RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy5300
(177 letters)
>2ks9_A Substance-P receptor; water, autodock, NK1, neuropeptide
receptor-NEU complex; NMR {Homo sapiens} PDB: 2ksa_A
2ksb_A
Length = 364
Score = 96.7 bits (241), Expect = 2e-24
Identities = 27/138 (19%), Positives = 62/138 (44%), Gaps = 7/138 (5%)
Query: 38 AIILAILAVLSFVGNVLTIISIRKNRVHRGLRQHSWNGVYTLILHLSVADLFVTVFCLAG 97
A ++ V S VGNV+ + I ++ +++L+ A+ + F
Sbjct: 36 AAAYTVIVVTSVVGNVVVMWIILAHK-------RMRTVTNYFLVNLAFAEASMAAFNTVV 88
Query: 98 EAVWSYTVEWLWGNMSCKLFKFLQMFSLYLSTFILVLIGIDRFLAVRYPMKSISTSSRCC 157
++ EW +G CK F + +++ S + + + DR++A+ +P++ +++
Sbjct: 89 NFTYAVHNEWYYGLFYCKFHNFFPIAAVFASIYSMTAVAFDRYMAIIHPLQPRLSATATK 148
Query: 158 KFVIGAWILSALCSLPQI 175
+ W+L+ L + PQ
Sbjct: 149 VVICVIWVLALLLAFPQG 166
>1u19_A Rhodopsin; G protein-coupled receptor, membrane protein, retinal
protei photoreceptor, signaling protein; HET: MAN NAG
BMA RET PLM HTO HTG; 2.20A {Bos taurus} SCOP: f.13.1.2
PDB: 1hzx_A* 1gzm_A* 1l9h_A* 2g87_A* 2hpy_A* 2i35_A*
2i36_A* 2i37_A* 2ped_A* 3oax_A* 3c9l_A* 1jfp_A* 1ln6_A*
1f88_A* 3cap_A* 3dqb_A* 3pqr_A* 3pxo_A* 3c9m_A* 2x72_A*
...
Length = 349
Score = 87.4 bits (217), Expect = 4e-21
Identities = 33/139 (23%), Positives = 62/139 (44%), Gaps = 8/139 (5%)
Query: 38 AIILAILAVLSFVGNVLTIISIRKNRVHRGLRQHSWNGVYTLILHLSVADLFVTVFCLAG 97
A + +L +L F N LT+ + H+ LR N ++L+L+VADLF+
Sbjct: 42 AAYMFLLIMLGFPINFLTLYVTVQ---HKKLRTPL-N---YILLNLAVADLFMVFGGFTT 94
Query: 98 EAVWSYTVEWLWGNMSCKLFKFLQMFSLYLSTFILVLIGIDRFLAVRYPMKSISTSSRCC 157
S +++G C L F ++ + LV++ I+R++ V PM +
Sbjct: 95 TLYTSLHGYFVFGPTGCNLEGFFATLGGEIALWSLVVLAIERYVVVCKPMSNFRFGENHA 154
Query: 158 KFVI-GAWILSALCSLPQI 175
+ W+++ C+ P +
Sbjct: 155 IMGVAFTWVMALACAAPPL 173
>4ea3_A Fusion protein of nociceptin receptor and cytochr; PSI-biology GPCR
network, structural genomics, GPCR membrane 7TM NOP ORL1
cytochrome B562; HET: 0NN OLB OLA OLC; 3.01A {Homo
sapiens}
Length = 434
Score = 84.9 bits (210), Expect = 6e-20
Identities = 31/139 (22%), Positives = 67/139 (48%), Gaps = 10/139 (7%)
Query: 39 IILAILAVLSFVGNVLTIISIRKNRVHRGLRQHSWNGVYTLILHLSVADLFVTVFCLAGE 98
+ + V +GN L + I ++ + + +Y I +L++AD V + L +
Sbjct: 130 GLYLAVCVGGLLGNCLVMYVILRHT-----KMKTATNIY--IFNLALADTLV-LLTLPFQ 181
Query: 99 AVWSYTVEWLWGNMSCKLFKFLQMFSLYLSTFILVLIGIDRFLAVRYPMKSIST-SSRCC 157
W +GN CK + ++++ STF L + +DR++A+ +P++++ +S
Sbjct: 182 GTDILLGFWPFGNALCKTVIAIDYYNMFTSTFTLTAMSVDRYVAICHPIRALDVRTSSKA 241
Query: 158 KFVIGA-WILSALCSLPQI 175
+ V A W L+++ +P
Sbjct: 242 QAVNVAIWALASVVGVPVA 260
>3sn6_R Lysozyme, beta-2 adrenergic receptor; seven transmembrane receptor,
nanobody, G protein-coupled RE GPCR, signal
transduction, G protein signaling; HET: P0G; 3.20A
{Enterobacteria phage T4} PDB: 3kj6_A 2r4s_A 2r4r_A
Length = 514
Score = 78.8 bits (194), Expect = 1e-17
Identities = 35/138 (25%), Positives = 64/138 (46%), Gaps = 9/138 (6%)
Query: 38 AIILAILAVLSFVGNVLTIISIRKNRVHRGLRQHSWNGVYTLILHLSVADLFVTVFCLAG 97
I+++++ + GNVL I +I K L+ + I L+ ADL + + +
Sbjct: 186 GIVMSLIVLAIVFGNVLVITAIAK---FERLQTVT----NYFITSLACADLVMGLAVVPF 238
Query: 98 EAVWSYTVEWLWGNMSCKLFKFLQMFSLYLSTFILVLIGIDRFLAVRYPMK--SISTSSR 155
A T W +GN C+ + + + + S L +I +DR+ A+ P K S+ T ++
Sbjct: 239 GAAHILTKTWTFGNFWCEFWTSIDVLCVTASIETLCVIAVDRYFAITSPFKYQSLLTKNK 298
Query: 156 CCKFVIGAWILSALCSLP 173
++ WI+S L S
Sbjct: 299 ARVIILMVWIVSGLTSFL 316
>4dkl_A MU-type opioid receptor, lysozyme chimera; G-protein coupled
receptor, 7 transmembrane receptor, signal
protein-antagonist complex; HET: BF0 CLR MPG 1PE; 2.80A
{Mus musculus} PDB: 4ej4_A* 4djh_A*
Length = 464
Score = 78.1 bits (192), Expect = 1e-17
Identities = 38/159 (23%), Positives = 73/159 (45%), Gaps = 10/159 (6%)
Query: 19 SREPCLQHAPQLTSSASSRAIILAILAVLSFVGNVLTIISIRKNRVHRGLRQHSWNGVYT 78
S C Q +A + + +I+ V+ GN L + I + + + +Y
Sbjct: 2 SHSLCPQTGSPSMVTAITIMALYSIVCVVGLFGNFLVMYVIVRYT-----KMKTATNIY- 55
Query: 79 LILHLSVADLFVTVFCLAGEAVWSYTVEWLWGNMSCKLFKFLQMFSLYLSTFILVLIGID 138
I +L++AD L ++V W +GN+ CK+ + ++++ S F L + +D
Sbjct: 56 -IFNLALADALA-TSTLPFQSVNYLMGTWPFGNILCKIVISIDYYNMFTSIFTLCTMSVD 113
Query: 139 RFLAVRYPMKSIS--TSSRCCKFVIGAWILSALCSLPQI 175
R++AV +P+K++ T + WILS+ LP +
Sbjct: 114 RYIAVCHPVKALDFRTPRNAKIVNVCNWILSSAIGLPVM 152
>3uon_A Human M2 muscarinic acetylcholine, receptor T4 LY fusion protein; G
protein-coupled receptor, GPCR, SI protein-antagonist
complex; HET: QNB BGC; 3.00A {Homo sapiens} PDB: 4daj_A*
Length = 467
Score = 77.8 bits (191), Expect = 2e-17
Identities = 34/140 (24%), Positives = 65/140 (46%), Gaps = 9/140 (6%)
Query: 38 AIILAILAVLSFVGNVLTIISIRKNRVHRGLRQHSWNGVYTLILHLSVADLFVTVFCLAG 97
++ L++++ +GN+L ++SI +V+R L+ + + L+ ADL + VF +
Sbjct: 27 VLVAGSLSLVTIIGNILVMVSI---KVNRHLQTVN----NYFLFSLACADLIIGVFSMNL 79
Query: 98 EAVWSYTVEWLWGNMSCKLFKFLQMFSLYLSTFILVLIGIDRFLAVRYPMK--SISTSSR 155
+++ W G + C L+ L S L++I DR+ V P+ T+
Sbjct: 80 YTLYTVIGYWPLGPVVCDLWLALDYVVSNASVMNLLIISFDRYFCVTKPLTYPVKRTTKM 139
Query: 156 CCKFVIGAWILSALCSLPQI 175
+ AW+LS + P I
Sbjct: 140 AGMMIAAAWVLSFILWAPAI 159
>3rze_A Histamine H1 receptor, lysozyme chimera; structural genomics,
PSI-biology, membrane protein, GPCR NET GPCR, hydrolase;
HET: 5EH D7V OLC; 3.10A {Homo sapiens}
Length = 452
Score = 76.3 bits (187), Expect = 6e-17
Identities = 34/141 (24%), Positives = 66/141 (46%), Gaps = 9/141 (6%)
Query: 38 AIILAILAVLSFVGNVLTIISIRKNRVHRGLRQHSWNGVYTLILHLSVADLFVTVFCLAG 97
++L+ + +++ N+L + ++ R R L I+ LSVADL V +
Sbjct: 12 VVVLSTICLVTVGLNLLVLYAV---RSERKLHTVG----NLYIVSLSVADLIVGAVVMPM 64
Query: 98 EAVWSYTVEWLWGNMSCKLFKFLQMFSLYLSTFILVLIGIDRFLAVRYPMK--SISTSSR 155
++ +W G C + + + S F + ++ IDR+ +V+ P++ T +R
Sbjct: 65 NILYLLMSKWSLGRPLCLFWLSMDYVASTASIFSVFILCIDRYRSVQQPLRYLKYRTKTR 124
Query: 156 CCKFVIGAWILSALCSLPQIG 176
++GAW LS L +P +G
Sbjct: 125 ASATILGAWFLSFLWVIPILG 145
>3eml_A Human adenosine A2A receptor/T4 lysozyme chimera; caffeine, GPCR,
membrane protein, LCP, mesophase, structural genomics,
PSI-2; HET: ZMA STE; 2.60A {Homo sapiens} PDB: 3qak_A*
Length = 488
Score = 75.9 bits (186), Expect = 9e-17
Identities = 31/138 (22%), Positives = 57/138 (41%), Gaps = 11/138 (7%)
Query: 38 AIILAILAVLSFVGNVLTIISIRKNRVHRGLRQHSWNGVYTLILHLSVADLFVTVFCLAG 97
+ +AVL+ +GNVL ++ N L+ + ++ L+ AD+ V V +
Sbjct: 25 ITVELAIAVLAILGNVLVCWAVWLNS---NLQNVT----NYFVVSLAAADIAVGVLAIPF 77
Query: 98 EAVWSYTVEWLWGNMSCKLFKFLQMFSLYLSTFILVLIGIDRFLAVRYPMK--SISTSSR 155
+ + C + S F L+ I IDR++A+R P++ + T +R
Sbjct: 78 AIT--ISTGFCAACHGCLFIACFVLVLTQSSIFSLLAIAIDRYIAIRIPLRYNGLVTGTR 135
Query: 156 CCKFVIGAWILSALCSLP 173
+ W+LS L
Sbjct: 136 AKGIIAICWVLSFAIGLT 153
>3odu_A C-X-C chemokine receptor type 4, lysozyme chimera; structural
genomics, PSI-2, protein structure initiative; HET: ITD
OLC OLA; 2.50A {Homo sapiens} PDB: 3oe8_A* 3oe6_A*
3oe0_A* 3oe9_A* 2k03_B* 2k04_B 2k05_B*
Length = 502
Score = 75.7 bits (186), Expect = 1e-16
Identities = 48/177 (27%), Positives = 74/177 (41%), Gaps = 12/177 (6%)
Query: 1 MNCSELIYIANLSLFDNISREPCLQHAPQLTSSASSRAIILAILAVLSFVGNVLTIISIR 60
+ S+ S + +EPC + + I +I+ + VGN L I+ +
Sbjct: 16 IYTSDNYTEEMGSGDYDSMKEPCFREENANFNKIFL-PTIYSIIFLTGIVGNGLVILVMG 74
Query: 61 KNRVHRGLRQHSWNGVYTLILHLSVADLFVTVFCLAGEAVWSYTVEWLWGNMSCKLFKFL 120
+ + S Y LHLSVADL V L AV W +GN CK +
Sbjct: 75 YQK-----KLRSMTDKY--RLHLSVADLLF-VITLPFWAV-DAVANWYFGNFLCKAVHVI 125
Query: 121 QMFSLYLSTFILVLIGIDRFLAVRYPMKSISTSSRCCKFVI--GAWILSALCSLPQI 175
+LY S +IL I +DR+LA+ + S + V+ G WI + L ++P
Sbjct: 126 YTVNLYSSVWILAFISLDRYLAIVHATNSQRPRKLLAEKVVYVGVWIPALLLTIPDF 182
>3v2y_A Sphingosine 1-phosphate receptor 1, lysozyme CHIM; EDG receptor,
lipid receptor, multiple sclerosi autoimmunity,
structural genomics, PSI-biology; HET: ML5 NAG; 2.80A
{Homo sapiens} PDB: 3v2w_A*
Length = 520
Score = 75.3 bits (184), Expect = 1e-16
Identities = 29/174 (16%), Positives = 65/174 (37%), Gaps = 17/174 (9%)
Query: 1 MNCSELIYIANLSLFDNISREPCLQHAPQLTSSASSRAIILAILAVLSFVGNVLTIISIR 60
+N ++ N + NIS + +++ ++ + N+ +++I
Sbjct: 38 VNYDIIVRHYNYTGKLNISADKENSIKLT--------SVVFILICCFIILENIFVLLTIW 89
Query: 61 KNRVHRGLRQHSWNGVYTLILHLSVADLFVTVFCLAGEAVWSYTVEWLWGNMSCKLFKFL 120
K + + H Y I +L+++DL V A + S + L +
Sbjct: 90 KTK-----KFHRPM--YYFIGNLALSDLLAGVAYTA-NLLLSGATTYKLTPAQWFLREGS 141
Query: 121 QMFSLYLSTFILVLIGIDRFLAVRYPM-KSISTSSRCCKFVIGAWILSALCSLP 173
+L S F L+ I I+R++ + + S + R + W++S +
Sbjct: 142 MFVALSASVFSLLAIAIERYITMLKMKLHNGSNNFRLFLLISACWVISLILGGL 195
>4eiy_A Adenosine receptor A2A/soluble cytochrome B562 CH; novel protein
engineering, GPCR network, PSI-biology, struct genomics,
membrane protein, GPCR; HET: ZMA CLR OLA OLC OLB; 1.80A
{Homo sapiens} PDB: 3vg9_A* 3vga_A* 2ydv_A* 2ydo_A*
3uza_A* 3rey_A* 3rfm_A* 3pwh_A* 3uzc_A* 4er9_A
Length = 447
Score = 75.1 bits (184), Expect = 1e-16
Identities = 31/140 (22%), Positives = 58/140 (41%), Gaps = 11/140 (7%)
Query: 38 AIILAILAVLSFVGNVLTIISIRKNRVHRGLRQHSWNGVYTLILHLSVADLFVTVFCLAG 97
+ +AVL+ +GNVL ++ N L+ + ++ L+ AD+ V V +
Sbjct: 35 ITVELAIAVLAILGNVLVCWAVWLNS---NLQNVT----NYFVVSLAAADIAVGVLAIPF 87
Query: 98 EAVWSYTVEWLWGNMSCKLFKFLQMFSLYLSTFILVLIGIDRFLAVRYPMK--SISTSSR 155
+ + C + S F L+ I IDR++A+R P++ + T +R
Sbjct: 88 AIT--ISTGFCAACHGCLFIACFVLVLTQSSIFSLLAIAIDRYIAIRIPLRYNGLVTGTR 145
Query: 156 CCKFVIGAWILSALCSLPQI 175
+ W+LS L +
Sbjct: 146 AKGIIAICWVLSFAIGLTPM 165
>2z73_A Rhodopsin; visual pigment, GQ-type, G-protein coupled receptor,
chromophore, glycoprotein, lipoprotein, membrane,
palmitate phosphorylation; HET: BOG RET PLM TWT PC1;
2.50A {Todarodes pacificus} PDB: 3aym_A* 3ayn_A* 2ziy_A*
Length = 448
Score = 75.0 bits (184), Expect = 2e-16
Identities = 29/141 (20%), Positives = 62/141 (43%), Gaps = 10/141 (7%)
Query: 38 AIILAILAVLSFVGNVLTIISIRKNRVHRGLRQHSWNGVYTLILHLSVADLFVTVFCLAG 97
I + I ++ GN + I K + L+ + N I++L+ +D ++
Sbjct: 38 GIFIGICGIIGCGGNGIVIYLFTK---TKSLQTPA-N---MFIINLAFSDFTFSLVNGFP 90
Query: 98 EAVW-SYTVEWLWGNMSCKLFKFLQMFSLYLSTFILVLIGIDRFLAVRYPMKSIS--TSS 154
+ +W++G +CK++ F+ ++S + +I IDR+ + PM + +
Sbjct: 91 LMTISCFLKKWIFGFAACKVYGFIGGIFGFMSIMTMAMISIDRYNVIGRPMAASKKMSHR 150
Query: 155 RCCKFVIGAWILSALCSLPQI 175
R +I W+ S L ++ I
Sbjct: 151 RAFIMIIFVWLWSVLWAIGPI 171
>2rh1_A Beta-2-adrenergic receptor/T4-lysozyme chimera; GPCR, 7TM, fusion,
lipidic cubic phase, lipidic, mesophase, cholesterol,
membrane protein; HET: MAL CAU CLR PLM 12P; 2.40A {Homo
sapiens} PDB: 3p0g_A* 3d4s_A* 3ny8_A* 3ny9_A* 3nya_A*
3pds_A*
Length = 500
Score = 74.7 bits (183), Expect = 2e-16
Identities = 34/138 (24%), Positives = 63/138 (45%), Gaps = 9/138 (6%)
Query: 38 AIILAILAVLSFVGNVLTIISIRKNRVHRGLRQHSWNGVYTLILHLSVADLFVTVFCLAG 97
I+++++ + GNVL I +I K L+ + I L+ ADL + + +
Sbjct: 44 GIVMSLIVLAIVFGNVLVITAIAK---FERLQTVT----NYFITSLACADLVMGLAVVPF 96
Query: 98 EAVWSYTVEWLWGNMSCKLFKFLQMFSLYLSTFILVLIGIDRFLAVRYPMK--SISTSSR 155
A W +GN C+ + + + + S L +I +DR+ A+ P K S+ T ++
Sbjct: 97 GAAHILMKMWTFGNFWCEFWTSIDVLCVTASIETLCVIAVDRYFAITSPFKYQSLLTKNK 156
Query: 156 CCKFVIGAWILSALCSLP 173
++ WI+S L S
Sbjct: 157 ARVIILMVWIVSGLTSFL 174
>4amj_A Beta-1 adrenergic receptor; membrane protein, 7TMR
BETA1-adrenoceptor, stabilising mutat biased agonist;
HET: CVD 2CV; 2.30A {Meleagris gallopavo} PDB: 2y01_A*
2y02_A* 2y03_A* 2y04_A* 4ami_A* 2y00_A* 2vt4_A* 2ycw_A*
2ycx_A* 2ycy_A* 2ycz_A*
Length = 315
Score = 72.8 bits (179), Expect = 6e-16
Identities = 41/140 (29%), Positives = 68/140 (48%), Gaps = 9/140 (6%)
Query: 38 AIILAILAVLSFVGNVLTIISIRKNRVHRGLRQHSWNGVYTLILHLSVADLFVTVFCLAG 97
++++A++ +L GNVL I +I + L+ + I L+ ADL V + +
Sbjct: 15 SLLMALVVLLIVAGNVLVIAAIGS---TQRLQTLT----NLFITSLACADLVVGLLVVPF 67
Query: 98 EAVWSYTVEWLWGNMSCKLFKFLQMFSLYLSTFILVLIGIDRFLAVRYPMK--SISTSSR 155
A WLWG+ C+L+ L + + S L +I IDR+LA+ P + S+ T +R
Sbjct: 68 GATLVVRGTWLWGSFLCELWTSLDVLCVTASIETLCVIAIDRYLAITSPFRYQSLMTRAR 127
Query: 156 CCKFVIGAWILSALCSLPQI 175
+ W +SAL S I
Sbjct: 128 AKVIICTVWAISALVSFLPI 147
>3pbl_A D(3) dopamine receptor, lysozyme chimera; structural genomics,
PSI-2, protein structure initiative, AC technologies
center for gene to 3D structure; HET: ETQ MAL; 2.89A
{Homo sapiens}
Length = 481
Score = 71.3 bits (174), Expect = 3e-15
Identities = 38/173 (21%), Positives = 65/173 (37%), Gaps = 13/173 (7%)
Query: 9 IANLSLFDNISREPCLQHAPQLTSSASSRAIILAILAVLSFVGNVLTIISIRKNRVHRGL 68
++ LS N + + A+ L + GN L +++ K R L
Sbjct: 13 LSQLSSHLNYTCGAENSTGASQARPHAYYALSYCALILAIVFGNGLVCMAVLK---ERAL 69
Query: 69 RQHSWNGVYTLILHLSVADLFVTVFCLAGEAVWSYT-VEWLWGNMSCKLFKFLQMFSLYL 127
+ + L++ L+VADL V + T W + + C +F L +
Sbjct: 70 QTTT----NYLVVSLAVADLLVATLVMPWVVYLEVTGGVWNFSRICCDVFVTLDVMMCTA 125
Query: 128 STFILVLIGIDRFLAVRYPMK-----SISTSSRCCKFVIGAWILSALCSLPQI 175
S + L I IDR+ AV P+ S+ R + W+L+ S P +
Sbjct: 126 SIWNLCAISIDRYTAVVMPVHYQHGTGQSSCRRVALMITAVWVLAFAVSCPLL 178
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 29.1 bits (64), Expect = 0.88
Identities = 22/120 (18%), Positives = 32/120 (26%), Gaps = 31/120 (25%)
Query: 58 SIRKNRVHRG-----LRQHSWNGVYTLILHLSVADLFVTVF--------CLAGEAVWSYT 104
K V R LRQ +L L A V + +A + SY
Sbjct: 125 VFAKYNVSRLQPYLKLRQA--------LLELRPAK-NVLIDGVLGSGKTWVALDVCLSYK 175
Query: 105 VE--------WL-WGNMSCKLFKFLQMFSLYLSTFILVLIGIDRFLAVRYPMKSISTSSR 155
V+ WL N + + L D ++ + SI R
Sbjct: 176 VQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELR 235
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna;
HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 28.0 bits (61), Expect = 1.0
Identities = 7/26 (26%), Positives = 10/26 (38%), Gaps = 7/26 (26%)
Query: 10 ANLSLFDNISREPCLQHAPQLTSSAS 35
A+L L+ AP L A+
Sbjct: 27 ASLKLY-----AD--DSAPALAIKAT 45
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 28.9 bits (64), Expect = 1.1
Identities = 18/86 (20%), Positives = 31/86 (36%), Gaps = 26/86 (30%)
Query: 110 GNMSCKLFKFLQ-MFSLYLSTFILVLIGIDRFLAVRYPMKSISTSSRCCKFV------IG 162
GN + F+ L+ ++ Y + LI +F A + + ++ + V I
Sbjct: 164 GN-TDDYFEELRDLYQTY-HVLVGDLI---KFSAET--LSELIRTTLDAEKVFTQGLNIL 216
Query: 163 AWI------------LSALCSLPQIG 176
W+ LS S P IG
Sbjct: 217 EWLENPSNTPDKDYLLSIPISCPLIG 242
Score = 27.3 bits (60), Expect = 3.4
Identities = 14/57 (24%), Positives = 21/57 (36%), Gaps = 19/57 (33%)
Query: 5 ELIYIANLSLFDNISREPCLQHAPQLTSSASSRAIILAILAVLSFVGNVLTIISIRK 61
L+ I N N+ + Q ++ RA L V NVL I ++K
Sbjct: 1839 WLVEIVN----YNVENQ-------QYVAAGDLRA--------LDTVTNVLNFIKLQK 1876
Score = 26.6 bits (58), Expect = 6.5
Identities = 12/57 (21%), Positives = 20/57 (35%), Gaps = 8/57 (14%)
Query: 13 SLFDNISREPCLQHAPQLTSSASSRAIILAILAVLSFVGNVLTIISIRKNRVHRGLR 69
+ D I R P T ++ + S +G LT +N+ G+R
Sbjct: 478 RIVDCIIRLPV--KWETTTQFKATHILDFGPGGA-SGLGV-LT----HRNKDGTGVR 526
>3qhq_A CSN2, SAG0897 family crispr-associated protein; helicase,
transferase; 2.00A {Streptococcus agalactiae}
Length = 229
Score = 26.8 bits (59), Expect = 4.1
Identities = 6/27 (22%), Positives = 13/27 (48%)
Query: 115 KLFKFLQMFSLYLSTFILVLIGIDRFL 141
K F+ +Q++ +LV + +L
Sbjct: 148 KCFEIIQVYHYLTKKNLLVFVNSGAYL 174
>3tut_A RNA 3'-terminal phosphate cyclase; cyclase family, cyclization of
RNA 3'-phosphate ENDS, transf; HET: ATP; 1.58A
{Escherichia coli} PDB: 3tux_A* 3tv1_A* 3tw3_A* 3kgd_A*
1qmh_A* 1qmi_A
Length = 358
Score = 26.2 bits (57), Expect = 6.2
Identities = 14/41 (34%), Positives = 16/41 (39%), Gaps = 1/41 (2%)
Query: 40 ILAILAVLSFV-GNVLTIISIRKNRVHRGLRQHSWNGVYTL 79
IL LS + G TI SIR R GL + V
Sbjct: 38 ILRSALSLSMITGQPFTITSIRAGRAKPGLLRQHLTAVKAA 78
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.330 0.139 0.440
Gapped
Lambda K H
0.267 0.0536 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,591,365
Number of extensions: 137887
Number of successful extensions: 262
Number of sequences better than 10.0: 1
Number of HSP's gapped: 224
Number of HSP's successfully gapped: 27
Length of query: 177
Length of database: 6,701,793
Length adjustment: 87
Effective length of query: 90
Effective length of database: 4,272,666
Effective search space: 384539940
Effective search space used: 384539940
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.9 bits)
S2: 54 (25.0 bits)