccCCCCCcc
Confidence 3444555555555554443222221 1112222122334788999999999886665555554333221
Q ss_pred cccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhc
Q psy5300 109 WGNMSCKLFKFLQMFSLYLSTFILVLIGIDRFLAVRY 145 (177)
Q Consensus 109 ~~~~~C~~~~~~~~~~~~~s~~~l~~isidRy~ai~~ 145 (177)
.+...|.....-..++..++.+=..+-++|-|+.+.+
T Consensus 111 wp~afCv~ss~WIq~fYsAtfwWtfcYAVDv~Lv~~~ 147 (405)
T PF02101_consen 111 WPAAFCVGSSMWIQLFYSATFWWTFCYAVDVYLVIRR 147 (405)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhheeec
Confidence 2346888877777778888888889999999998755
No 28
>PF10327 7TM_GPCR_Sri: Serpentine type 7TM GPCR chemoreceptor Sri; InterPro: IPR019429 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents Sri, which is part of the Str superfamily of chemoreceptors.
Probab=94.59 E-value=0.87 Score=35.86 Aligned_cols=115 Identities=16% Similarity=0.110 Sum_probs=72.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcccccccccccCCchHHHHH---HHHHHHHHHHHHHHhhHHHHHHccccccccc
Q psy5300 35 SSRAIILAILAVLSFVGNVLTIISIRKNRVHRGLRQHSWNGVYTLI---LHLSVADLFVTVFCLAGEAVWSYTVEWLWGN 111 (177)
Q Consensus 35 ~~~~~~~~~~~~~gi~~N~~vi~~i~~~~~~~~~~~~~~~~~~~~l---~~La~sDll~~l~~~~~~~~~~~~~~~~~~~ 111 (177)
.+....+=++|.++++.|.+.++.+..+.++-+ +-+++++ ....++|+-.+.+..|.-.....++ +..|
T Consensus 9 ~~li~~~~~ig~iS~~~n~~~iyLi~fks~k~~------~fry~ll~~Qi~~~l~di~~t~L~qpipLfP~~ag-y~~G- 80 (303)
T PF10327_consen 9 QWLINYYHIIGVISFILNSLGIYLIIFKSPKLD------NFRYYLLYFQISCTLTDIHLTFLMQPIPLFPIPAG-YCVG- 80 (303)
T ss_pred HHHHHHHHHHHHHHHHHHHHHheeEEEecCCcc------chhhHHHHHHHHHHHhhhhhhhhccchhhcceeEE-EEEe-
Confidence 577788889999999999999988876654431 4444433 3456789988887777655554432 2222
Q ss_pred chhh-------HHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCccccccchhH
Q psy5300 112 MSCK-------LFKFLQMFSLYLSTFILVLIGIDRFLAVRYPMKSISTSSRCC 157 (177)
Q Consensus 112 ~~C~-------~~~~~~~~~~~~s~~~l~~isidRy~ai~~p~~~~~t~~~~~ 157 (177)
.+|+ ..............-.+..--+-|+.++.+..++..-++...
T Consensus 81 ~l~~~f~i~~h~~~~i~~~l~~~q~~~L~~CF~~KHQaIa~i~~~~~l~~~~~ 133 (303)
T PF10327_consen 81 FLARYFGISSHYLMTIWIFLFIFQIESLVICFLRKHQAIARILSKHVLPKWFY 133 (303)
T ss_pred ehhhcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCcCcHHHH
Confidence 2333 233344444555555555556889999999887433334433
No 29
>PF10318 7TM_GPCR_Srh: Serpentine type 7TM GPCR chemoreceptor Srh; InterPro: IPR019422 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. Srh is part of the Str superfamily of chemoreceptors [].
Probab=93.79 E-value=1.7 Score=33.92 Aligned_cols=133 Identities=13% Similarity=0.086 Sum_probs=76.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcccccccccccCCchHHHHHHHHH----HHHHHHHHHHhhHHHHHHcc----ccc
Q psy5300 36 SRAIILAILAVLSFVGNVLTIISIRKNRVHRGLRQHSWNGVYTLILHLS----VADLFVTVFCLAGEAVWSYT----VEW 107 (177)
Q Consensus 36 ~~~~~~~~~~~~gi~~N~~vi~~i~~~~~~~~~~~~~~~~~~~~l~~La----~sDll~~l~~~~~~~~~~~~----~~~ 107 (177)
......=++..++++-|.+..+.+.++...+- +.....+.++. +.|+..+.+..|........ +-.
T Consensus 5 ~~~~~~h~~~~i~~Pi~~~~~y~Il~ktp~~m------~~~k~~ll~~~~~~~~~d~~~~~l~~P~~~~P~~~~~~~G~l 78 (302)
T PF10318_consen 5 FYSIVLHIITIISIPIYIFGFYCILFKTPKSM------KSVKWYLLNHHFWNFLLDLYLSFLIIPYFFFPSPAGYPLGIL 78 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHheeEeChhhh------HHHHHHHHHHHHHHHHHHHHhhhEEeeeeccchHHhhCCcch
Confidence 34455567888999999999998877754431 34444455544 56777776666543322211 111
Q ss_pred ccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCccccccchhHHHHHHHHHHHHHhhcCc
Q psy5300 108 LWGNMSCKLFKFLQMFSLYLSTFILVLIGIDRFLAVRYPMKSISTSSRCCKFVIGAWILSALCSLPQ 174 (177)
Q Consensus 108 ~~~~~~C~~~~~~~~~~~~~s~~~l~~isidRy~ai~~p~~~~~t~~~~~~~i~~~W~~s~~~~~p~ 174 (177)
..-+.-..++.+...........+...+--+||.++..+-++...++.........++.+....+|.
T Consensus 79 ~~~gv~~~~q~~i~~~~~~~~~~S~~~lFe~R~~~i~~~~~~~~~~~~r~~~~~~~y~~~~~~~~~~ 145 (302)
T PF10318_consen 79 SYFGVPTPIQFYIGVTLLAFVGVSILSLFENRYQIIIRNRSRSLWKKIRIIFIIFNYIIAFLFFIPI 145 (302)
T ss_pred hhcccChHHHHHHHHHHhhhhhHHHHHHHHHHHHHHhcccccccchhhHHHHHHHHHHHHHHHHHHH
Confidence 1112345666666777777777788888899999998764422222222222344455555554443
No 30
>PF06681 DUF1182: Protein of unknown function (DUF1182); InterPro: IPR010601 This family consists of several hypothetical proteins of around 360 residues in length and seems to be specific to Caenorhabditis elegans. The function of this family is unknown.
Probab=93.25 E-value=1.8 Score=32.19 Aligned_cols=99 Identities=16% Similarity=0.117 Sum_probs=59.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcccccc-cccccCCchHHHHHHHHHHHHHHHHHHHhhHHHHHH-----cc--cccccc
Q psy5300 39 IILAILAVLSFVGNVLTIISIRKNRVHR-GLRQHSWNGVYTLILHLSVADLFVTVFCLAGEAVWS-----YT--VEWLWG 110 (177)
Q Consensus 39 ~~~~~~~~~gi~~N~~vi~~i~~~~~~~-~~~~~~~~~~~~~l~~La~sDll~~l~~~~~~~~~~-----~~--~~~~~~ 110 (177)
..=.++...+.+.+.+...-++++|++. ++| ++= .++-+..-++..|...... .. .+-+.+
T Consensus 45 ~~e~~v~~~s~~~s~~L~ifi~~rk~l~~~~k-----sTI------vFaT~g~fvLtlP~~lf~~wl~~~l~~~~ep~yt 113 (226)
T PF06681_consen 45 TVEFIVNTVSWLFSYFLCIFIWRRKNLIRSYK-----STI------VFATFGQFVLTLPLYLFQTWLVFFLWFGHEPQYT 113 (226)
T ss_pred HHHHHHHhHHHHHHHHHHHHHhhhHHHHHhhc-----CeE------EEeeHHHHHHHHHHHHHHHHHHHHHhcCCCceEE
Confidence 3345566677777777666676666653 222 111 1122222233344333222 21 233446
Q ss_pred cchhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCc
Q psy5300 111 NMSCKLFKFLQMFSLYLSTFILVLIGIDRFLAVRYPMK 148 (177)
Q Consensus 111 ~~~C~~~~~~~~~~~~~s~~~l~~isidRy~ai~~p~~ 148 (177)
-..|.+...+...........-+++|++||+.|....|
T Consensus 114 I~vCSflk~f~S~t~s~~~vip~aVAIyRy~~VV~k~r 151 (226)
T PF06681_consen 114 IFVCSFLKNFTSSTTSCAQVIPVAVAIYRYLIVVLKKR 151 (226)
T ss_pred EEeehHHHhHHHHHhhhhccchhhhhhhhhheeeeccc
Confidence 67999988777777777777777899999999988665
No 31
>PF10319 7TM_GPCR_Srj: Serpentine type 7TM GPCR chemoreceptor Srj; InterPro: IPR019423 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class j (Srj) from the Str superfamily [, ]. The Srj family is designated as the out-group based on its location in preliminary phylogenetic analyses of the entire superfamily [].
Probab=90.44 E-value=5.2 Score=31.67 Aligned_cols=101 Identities=16% Similarity=0.039 Sum_probs=64.6
Q ss_pred HHHHHHHHHHHHHHHHHhhcccccccccccCCchHHHHHHHHHHHHHHHHHHH--hhHHHHHH-------ccccc-cccc
Q psy5300 42 AILAVLSFVGNVLTIISIRKNRVHRGLRQHSWNGVYTLILHLSVADLFVTVFC--LAGEAVWS-------YTVEW-LWGN 111 (177)
Q Consensus 42 ~~~~~~gi~~N~~vi~~i~~~~~~~~~~~~~~~~~~~~l~~La~sDll~~l~~--~~~~~~~~-------~~~~~-~~~~ 111 (177)
-+.++++.+.|-+.++.+..+|+.+= ..=.+++..-|+-|++.++.- +|..+... ..+++ ....
T Consensus 12 k~~~~lsf~~Np~fiyli~~~~~~~~------G~Yr~LL~~Fa~fn~~~S~~~~~vp~~vh~yry~F~~fi~dG~F~~~s 85 (310)
T PF10319_consen 12 KIFGILSFIVNPIFIYLIFTEKKSQF------GNYRYLLLFFAIFNLIYSVVDLLVPICVHGYRYAFVVFISDGPFFEKS 85 (310)
T ss_pred HHHHHHHHHHhhhhheeEEccccccc------ccHHHHHHHHHHHHHHHHHHHHHhhheeeccceEEEEEEcCCcCcCcc
Confidence 45788899999999999998887762 233368888999999998743 33222221 11111 1112
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCc
Q psy5300 112 MSCKLFKFLQMFSLYLSTFILVLIGIDRFLAVRYPMK 148 (177)
Q Consensus 112 ~~C~~~~~~~~~~~~~s~~~l~~isidRy~ai~~p~~ 148 (177)
..-.........+...|-..+..==+.||+++++|..
T Consensus 86 ~l~~~~ls~RCsfIs~sYaIL~~HFvYRYl~l~~~~~ 122 (310)
T PF10319_consen 86 ELGQHLLSIRCSFISGSYAILHIHFVYRYLVLFNSKF 122 (310)
T ss_pred hHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhCcHH
Confidence 2333444455555556666666667999999999864
No 32
>PF04789 DUF621: Protein of unknown function (DUF621); InterPro: IPR006874 This is a conserved region found in uncharacterised proteins from Caenorhabditis elegans, and is noted to have possible G-protein-coupled receptor-like activity.
Probab=89.91 E-value=7.9 Score=30.19 Aligned_cols=96 Identities=17% Similarity=0.261 Sum_probs=61.8
Q ss_pred chHHHHHHHHHHHHHHHHHHH----hhHHHHHHcccccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCc-
Q psy5300 74 NGVYTLILHLSVADLFVTVFC----LAGEAVWSYTVEWLWGNMSCKLFKFLQMFSLYLSTFILVLIGIDRFLAVRYPMK- 148 (177)
Q Consensus 74 ~~~~~~l~~La~sDll~~l~~----~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~s~~~l~~isidRy~ai~~p~~- 148 (177)
-....|+..|.++-.+.+..- +|-........+... +..-.+..+...++-..-.++...+|++|......-.+
T Consensus 47 m~ffwFl~qlt~s~fi~S~lNl~inVPatlfsl~t~~~~~-s~~f~~~Sy~idf~h~siLfsNlviaIqR~fVFFfr~~t 125 (305)
T PF04789_consen 47 MKFFWFLTQLTISVFIISSLNLLINVPATLFSLITKEFVQ-SELFIFMSYLIDFCHYSILFSNLVIAIQRFFVFFFRNLT 125 (305)
T ss_pred chHHHHHHHHHHHHHHHHhhhheEeCcHHHHHhhhHHHhc-cchhhHHHHHHHHHHHHHHHHHHHHHHhhheeeeehhhh
Confidence 567789999999888776432 232222222222222 23446667777888888999999999999887764222
Q ss_pred -cccccchhHHHHHHHHHHHHHh
Q psy5300 149 -SISTSSRCCKFVIGAWILSALC 170 (177)
Q Consensus 149 -~~~t~~~~~~~i~~~W~~s~~~ 170 (177)
+...+.....=+..+|+++...
T Consensus 126 ~~~F~s~~iyiWL~~vWils~~v 148 (305)
T PF04789_consen 126 DKVFESPVIYIWLLLVWILSIGV 148 (305)
T ss_pred hhhccchHHHHHHHHHHHHHHHH
Confidence 3334445555578889888764
No 33
>PF02175 7TM_GPCR_Srb: Serpentine type 7TM GPCR chemoreceptor Srb; InterPro: IPR002184 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class b (Srb) from the Sra superfamily []. Srb receptors contain 6-8 hydrophobic, putative transmembrane, regions and can be distinguished from other 7TM GPCR receptors by their own characteristic TM signatures.; GO: 0004888 transmembrane signaling receptor activity, 0007606 sensory perception of chemical stimulus, 0016021 integral to membrane
Probab=87.88 E-value=10 Score=28.81 Aligned_cols=54 Identities=15% Similarity=0.192 Sum_probs=41.1
Q ss_pred cccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCccccccchhHHHH
Q psy5300 107 WLWGNMSCKLFKFLQMFSLYLSTFILVLIGIDRFLAVRYPMKSISTSSRCCKFV 160 (177)
Q Consensus 107 ~~~~~~~C~~~~~~~~~~~~~s~~~l~~isidRy~ai~~p~~~~~t~~~~~~~i 160 (177)
...++..+|.......+....+.+.-..+++||++|..+..++-.++...+-++
T Consensus 78 LiI~~~~~K~~h~~~~flmT~~ml~PigftIERfiAl~~A~~YE~~r~~LGPiL 131 (236)
T PF02175_consen 78 LIIDPTLFKYGHLTGLFLMTIPMLFPIGFTIERFIALKMAEKYENTRTLLGPIL 131 (236)
T ss_pred EEEchHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhccCceeehhHH
Confidence 345567888888899999999999999999999999988665444444444433
No 34
>KOG4193|consensus
Probab=87.53 E-value=18 Score=31.57 Aligned_cols=115 Identities=16% Similarity=0.212 Sum_probs=68.5
Q ss_pred HHHHHHHHHHHHHHHHhhcccccccccccCCchHHHHHHHHHHHHHHHHHHHhhHHHHHHcccccccccc-hhhHHHHHH
Q psy5300 43 ILAVLSFVGNVLTIISIRKNRVHRGLRQHSWNGVYTLILHLSVADLFVTVFCLAGEAVWSYTVEWLWGNM-SCKLFKFLQ 121 (177)
Q Consensus 43 ~~~~~gi~~N~~vi~~i~~~~~~~~~~~~~~~~~~~~l~~La~sDll~~l~~~~~~~~~~~~~~~~~~~~-~C~~~~~~~ 121 (177)
+-+.+.+++=.+.+.+..--|+++ +..+....||+++=++.-++ ..........+. .|+...++.
T Consensus 328 VG~~iSlvcL~lti~ty~~~~~l~-------~~~~~i~~~l~~~L~l~~l~-------fL~~~~~~~~~~~~C~~~a~ll 393 (610)
T KOG4193|consen 328 VGCIISLVCLLLTIATYLLFRKLQ-------NDRTKIHINLCLCLFLAELL-------FLLGIDRTSTSVVLCIAAAILL 393 (610)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHH-------hhcchhHHHHHHHHHHHHHH-------HhcccccccCcccccHHHHHHH
Confidence 344444444445555555555555 33356677777773333221 112111222233 799999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhcCCccccccchhHHHHHHHHHHHHHhhc
Q psy5300 122 MFSLYLSTFILVLIGIDRFLAVRYPMKSISTSSRCCKFVIGAWILSALCSL 172 (177)
Q Consensus 122 ~~~~~~s~~~l~~isidRy~ai~~p~~~~~t~~~~~~~i~~~W~~s~~~~~ 172 (177)
+++..+..+=+..++++-|..++.-+ ....+++........|...++...
T Consensus 394 hff~LaaF~Wm~leg~hl~~~~v~vf-~~~~~~~~l~~~~~gwg~Pavvv~ 443 (610)
T KOG4193|consen 394 HFFFLAAFFWMLLEGFHLYLLLVEVF-RSRPRRRKLLYSLYGWGVPAVVVG 443 (610)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh-ccccchHHHHHHHHHhhhhHHHHh
Confidence 99999999999999999998555443 233344444443577877766543
No 35
>PF01534 Frizzled: Frizzled/Smoothened family membrane region; InterPro: IPR000539 The frizzled (fz) locus of Drosophila coordinates the cytoskeletons of epidermal cells, producing a parallel array of cuticular hairs and bristles [, ]. In fz mutants, the orientation of individual hairs with respect both to their neighbours and to the organism as a whole is altered. In the wild-type wing, all hairs point towards the distal tip []. In the developing wing, fz has 2 functions: it is required for the proximal-distal transmission of an intracellular polarity signal; and it is required for cells to respond to the polarity signal. Fz produces an mRNA that encodes an integral membrane protein with 7 putative transmembrane (TM) domains. This protein should contain both extracellular and cytoplasmic domains, which could function in the transmission and interpretation of polarity information []. This signature is usually found downstream of the Fz domain (IPR000024 from INTERPRO); GO: 0007166 cell surface receptor linked signaling pathway, 0016020 membrane
Probab=73.10 E-value=47 Score=26.65 Aligned_cols=132 Identities=17% Similarity=0.225 Sum_probs=76.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcccccccccccCCchHHHHHHHHHHHHHHHHHHHhhHHHHH--Hcc-c------
Q psy5300 35 SSRAIILAILAVLSFVGNVLTIISIRKNRVHRGLRQHSWNGVYTLILHLSVADLFVTVFCLAGEAVW--SYT-V------ 105 (177)
Q Consensus 35 ~~~~~~~~~~~~~gi~~N~~vi~~i~~~~~~~~~~~~~~~~~~~~l~~La~sDll~~l~~~~~~~~~--~~~-~------ 105 (177)
...-....+.+.+..+.+.+.+.....++++.+ ....-+.-+++.-.+.++..+...... ... +
T Consensus 9 ~~~~~wi~~~s~ic~~~t~ftv~Tf~id~~rf~-------yPerpi~fl~~Cy~~~s~~~l~~~~~g~~~i~C~~~~~~~ 81 (328)
T PF01534_consen 9 EFARIWIGVWSVICFISTLFTVLTFLIDRSRFR-------YPERPIIFLSFCYFIVSLGYLIRFILGRESIACRSQDGTE 81 (328)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcccccC-------CccchhhHHHHHHHHHHHHHHHHHhccCCCcCCCcCCCCc
Confidence 344445556666666667776666666655331 112223335555455444333222221 000 0
Q ss_pred ----ccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCccccccchhHHHHHHHHHHHHHhhcC
Q psy5300 106 ----EWLWGNMSCKLFKFLQMFSLYLSTFILVLIGIDRFLAVRYPMKSISTSSRCCKFVIGAWILSALCSLP 173 (177)
Q Consensus 106 ----~~~~~~~~C~~~~~~~~~~~~~s~~~l~~isidRy~ai~~p~~~~~t~~~~~~~i~~~W~~s~~~~~p 173 (177)
....++..|.+...+.+.+..++..=-+.+++.-|++....-.+-.-.++....=.++|.+.++..+.
T Consensus 82 ~~~~~~~~~~~~C~~~F~l~Yyf~mAa~~WWviLt~~W~lsa~~kw~~e~i~~~s~yfH~~aW~iP~~~ti~ 153 (328)
T PF01534_consen 82 RILVQDGLENSSCTVVFLLLYYFGMAASLWWVILTLTWFLSAGLKWGSEAIEKKSSYFHLVAWGIPAVLTIA 153 (328)
T ss_pred eeEeecCCCCCchhhHHHHHHHHHhHHHHHHHHHHHHHHHHhhcccCcchhhhhcchhhhHHhhhhHHHHHH
Confidence 11234579999999888888888877888899999887765432233345555567788887776543
No 36
>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.
Probab=73.01 E-value=8.1 Score=26.24 Aligned_cols=30 Identities=20% Similarity=0.251 Sum_probs=12.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcccccc
Q psy5300 35 SSRAIILAILAVLSFVGNVLTIISIRKNRVHR 66 (177)
Q Consensus 35 ~~~~~~~~~~~~~gi~~N~~vi~~i~~~~~~~ 66 (177)
+...++-++.+++|++ +++.+.++|++|+.
T Consensus 66 i~~Ii~gv~aGvIg~I--lli~y~irR~~Kk~ 95 (122)
T PF01102_consen 66 IIGIIFGVMAGVIGII--LLISYCIRRLRKKS 95 (122)
T ss_dssp HHHHHHHHHHHHHHHH--HHHHHHHHHHS---
T ss_pred eeehhHHHHHHHHHHH--HHHHHHHHHHhccC
Confidence 3333344445555544 24455555555443
No 37
>PF10323 7TM_GPCR_Srv: Serpentine type 7TM GPCR chemoreceptor Srv; InterPro: IPR019426 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class v (Srv) from the Srg superfamily [, ]. Srg receptors contain seven hydrophobic, putative transmembrane, regions and can be distinguished from other 7TM GPCR receptors by their own characteristic TM signatures.
Probab=72.05 E-value=44 Score=25.92 Aligned_cols=101 Identities=12% Similarity=0.074 Sum_probs=49.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcccccc--cccccCCchHHHHHHHHHHHHHHHHHHHhhHHHHHH---cccccccc
Q psy5300 36 SRAIILAILAVLSFVGNVLTIISIRKNRVHR--GLRQHSWNGVYTLILHLSVADLFVTVFCLAGEAVWS---YTVEWLWG 110 (177)
Q Consensus 36 ~~~~~~~~~~~~gi~~N~~vi~~i~~~~~~~--~~~~~~~~~~~~~l~~La~sDll~~l~~~~~~~~~~---~~~~~~~~ 110 (177)
....+..+.++..++.++.++..++|++|.+ ..+.++++.....+.... -.+..+....+..... ...+-...
T Consensus 167 ~~~~~~~~~cv~~iv~Y~~i~~~iRk~~k~~s~~~s~~~~rE~~L~~~~~i--~~~a~~~~~~~~~~~~~~~~~~~~~~~ 244 (283)
T PF10323_consen 167 IAFIFVSVTCVICIVCYGIIFIFIRKRNKKKSKSSSRSRRREIRLAIQVFI--LFCAFFVILVYYIFSNYFAQNFNTDPI 244 (283)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHhhhhhhhHhHHHHHHHHH--HHHHHHHHHHHHHHHHHHHhcccchHH
Confidence 3455667888888999999999888653222 111122233333332211 1111111111111111 11111111
Q ss_pred cchhhHHHHHHHHHHHHHHHHHHHHHHH
Q psy5300 111 NMSCKLFKFLQMFSLYLSTFILVLIGID 138 (177)
Q Consensus 111 ~~~C~~~~~~~~~~~~~s~~~l~~isid 138 (177)
...-.+........+..+.+.+...+-|
T Consensus 245 ~~~r~~y~~~~~~~s~inP~~LLi~n~~ 272 (283)
T PF10323_consen 245 FYLRAFYPILNGLLSFINPWMLLIFNKD 272 (283)
T ss_pred HHHHHHHHHHHHHHHhhhhHHhhhccHH
Confidence 2233455566777778888888777643
No 38
>PF03125 Sre: C. elegans Sre G protein-coupled chemoreceptor; InterPro: IPR004151 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class e (Sre) from the Sra superfamily []. ; GO: 0004888 transmembrane signaling receptor activity, 0007606 sensory perception of chemical stimulus, 0016021 integral to membrane
Probab=61.98 E-value=84 Score=25.39 Aligned_cols=109 Identities=16% Similarity=0.121 Sum_probs=61.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccccccCCchHHHHHHHHHH---HHHHHHHHHhhHHHHHHccc----
Q psy5300 33 SASSRAIILAILAVLSFVGNVLTIISIRKNRVHRGLRQHSWNGVYTLILHLSV---ADLFVTVFCLAGEAVWSYTV---- 105 (177)
Q Consensus 33 ~~~~~~~~~~~~~~~gi~~N~~vi~~i~~~~~~~~~~~~~~~~~~~~l~~La~---sDll~~l~~~~~~~~~~~~~---- 105 (177)
......++-.+..+++..-......++.+-|..| ...+++....-. -+++.-+...|.........
T Consensus 25 ~~~~~~i~e~~l~~~~~~~~~~~~~i~~~~r~FH-------~N~~~l~~~~~~~w~e~~i~k~~i~~y~~~~~~~~~~~~ 97 (365)
T PF03125_consen 25 FYIILLIFELILYIICFYFTFKSCYIILKIRQFH-------RNLNILFIFILLQWFELIIGKILIIPYQIGIITLGDISI 97 (365)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhceeeecCccc
Confidence 3344555556666666666666777788888888 566665555443 33333334444333222111
Q ss_pred -----cccc------------ccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCc
Q psy5300 106 -----EWLW------------GNMSCKLFKFLQMFSLYLSTFILVLIGIDRFLAVRYPMK 148 (177)
Q Consensus 106 -----~~~~------------~~~~C~~~~~~~~~~~~~s~~~l~~isidRy~ai~~p~~ 148 (177)
-|+. +...--+.+++..-........+.++++||..|....-.
T Consensus 98 ~~~~~~~t~~~~~m~~v~~~~~~~~l~~~~~l~~~y~~~~~~~~~~~~iER~~AT~~i~d 157 (365)
T PF03125_consen 98 GTYIQWWTDDPSEMIPVNSFNDSWPLFIGGFLRWHYMFSAIFCLLAIVIERCFATYFIKD 157 (365)
T ss_pred hhhhhhhccCcccceeeeccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0111 111222233444445566689999999999999988664
No 39
>PF02076 STE3: Pheromone A receptor; InterPro: IPR001499 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). Little is known about the structure and function of the mating factor receptors, STE2 and STE3. It is believed, however, that they are integral membrane proteins that may be involved in the response to mating factors on the cell membrane [, , ]. The amino acid sequences of both receptors contain high proportions of hydrophobic residues grouped into 7 domains, in a manner reminiscent of the rhodopsins and other receptors believed to interact with G-proteins. However, while a similar 3D framework has been proposed to account for this, there is no significant sequence similarity either between STE2 and STE3, or between these and the rhodopsin-type family: the receptors thus bear their own unique '7TM' signatures. The STE3 gene of Saccharomyces cerevisiae (Baker's yeast) is the cell-surface receptor that binds the 13-residue lipopeptide a-factor. Several related fungal pheromone receptor sequences are known: these include pheromone B alpha 1 and B alpha 3, and pheromone B beta 1 receptors from Schizophyllum commune; pheromone receptor 1 from Ustilago hordei; and pheromone receptors 1 and 2 from Ustilago maydis. Members of the family share about 20% sequence identity.; GO: 0004932 mating-type factor pheromone receptor activity, 0007186 G-protein coupled receptor protein signaling pathway, 0016021 integral to membrane
Probab=39.66 E-value=1.8e+02 Score=22.72 Aligned_cols=83 Identities=20% Similarity=0.253 Sum_probs=51.8
Q ss_pred HHHHHHHHHHHHhhcccccccccccCCchHHHHHHHHHHHHHHHHHHHhhHHHHHHcccccccccchhhHHHHHHHHHHH
Q psy5300 47 LSFVGNVLTIISIRKNRVHRGLRQHSWNGVYTLILHLSVADLFVTVFCLAGEAVWSYTVEWLWGNMSCKLFKFLQMFSLY 126 (177)
Q Consensus 47 ~gi~~N~~vi~~i~~~~~~~~~~~~~~~~~~~~l~~La~sDll~~l~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~ 126 (177)
++.++..+.+.-..-+-|-|+ .+.-.++.-+.++++...+-.+ .+.-.. ...-+..|++..-+......
T Consensus 3 ~s~i~~~l~i~Pl~wH~ra~N------~~~~~li~Wl~l~nl~~~INai----IW~~n~-~~~~~~wCDI~~kl~~~~~~ 71 (283)
T PF02076_consen 3 FSFIAFVLLIVPLPWHWRARN------IGTCSLIFWLFLSNLIYFINAI----IWRDND-INWWPVWCDISTKLIIGSSV 71 (283)
T ss_pred HHHHHHHHHHHHHHHHHHcCc------HHHHHHHHHHHHHHHHHHHhhh----hcCCCC-CccCceeeeehHHHHHHHHH
Confidence 345555555555554444443 6677788899999988755322 221111 11222799999988888888
Q ss_pred HHHHHHHHHHHHHH
Q psy5300 127 LSTFILVLIGIDRF 140 (177)
Q Consensus 127 ~s~~~l~~isidRy 140 (177)
.-.....+|+..=|
T Consensus 72 g~~~a~lcI~r~L~ 85 (283)
T PF02076_consen 72 GIPAASLCIMRRLY 85 (283)
T ss_pred HHHHHHHHHHHHHH
Confidence 87777777775444
No 40
>TIGR01477 RIFIN variant surface antigen, rifin family. This model represents the rifin branch of the rifin/stevor family (pfam02009) of predicted variant surface antigens as found in Plasmodium falciparum. This model is based on a set of rifin sequences kindly provided by Matt Berriman from the Sanger Center. This is a global model and assesses a penalty for incomplete sequence. Additional fragmentary sequences may be found with the fragment model and a cutoff of 20 bits.
Probab=38.12 E-value=46 Score=26.93 Aligned_cols=30 Identities=30% Similarity=0.366 Sum_probs=24.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcccccc
Q psy5300 37 RAIILAILAVLSFVGNVLTIISIRKNRVHR 66 (177)
Q Consensus 37 ~~~~~~~~~~~gi~~N~~vi~~i~~~~~~~ 66 (177)
..+..++++++-++.-.++||.+.|.||.+
T Consensus 310 t~IiaSiIAIvvIVLIMvIIYLILRYRRKK 339 (353)
T TIGR01477 310 TPIIASIIAILIIVLIMVIIYLILRYRRKK 339 (353)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence 355678889999999999999999888775
No 41
>PTZ00046 rifin; Provisional
Probab=34.78 E-value=56 Score=26.53 Aligned_cols=29 Identities=31% Similarity=0.377 Sum_probs=24.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcccccc
Q psy5300 38 AIILAILAVLSFVGNVLTIISIRKNRVHR 66 (177)
Q Consensus 38 ~~~~~~~~~~gi~~N~~vi~~i~~~~~~~ 66 (177)
.+..++++++-++.-.++||.+.|.||.+
T Consensus 316 aIiaSiiAIvVIVLIMvIIYLILRYRRKK 344 (358)
T PTZ00046 316 AIIASIVAIVVIVLIMVIIYLILRYRRKK 344 (358)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence 45678888889999999999999888775
No 42
>PF10328 7TM_GPCR_Srx: Serpentine type 7TM GPCR chemoreceptor Srx; InterPro: IPR019430 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class x (Srx) from the Srg superfamily [, ]. Srg receptors contain seven hydrophobic, putative transmembrane, regions and can be distinguished from other 7TM GPCR receptors by their own characteristic TM signatures.
Probab=34.46 E-value=2.1e+02 Score=21.81 Aligned_cols=56 Identities=21% Similarity=0.264 Sum_probs=32.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcccccc-----cccccCCchHHHHHHHHHHHHHHHHH
Q psy5300 36 SRAIILAILAVLSFVGNVLTIISIRKNRVHR-----GLRQHSWNGVYTLILHLSVADLFVTV 92 (177)
Q Consensus 36 ~~~~~~~~~~~~gi~~N~~vi~~i~~~~~~~-----~~~~~~~~~~~~~l~~La~sDll~~l 92 (177)
........+.++....|.+.++.+++.++.. +.+.++++..+++.+.. +=|++..+
T Consensus 161 ~~~~~~~~~~~~~~~lni~t~ikl~~~~~~~~~~~~~s~~r~rke~~f~~Qs~-~Q~~~~~i 221 (274)
T PF10328_consen 161 FDFYKNFILVIISNILNIITFIKLRKFRKKISVSSSESKKRRRKEIRFFIQSF-IQDLLYLI 221 (274)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccchhhHHHHHHHHHHHHHHH-HHHHHHHH
Confidence 3445566778888889998888887655443 11223335555554443 34555444
No 43
>KOG4564|consensus
Probab=34.43 E-value=2.9e+02 Score=23.51 Aligned_cols=95 Identities=16% Similarity=0.150 Sum_probs=62.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcccccccccccCCchHHHHHHHHHHHHHHHHHHHhhHHHHHHcccc------------
Q psy5300 39 IILAILAVLSFVGNVLTIISIRKNRVHRGLRQHSWNGVYTLILHLSVADLFVTVFCLAGEAVWSYTVE------------ 106 (177)
Q Consensus 39 ~~~~~~~~~gi~~N~~vi~~i~~~~~~~~~~~~~~~~~~~~l~~La~sDll~~l~~~~~~~~~~~~~~------------ 106 (177)
++|.+-..++++.=++.+.++..-|++| -.+|+.-.||-+|=++-++..+...........
T Consensus 149 ~lytvGyslSl~sL~vAl~If~~FR~L~-------CtRn~IH~nLF~SfiLra~~~~i~~~~l~~~~~~~~~~~~~~~~~ 221 (473)
T KOG4564|consen 149 ILYTVGYSLSLVSLLVALIIFLYFRSLH-------CTRNYIHMNLFASFILRAASVLIKDLVLVVNGEQDASSDTSLHCL 221 (473)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhc-------chHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccccccccccc
Confidence 4566666666666667777777778898 889999999999999887765544433331111
Q ss_pred cccccchhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5300 107 WLWGNMSCKLFKFLQMFSLYLSTFILVLIGIDRF 140 (177)
Q Consensus 107 ~~~~~~~C~~~~~~~~~~~~~s~~~l~~isidRy 140 (177)
...+...|+....+...+..+..+=+.+=.+.=|
T Consensus 222 ~~~~~~~Ck~~~~~~~Yf~~aNf~WmlvEGlYLh 255 (473)
T KOG4564|consen 222 ISSNPVGCKLLFVFFQYFVLANFFWMLVEGLYLH 255 (473)
T ss_pred ccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1245678998887666666665555554444433
No 44
>PF11446 DUF2897: Protein of unknown function (DUF2897); InterPro: IPR021550 This is a bacterial family of uncharacterised proteins.
Probab=33.65 E-value=62 Score=18.61 Aligned_cols=24 Identities=13% Similarity=0.311 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhc
Q psy5300 38 AIILAILAVLSFVGNVLTIISIRK 61 (177)
Q Consensus 38 ~~~~~~~~~~gi~~N~~vi~~i~~ 61 (177)
..+.+++.+.-++||+.++--..+
T Consensus 5 ~wlIIviVlgvIigNia~LK~sAk 28 (55)
T PF11446_consen 5 PWLIIVIVLGVIIGNIAALKYSAK 28 (55)
T ss_pred hhHHHHHHHHHHHhHHHHHHHhcc
Confidence 344556666678899888765544
No 45
>COG1230 CzcD Co/Zn/Cd efflux system component [Inorganic ion transport and metabolism]
Probab=32.04 E-value=2.6e+02 Score=22.17 Aligned_cols=68 Identities=16% Similarity=0.296 Sum_probs=41.4
Q ss_pred HHHHHHHHHHHHHHHHHHhhcccccccccccCCchHHHHHHHHH-HHHHHHHHHHhhHHHHHHcccccccccchhhHHH
Q psy5300 41 LAILAVLSFVGNVLTIISIRKNRVHRGLRQHSWNGVYTLILHLS-VADLFVTVFCLAGEAVWSYTVEWLWGNMSCKLFK 118 (177)
Q Consensus 41 ~~~~~~~gi~~N~~vi~~i~~~~~~~~~~~~~~~~~~~~l~~La-~sDll~~l~~~~~~~~~~~~~~~~~~~~~C~~~~ 118 (177)
...++++|++.|.+..+.+.+... +..|.=-..|. ++|.+..+..+.-.+...+. +|..-+....+..
T Consensus 127 ml~va~~GL~vN~~~a~ll~~~~~---------~~lN~r~a~LHvl~D~Lgsv~vIia~i~i~~~-~w~~~Dpi~si~i 195 (296)
T COG1230 127 MLVVAIIGLVVNLVSALLLHKGHE---------ENLNMRGAYLHVLGDALGSVGVIIAAIVIRFT-GWSWLDPILSIVI 195 (296)
T ss_pred hHHHHHHHHHHHHHHHHHhhCCCc---------ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCCccchHHHHHH
Confidence 467889999999999999887711 12222222244 48999887665544444443 5555444444433
No 46
>PF06679 DUF1180: Protein of unknown function (DUF1180); InterPro: IPR009565 This entry consists of several hypothetical eukaryotic proteins thought to be membrane proteins. Their function is unknown.
Probab=31.53 E-value=1.3e+02 Score=21.60 Aligned_cols=29 Identities=10% Similarity=0.161 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhccc
Q psy5300 35 SSRAIILAILAVLSFVGNVLTIISIRKNR 63 (177)
Q Consensus 35 ~~~~~~~~~~~~~gi~~N~~vi~~i~~~~ 63 (177)
.....+|+++++.+++.=.+++-+++.+|
T Consensus 93 ~l~R~~~Vl~g~s~l~i~yfvir~~R~r~ 121 (163)
T PF06679_consen 93 MLKRALYVLVGLSALAILYFVIRTFRLRR 121 (163)
T ss_pred chhhhHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 45677788888888887777777665554
No 47
>PF09882 DUF2109: Predicted membrane protein (DUF2109); InterPro: IPR019214 This entry is found in various hypothetical archaeal proteins and has no known function.
Probab=31.07 E-value=1.3e+02 Score=18.57 Aligned_cols=48 Identities=13% Similarity=0.196 Sum_probs=31.9
Q ss_pred HHHHHHHHHHHHHHhhcccccccccccCCchHHHHHHHHHHHHHHHHHHHhhHHH
Q psy5300 45 AVLSFVGNVLTIISIRKNRVHRGLRQHSWNGVYTLILHLSVADLFVTVFCLAGEA 99 (177)
Q Consensus 45 ~~~gi~~N~~vi~~i~~~~~~~~~~~~~~~~~~~~l~~La~sDll~~l~~~~~~~ 99 (177)
.++|+++=...+-.+..+.+.+ +-.|+=..|-|++.++....--|+..
T Consensus 4 ~i~g~Iai~~~iR~~~~~~r~~-------KL~yLnv~~F~iaalIaL~i~~P~g~ 51 (78)
T PF09882_consen 4 IIIGIIAILMAIRIFLTKSRAR-------KLLYLNVINFAIAALIALYIKSPMGA 51 (78)
T ss_pred HHHHHHHHHHHHHHHHhHhHHH-------hhhHHHHHHHHHHHHHHHHhCCcHHH
Confidence 4556666666676666666666 77777777888888877655555433
No 48
>KOG1056|consensus
Probab=28.83 E-value=73 Score=29.18 Aligned_cols=51 Identities=16% Similarity=0.271 Sum_probs=40.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcccccccccccCCchHHHHHHHHHH
Q psy5300 35 SSRAIILAILAVLSFVGNVLTIISIRKNRVHRGLRQHSWNGVYTLILHLSV 85 (177)
Q Consensus 35 ~~~~~~~~~~~~~gi~~N~~vi~~i~~~~~~~~~~~~~~~~~~~~l~~La~ 85 (177)
....+..++++++|++.-..++.++.++.+..-+|...+.-.|+++.++.+
T Consensus 559 ~~~~i~~l~lA~LGii~tl~vlv~fvr~~~TpvVkasgreLsyiLL~gi~l 609 (878)
T KOG1056|consen 559 SPWSIAPLLLAILGIIATLFVLVLFVRYNDTPVVKASGRELSYILLLGIFL 609 (878)
T ss_pred ccccHHHHHHHHHHHHHHHHhheeEEEecCCceEEecCcEehHHHHHHHHH
Confidence 345577889999999999999999999988876666666777887776654
No 49
>KOG1482|consensus
Probab=28.77 E-value=2.7e+02 Score=22.90 Aligned_cols=82 Identities=12% Similarity=0.137 Sum_probs=50.3
Q ss_pred HHHHHHHHHHHHHHHhhcccccccccc-cCCch---------HHHH-HHHHHHHHHHHHHHHhhHHHHHHcccccccccc
Q psy5300 44 LAVLSFVGNVLTIISIRKNRVHRGLRQ-HSWNG---------VYTL-ILHLSVADLFVTVFCLAGEAVWSYTVEWLWGNM 112 (177)
Q Consensus 44 ~~~~gi~~N~~vi~~i~~~~~~~~~~~-~~~~~---------~~~~-l~~La~sDll~~l~~~~~~~~~~~~~~~~~~~~ 112 (177)
...+|++-|..+.++....-+-+++.+ +.+.+ .|+= -.--.+.|+..++-.........+.+.|..-+.
T Consensus 182 ~a~~gv~vNiim~~vL~~~~h~h~H~~~~s~g~~h~~~~~~n~nvraAyiHVlGDliQSvGV~iaa~Ii~f~P~~~i~Dp 261 (379)
T KOG1482|consen 182 TAAVGVAVNIIMGFVLHQSGHGHSHGGSHSHGHSHDHGEELNLNVRAAFVHVLGDLIQSVGVLIAALIIYFKPEYKIADP 261 (379)
T ss_pred EeehhhhhhhhhhhhhcccCCCCCCCCCCCcCcccccccccchHHHHHHHHHHHHHHHHHHHHhhheeEEecccceecCc
Confidence 456788999998888876643333222 01111 1110 112457899988866666666678889998888
Q ss_pred hhhHHHHHHHHHH
Q psy5300 113 SCKLFKFLQMFSL 125 (177)
Q Consensus 113 ~C~~~~~~~~~~~ 125 (177)
.|.+.........
T Consensus 262 ICT~~FSiivl~T 274 (379)
T KOG1482|consen 262 ICTFVFSIIVLGT 274 (379)
T ss_pred hhhhhHHHHHHHh
Confidence 9987655444433
No 50
>KOG3609|consensus
Probab=26.10 E-value=5.2e+02 Score=23.74 Aligned_cols=77 Identities=18% Similarity=0.322 Sum_probs=49.0
Q ss_pred HHHhhHHHHHHcccccccccchhhHH-HHHHHHHHHHHHHHHHHHH-HHHHhhhhcC-CccccccchhHHHHHHHHHHHH
Q psy5300 92 VFCLAGEAVWSYTVEWLWGNMSCKLF-KFLQMFSLYLSTFILVLIG-IDRFLAVRYP-MKSISTSSRCCKFVIGAWILSA 168 (177)
Q Consensus 92 l~~~~~~~~~~~~~~~~~~~~~C~~~-~~~~~~~~~~s~~~l~~is-idRy~ai~~p-~~~~~t~~~~~~~i~~~W~~s~ 168 (177)
+.+.++.......+.-..|..+|+-+ -|+.+..++.....++.+. .+++. .+ .+.+-......=.+...|+.++
T Consensus 321 ~~~P~~~l~yllap~S~~G~~~r~PfmKFi~H~~Sy~~FL~LL~l~s~~~~~---~~~~~~~g~~p~~vE~li~~wV~G~ 397 (822)
T KOG3609|consen 321 LCFPMPSLVYLLAPMSRKGTTMRKPFMKFIAHITSYLVFLILLILASLIGFY---FAWTDSRGVTPQALEILIYLWVMGL 397 (822)
T ss_pred HHhHHHHHHHHhCCCCcccchhhchHHHHHHHHHHHHHHHHHHHHHHHhhhh---hhhhcccCCCCcHHHHHHHHHHHHH
Confidence 33445566667777778888888765 4777777777776666665 34443 22 2233444445556788899888
Q ss_pred Hhh
Q psy5300 169 LCS 171 (177)
Q Consensus 169 ~~~ 171 (177)
++.
T Consensus 398 iw~ 400 (822)
T KOG3609|consen 398 IWE 400 (822)
T ss_pred HHH
Confidence 753
No 51
>PF02009 Rifin_STEVOR: Rifin/stevor family; InterPro: IPR002858 Malaria is still a major cause of mortality in many areas of the world. Plasmodium falciparum causes the most severe human form of the disease and is responsible for most fatalities. Severe cases of malaria can occur when the parasite invades and then proliferates within red blood cell erythrocytes. The parasite produces many variant antigenic proteins, encoded by multigene families, which are present on the surface of the infected erythrocyte and play important roles in virulence. A crucial survival mechanism for the malaria parasite is its ability to evade the immune response by switching these variant surface antigens. The high virulence of P. falciparum relative to other malarial parasites is in large part due to the fact that in this organism many of these surface antigens mediate the binding of infected erythrocytes to the vascular endothelium (cytoadherence) and non-infected erythrocytes (rosetting). This can lead to the accumulation of infected cells in the vasculature of a variety of organs, blocking the blood flow and reducing the oxygen supply. Clinical symptoms of severe infection can include fever, progressive anaemia, multi-organ dysfunction and coma. For more information see []. Several multicopy gene families have been described in Plasmodium falciparum, including the stevor family of subtelomeric open reading frames and the rif interspersed repetitive elements. Both families contain three predicted transmembrane segments. It has been proposed that stevor and rif are members of a larger superfamily that code for variant surface antigens [].
Probab=25.64 E-value=78 Score=25.08 Aligned_cols=30 Identities=33% Similarity=0.389 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcccccc
Q psy5300 37 RAIILAILAVLSFVGNVLTIISIRKNRVHR 66 (177)
Q Consensus 37 ~~~~~~~~~~~gi~~N~~vi~~i~~~~~~~ 66 (177)
..+..++++++-++.=.++|+.++|.||.+
T Consensus 256 t~I~aSiiaIliIVLIMvIIYLILRYRRKK 285 (299)
T PF02009_consen 256 TAIIASIIAILIIVLIMVIIYLILRYRRKK 285 (299)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344667777777777788888888887754
No 52
>PF10192 GpcrRhopsn4: Rhodopsin-like GPCR transmembrane domain; InterPro: IPR019336 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). This region of 270 amino acids is the seven transmembrane alpha-helical domains included within five GPCRRHODOPSN4 motifs of a G-protein-coupled-receptor (GPCR) protein, conserved from nematodes to humans [].
Probab=23.13 E-value=3.4e+02 Score=20.64 Aligned_cols=94 Identities=12% Similarity=0.023 Sum_probs=39.4
Q ss_pred HHHHHHHHHHHHHHHHHhhcccccccccccCCchHHHHHHHHHHHHHHHHHHHhhHHHHHHcccccccccchhhHHHHHH
Q psy5300 42 AILAVLSFVGNVLTIISIRKNRVHRGLRQHSWNGVYTLILHLSVADLFVTVFCLAGEAVWSYTVEWLWGNMSCKLFKFLQ 121 (177)
Q Consensus 42 ~~~~~~gi~~N~~vi~~i~~~~~~~~~~~~~~~~~~~~l~~La~sDll~~l~~~~~~~~~~~~~~~~~~~~~C~~~~~~~ 121 (177)
.+...+..+.+........+++..| .....+..++.+-=+...+... ....+..+ ..|....+..+-+.
T Consensus 36 ~~~y~vl~~~~~~~~~~l~~~~~~h-------~~~~l~~~~l~l~~~s~~l~~i--h~~~ya~n--G~G~~~l~~~g~i~ 104 (257)
T PF10192_consen 36 LLLYIVLSIISIYSIQSLKKRGLMH-------PVYKLFSAALLLQFLSLLLNLI--HYIVYAYN--GVGIPFLKVLGQIF 104 (257)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCC-------HHHHHHHHHHHHHHHHHHHHHH--HHHHHHcc--CCCchhHHHHHHHH
Confidence 3334444444444444444444444 5666666666554333322211 11222222 23333445555444
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhcCC
Q psy5300 122 MFSLYLSTFILVLIGIDRFLAVRYPM 147 (177)
Q Consensus 122 ~~~~~~s~~~l~~isidRy~ai~~p~ 147 (177)
....... +.+..+.+-+=+.+.++.
T Consensus 105 ~~~s~~~-~~lLLllla~GwTi~~~~ 129 (257)
T PF10192_consen 105 DILSQIL-FLLLLLLLAKGWTITRSR 129 (257)
T ss_pred HHHHHHH-HHHHHHHHHcccccccCc
Confidence 4433333 333333443445555544
No 53
>PF02118 Srg: Srg family chemoreceptor; InterPro: IPR000609 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class g (Srg) from the Srg superfamily [, ]. Srg receptors contain seven hydrophobic, putative transmembrane, regions and can be distinguished from other 7TM GPCR receptors by their own characteristic TM signatures. ; GO: 0004888 transmembrane signaling receptor activity, 0007606 sensory perception of chemical stimulus, 0016020 membrane
Probab=22.63 E-value=3.4e+02 Score=20.42 Aligned_cols=29 Identities=21% Similarity=0.361 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhccc
Q psy5300 35 SSRAIILAILAVLSFVGNVLTIISIRKNR 63 (177)
Q Consensus 35 ~~~~~~~~~~~~~gi~~N~~vi~~i~~~~ 63 (177)
....+.+.+..++|+..|......+.+.+
T Consensus 171 ~~~~~~~i~~~ii~i~~~~~~~~~l~~~~ 199 (275)
T PF02118_consen 171 IFSLIYFIIIIIITIITNIITYRRLRKLS 199 (275)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 44566677788888888887776666544
No 54
>PF02116 STE2: Fungal pheromone mating factor STE2 GPCR; InterPro: IPR000366 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). Little is known about the structure and function of the mating factor receptors, STE2 and STE3. It is believed, however, that they are integral membrane proteins that may be involved in the response to mating factors on the cell membrane [, , ]. The amino acid sequences of both receptors contain high proportions of hydrophobic residues grouped into 7 domains, in a manner reminiscent of the rhodopsins and other receptors believed to interact with G-proteins. However, while a similar 3D framework has been proposed to account for this, there is no significant sequence similarity either between STE2 and STE3, or between these and the rhodopsin-type family: the receptors thus bear their own unique '7TM' signatures.; GO: 0004932 mating-type factor pheromone receptor activity, 0016020 membrane; PDB: 2K9P_A.
Probab=21.57 E-value=3.4e+02 Score=21.33 Aligned_cols=31 Identities=10% Similarity=0.116 Sum_probs=12.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcccccc
Q psy5300 35 SSRAIILAILAVLSFVGNVLTIISIRKNRVHR 66 (177)
Q Consensus 35 ~~~~~~~~~~~~~gi~~N~~vi~~i~~~~~~~ 66 (177)
.-..+.|..-...+++. .++++.+.+++|+|
T Consensus 33 ~~~~I~yg~qiGA~~~l-livL~llt~~~Krk 63 (284)
T PF02116_consen 33 VRTAINYGVQIGACLLL-LIVLWLLTKSEKRK 63 (284)
T ss_dssp HHHHHHHHHHHHHHHHH-HHHHHHHT--S---
T ss_pred HHHHHHHHHHHHHHHHH-HHHHHHhcCccccc
Confidence 44455566555555333 23344444444444
No 55
>PF15330 SIT: SHP2-interacting transmembrane adaptor protein, SIT
Probab=20.43 E-value=2.1e+02 Score=18.84 Aligned_cols=30 Identities=23% Similarity=0.251 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcccccc
Q psy5300 37 RAIILAILAVLSFVGNVLTIISIRKNRVHR 66 (177)
Q Consensus 37 ~~~~~~~~~~~gi~~N~~vi~~i~~~~~~~ 66 (177)
+..++.+..++.+++|++......|++|..
T Consensus 3 Ll~il~llLll~l~asl~~wr~~~rq~k~~ 32 (107)
T PF15330_consen 3 LLGILALLLLLSLAASLLAWRMKQRQKKAG 32 (107)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhcccc
Confidence 345667777888888988777666665554
Done!