RPS-BLAST 2.2.26 [Sep-21-2011]

Database: CDD.v3.10 
           44,354 sequences; 10,937,602 total letters

Searching..................................................done

Query= psy5301
         (132 letters)



>gnl|CDD|216842 pfam02009, Rifin_STEVOR, Rifin/stevor family.  Several multicopy
           gene families have been described in Plasmodium
           falciparum, including the stevor family of subtelomeric
           open reading frames and the rif interspersed repetitive
           elements. Both families contain three predicted
           transmembrane segments. It has been proposed that stevor
           and rif are members of a larger superfamily that code
           for variant surface antigens.
          Length = 290

 Score = 26.2 bits (58), Expect = 5.4
 Identities = 9/53 (16%), Positives = 12/53 (22%), Gaps = 2/53 (3%)

Query: 33  YSCFSLFFMFICPLLILVTTYVSTFLTISRKCFMSFMVIFHIEKGPFIEDFYQ 85
           YS        I      +   VS       KC  S  +   I     +     
Sbjct: 171 YSAPLTLIGAIAAKAATICAAVSANEGS--KCCFSSKIGLSILSSSTVTSAAS 221


>gnl|CDD|226974 COG4626, COG4626, Phage terminase-like protein, large subunit
           [General function prediction only].
          Length = 546

 Score = 26.2 bits (58), Expect = 6.9
 Identities = 8/39 (20%), Positives = 13/39 (33%), Gaps = 6/39 (15%)

Query: 65  FMSFMVIFHIEKGPFIEDFYQCVTYGFYTEPWQEQLYSC 103
            ++      I  GP    F          EPWQ+ + + 
Sbjct: 40  AIAIFEQLRIVDGPGSPGF------PESLEPWQKFIVAA 72


  Database: CDD.v3.10
    Posted date:  Mar 20, 2013  7:55 AM
  Number of letters in database: 10,937,602
  Number of sequences in database:  44,354
  
Lambda     K      H
   0.338    0.148    0.504 

Gapped
Lambda     K      H
   0.267   0.0738    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 6,803,668
Number of extensions: 597012
Number of successful extensions: 1331
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1289
Number of HSP's successfully gapped: 101
Length of query: 132
Length of database: 10,937,602
Length adjustment: 86
Effective length of query: 46
Effective length of database: 7,123,158
Effective search space: 327665268
Effective search space used: 327665268
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 39 (21.7 bits)
S2: 53 (24.2 bits)