RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy5300
         (177 letters)



>d1u19a_ f.13.1.2 (A:) Rhodopsin {Cow (Bos taurus) [TaxId: 9913]}
          Length = 348

 Score = 44.6 bits (104), Expect = 2e-06
 Identities = 28/133 (21%), Positives = 55/133 (41%), Gaps = 7/133 (5%)

Query: 38  AIILAILAVLSFVGNVLTIISIRKNRVHRGLRQHSWNGVYTLILHLSVADLFVTVFCLAG 97
           A  + +L +L F  N LT+    +++            +  ++L+L+VADLF+       
Sbjct: 41  AAYMFLLIMLGFPINFLTLYVTVQHK-------KLRTPLNYILLNLAVADLFMVFGGFTT 93

Query: 98  EAVWSYTVEWLWGNMSCKLFKFLQMFSLYLSTFILVLIGIDRFLAVRYPMKSISTSSRCC 157
               S    +++G   C L  F       ++ + LV++ I+R++ V  PM +        
Sbjct: 94  TLYTSLHGYFVFGPTGCNLEGFFATLGGEIALWSLVVLAIERYVVVCKPMSNFRFGENHA 153

Query: 158 KFVIGAWILSALC 170
              +    + AL 
Sbjct: 154 IMGVAFTWVMALA 166


>d1qasa3 c.1.18.1 (A:299-625) Phospholipase C isozyme D1 (PLC-D1)
          {Rat (Rattus norvegicus) [TaxId: 10116]}
          Length = 327

 Score = 25.4 bits (55), Expect = 3.9
 Identities = 9/32 (28%), Positives = 15/32 (46%)

Query: 12 LSLFDNISREPCLQHAPQLTSSASSRAIILAI 43
          L  +D  ++EP + H    TS      ++ AI
Sbjct: 44 LDCWDGPNQEPIIYHGYTFTSKILFCDVLRAI 75


>d1qmha2 d.68.2.1 (A:5-184,A:280-338) RNA 3'-terminal phosphate
          cyclase, RPTC {Escherichia coli [TaxId: 562]}
          Length = 239

 Score = 25.2 bits (55), Expect = 4.9
 Identities = 15/34 (44%), Positives = 16/34 (47%), Gaps = 2/34 (5%)

Query: 40 ILAILAVLSFV-GNVLTIISIRKNRVHRGLR-QH 71
          IL     LS + G   TI SIR  R   GL  QH
Sbjct: 15 ILRSALSLSMITGQPFTITSIRAGRAKPGLLRQH 48


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.330    0.139    0.440 

Gapped
Lambda     K      H
   0.267   0.0567    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 633,459
Number of extensions: 25537
Number of successful extensions: 62
Number of sequences better than 10.0: 1
Number of HSP's gapped: 61
Number of HSP's successfully gapped: 7
Length of query: 177
Length of database: 2,407,596
Length adjustment: 80
Effective length of query: 97
Effective length of database: 1,309,196
Effective search space: 126992012
Effective search space used: 126992012
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.9 bits)
S2: 50 (23.4 bits)