Query psy5301
Match_columns 132
No_of_seqs 220 out of 1296
Neff 8.3
Searched_HMMs 46136
Date Fri Aug 16 23:04:07 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy5301.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/5301hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4219|consensus 98.3 9.7E-07 2.1E-11 69.5 5.9 78 54-131 154-239 (423)
2 PHA03234 DNA packaging protein 98.1 9.3E-06 2E-10 63.2 6.3 71 56-130 153-226 (338)
3 PHA02834 chemokine receptor-li 97.8 2.7E-05 5.9E-10 59.9 4.6 73 55-131 146-219 (323)
4 PHA03235 DNA packaging protein 97.8 3.1E-05 6.7E-10 61.8 4.7 75 54-130 152-233 (409)
5 PHA02638 CC chemokine receptor 97.8 3.4E-05 7.4E-10 61.7 4.5 75 54-130 216-302 (417)
6 PF00001 7tm_1: 7 transmembran 97.3 0.00044 9.5E-09 49.5 4.8 74 54-131 105-178 (257)
7 PHA03087 G protein-coupled che 97.0 0.004 8.7E-08 47.8 7.7 71 55-130 160-232 (335)
8 PHA03235 DNA packaging protein 95.8 0.026 5.7E-07 45.1 5.9 47 14-62 184-233 (409)
9 PHA03234 DNA packaging protein 95.7 0.029 6.2E-07 43.7 5.6 46 15-62 178-226 (338)
10 KOG4219|consensus 94.9 0.021 4.6E-07 45.5 2.7 52 11-64 181-240 (423)
11 PHA02638 CC chemokine receptor 93.8 0.18 4E-06 40.4 5.8 46 15-62 252-302 (417)
12 PHA02834 chemokine receptor-li 92.9 0.36 7.9E-06 37.1 6.1 30 33-62 189-218 (323)
13 PF00001 7tm_1: 7 transmembran 91.0 0.58 1.3E-05 33.1 4.9 47 15-64 133-179 (257)
14 KOG4220|consensus 90.8 0.13 2.8E-06 41.5 1.5 28 104-131 196-223 (503)
15 PHA03087 G protein-coupled che 81.9 5 0.00011 30.6 5.9 46 15-62 185-232 (335)
16 PF06796 NapE: Periplasmic nit 75.0 13 0.00029 21.4 4.8 34 32-65 17-52 (56)
17 PF05296 TAS2R: Mammalian tast 69.0 19 0.00041 27.6 6.0 32 100-131 179-210 (303)
18 TIGR02972 TMAO_torE trimethyla 66.6 20 0.00044 19.9 4.8 31 33-63 10-42 (47)
19 KOG2087|consensus 59.3 21 0.00047 28.4 4.6 67 56-130 154-221 (363)
20 TIGR02973 nitrate_rd_NapE peri 52.0 38 0.00082 18.4 4.5 30 34-63 6-37 (42)
21 PHA01815 hypothetical protein 37.8 73 0.0016 17.6 3.7 22 104-125 9-30 (55)
22 KOG4220|consensus 36.3 35 0.00075 28.1 2.6 42 17-63 182-223 (503)
23 PF05296 TAS2R: Mammalian tast 33.0 2.2E+02 0.0048 21.7 8.4 38 27-64 174-211 (303)
24 COG3086 RseC Positive regulato 29.3 96 0.0021 21.6 3.5 21 35-55 75-95 (150)
25 PF15179 Myc_target_1: Myc tar 28.4 1.2E+02 0.0027 21.9 4.1 34 35-68 22-55 (197)
26 PF12606 RELT: Tumour necrosis 27.7 1.2E+02 0.0026 17.0 3.3 22 111-132 6-27 (50)
27 cd00929 Cyt_c_Oxidase_VIIc Cyt 27.6 1.2E+02 0.0025 16.7 3.2 17 100-116 23-39 (46)
28 PF04246 RseC_MucC: Positive r 27.2 1.3E+02 0.0028 20.0 3.9 22 35-56 68-89 (135)
29 PF02935 COX7C: Cytochrome c o 24.9 1.6E+02 0.0034 17.3 4.1 18 100-117 41-58 (65)
30 PF15086 UPF0542: Uncharacteri 23.8 1.8E+02 0.0039 17.7 3.7 28 33-63 20-47 (74)
31 PF15468 DUF4636: Domain of un 22.7 1.6E+02 0.0034 22.0 3.8 29 34-62 37-65 (243)
32 PRK10862 SoxR reducing system 20.3 2.1E+02 0.0046 19.7 4.0 18 35-52 75-92 (154)
33 COG3924 Predicted membrane pro 20.3 1.7E+02 0.0037 17.9 3.0 22 35-56 44-65 (80)
No 1
>KOG4219|consensus
Probab=98.35 E-value=9.7e-07 Score=69.51 Aligned_cols=78 Identities=18% Similarity=0.191 Sum_probs=57.1
Q ss_pred HHHhhhhhccceeeeEEEEEeeecC--CccCceeeee-ccCC--CChhHH---HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5301 54 VSTFLTISRKCFMSFMVIFHIEKGP--FIEDFYQCVT-YGFY--TEPWQE---QLYSCFSLFFMFICPLLILVTTYVSTF 125 (132)
Q Consensus 54 ~~iiw~ls~~~s~P~l~~~~~~~~~--~~~~~~~C~~-~~~~--~~~~~~---~~~~~~~~~~~F~iPl~ii~~cY~~I~ 125 (132)
++++|.++...+.|+..+++..+.+ ++.....|.. +.+. +.+... +.|+...+++.|++|++||.++|++|+
T Consensus 154 IllIW~lA~l~a~P~~l~s~v~~~~~~d~~~~~~~~~~~pe~~~~~~~~~~~~~~y~~vl~~lqYflPliVl~~~Yt~ia 233 (423)
T KOG4219|consen 154 ILLIWALALLLALPQLLYSSVEELYLYDGESRVVCVTAWPEHVCPTENESLLMQGYNYVLLFLQYFLPLIVLGLAYTVIA 233 (423)
T ss_pred hHHHHHHHHHHhccceeeeeeEEeeccCCcceEEEEEecccccCCcchhhhhhcceeeeehhHHHHHHHHHHHHHHHHHH
Confidence 5679999999999999998877643 2333567742 2221 222211 237777788899999999999999999
Q ss_pred HHHhhc
Q psy5301 126 LTISRT 131 (132)
Q Consensus 126 ~~L~~~ 131 (132)
++||.+
T Consensus 234 v~LW~~ 239 (423)
T KOG4219|consen 234 VTLWGR 239 (423)
T ss_pred HHHHhc
Confidence 999974
No 2
>PHA03234 DNA packaging protein UL33; Provisional
Probab=98.09 E-value=9.3e-06 Score=63.15 Aligned_cols=71 Identities=15% Similarity=0.200 Sum_probs=45.2
Q ss_pred HhhhhhccceeeeEEEEEeeecCCccCceeeeeccCCCChhHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy5301 56 TFLTISRKCFMSFMVIFHIEKGPFIEDFYQCVTYGFYTEPWQEQLYS---CFSLFFMFICPLLILVTTYVSTFLTISR 130 (132)
Q Consensus 56 iiw~ls~~~s~P~l~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~~~~---~~~~~~~F~iPl~ii~~cY~~I~~~L~~ 130 (132)
+.|.++...++|.+...+..+.+ ++...| .+.++++.....+. ...++++|++|+.+|++||.+|.+++++
T Consensus 153 ~~Wi~s~l~~~P~l~~~~~~~~~--~~~~~C--~~~~~~~~~~~~~~~~~~~~~~~~f~iPl~im~~cY~~I~~~L~~ 226 (338)
T PHA03234 153 ILFLASAMCAIPAALFVKTEGKK--GNYGKC--NIHISSKKAYDLFIAIKIVFCFIWGIFPTMIFSFFYVIFCKALHA 226 (338)
T ss_pred HHHHHHHHHHhhHhHeeeeeecC--CCCCcC--cccCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 45888888899987654432221 223579 44554322112221 2234557899999999999999999875
No 3
>PHA02834 chemokine receptor-like protein; Provisional
Probab=97.82 E-value=2.7e-05 Score=59.92 Aligned_cols=73 Identities=21% Similarity=0.358 Sum_probs=45.9
Q ss_pred HHhhhhhccceeeeEEEEEeeecCCccCceeeeeccCCCC-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q psy5301 55 STFLTISRKCFMSFMVIFHIEKGPFIEDFYQCVTYGFYTE-PWQEQLYSCFSLFFMFICPLLILVTTYVSTFLTISRT 131 (132)
Q Consensus 55 ~iiw~ls~~~s~P~l~~~~~~~~~~~~~~~~C~~~~~~~~-~~~~~~~~~~~~~~~F~iPl~ii~~cY~~I~~~L~~~ 131 (132)
..+|.++...++|.+...+..+ .++...|. +...++ ..+...+....++++|++|+++|.+||.+|.++++++
T Consensus 146 ~~iWi~s~l~~~P~~~~~~~~~---~~~~~~C~-~~~~~~~~~~~~~~~~~~~i~~f~iPl~ii~~~Y~~I~~~l~~~ 219 (323)
T PHA02834 146 VAAWVCSVILSMPAMVLYYVDN---TDNLKQCI-FNDYHENFSWSAFFNFEINIFGIVIPLIILIYCYSKILYTLKNC 219 (323)
T ss_pred HHHHHHHHHHHhhHHHHHHhcc---CCCceEEe-ccCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3579998888888865432211 12335784 111111 1122233344457889999999999999999999763
No 4
>PHA03235 DNA packaging protein UL33; Provisional
Probab=97.80 E-value=3.1e-05 Score=61.80 Aligned_cols=75 Identities=15% Similarity=0.189 Sum_probs=48.1
Q ss_pred HHHhhhhhccceeeeEEEEEeee----cCCccCceeeeeccCCCChh---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5301 54 VSTFLTISRKCFMSFMVIFHIEK----GPFIEDFYQCVTYGFYTEPW---QEQLYSCFSLFFMFICPLLILVTTYVSTFL 126 (132)
Q Consensus 54 ~~iiw~ls~~~s~P~l~~~~~~~----~~~~~~~~~C~~~~~~~~~~---~~~~~~~~~~~~~F~iPl~ii~~cY~~I~~ 126 (132)
+.++|.++...++|.+++.+... .+.+.+...|. ..++++. ....|.+..+++.|++|+++|++||.+|.+
T Consensus 152 i~~iWi~sll~s~P~~~~~~~~~~~~~~~~~~~~~~C~--~~~~~~~~~~~~~~y~i~l~i~~f~iPl~im~~~Y~~I~~ 229 (409)
T PHA03235 152 LGLTWFASLICSGPAPVYTTVVAHDDVDPEAPGYETCV--IYFRADQVKTVLSTFKVLLTLVWGIAPVVMMTWFYTFFYR 229 (409)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhccccCcCCCCcceee--EeCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45689999889999754322111 11112345794 2333221 123455556677899999999999999999
Q ss_pred HHhh
Q psy5301 127 TISR 130 (132)
Q Consensus 127 ~L~~ 130 (132)
++++
T Consensus 230 ~l~~ 233 (409)
T PHA03235 230 TLKR 233 (409)
T ss_pred HHHh
Confidence 9975
No 5
>PHA02638 CC chemokine receptor-like protein; Provisional
Probab=97.76 E-value=3.4e-05 Score=61.65 Aligned_cols=75 Identities=13% Similarity=0.153 Sum_probs=48.1
Q ss_pred HHHhhhhhccceeeeEEEEEeeec-----CCc--cCceeeeeccCCCC-----hhHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5301 54 VSTFLTISRKCFMSFMVIFHIEKG-----PFI--EDFYQCVTYGFYTE-----PWQEQLYSCFSLFFMFICPLLILVTTY 121 (132)
Q Consensus 54 ~~iiw~ls~~~s~P~l~~~~~~~~-----~~~--~~~~~C~~~~~~~~-----~~~~~~~~~~~~~~~F~iPl~ii~~cY 121 (132)
+.++|.++...++|.++..+..+. +.+ .....|. ..++. ..+...+.+...+++|++|+++|.+||
T Consensus 216 ~~~iW~~s~l~slP~~~~~~~~~~~~~~~~~~~~~~~~~C~--~~~~~~~~~~~~~~~~~~~~~~i~~f~lPl~vmi~cY 293 (417)
T PHA02638 216 CIISWILSLIITSPAYFIFEASNIIFSAQDSNETISNYQCT--LIEDNEKNNISFLGRILQFEINILGMFIPIIIFAFCY 293 (417)
T ss_pred HhHHHHHHHHHHHHHHHHhhccccccccccCCCCccCCeee--eeccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356799999999998765443210 111 1235784 22221 122234445556788999999999999
Q ss_pred HHHHHHHhh
Q psy5301 122 VSTFLTISR 130 (132)
Q Consensus 122 ~~I~~~L~~ 130 (132)
.+|.++|++
T Consensus 294 ~~I~~~L~~ 302 (417)
T PHA02638 294 IKIILKLKQ 302 (417)
T ss_pred HHHHHHHHH
Confidence 999999976
No 6
>PF00001 7tm_1: 7 transmembrane receptor (rhodopsin family) Rhodopsin-like GPCR superfamily signature 5-hydroxytryptamine 7 receptor signature bradykinin receptor signature gastrin receptor signature melatonin receptor signature olfactory receptor signature; InterPro: IPR000276 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The rhodopsin-like GPCRs themselves represent a widespread protein family that includes hormone, neurotransmitter and light receptors, all of which transduce extracellular signals through interaction with guanine nucleotide-binding (G) proteins. Although their activating ligands vary widely in structure and character, the amino acid sequences of the receptors are very similar and are believed to adopt a common structural framework comprising 7 transmembrane (TM) helices [, , ].; GO: 0007186 G-protein coupled receptor protein signaling pathway, 0016021 integral to membrane; PDB: 2KI9_A 3QAK_A 2YDV_A 3VGA_A 3PWH_A 3RFM_A 3EML_A 3VG9_A 3REY_A 3UZA_A ....
Probab=97.31 E-value=0.00044 Score=49.50 Aligned_cols=74 Identities=16% Similarity=0.229 Sum_probs=50.7
Q ss_pred HHHhhhhhccceeeeEEEEEeeecCCccCceeeeeccCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q psy5301 54 VSTFLTISRKCFMSFMVIFHIEKGPFIEDFYQCVTYGFYTEPWQEQLYSCFSLFFMFICPLLILVTTYVSTFLTISRT 131 (132)
Q Consensus 54 ~~iiw~ls~~~s~P~l~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~~~~~~~~~~~F~iPl~ii~~cY~~I~~~L~~~ 131 (132)
+.++|.++...++|..+..+....++ ++...|. ...++.. ...+.....++++++|+.++.++|.+|.++++++
T Consensus 105 i~~~w~~~~~~~~~~~~~~~~~~~~~-~~~~~C~--~~~~~~~-~~~~~~~~~~~~~~~p~~~~~~~~~~i~~~~~~~ 178 (257)
T PF00001_consen 105 IILIWIISFLISLPPLFFSWVYFVSD-GSQSFCF--IDFSSSS-SQIYFIYFFIVFFILPLIIILICYIRILRKLRRQ 178 (257)
T ss_dssp HHHHHHHHHHHHHHHHHTCEEEEEST-CCCEEEE--ESCSSSH-HHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccccccccccccccccccccccccc-ccccccc--ccccccc-cccccccccccccccceeeeeeeccccccccccc
Confidence 45688888888888765433333222 2256793 3444333 3455666678889999999999999999988774
No 7
>PHA03087 G protein-coupled chemokine receptor-like protein; Provisional
Probab=97.00 E-value=0.004 Score=47.78 Aligned_cols=71 Identities=17% Similarity=0.255 Sum_probs=45.7
Q ss_pred HHhhhhhccceeeeEEEEEeeecCCccCceeeeeccCCCC-h-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy5301 55 STFLTISRKCFMSFMVIFHIEKGPFIEDFYQCVTYGFYTE-P-WQEQLYSCFSLFFMFICPLLILVTTYVSTFLTISR 130 (132)
Q Consensus 55 ~iiw~ls~~~s~P~l~~~~~~~~~~~~~~~~C~~~~~~~~-~-~~~~~~~~~~~~~~F~iPl~ii~~cY~~I~~~L~~ 130 (132)
.++|.++...++|.+...+...+ .+...|. ..+++ . .+.....+...++.|++|+.++.++|.+|.+++++
T Consensus 160 ~~iWl~~~~~~~p~~~~~~~~~~---~~~~~C~--~~~~~~~~~~~~~~~~~~~~~~~~lP~~ii~~~y~~i~~~l~~ 232 (335)
T PHA03087 160 LVIWIISIIETTPILFVYTTKKD---HETLICC--MFYNNKTMNWKLFINFEINIIGMLIPLTILLYCYSKILITLKG 232 (335)
T ss_pred HHHHHHHHHHhccHhheeeeecc---CCCceEE--ecCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 35688888888898776543322 2334673 23332 1 22223333345677999999999999999998875
No 8
>PHA03235 DNA packaging protein UL33; Provisional
Probab=95.81 E-value=0.026 Score=45.14 Aligned_cols=47 Identities=13% Similarity=0.288 Sum_probs=36.2
Q ss_pred CceeccccccccChhh---HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhc
Q psy5301 14 DFYQCVTYGFYTEPWQ---EQLYSCFSLFFMFICPLLILVTTYVSTFLTISR 62 (132)
Q Consensus 14 ~~~~Cv~~~~~~~~~~---~~~y~~~~~~~~y~~Pl~ii~~~y~~iiw~ls~ 62 (132)
+...| ...|+++.. ...|.+..++..|++|+++|++||..|...+.+
T Consensus 184 ~~~~C--~~~~~~~~~~~~~~~y~i~l~i~~f~iPl~im~~~Y~~I~~~l~~ 233 (409)
T PHA03235 184 GYETC--VIYFRADQVKTVLSTFKVLLTLVWGIAPVVMMTWFYTFFYRTLKR 233 (409)
T ss_pred Cccee--eEeCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 45689 666765432 235777778889999999999999999988864
No 9
>PHA03234 DNA packaging protein UL33; Provisional
Probab=95.70 E-value=0.029 Score=43.70 Aligned_cols=46 Identities=17% Similarity=0.194 Sum_probs=32.2
Q ss_pred ceeccccccccChhhHHHHH---HHHHHHHHHHHHHHHHHHHHHHhhhhhc
Q psy5301 15 FYQCVTYGFYTEPWQEQLYS---CFSLFFMFICPLLILVTTYVSTFLTISR 62 (132)
Q Consensus 15 ~~~Cv~~~~~~~~~~~~~y~---~~~~~~~y~~Pl~ii~~~y~~iiw~ls~ 62 (132)
.+.| .+.||++.....+. ...++.+|++|+++|++||..|..++.+
T Consensus 178 ~~~C--~~~~~~~~~~~~~~~~~~~~~~~~f~iPl~im~~cY~~I~~~L~~ 226 (338)
T PHA03234 178 YGKC--NIHISSKKAYDLFIAIKIVFCFIWGIFPTMIFSFFYVIFCKALHA 226 (338)
T ss_pred CCcC--cccCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3589 88887543222332 2234557899999999999999888854
No 10
>KOG4219|consensus
Probab=94.92 E-value=0.021 Score=45.48 Aligned_cols=52 Identities=23% Similarity=0.287 Sum_probs=42.0
Q ss_pred CCCCceeccccccccCh--------hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccc
Q psy5301 11 FIEDFYQCVTYGFYTEP--------WQEQLYSCFSLFFMFICPLLILVTTYVSTFLTISRKC 64 (132)
Q Consensus 11 ~~~~~~~Cv~~~~~~~~--------~~~~~y~~~~~~~~y~~Pl~ii~~~y~~iiw~ls~~~ 64 (132)
+++..++| .-.||++ .+.+.|.....+++|++|++++..+|+.|..+++...
T Consensus 181 d~~~~~~~--~~~~pe~~~~~~~~~~~~~~y~~vl~~lqYflPliVl~~~Yt~iav~LW~~~ 240 (423)
T KOG4219|consen 181 DGESRVVC--VTAWPEHVCPTENESLLMQGYNYVLLFLQYFLPLIVLGLAYTVIAVTLWGRR 240 (423)
T ss_pred CCcceEEE--EEecccccCCcchhhhhhcceeeeehhHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 34456799 7778865 2335599999999999999999999999999998764
No 11
>PHA02638 CC chemokine receptor-like protein; Provisional
Probab=93.77 E-value=0.18 Score=40.40 Aligned_cols=46 Identities=15% Similarity=0.276 Sum_probs=33.9
Q ss_pred ceeccccccccChh-----hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhc
Q psy5301 15 FYQCVTYGFYTEPW-----QEQLYSCFSLFFMFICPLLILVTTYVSTFLTISR 62 (132)
Q Consensus 15 ~~~Cv~~~~~~~~~-----~~~~y~~~~~~~~y~~Pl~ii~~~y~~iiw~ls~ 62 (132)
..+| ...+|.+. .+..+.+...+.+|++|+++|.+||..+.+++.+
T Consensus 252 ~~~C--~~~~~~~~~~~~~~~~~~~~~~~i~~f~lPl~vmi~cY~~I~~~L~~ 302 (417)
T PHA02638 252 NYQC--TLIEDNEKNNISFLGRILQFEINILGMFIPIIIFAFCYIKIILKLKQ 302 (417)
T ss_pred CCee--eeeccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3589 66666432 1234556667888999999999999999998854
No 12
>PHA02834 chemokine receptor-like protein; Provisional
Probab=92.91 E-value=0.36 Score=37.06 Aligned_cols=30 Identities=23% Similarity=0.457 Sum_probs=25.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhhc
Q psy5301 33 YSCFSLFFMFICPLLILVTTYVSTFLTISR 62 (132)
Q Consensus 33 y~~~~~~~~y~~Pl~ii~~~y~~iiw~ls~ 62 (132)
|....++..|++|+++|..||..+.+.+++
T Consensus 189 ~~~~~~i~~f~iPl~ii~~~Y~~I~~~l~~ 218 (323)
T PHA02834 189 FNFEINIFGIVIPLIILIYCYSKILYTLKN 218 (323)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 444556889999999999999999988864
No 13
>PF00001 7tm_1: 7 transmembrane receptor (rhodopsin family) Rhodopsin-like GPCR superfamily signature 5-hydroxytryptamine 7 receptor signature bradykinin receptor signature gastrin receptor signature melatonin receptor signature olfactory receptor signature; InterPro: IPR000276 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The rhodopsin-like GPCRs themselves represent a widespread protein family that includes hormone, neurotransmitter and light receptors, all of which transduce extracellular signals through interaction with guanine nucleotide-binding (G) proteins. Although their activating ligands vary widely in structure and character, the amino acid sequences of the receptors are very similar and are believed to adopt a common structural framework comprising 7 transmembrane (TM) helices [, , ].; GO: 0007186 G-protein coupled receptor protein signaling pathway, 0016021 integral to membrane; PDB: 2KI9_A 3QAK_A 2YDV_A 3VGA_A 3PWH_A 3RFM_A 3EML_A 3VG9_A 3REY_A 3UZA_A ....
Probab=91.00 E-value=0.58 Score=33.12 Aligned_cols=47 Identities=21% Similarity=0.490 Sum_probs=39.4
Q ss_pred ceeccccccccChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccc
Q psy5301 15 FYQCVTYGFYTEPWQEQLYSCFSLFFMFICPLLILVTTYVSTFLTISRKC 64 (132)
Q Consensus 15 ~~~Cv~~~~~~~~~~~~~y~~~~~~~~y~~Pl~ii~~~y~~iiw~ls~~~ 64 (132)
...| ...++++. ...+....++..+++|++++.++|..+.+.+.+..
T Consensus 133 ~~~C--~~~~~~~~-~~~~~~~~~~~~~~~p~~~~~~~~~~i~~~~~~~~ 179 (257)
T PF00001_consen 133 QSFC--FIDFSSSS-SQIYFIYFFIVFFILPLIIILICYIRILRKLRRQR 179 (257)
T ss_dssp CEEE--EESCSSSH-HHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccc--cccccccc-cccccccccccccccceeeeeeecccccccccccc
Confidence 4689 77776655 56788889999999999999999999999987664
No 14
>KOG4220|consensus
Probab=90.82 E-value=0.13 Score=41.49 Aligned_cols=28 Identities=14% Similarity=0.237 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q psy5301 104 FSLFFMFICPLLILVTTYVSTFLTISRT 131 (132)
Q Consensus 104 ~~~~~~F~iPl~ii~~cY~~I~~~L~~~ 131 (132)
-..+..|-+|..||++.|.+|.+.-++|
T Consensus 196 GTAiAAFYlPVtiM~~LY~rIyret~kR 223 (503)
T KOG4220|consen 196 GTAIAAFYLPVTIMTILYWRIYRETRKR 223 (503)
T ss_pred hHHHHHHHhhHHHHHHHHHHHHHHHHHH
Confidence 3446678999999999999999887664
No 15
>PHA03087 G protein-coupled chemokine receptor-like protein; Provisional
Probab=81.93 E-value=5 Score=30.60 Aligned_cols=46 Identities=20% Similarity=0.317 Sum_probs=32.0
Q ss_pred ceeccccccccChh-h-HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhc
Q psy5301 15 FYQCVTYGFYTEPW-Q-EQLYSCFSLFFMFICPLLILVTTYVSTFLTISR 62 (132)
Q Consensus 15 ~~~Cv~~~~~~~~~-~-~~~y~~~~~~~~y~~Pl~ii~~~y~~iiw~ls~ 62 (132)
...| ...|+++. . +..+.+...+..+++|++++.++|..+.+.+.+
T Consensus 185 ~~~C--~~~~~~~~~~~~~~~~~~~~~~~~~lP~~ii~~~y~~i~~~l~~ 232 (335)
T PHA03087 185 TLIC--CMFYNNKTMNWKLFINFEINIIGMLIPLTILLYCYSKILITLKG 232 (335)
T ss_pred CceE--EecCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3578 77776332 2 222334456778999999999999999887754
No 16
>PF06796 NapE: Periplasmic nitrate reductase protein NapE; InterPro: IPR010649 This family consists of several bacterial periplasmic nitrate reductase NapE proteins. Seven genes, napKEFDABC, encoding the periplasmic nitrate reductase system were cloned from the denitrifying phototrophic bacterium Rhodobacter sphaeroides. NapE is thought to be a transmembrane protein [].
Probab=75.04 E-value=13 Score=21.44 Aligned_cols=34 Identities=15% Similarity=0.123 Sum_probs=25.3
Q ss_pred HHHHHHHHHHHHHHHHHH--HHHHHHHhhhhhccce
Q psy5301 32 LYSCFSLFFMFICPLLIL--VTTYVSTFLTISRKCF 65 (132)
Q Consensus 32 ~y~~~~~~~~y~~Pl~ii--~~~y~~iiw~ls~~~s 65 (132)
-...+.|+...+.|++.+ +..|..++|.......
T Consensus 17 E~~~flfl~~~l~PiL~v~~Vg~YGF~VWm~Q~~~G 52 (56)
T PF06796_consen 17 ELKAFLFLAVVLFPILAVAFVGGYGFIVWMYQIFFG 52 (56)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 345678899999999744 4469999998866433
No 17
>PF05296 TAS2R: Mammalian taste receptor protein (TAS2R); InterPro: IPR007960 This family consists of several forms of mammalian taste receptor proteins (TAS2Rs). TAS2Rs are G protein-coupled receptors expressed in subsets of taste receptor cells of the tongue and palate epithelia and are organised in the genome in clusters. The proteins are genetically linked to loci that influence bitter perception in mice and humans [].; GO: 0004930 G-protein coupled receptor activity, 0007186 G-protein coupled receptor protein signaling pathway, 0050909 sensory perception of taste, 0016021 integral to membrane
Probab=68.99 E-value=19 Score=27.59 Aligned_cols=32 Identities=16% Similarity=0.296 Sum_probs=25.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q psy5301 100 LYSCFSLFFMFICPLLILVTTYVSTFLTISRT 131 (132)
Q Consensus 100 ~~~~~~~~~~F~iPl~ii~~cY~~I~~~L~~~ 131 (132)
.+......++..+|+.++..+-..+...|||+
T Consensus 179 ~~~~~~~~~~~~lPf~i~l~s~~lli~SL~rH 210 (303)
T PF05296_consen 179 FYFFILFNLGSFLPFLIFLVSSILLIFSLWRH 210 (303)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 33333445889999999999999999888875
No 18
>TIGR02972 TMAO_torE trimethylamine N-oxide reductase system, TorE protein. Members of this small, apparent transmembrane protein are designated TorE and occur in operons for the trimethylamine N-oxide (TMAO) reductase system. Members are closely related to the NapE protein of the related periplasmic nitrate reductase system. It may be that TorE is an integral membrane subunit of a complex with the reductase TorA.
Probab=66.63 E-value=20 Score=19.91 Aligned_cols=31 Identities=13% Similarity=0.293 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHHHHHHH--HHHHHHHhhhhhcc
Q psy5301 33 YSCFSLFFMFICPLLIL--VTTYVSTFLTISRK 63 (132)
Q Consensus 33 y~~~~~~~~y~~Pl~ii--~~~y~~iiw~ls~~ 63 (132)
...+.|+...+.|++.. +..|..++|.....
T Consensus 10 l~~flfl~v~l~PiLsV~~Vg~YGF~vWm~Q~~ 42 (47)
T TIGR02972 10 LKALGFIIVVLFPILSVAGIGGYGFIIWMIQAF 42 (47)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44668889999999744 44799999987654
No 19
>KOG2087|consensus
Probab=59.29 E-value=21 Score=28.36 Aligned_cols=67 Identities=9% Similarity=0.083 Sum_probs=37.1
Q ss_pred Hhhhhhccc-eeeeEEEEEeeecCCccCceeeeeccCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy5301 56 TFLTISRKC-FMSFMVIFHIEKGPFIEDFYQCVTYGFYTEPWQEQLYSCFSLFFMFICPLLILVTTYVSTFLTISR 130 (132)
Q Consensus 56 iiw~ls~~~-s~P~l~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~~~~~~~~~~~F~iPl~ii~~cY~~I~~~L~~ 130 (132)
..|..+... ..|.+ + .+.......|- +-..++...+.|.+..++..=.+=+++|.+||++|...+++
T Consensus 154 ~~wl~~~l~A~~Pl~---g---~s~Y~~~~vCl--PL~~~~~~s~g~y~~~~l~~N~lafiiia~~Y~~iy~~l~~ 221 (363)
T KOG2087|consen 154 LGWLFAFLMALLPLF---G---ISSYGASSVCL--PLHIEEPLSTGYYLVALLGLNLLAFIIIAFSYGKIYCSLRK 221 (363)
T ss_pred HHHHHHHHHHhcccc---C---CCCCcccceee--ecccCCccchhHHHHHHHHHHHHHHHHHHHHhhhhheeeec
Confidence 367666664 44532 1 11122346893 22222221221444444444578889999999999888776
No 20
>TIGR02973 nitrate_rd_NapE periplasmic nitrate reductase, NapE protein. NapE, homologous to TorE (TIGR02972), is a membrane protein of unknown function that is part of the periplasmic nitrate reductase system; it may be part of the enzyme complex. The periplasmic nitrate reductase allows for nitrate respiration in anaerobic conditions.
Probab=52.03 E-value=38 Score=18.36 Aligned_cols=30 Identities=20% Similarity=0.191 Sum_probs=22.7
Q ss_pred HHHHHHHHHHHHHHH--HHHHHHHHhhhhhcc
Q psy5301 34 SCFSLFFMFICPLLI--LVTTYVSTFLTISRK 63 (132)
Q Consensus 34 ~~~~~~~~y~~Pl~i--i~~~y~~iiw~ls~~ 63 (132)
..+.|+...+.|++. .+..|..++|.....
T Consensus 6 ~~flfl~~~l~PiLsV~~V~~YGF~vWm~Q~~ 37 (42)
T TIGR02973 6 NTFLFLAAVIWPVLSVITVGGYGFAVWMYQIL 37 (42)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 356788889999974 444799999987654
No 21
>PHA01815 hypothetical protein
Probab=37.83 E-value=73 Score=17.59 Aligned_cols=22 Identities=23% Similarity=0.449 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q psy5301 104 FSLFFMFICPLLILVTTYVSTF 125 (132)
Q Consensus 104 ~~~~~~F~iPl~ii~~cY~~I~ 125 (132)
..+.+.|++.+++....|.++.
T Consensus 9 ivfllaflitliilmt~~irvs 30 (55)
T PHA01815 9 IVFLLAFLITLIILMTLHIRVS 30 (55)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4567778888888888887753
No 22
>KOG4220|consensus
Probab=36.33 E-value=35 Score=28.07 Aligned_cols=42 Identities=14% Similarity=0.320 Sum_probs=32.0
Q ss_pred eccccccccChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcc
Q psy5301 17 QCVTYGFYTEPWQEQLYSCFSLFFMFICPLLILVTTYVSTFLTISRK 63 (132)
Q Consensus 17 ~Cv~~~~~~~~~~~~~y~~~~~~~~y~~Pl~ii~~~y~~iiw~ls~~ 63 (132)
+| +-.|=+ ..+.+.-+-++.|-+|..+|++.|..|.|+...+
T Consensus 182 eC--~iQFls---np~iTfGTAiAAFYlPVtiM~~LY~rIyret~kR 223 (503)
T KOG4220|consen 182 EC--YIQFLS---NPAITFGTAIAAFYLPVTIMTILYWRIYRETRKR 223 (503)
T ss_pred ce--EEEeec---CceeehhHHHHHHHhhHHHHHHHHHHHHHHHHHH
Confidence 67 555543 2346677788999999999999999999987543
No 23
>PF05296 TAS2R: Mammalian taste receptor protein (TAS2R); InterPro: IPR007960 This family consists of several forms of mammalian taste receptor proteins (TAS2Rs). TAS2Rs are G protein-coupled receptors expressed in subsets of taste receptor cells of the tongue and palate epithelia and are organised in the genome in clusters. The proteins are genetically linked to loci that influence bitter perception in mice and humans [].; GO: 0004930 G-protein coupled receptor activity, 0007186 G-protein coupled receptor protein signaling pathway, 0050909 sensory perception of taste, 0016021 integral to membrane
Probab=32.97 E-value=2.2e+02 Score=21.71 Aligned_cols=38 Identities=13% Similarity=0.211 Sum_probs=28.5
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccc
Q psy5301 27 PWQEQLYSCFSLFFMFICPLLILVTTYVSTFLTISRKC 64 (132)
Q Consensus 27 ~~~~~~y~~~~~~~~y~~Pl~ii~~~y~~iiw~ls~~~ 64 (132)
+..+..+....+..+..+|++++.++-..++.-+++..
T Consensus 174 ~~~~~~~~~~~~~~~~~lPf~i~l~s~~lli~SL~rH~ 211 (303)
T PF05296_consen 174 SKSSYFYFFILFNLGSFLPFLIFLVSSILLIFSLWRHM 211 (303)
T ss_pred chHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 33344455555669999999999999998888887654
No 24
>COG3086 RseC Positive regulator of sigma E activity [Signal transduction mechanisms]
Probab=29.27 E-value=96 Score=21.56 Aligned_cols=21 Identities=24% Similarity=0.311 Sum_probs=16.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q psy5301 35 CFSLFFMFICPLLILVTTYVS 55 (132)
Q Consensus 35 ~~~~~~~y~~Pl~ii~~~y~~ 55 (132)
+...+.+|++||+.+.+.+.+
T Consensus 75 L~sA~LvYi~PL~~l~v~~~L 95 (150)
T COG3086 75 LKSALLVYIFPLVGLFLGAIL 95 (150)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 556788999999988887543
No 25
>PF15179 Myc_target_1: Myc target protein 1
Probab=28.42 E-value=1.2e+02 Score=21.88 Aligned_cols=34 Identities=9% Similarity=0.036 Sum_probs=27.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhccceeee
Q psy5301 35 CFSLFFMFICPLLILVTTYVSTFLTISRKCFMSF 68 (132)
Q Consensus 35 ~~~~~~~y~~Pl~ii~~~y~~iiw~ls~~~s~P~ 68 (132)
+..|.+-.++-|++-.+.|.+..|.-.++.+.+.
T Consensus 22 IlaF~vSm~iGLviG~li~~LltwlSRRRASa~I 55 (197)
T PF15179_consen 22 ILAFCVSMAIGLVIGALIWALLTWLSRRRASARI 55 (197)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhccccccc
Confidence 5677777778889999999999999988877653
No 26
>PF12606 RELT: Tumour necrosis factor receptor superfamily member 19; InterPro: IPR022248 The members of tumor necrosis factor receptor (TNFR) superfamily have been designated as the "guardians of the immune system" due to their roles in immune cell proliferation, differentiation, activation, and death (apoptosis). RELT (receptor expressed in lymphoid tissues) is a member of the TNFR superfamily. The messenger RNA of RELT is especially abundant in hematologic tissues such as spleen, lymph node, and peripheral blood leukocytes as well as in leukemias and lymphomas. RELT is able to activate the NF-kappaB pathway and selectively binds tumor necrosis factor receptor-associated factor 1 []. RELT like proteins 1 and 2 (RELL1 and RELL2) are two RELT homologues that bind to RELT. The expression of RELL1 at the mRNA level is ubiquitous, whereas expression of RELL2 mRNA is more restricted to particular tissues [].
Probab=27.73 E-value=1.2e+02 Score=17.00 Aligned_cols=22 Identities=18% Similarity=0.315 Sum_probs=11.2
Q ss_pred HHHHHHHHHHHHHHHHHHhhcC
Q psy5301 111 ICPLLILVTTYVSTFLTISRTY 132 (132)
Q Consensus 111 ~iPl~ii~~cY~~I~~~L~~~~ 132 (132)
++|+.++...=+...+++.|+|
T Consensus 6 iV~i~iv~~lLg~~I~~~~K~y 27 (50)
T PF12606_consen 6 IVSIFIVMGLLGLSICTTLKAY 27 (50)
T ss_pred HHHHHHHHHHHHHHHHHHhhcc
Confidence 4555555544444455555543
No 27
>cd00929 Cyt_c_Oxidase_VIIc Cytochrome c oxidase subunit VIIc. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. The VIIc subunit is found only in eukaryotes and its specific function remains unclear. Peroxide inactivation of bovine CcO coincides with the direct oxidation of tryptophan (W19) within subunit VIIc, along with other structural changes in other subunits.
Probab=27.60 E-value=1.2e+02 Score=16.73 Aligned_cols=17 Identities=12% Similarity=0.112 Sum_probs=12.4
Q ss_pred HHHHHHHHHHHHHHHHH
Q psy5301 100 LYSCFSLFFMFICPLLI 116 (132)
Q Consensus 100 ~~~~~~~~~~F~iPl~i 116 (132)
+.....+..||.+|+.+
T Consensus 23 ~~~~~ffg~GF~~PF~i 39 (46)
T cd00929 23 ALFHLFFGSGFSAPFIV 39 (46)
T ss_pred HHHHHHHHHHHhhhHHH
Confidence 33444678999999985
No 28
>PF04246 RseC_MucC: Positive regulator of sigma(E), RseC/MucC; InterPro: IPR007359 This bacterial family of integral membrane proteins represents a positive regulator of the sigma(E) transcription factor, namely RseC/MucC. The sigma(E) transcription factor is up-regulated by cell envelope protein misfolding, and regulates the expression of genes that are collectively termed ECF (devoted to Extra-Cellular Functions) []. In Pseudomonas aeruginosa, derepression of sigma(E) is associated with the alginate-overproducing phenotype characteristic of chronic respiratory tract colonization in cystic fibrosis patients. The mechanism by which RseC/MucC positively regulates the sigma(E) transcription factor is unknown. RseC is also thought to have a role in thiamine biosynthesis in Salmonella typhimurium []. In addition, this family also includes an N-terminal part of RnfF, a Rhodobacter capsulatus protein, of unknown function, that is essential for nitrogen fixation. This protein also contains a domain found in ApbE protein IPR003374 from INTERPRO, which is itself involved in thiamine biosynthesis.
Probab=27.23 E-value=1.3e+02 Score=19.99 Aligned_cols=22 Identities=27% Similarity=0.478 Sum_probs=16.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q psy5301 35 CFSLFFMFICPLLILVTTYVST 56 (132)
Q Consensus 35 ~~~~~~~y~~Pl~ii~~~y~~i 56 (132)
+-..+..|++||+.+..-....
T Consensus 68 ~~aa~l~Y~lPll~li~g~~l~ 89 (135)
T PF04246_consen 68 LKAAFLVYLLPLLALIAGAVLG 89 (135)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3466889999999887765433
No 29
>PF02935 COX7C: Cytochrome c oxidase subunit VIIc; InterPro: IPR004202 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. This entry represents cytochrome C subunit 7C. The yeast member of this family is called cytochrome C subunit 8P.; GO: 0004129 cytochrome-c oxidase activity; PDB: 3ABL_Y 3ABM_L 2EIM_L 3ASO_L 3AG3_Y 3AG1_Y 1OCC_Y 2DYS_Y 2OCC_L 1V54_L ....
Probab=24.85 E-value=1.6e+02 Score=17.32 Aligned_cols=18 Identities=22% Similarity=0.085 Sum_probs=13.3
Q ss_pred HHHHHHHHHHHHHHHHHH
Q psy5301 100 LYSCFSLFFMFICPLLIL 117 (132)
Q Consensus 100 ~~~~~~~~~~F~iPl~ii 117 (132)
+.....+..||.+|+.+.
T Consensus 41 ~~~~~f~g~GF~~PF~~~ 58 (65)
T PF02935_consen 41 VKFWGFFGSGFAAPFLIV 58 (65)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhHHHHH
Confidence 445556789999999854
No 30
>PF15086 UPF0542: Uncharacterised protein family UPF0542
Probab=23.82 E-value=1.8e+02 Score=17.70 Aligned_cols=28 Identities=14% Similarity=0.466 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhhcc
Q psy5301 33 YSCFSLFFMFICPLLILVTTYVSTFLTISRK 63 (132)
Q Consensus 33 y~~~~~~~~y~~Pl~ii~~~y~~iiw~ls~~ 63 (132)
|..+..+.+-+-|+.+++.. ..|.++..
T Consensus 20 ~~Fl~~vll~LtPlfiisa~---lSwkLaK~ 47 (74)
T PF15086_consen 20 YEFLTTVLLILTPLFIISAV---LSWKLAKA 47 (74)
T ss_pred HHHHHHHHHHHhHHHHHHHH---HHHHHHHH
Confidence 55667778888999988876 56888754
No 31
>PF15468 DUF4636: Domain of unknown function (DUF4636)
Probab=22.71 E-value=1.6e+02 Score=21.95 Aligned_cols=29 Identities=10% Similarity=0.177 Sum_probs=24.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhc
Q psy5301 34 SCFSLFFMFICPLLILVTTYVSTFLTISR 62 (132)
Q Consensus 34 ~~~~~~~~y~~Pl~ii~~~y~~iiw~ls~ 62 (132)
++-.|++.|++-++++++.+...+|.--.
T Consensus 37 ~iG~fLlWyfviilvLm~~~ras~Wmse~ 65 (243)
T PF15468_consen 37 AIGSFLLWYFVIILVLMFFSRASVWMSEK 65 (243)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 46788889999999999999999997643
No 32
>PRK10862 SoxR reducing system protein RseC; Provisional
Probab=20.30 E-value=2.1e+02 Score=19.71 Aligned_cols=18 Identities=22% Similarity=0.364 Sum_probs=13.6
Q ss_pred HHHHHHHHHHHHHHHHHH
Q psy5301 35 CFSLFFMFICPLLILVTT 52 (132)
Q Consensus 35 ~~~~~~~y~~Pl~ii~~~ 52 (132)
+-..+..|++||+.+..-
T Consensus 75 lkaa~lvYllPLl~li~g 92 (154)
T PRK10862 75 LRSALLVYMTPLVGLFLG 92 (154)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 336678899999877764
No 33
>COG3924 Predicted membrane protein [Function unknown]
Probab=20.25 E-value=1.7e+02 Score=17.86 Aligned_cols=22 Identities=18% Similarity=0.319 Sum_probs=15.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q psy5301 35 CFSLFFMFICPLLILVTTYVST 56 (132)
Q Consensus 35 ~~~~~~~y~~Pl~ii~~~y~~i 56 (132)
.+.=......|++.|+.|+..+
T Consensus 44 ~WFE~aCi~lPllFi~l~~~mv 65 (80)
T COG3924 44 LWFEMACILLPLLFIVLCWAMV 65 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3344567788999999987543
Done!