RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy5301
(132 letters)
>3sn6_R Lysozyme, beta-2 adrenergic receptor; seven transmembrane receptor,
nanobody, G protein-coupled RE GPCR, signal
transduction, G protein signaling; HET: P0G; 3.20A
{Enterobacteria phage T4} PDB: 3kj6_A 2r4s_A 2r4r_A
Length = 514
Score = 30.3 bits (68), Expect = 0.16
Identities = 15/66 (22%), Positives = 23/66 (34%)
Query: 65 FMSFMVIFHIEKGPFIEDFYQCVTYGFYTEPWQEQLYSCFSLFFMFICPLLILVTTYVST 124
SF+ I ++ C + + Q Y+ S F PL+I+V Y
Sbjct: 312 LTSFLPIQMHWYRATHQEAINCYAEETCCDFFTNQAYAIASSIVSFYVPLVIMVFVYSRV 371
Query: 125 FLTISR 130
F R
Sbjct: 372 FQEAKR 377
Score = 28.3 bits (63), Expect = 0.73
Identities = 20/120 (16%), Positives = 38/120 (31%), Gaps = 9/120 (7%)
Query: 12 IEDFYQCVTYGFYTEPWQEQLYSCFSLFFMFICPLLILVTTYVSTFLTISR--KCFMSFM 69
++ C + + Q Y+ S F PL+I+V Y F R +
Sbjct: 327 HQEAINCYAEETCCDFFTNQAYAIASSIVSFYVPLVIMVFVYSRVFQEAKRQLQKIDKSE 386
Query: 70 VIFHIEKGPFIEDFYQCVTYGFYTEPWQEQ-------LYSCFSLFFMFICPLLILVTTYV 122
FH++ +E + + + + L F + P I+ +V
Sbjct: 387 GRFHVQNLSQVEQDGRTGHGLRRSSKFCLKEHKALKTLGIIMGTFTLCWLPFFIVNIVHV 446
>3gjx_A Exportin-1; transport, cytoplasm, nucleus, RNA-binding,
acetylation, GTP-binding, HOST-virus interaction,
nucleotide-binding, phosphoprotein; HET: GTP; 2.50A {Mus
musculus} PDB: 3nby_A* 3nbz_A* 3nc0_A* 3nc1_A* 3gb8_A
Length = 1073
Score = 30.3 bits (67), Expect = 0.20
Identities = 16/88 (18%), Positives = 31/88 (35%), Gaps = 1/88 (1%)
Query: 15 FYQCVTYGFYTEPWQEQLYSCFSLFFMFIC-PLLILVTTYVSTFLTISRKCFMSFMVIFH 73
Y Y + + L + + F F+ + TF+ I++KC F+ +
Sbjct: 547 MYIVGQYPRFLRAHWKFLKTVVNKLFEFMHETHDGVQDMACDTFIKIAQKCRRHFVQVQV 606
Query: 74 IEKGPFIEDFYQCVTYGFYTEPWQEQLY 101
E PFI++ + Q+
Sbjct: 607 GEVMPFIDEILNNINTIICDLQPQQVHT 634
>3eml_A Human adenosine A2A receptor/T4 lysozyme chimera; caffeine, GPCR,
membrane protein, LCP, mesophase, structural genomics,
PSI-2; HET: ZMA STE; 2.60A {Homo sapiens} PDB: 3qak_A*
Length = 488
Score = 27.0 bits (59), Expect = 2.2
Identities = 11/52 (21%), Positives = 20/52 (38%), Gaps = 4/52 (7%)
Query: 13 EDFYQCVTYGFYTEPWQEQLYSCFSLFFMFICPLLILVTTYVSTFLTISRKC 64
E C+ + F+ F + PLL+++ Y+ FL R+
Sbjct: 176 EGQVACLFEDVVPMNY----MVYFNFFACVLVPLLLMLGVYLRIFLAARRQL 223
Score = 27.0 bits (59), Expect = 2.4
Identities = 11/50 (22%), Positives = 19/50 (38%), Gaps = 4/50 (8%)
Query: 81 EDFYQCVTYGFYTEPWQEQLYSCFSLFFMFICPLLILVTTYVSTFLTISR 130
E C+ + F+ F + PLL+++ Y+ FL R
Sbjct: 176 EGQVACLFEDVVPMNY----MVYFNFFACVLVPLLLMLGVYLRIFLAARR 221
>4amj_A Beta-1 adrenergic receptor; membrane protein, 7TMR
BETA1-adrenoceptor, stabilising mutat biased agonist;
HET: CVD 2CV; 2.30A {Meleagris gallopavo} PDB: 2y01_A*
2y02_A* 2y03_A* 2y04_A* 4ami_A* 2y00_A* 2vt4_A* 2ycw_A*
2ycx_A* 2ycy_A* 2ycz_A*
Length = 315
Score = 26.6 bits (59), Expect = 2.4
Identities = 11/66 (16%), Positives = 21/66 (31%)
Query: 65 FMSFMVIFHIEKGPFIEDFYQCVTYGFYTEPWQEQLYSCFSLFFMFICPLLILVTTYVST 124
+SF+ I +C + + Y+ S F PLLI++ +
Sbjct: 141 LVSFLPIMMHWWRDEDPQALKCYQDPGCCDFVTNRAYAIASSIISFYIPLLIMIFVALRV 200
Query: 125 FLTISR 130
+
Sbjct: 201 YREAKE 206
>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL
protein transport, transport, cytoplasm, GTPase
activation; HET: GTP; 2.00A {Saccharomyces cerevisiae}
PDB: 2l1l_B
Length = 1049
Score = 26.8 bits (58), Expect = 3.0
Identities = 17/88 (19%), Positives = 29/88 (32%), Gaps = 1/88 (1%)
Query: 15 FYQCVTYGFYTEPWQEQLYSCFSLFFMFICPLLILVTTY-VSTFLTISRKCFMSFMVIFH 73
Y Y + + L + F F+ V TF+ I +KC F++
Sbjct: 521 MYVVGQYPRFLKAHWNFLRTVILKLFEFMHETHEGVQDMACDTFIKIVQKCKYHFVIQQP 580
Query: 74 IEKGPFIEDFYQCVTYGFYTEPWQEQLY 101
E PFI+ + + Q+
Sbjct: 581 RESEPFIQTIIRDIQKTTADLQPQQVHT 608
>4eiy_A Adenosine receptor A2A/soluble cytochrome B562 CH; novel protein
engineering, GPCR network, PSI-biology, struct genomics,
membrane protein, GPCR; HET: ZMA CLR OLA OLC OLB; 1.80A
{Homo sapiens} PDB: 3vg9_A* 3vga_A* 2ydv_A* 2ydo_A*
3uza_A* 3rey_A* 3rfm_A* 3pwh_A* 3uzc_A* 4er9_A
Length = 447
Score = 26.6 bits (58), Expect = 3.2
Identities = 11/51 (21%), Positives = 20/51 (39%), Gaps = 4/51 (7%)
Query: 13 EDFYQCVTYGFYTEPWQEQLYSCFSLFFMFICPLLILVTTYVSTFLTISRK 63
E C+ + F+ F + PLL+++ Y+ FL R+
Sbjct: 186 EGQVACLFEDVVPMNY----MVYFNFFACVLVPLLLMLGVYLRIFLAARRQ 232
Score = 26.6 bits (58), Expect = 3.3
Identities = 11/50 (22%), Positives = 19/50 (38%), Gaps = 4/50 (8%)
Query: 81 EDFYQCVTYGFYTEPWQEQLYSCFSLFFMFICPLLILVTTYVSTFLTISR 130
E C+ + F+ F + PLL+++ Y+ FL R
Sbjct: 186 EGQVACLFEDVVPMNY----MVYFNFFACVLVPLLLMLGVYLRIFLAARR 231
>2rh1_A Beta-2-adrenergic receptor/T4-lysozyme chimera; GPCR, 7TM, fusion,
lipidic cubic phase, lipidic, mesophase, cholesterol,
membrane protein; HET: MAL CAU CLR PLM 12P; 2.40A {Homo
sapiens} PDB: 3p0g_A* 3d4s_A* 3ny8_A* 3ny9_A* 3nya_A*
3pds_A*
Length = 500
Score = 26.2 bits (57), Expect = 4.0
Identities = 15/67 (22%), Positives = 23/67 (34%)
Query: 65 FMSFMVIFHIEKGPFIEDFYQCVTYGFYTEPWQEQLYSCFSLFFMFICPLLILVTTYVST 124
SF+ I ++ C + + Q Y+ S F PL+I+V Y
Sbjct: 170 LTSFLPIQMHWYRATHQEAINCYAEETCCDFFTNQAYAIASSIVSFYVPLVIMVFVYSRV 229
Query: 125 FLTISRT 131
F R
Sbjct: 230 FQEAKRQ 236
>2z73_A Rhodopsin; visual pigment, GQ-type, G-protein coupled receptor,
chromophore, glycoprotein, lipoprotein, membrane,
palmitate phosphorylation; HET: BOG RET PLM TWT PC1;
2.50A {Todarodes pacificus} PDB: 3aym_A* 3ayn_A* 2ziy_A*
Length = 448
Score = 26.0 bits (57), Expect = 4.1
Identities = 6/40 (15%), Positives = 15/40 (37%)
Query: 23 FYTEPWQEQLYSCFSLFFMFICPLLILVTTYVSTFLTISR 62
+ + + F P+LI+ Y + +++S
Sbjct: 190 YISRDSTTRSNILCMFILGFFGPILIIFFCYFNIVMSVSN 229
Score = 26.0 bits (57), Expect = 4.1
Identities = 6/40 (15%), Positives = 15/40 (37%)
Query: 91 FYTEPWQEQLYSCFSLFFMFICPLLILVTTYVSTFLTISR 130
+ + + F P+LI+ Y + +++S
Sbjct: 190 YISRDSTTRSNILCMFILGFFGPILIIFFCYFNIVMSVSN 229
>3c2g_A SYS-1 protein; beta-catenin, phylogeny, SYS-1, developmental
protein, DNA-binding, nucleus; 2.50A {Caenorhabditis
elegans} PDB: 3c2h_A*
Length = 619
Score = 25.5 bits (55), Expect = 6.8
Identities = 12/45 (26%), Positives = 23/45 (51%)
Query: 30 EQLYSCFSLFFMFICPLLILVTTYVSTFLTISRKCFMSFMVIFHI 74
++L SC S M LL L +T + +F+ + R F+ + ++
Sbjct: 441 KKLMSCLSCEGMDTPGLLELRSTILRSFILLLRTPFVPKDGVLNV 485
Score = 25.1 bits (54), Expect = 9.3
Identities = 12/34 (35%), Positives = 19/34 (55%)
Query: 98 EQLYSCFSLFFMFICPLLILVTTYVSTFLTISRT 131
++L SC S M LL L +T + +F+ + RT
Sbjct: 441 KKLMSCLSCEGMDTPGLLELRSTILRSFILLLRT 474
>2ks9_A Substance-P receptor; water, autodock, NK1, neuropeptide
receptor-NEU complex; NMR {Homo sapiens} PDB: 2ksa_A
2ksb_A
Length = 364
Score = 25.0 bits (55), Expect = 8.4
Identities = 7/44 (15%), Positives = 17/44 (38%), Gaps = 1/44 (2%)
Query: 12 IEDFYQC-VTYGFYTEPWQEQLYSCFSLFFMFICPLLILVTTYV 54
+ C + + + E++Y ++ PLL++ Y
Sbjct: 174 MPSRVVCMIEWPEHPNKIYEKVYHICVTVLIYFLPLLVIGYAYT 217
Score = 25.0 bits (55), Expect = 8.4
Identities = 7/44 (15%), Positives = 17/44 (38%), Gaps = 1/44 (2%)
Query: 80 IEDFYQC-VTYGFYTEPWQEQLYSCFSLFFMFICPLLILVTTYV 122
+ C + + + E++Y ++ PLL++ Y
Sbjct: 174 MPSRVVCMIEWPEHPNKIYEKVYHICVTVLIYFLPLLVIGYAYT 217
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.338 0.148 0.504
Gapped
Lambda K H
0.267 0.0536 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,015,775
Number of extensions: 99734
Number of successful extensions: 250
Number of sequences better than 10.0: 1
Number of HSP's gapped: 249
Number of HSP's successfully gapped: 40
Length of query: 132
Length of database: 6,701,793
Length adjustment: 83
Effective length of query: 49
Effective length of database: 4,384,350
Effective search space: 214833150
Effective search space used: 214833150
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 39 (21.7 bits)
S2: 52 (24.3 bits)