Query psy5302
Match_columns 333
No_of_seqs 300 out of 1643
Neff 8.3
Searched_HMMs 29240
Date Fri Aug 16 23:05:27 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy5302.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/5302hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2qkb_A Ribonuclease H1, HS-RNA 99.9 3.5E-25 1.2E-29 185.1 11.7 125 95-228 4-152 (154)
2 3h08_A RNH (ribonuclease H); R 99.9 2.4E-24 8.1E-29 178.5 8.8 119 97-227 3-144 (146)
3 3qio_A GAG-POL polyprotein; RN 99.9 7.8E-24 2.7E-28 175.9 11.5 121 93-227 7-147 (150)
4 2kq2_A Ribonuclease H-related 99.9 4.3E-24 1.5E-28 177.0 7.2 127 95-229 3-139 (147)
5 3p1g_A Xenotropic murine leuke 99.9 2.2E-23 7.6E-28 175.6 11.4 121 97-228 22-157 (165)
6 1jl1_A Ribonuclease HI; RNAse 99.9 1.6E-23 5.6E-28 175.1 10.2 120 97-228 3-144 (155)
7 2e4l_A Ribonuclease HI, RNAse 99.9 2.3E-23 7.7E-28 174.8 10.4 119 97-227 5-145 (158)
8 1ril_A Ribonuclease H; hydrola 99.9 3.5E-23 1.2E-27 175.0 7.0 120 97-228 7-149 (166)
9 2lsn_A Reverse transcriptase; 99.9 6.7E-22 2.3E-26 166.3 11.2 122 96-226 5-162 (165)
10 3hst_B Protein RV2228C/MT2287; 99.8 3.8E-19 1.3E-23 145.8 12.9 121 98-228 3-134 (141)
11 3u3g_D Ribonuclease H, RNAse H 99.8 3E-19 1E-23 145.9 11.5 122 97-227 2-137 (140)
12 1mu2_A HIV-2 RT; HIV-2 reverse 99.8 2.9E-19 9.8E-24 178.3 12.3 116 96-225 434-555 (555)
13 2zd1_A Reverse transcriptase/r 99.8 2E-19 6.9E-24 179.4 10.1 116 96-224 437-557 (557)
14 2ehg_A Ribonuclease HI; RNAse 99.8 7.9E-19 2.7E-23 145.5 10.2 117 99-228 2-135 (149)
15 1zbf_A Ribonuclease H-related 99.3 3.2E-13 1.1E-17 110.4 3.2 118 94-219 7-139 (142)
16 4htu_A Ribonuclease H, RNAse H 99.1 8.7E-11 3E-15 94.3 6.3 76 96-178 3-84 (134)
17 3bsu_A Ribonuclease H1, RNAse 90.9 0.012 4.1E-07 38.9 -2.7 37 51-87 12-48 (53)
18 1qhk_A RNAse HI, protein (ribo 90.7 0.01 3.5E-07 38.2 -3.1 35 51-85 10-44 (47)
19 1rw3_A POL polyprotein; RNA an 79.4 0.57 1.9E-05 44.8 1.2 73 96-176 344-427 (455)
20 2zd1_B P51 RT; P51/P66, hetero 67.0 14 0.00047 34.8 7.5 91 81-176 297-405 (428)
21 3alr_A Nanos protein; zinc-fin 27.0 32 0.0011 25.5 2.0 23 310-332 72-94 (106)
22 2zd1_A Reverse transcriptase/r 24.8 2.4E+02 0.0083 27.0 8.6 90 81-177 299-408 (557)
23 2z3g_A Blasticidin-S deaminase 22.0 97 0.0033 23.8 4.1 51 111-167 28-80 (130)
No 1
>2qkb_A Ribonuclease H1, HS-RNAse HC, RNAse H1; RNA/DNA hybrid; 2.40A {Homo sapiens} PDB: 2qk9_A 2qkk_A*
Probab=99.92 E-value=3.5e-25 Score=185.12 Aligned_cols=125 Identities=25% Similarity=0.346 Sum_probs=98.0
Q ss_pred CCCcEEEEecCCCCCCC-----cceEEe--cC-ceeEEeecCCCcchHHHHHHHHHHHHHHHhhhccCcCCcceEEEEeC
Q psy5302 95 PVDSTVIYTDASKTDVA-----VSSAFC--SQ-DIKFSTRLHSLLSICNAELTSILFAIHFLLSSCLNEHTQACFVICSD 166 (333)
Q Consensus 95 ~~~~~~iytDGS~~~~~-----~G~g~~--~~-~~~~~~~l~~~~s~~~AEl~Ai~~al~~~~~~~~~~~~~~~i~I~sD 166 (333)
+.+.++||||||+..++ +|+|+| ++ ....+..+...+|++.||+.|++.||+.+...... . |.|+||
T Consensus 4 ~~~~~~iytDGs~~~n~~~~~~aG~Gvv~~~~~~~~~~~~l~~~~tn~~aEl~A~~~aL~~~~~~~~~---~--v~i~tD 78 (154)
T 2qkb_A 4 MGDFVVVYTDGCCSSNGRRRPRAGIGVYWGPGHPLNVGIRLPGRQTNQRAEIHAACKAIEQAKTQNIN---K--LVLYTN 78 (154)
T ss_dssp ETTEEEEEEEEEEETTTSSSCEEEEEEECSTTCTTCEEEECCSSCCHHHHHHHHHHHHHHHHHHTTCC---E--EEEEES
T ss_pred CCCeEEEEEccCcCCCCCCCCcEEEEEEEECCCceeEEeecCCCCchHHHHHHHHHHHHHHHHhCCCc---e--EEEEEC
Confidence 35679999999986432 688887 32 22345566557899999999999999999876543 4 999999
Q ss_pred cHHHHHHHcCCC---------C-------CchHHHHHHHHHHhhcCCCceEEEEecCCCCCccchhhhHHHHHHhcCC
Q psy5302 167 SLSALQTLQNVF---------S-------LNPIASEIRNLILENKSKLSIRFIWVPSHVGIAGNEEADRLAKEALTST 228 (333)
Q Consensus 167 s~~~~~~l~~~~---------~-------~~~~~~~i~~~~~~~~~~~~v~~~wVp~H~g~~gNe~AD~lAk~a~~~~ 228 (333)
|+++++.|..|. . ..+++++|.+++ .+..|.|.|||||+|++|||.||+|||+|+..+
T Consensus 79 S~~vi~~i~~~~~~w~~~~w~~~~~~~~~n~~l~~~i~~l~----~~~~v~~~~V~~H~g~~~N~~AD~LA~~a~~~~ 152 (154)
T 2qkb_A 79 SMFTINGITNWVQGWKKNGWKTSAGKEVINKEDFVALERLT----QGMDIQWMHVPGHSGFIGNEEADRLAREGAKQS 152 (154)
T ss_dssp CHHHHHHHHTHHHHHHTTTSBCTTSSBCTTHHHHHHHHHHH----TTCEEEEEECCTTSSCHHHHHHHHHHHHHHTCC
T ss_pred cHHHHhhhhhhHHHHHhccccccCCCccccHHHHHHHHHHH----cCCceEEEEccCCCCCHhHHHHHHHHHHHHHhc
Confidence 999999998742 1 124666776665 246799999999999999999999999998764
No 2
>3h08_A RNH (ribonuclease H); RNAse H, 3D-structure, endonuclease, hydrolase, magnesium, metal-binding; 1.60A {Chlorobaculum tepidum}
Probab=99.90 E-value=2.4e-24 Score=178.45 Aligned_cols=119 Identities=19% Similarity=0.135 Sum_probs=91.7
Q ss_pred CcEEEEecCCCCCC--CcceEEe--cCce--eEEeecCCCcchHHHHHHHHHHHHHHHhhhccCcCCcceEEEEeCcHHH
Q psy5302 97 DSTVIYTDASKTDV--AVSSAFC--SQDI--KFSTRLHSLLSICNAELTSILFAIHFLLSSCLNEHTQACFVICSDSLSA 170 (333)
Q Consensus 97 ~~~~iytDGS~~~~--~~G~g~~--~~~~--~~~~~l~~~~s~~~AEl~Ai~~al~~~~~~~~~~~~~~~i~I~sDs~~~ 170 (333)
..++||||||+..+ ..|+|++ .++. ..+..+ ..+|++.||+.|++.||+.+.+ .. . |.|+|||++|
T Consensus 3 ~~i~iytDGs~~~n~g~~g~G~v~~~~~~~~~~~~~~-~~~Tnn~aEl~A~~~AL~~~~~--~~---~--v~I~tDS~~v 74 (146)
T 3h08_A 3 KTITIYTDGAASGNPGKGGWGALLMYGSSRKEISGYD-PATTNNRMELMAAIKGLEALKE--PA---R--VQLYSDSAYL 74 (146)
T ss_dssp CEEEEEEEEEESSTTEEEEEEEEEEETTEEEEEEEEE-EEECHHHHHHHHHHHHHHTCSS--CC---E--EEEEESCHHH
T ss_pred ceEEEEEecCCCCCCCceEEEEEEEECCeeEEeecCC-CCCcHHHHHHHHHHHHHHhcCc--cC---c--EEEEeChHHH
Confidence 56999999997653 3788877 3332 233333 3689999999999999999875 22 3 9999999999
Q ss_pred HHHHcC-CC----------------CCchHHHHHHHHHHhhcCCCceEEEEecCCCCCccchhhhHHHHHHhcC
Q psy5302 171 LQTLQN-VF----------------SLNPIASEIRNLILENKSKLSIRFIWVPSHVGIAGNEEADRLAKEALTS 227 (333)
Q Consensus 171 ~~~l~~-~~----------------~~~~~~~~i~~~~~~~~~~~~v~~~wVp~H~g~~gNe~AD~lAk~a~~~ 227 (333)
+..|.. |. ...++++++.+++. ...|.|.|||||+|+++||.||+|||+|+..
T Consensus 75 i~~i~~~w~~~W~~~~w~~~~~~~v~n~~l~~~~~~~~~----~~~v~~~~V~gH~g~~~N~~AD~LA~~a~~~ 144 (146)
T 3h08_A 75 VNAMNEGWLKRWVKNGWKTAAKKPVENIDLWQEILKLTT----LHRVTFHKVKGHSDNPYNSRADELARLAIKE 144 (146)
T ss_dssp HHHHHSSHHHHHHHTTCC----CCCTTHHHHHHHHHHHH----HSEEEEEECCC-CCSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCccCCCCCcCCHHHHHHHHHHHh----hCceEEEEcCCcCCcHhHHHHHHHHHHHHHh
Confidence 999988 31 12347777777763 2469999999999999999999999999864
No 3
>3qio_A GAG-POL polyprotein; RNAse H, inhibitor, nuclease, transferase, hydrolase- complex; HET: QID; 1.40A {Hiv-1 M} SCOP: c.55.3.1 PDB: 3qin_A* 3hyf_A* 1o1w_A 3lp3_A* 1hrh_A 3k2p_A* 1rdh_A
Probab=99.90 E-value=7.8e-24 Score=175.93 Aligned_cols=121 Identities=21% Similarity=0.310 Sum_probs=93.2
Q ss_pred hCCCCcEEEEecCCCCC--CCcceEEe--cCceeEEeecCCCcchHHHHHHHHHHHHHHHhhhccCcCCcceEEEEeCcH
Q psy5302 93 QVPVDSTVIYTDASKTD--VAVSSAFC--SQDIKFSTRLHSLLSICNAELTSILFAIHFLLSSCLNEHTQACFVICSDSL 168 (333)
Q Consensus 93 ~~~~~~~~iytDGS~~~--~~~G~g~~--~~~~~~~~~l~~~~s~~~AEl~Ai~~al~~~~~~~~~~~~~~~i~I~sDs~ 168 (333)
.+..+.+.||||||+.. +..|+|++ ++. ...+.+ ..+|++.||+.|++.||+.+ . . . |.|+|||+
T Consensus 7 ~P~~~~~~iytDGs~~~n~g~~g~G~v~~~~~-~~~~~~-~~~Tnn~aEl~A~i~AL~~~---~-~---~--v~i~tDS~ 75 (150)
T 3qio_A 7 EPIVGAETFYVDGAANRETKLGKAGYVTNRGR-QKVVTL-TDTTNQKTELQAIYLALQDS---G-L---E--VNIVTDSQ 75 (150)
T ss_dssp SCCTTCEEEEEEEEECTTTCCEEEEEEETTSC-EEEEEE-SSCCHHHHHHHHHHHHHHHS---C-S---E--EEEEESCH
T ss_pred CCCCCCEEEEEccCCCCCCCCeEEEEEEEcCC-EEEEeC-CCCCHHHHHHHHHHHHHHhC---C-C---c--EEEEeCcH
Confidence 45567899999999753 33778877 332 223333 46899999999999999985 1 2 3 99999999
Q ss_pred HHHHHHcCCC----------------CCchHHHHHHHHHHhhcCCCceEEEEecCCCCCccchhhhHHHHHHhcC
Q psy5302 169 SALQTLQNVF----------------SLNPIASEIRNLILENKSKLSIRFIWVPSHVGIAGNEEADRLAKEALTS 227 (333)
Q Consensus 169 ~~~~~l~~~~----------------~~~~~~~~i~~~~~~~~~~~~v~~~wVp~H~g~~gNe~AD~lAk~a~~~ 227 (333)
+++++|..|. ...++++++.+++ .....|.|.|||||+|++|||.||+||++|+..
T Consensus 76 ~v~~~i~~w~~~W~~~gw~~~~g~~v~n~~l~~~l~~~l---~~~~~v~~~wV~gH~g~~~Ne~AD~LA~~a~~~ 147 (150)
T 3qio_A 76 YALGIITQWIHNWKKRGWKTADKKPVKNVDLVNQIIEQL---IKKEKVYLAWVPAHKGIGGNEQVDKLVSAGIRK 147 (150)
T ss_dssp HHHHHHHHHHHHHCC------------CHHHHHHHHHHH---TTCSEEEEEECCTTSCCHHHHHHHHHHHTTTSC
T ss_pred HHHHHHHHHHHHHhhcCcCcCcCcccccHHHHHHHHHHH---hhcCceEEEEccCcCCChhHHHHHHHHHHHHHH
Confidence 9999998762 1123556555544 467899999999999999999999999999875
No 4
>2kq2_A Ribonuclease H-related protein; PSI, NESG, protein structure, APO enzyme, structural genomics, protein structure initiative; NMR {Desulfitobacterium hafniense dcb-2} PDB: 2kw4_A
Probab=99.89 E-value=4.3e-24 Score=177.03 Aligned_cols=127 Identities=17% Similarity=0.103 Sum_probs=96.7
Q ss_pred CCCcEEEEecCCCCCCCcceEEe--c-Cce-eEEe-ec--CC--CcchHHHHHHHHHHHHHHHhhhccCcCCcceEEEEe
Q psy5302 95 PVDSTVIYTDASKTDVAVSSAFC--S-QDI-KFST-RL--HS--LLSICNAELTSILFAIHFLLSSCLNEHTQACFVICS 165 (333)
Q Consensus 95 ~~~~~~iytDGS~~~~~~G~g~~--~-~~~-~~~~-~l--~~--~~s~~~AEl~Ai~~al~~~~~~~~~~~~~~~i~I~s 165 (333)
+++.++||||||+..+.+|+|+| . +.. ..+. +. +. ..|++.||+.|++.||+.+.+.+.+ |.|+|
T Consensus 3 ~~~~i~iytDGs~~~g~~G~G~vi~~~g~~~~~~~~~~~~~~~~~~tNn~aEl~A~~~AL~~a~~~~~~------v~I~t 76 (147)
T 2kq2_A 3 DRTEYDVYTDGSYVNGQYAWAYAFVKDGKVHYEDADVGKNPAAATMRNVAGEIAAALYAVKKASQLGVK------IRILH 76 (147)
T ss_dssp TTSCCEEECCCCCBTTBCEEEEEEEETTEEEEEEEEECCCGGGGGTCTTHHHHHHHHHHHHHHHHHTCC------CCBSS
T ss_pred CCCeEEEEECCCCCCCCcEEEEEEEECCEEEEEEeccccccccccccHHHHHHHHHHHHHHHHHHCCCe------EEEEE
Confidence 45779999999998877899987 3 332 2333 22 22 3699999999999999998775443 99999
Q ss_pred CcHHHHHHHcC-CCCCchHHHHHHHHHHhhcCCCceEEEEecCCCCCccchhhhHHHHHHhcCCC
Q psy5302 166 DSLSALQTLQN-VFSLNPIASEIRNLILENKSKLSIRFIWVPSHVGIAGNEEADRLAKEALTSTH 229 (333)
Q Consensus 166 Ds~~~~~~l~~-~~~~~~~~~~i~~~~~~~~~~~~v~~~wVp~H~g~~gNe~AD~lAk~a~~~~~ 229 (333)
||+.+...+.+ |....+....+.+++..... .|.|.|||||+|++|||+||+|||+|+....
T Consensus 77 DS~~i~~w~~~~w~~~~~~~~~~~~l~~~l~~--~v~~~wV~gH~g~~~Ne~AD~LA~~a~~~~~ 139 (147)
T 2kq2_A 77 DYAGIAFWATGEWKAKNEFTQAYAKLMNQYRG--IYSFEKVKAHSGNEFNDYVDMKAKSALGIRD 139 (147)
T ss_dssp CCSTHHHHTTSSSSCCHHHHHHHHCGGGGGST--TCCBCCCCCCCCCHHHHHHHHHHHHHHTCCC
T ss_pred CcHHHHHHHhCCCccCCcchHHHHHHHHHhcC--CeeEEEecCcCCCcchHHHHHHHHHHHhccc
Confidence 99987765554 44455555666666633222 8999999999999999999999999998773
No 5
>3p1g_A Xenotropic murine leukemia virus-related virus (X H domain; XMRV, RNAse H, reverse transcriptase, transcription; 1.50A {Xenotropic mulv-related virus} PDB: 3v1q_A 3v1o_A 3v1r_A* 2hb5_A 4e89_A
Probab=99.89 E-value=2.2e-23 Score=175.60 Aligned_cols=121 Identities=20% Similarity=0.157 Sum_probs=91.4
Q ss_pred CcEEEEecCCCC--CCCcceEEe--c-CceeEEeecCCCcchHHHHHHHHHHHHHHHhhhccCcCCcceEEEEeCcHHHH
Q psy5302 97 DSTVIYTDASKT--DVAVSSAFC--S-QDIKFSTRLHSLLSICNAELTSILFAIHFLLSSCLNEHTQACFVICSDSLSAL 171 (333)
Q Consensus 97 ~~~~iytDGS~~--~~~~G~g~~--~-~~~~~~~~l~~~~s~~~AEl~Ai~~al~~~~~~~~~~~~~~~i~I~sDs~~~~ 171 (333)
..+.||||||+. +|..|+|++ . +.......+...+|++.||+.|++.||+.+. . ..|.|+|||++++
T Consensus 22 ~~i~iytDGs~~~npG~~g~G~vi~~~~~~~~~~~~~~~~Tnn~aEl~Ai~~AL~~~~---~-----~~v~I~tDS~~vi 93 (165)
T 3p1g_A 22 ADYTWYTDGSSFLQEGQRRAGAAVTTETEVIWARALPAGTSAQRAELIALTQALKMAE---G-----KKLNVYTDSRYAF 93 (165)
T ss_dssp CSEEEEEEEEEEEETTEEEEEEEEECSSCEEEEEEECTTCCHHHHHHHHHHHHHHHTB---T-----SEEEEEECCHHHH
T ss_pred CCEEEEEEcccCCCCCceEEEEEEEECCEEEEEecCCCCCcHHHHHHHHHHHHHHHcc---C-----ceEEEEEchHHHH
Confidence 359999999986 455778765 3 3332222456678999999999999999982 2 2399999999999
Q ss_pred HHHcCCCC-----CchHHHHHHHHHHhhcCCCceEEEEecCCCC-----CccchhhhHHHHHHhcCC
Q psy5302 172 QTLQNVFS-----LNPIASEIRNLILENKSKLSIRFIWVPSHVG-----IAGNEEADRLAKEALTST 228 (333)
Q Consensus 172 ~~l~~~~~-----~~~~~~~i~~~~~~~~~~~~v~~~wVp~H~g-----~~gNe~AD~lAk~a~~~~ 228 (333)
+++-.... ..++++++.+.+ ..+..|.|.|||||+| ++|||+||+|||+|+...
T Consensus 94 ~~iw~~~~g~~v~n~dl~~~l~~~l---~~~~~v~~~wVkgH~g~~~~~~~gNe~AD~LA~~aa~~~ 157 (165)
T 3p1g_A 94 ATAHVHSEGREIKNKNEILALLKAL---FLPKRLSIIHCPGHQKGNSAEARGNRMADQAAREAAMKA 157 (165)
T ss_dssp HHHHSCCCSCCCSSHHHHHHHHHHT---TSBSEEEEEECCSSCCSCSHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhcccCCCcccCHHHHHHHHHHH---hcCCceEEEEecCCCCCCcCcchHHHHHHHHHHHHHhcC
Confidence 99821111 123455554433 4678999999999999 999999999999999876
No 6
>1jl1_A Ribonuclease HI; RNAse HI, protein stability, thermostability, hydrogen exchange, cooperativity, hydrolase; 1.30A {Escherichia coli} SCOP: c.55.3.1 PDB: 1f21_A 1jxb_A 1g15_A 1rch_A 1rdd_A 1rnh_A* 2rn2_A 1rda_A 1law_A 1rdb_A 1lav_A 3aa4_A 1rbu_A 1gob_A 1rdc_A 1kvc_A 3aa3_A 3aa2_A 3aa5_X 1rbv_A ...
Probab=99.89 E-value=1.6e-23 Score=175.11 Aligned_cols=120 Identities=20% Similarity=0.258 Sum_probs=92.5
Q ss_pred CcEEEEecCCCCCC--CcceEEe--cCc--eeEEeecCCCcchHHHHHHHHHHHHHHHhhhccCcCCcceEEEEeCcHHH
Q psy5302 97 DSTVIYTDASKTDV--AVSSAFC--SQD--IKFSTRLHSLLSICNAELTSILFAIHFLLSSCLNEHTQACFVICSDSLSA 170 (333)
Q Consensus 97 ~~~~iytDGS~~~~--~~G~g~~--~~~--~~~~~~l~~~~s~~~AEl~Ai~~al~~~~~~~~~~~~~~~i~I~sDs~~~ 170 (333)
..+.||||||+..+ .+|+|++ ..+ ...+..+ ...|++.||+.|++.||+.+... . . |.|+|||+++
T Consensus 3 ~~~~iytDGs~~~n~~~~G~G~v~~~~~~~~~~~~~~-~~~tn~~aEl~A~~~aL~~~~~~--~---~--v~I~tDS~~v 74 (155)
T 1jl1_A 3 KQVEIFTAGSALGNPGPGGYGAILRYRGREKTFSAGY-TRTTNNRMELMAAIVALEALKEH--A---E--VILSTDSQYV 74 (155)
T ss_dssp CCEEEEEEEEESSTTEEEEEEEEEEETTEEEEEEEEE-EEECHHHHHHHHHHHHHHTCCSC--C---E--EEEEECCHHH
T ss_pred ceEEEEEccccCCCCCceEEEEEEEECCeEEEEecCC-CCCcHHHHHHHHHHHHHHHhCcC--C---c--EEEEeCHHHH
Confidence 35899999998643 3788877 322 2233333 36789999999999999998752 2 3 9999999999
Q ss_pred HHHHcCCC---------C-------CchHHHHHHHHHHhhcCCCceEEEEecCCCCCccchhhhHHHHHHhcCC
Q psy5302 171 LQTLQNVF---------S-------LNPIASEIRNLILENKSKLSIRFIWVPSHVGIAGNEEADRLAKEALTST 228 (333)
Q Consensus 171 ~~~l~~~~---------~-------~~~~~~~i~~~~~~~~~~~~v~~~wVp~H~g~~gNe~AD~lAk~a~~~~ 228 (333)
++.|..|. . ..++++.|.+++ ....|.|.|||||+|++||+.||+|||+|+..+
T Consensus 75 i~~i~~w~~~W~~n~~~~~~g~~v~n~~l~~~i~~l~----~~~~v~~~wV~gH~g~~~Ne~AD~LA~~a~~~~ 144 (155)
T 1jl1_A 75 RQGITQWIHNWKKRGWKTADKKPVKNVDLWQRLDAAL----GQHQIKWEWVKGHAGHPENERADELARAAAMNP 144 (155)
T ss_dssp HHHHHTTHHHHHHTTTBCTTSCBCTTHHHHHHHHHHT----TTCEEEEEECCSSTTCHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHhhcccccccCCccCCHHHHHHHHHHH----ccCceEEEEcCCCCCCHHHHHHHHHHHHHHhcc
Confidence 99998731 1 124566666554 346899999999999999999999999999876
No 7
>2e4l_A Ribonuclease HI, RNAse HI; hydrolase, endoribonuclease; 2.00A {Shewanella oneidensis} PDB: 2zqb_A
Probab=99.89 E-value=2.3e-23 Score=174.81 Aligned_cols=119 Identities=23% Similarity=0.248 Sum_probs=92.3
Q ss_pred CcEEEEecCCCCC--CCcceEEe--cCce--eEEeecCCCcchHHHHHHHHHHHHHHHhhhccCcCCcceEEEEeCcHHH
Q psy5302 97 DSTVIYTDASKTD--VAVSSAFC--SQDI--KFSTRLHSLLSICNAELTSILFAIHFLLSSCLNEHTQACFVICSDSLSA 170 (333)
Q Consensus 97 ~~~~iytDGS~~~--~~~G~g~~--~~~~--~~~~~l~~~~s~~~AEl~Ai~~al~~~~~~~~~~~~~~~i~I~sDs~~~ 170 (333)
..+.||||||+.. +.+|+|+| .++. ..+..+ ...|++.||+.|++.||+.+... . . |.|+|||++|
T Consensus 5 ~~i~iytDGs~~~n~g~~G~G~v~~~~~~~~~~~~~~-~~~tn~~aEl~A~~~AL~~~~~~--~---~--v~I~tDS~~v 76 (158)
T 2e4l_A 5 KLIHIFTDGSCLGNPGPGGYGIVMNYKGHTKEMSDGF-SLTTNNRMELLAPIVALEALKEP--C---K--IILTSDSQYM 76 (158)
T ss_dssp CEEEEEEEEEESSSSEEEEEEEEEEETTEEEEEEEEE-EEECHHHHHHHHHHHHHHTCSSC--C---E--EEEEECCHHH
T ss_pred CeEEEEEcccccCCCCcEEEEEEEEECCEEEEEecCc-CCCccHHHHHHHHHHHHHHhccC--C---e--EEEEeCHHHH
Confidence 4689999999864 34788877 3322 233333 35799999999999999988542 2 3 9999999999
Q ss_pred HHHHcCC---------CC-------CchHHHHHHHHHHhhcCCCceEEEEecCCCCCccchhhhHHHHHHhcC
Q psy5302 171 LQTLQNV---------FS-------LNPIASEIRNLILENKSKLSIRFIWVPSHVGIAGNEEADRLAKEALTS 227 (333)
Q Consensus 171 ~~~l~~~---------~~-------~~~~~~~i~~~~~~~~~~~~v~~~wVp~H~g~~gNe~AD~lAk~a~~~ 227 (333)
++.|..| .. ..++++.|.+++ ....|.|.|||||+|+++|+.||+|||+|+..
T Consensus 77 i~~i~~w~~~W~~n~~~~~~g~~v~n~~l~~~i~~l~----~~~~v~~~wV~gH~g~~~Ne~AD~LAk~a~~~ 145 (158)
T 2e4l_A 77 RQGIMTWIHGWKKKGWMTSNRTPVKNVDLWKRLDKAA----QLHQIDWRWVKGHAGHAENERCDQLARAAAEA 145 (158)
T ss_dssp HHHHHTHHHHHHHTTTBCTTSSBCTTHHHHHHHHHHH----TTSEEEEEECCTTCCCHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHccccccCCCcccCHHHHHHHHHHH----ccCcEEEEEccCCCCchhHHHHHHHHHHHHHh
Confidence 9999882 11 124666776665 23689999999999999999999999999987
No 8
>1ril_A Ribonuclease H; hydrolase(endoribonuclease); 2.80A {Thermus thermophilus} SCOP: c.55.3.1 PDB: 2rpi_A
Probab=99.88 E-value=3.5e-23 Score=174.99 Aligned_cols=120 Identities=17% Similarity=0.130 Sum_probs=93.1
Q ss_pred CcEEEEecCCCCCC--CcceEEe--cCc-e-eEEeecCCCcchHHHHHHHHHHHHHHHhhhccCcCCcceEEEEeCcHHH
Q psy5302 97 DSTVIYTDASKTDV--AVSSAFC--SQD-I-KFSTRLHSLLSICNAELTSILFAIHFLLSSCLNEHTQACFVICSDSLSA 170 (333)
Q Consensus 97 ~~~~iytDGS~~~~--~~G~g~~--~~~-~-~~~~~l~~~~s~~~AEl~Ai~~al~~~~~~~~~~~~~~~i~I~sDs~~~ 170 (333)
..++||||||+..+ ..|+|+| .++ . ..+... ...|++.||+.|++.||+.+... ..|.|+|||+++
T Consensus 7 ~~i~iytDGs~~~n~g~~G~G~v~~~~~~~~~~~~~~-~~~Tnn~aEl~Ai~~AL~~~~~~-------~~v~I~tDS~~v 78 (166)
T 1ril_A 7 KRVALFTDGACLGNPGPGGWAALLRFHAHEKLLSGGE-ACTTNNRMELKAAIEGLKALKEP-------CEVDLYTDSHYL 78 (166)
T ss_dssp CCCCEEEEEEESSTTEEEEEEEEECBTTBCCEECCEE-EEECHHHHHHHHHHHHHHSCCSC-------CEEEEECCCHHH
T ss_pred ccEEEEECccccCCCCCEEEEEEEEECCEEEEEecCC-CCCcHHHHHHHHHHHHHHHhccC-------CeEEEEeChHHH
Confidence 57899999998643 3788877 322 1 222222 35799999999999999987653 139999999999
Q ss_pred HHHHcC----------CCCC-------chHHHHHHHHHHhhcCCCceEEEEecCCCCCccchhhhHHHHHHhcCC
Q psy5302 171 LQTLQN----------VFSL-------NPIASEIRNLILENKSKLSIRFIWVPSHVGIAGNEEADRLAKEALTST 228 (333)
Q Consensus 171 ~~~l~~----------~~~~-------~~~~~~i~~~~~~~~~~~~v~~~wVp~H~g~~gNe~AD~lAk~a~~~~ 228 (333)
+..|.. |... .++++.|.+++ ....|.|.|||||+|+++|+.||+|||+|+...
T Consensus 79 i~~i~~~w~~~W~~~~w~~~~g~~v~n~~l~~~i~~l~----~~~~v~~~wV~gH~g~~~Ne~AD~LAk~a~~~~ 149 (166)
T 1ril_A 79 KKAFTEGWLEGWRKRGWRTAEGKPVKNRDLWEALLLAM----APHRVRFHFVKGHTGHPENERVDREARRQAQSQ 149 (166)
T ss_dssp HHHHHSSHHHHHHHTTSBCTTSSBCTTHHHHHHHHHHH----TTSEEECCCCCGGGSCTHHHHHHHHHHHHHTSS
T ss_pred HHHHhhhHHHHHHhcccccccCCccCcHHHHHHHHHHH----hcCeEEEEEeeCCCCchhHHHHHHHHHHHHHHh
Confidence 999998 3221 24677777665 235899999999999999999999999999877
No 9
>2lsn_A Reverse transcriptase; RNAse H, viral protein; NMR {Simian foamy virus}
Probab=99.86 E-value=6.7e-22 Score=166.35 Aligned_cols=122 Identities=18% Similarity=0.140 Sum_probs=89.4
Q ss_pred CCcEEEEecCCCCC--CC-----cceEEe--c-C-c--eeEEeec-CCCcchHHHHHHHHHHHHHHHhhhccCcCCcceE
Q psy5302 96 VDSTVIYTDASKTD--VA-----VSSAFC--S-Q-D--IKFSTRL-HSLLSICNAELTSILFAIHFLLSSCLNEHTQACF 161 (333)
Q Consensus 96 ~~~~~iytDGS~~~--~~-----~G~g~~--~-~-~--~~~~~~l-~~~~s~~~AEl~Ai~~al~~~~~~~~~~~~~~~i 161 (333)
...++||||||+.. +. .|+|+| . + . ....+.. ....+.+.||+.|+..||+.+...... |
T Consensus 5 ~~evviYTDGsc~gNpgp~~~~~aG~Gv~~~~~~~~~~~~~~~~~~tnn~te~~Aei~Al~~al~~al~~~~~------v 78 (165)
T 2lsn_A 5 QYEGVFYTDGSAIKSPDPTKSNNAGMGIVHATYKPEYQVLNQWSIPLGNHTAQMAEIAAVEFACKKALKIPGP------V 78 (165)
T ss_dssp CCSEEEEEEEEEEECSSCTTCEEEEEEEEEECCSSSCCEEEEEEEEESSCCHHHHHHHHHHHHHHHHHHSSSC------E
T ss_pred CceEEEEEcCCCCCCCCCCCCCcEEEEEEEEECCCccEEeccccCCchHHHHHHHHHHHHHHHHHHHhcCCCe------E
Confidence 45689999999753 32 788887 2 2 1 2223332 245678889999998888887664433 9
Q ss_pred EEEeCcHHHHHHHcCC---------CC-------CchHHHHHHHHHHhhcCCCceEEEEecCCCCC------ccchhhhH
Q psy5302 162 VICSDSLSALQTLQNV---------FS-------LNPIASEIRNLILENKSKLSIRFIWVPSHVGI------AGNEEADR 219 (333)
Q Consensus 162 ~I~sDs~~~~~~l~~~---------~~-------~~~~~~~i~~~~~~~~~~~~v~~~wVp~H~g~------~gNe~AD~ 219 (333)
.|+|||++|+++|..| .. ..++++++.+++ .....|.|.|||||+|+ +|||+||+
T Consensus 79 ~I~TDS~Yvi~~it~w~~~Wk~ngw~~~~~~pVkN~dL~~~l~~~~---~~~~~v~~~~VkgH~g~~~~~~~~gNe~AD~ 155 (165)
T 2lsn_A 79 LVITDSFYVAESANKELPYWKSNGFVNNKKKPLKHISKWKSIAECL---SMKPDITIQHEKGHQPTNTSIHTEGNALADK 155 (165)
T ss_dssp EEEESCHHHHHHHHTHHHHHHHTTSCSCSSSCCSSHHHHHHHHHHH---HHCTTCEEEECCSSSCSSSCHHHHHHHHHHH
T ss_pred EEEeChHHHHhhhhhhhhhheeccccccCCCcccCHHHHHHHHHHH---hCCCCEEEEEEeCCCCccCCCCChHHHHHHH
Confidence 9999999999999753 11 124677777766 33457999999999995 58999999
Q ss_pred HHHHHhc
Q psy5302 220 LAKEALT 226 (333)
Q Consensus 220 lAk~a~~ 226 (333)
||++|+.
T Consensus 156 LA~~gA~ 162 (165)
T 2lsn_A 156 LATQGSY 162 (165)
T ss_dssp HHHHHHH
T ss_pred HHHHhhh
Confidence 9999985
No 10
>3hst_B Protein RV2228C/MT2287; ribonuclease H1, RV2228C N-terminal domain, fusion protein, maltose binding protein, HYDR; HET: MLR TAR; 2.25A {Mycobacterium tuberculosis}
Probab=99.80 E-value=3.8e-19 Score=145.79 Aligned_cols=121 Identities=17% Similarity=0.160 Sum_probs=90.2
Q ss_pred cEEEEecCCCCC--CCcceEEe--c---Cce--eEEeecCCCcchHHHHHHHHHHHHHHHhhhccCcCCcceEEEEeCcH
Q psy5302 98 STVIYTDASKTD--VAVSSAFC--S---QDI--KFSTRLHSLLSICNAELTSILFAIHFLLSSCLNEHTQACFVICSDSL 168 (333)
Q Consensus 98 ~~~iytDGS~~~--~~~G~g~~--~---~~~--~~~~~l~~~~s~~~AEl~Ai~~al~~~~~~~~~~~~~~~i~I~sDs~ 168 (333)
.++||||||+.. +.+|+|++ + +.. ..+..+ ..+|++.||+.|++.||+.+...+.. + |.|+|||+
T Consensus 3 ~~~iy~DGs~~~~~g~~g~G~v~~~~~~~~~~~~~~~~~-~~~tn~~aEl~A~~~aL~~a~~~~~~---~--v~i~tDS~ 76 (141)
T 3hst_B 3 KVVIEADGGSRGNPGPAGYGAVVWTADHSTVLAESKQAI-GRATNNVAEYRGLIAGLDDAVKLGAT---E--AAVLMDSK 76 (141)
T ss_dssp EEEEEEEEEESSSSEEEEEEEEEEETTSCSEEEEEEEEE-EEECHHHHHHHHHHHHHHHHHHHTCS---E--EEEEESCH
T ss_pred EEEEEEecCCCCCCCCcEEEEEEEeCCCCcEEEeeeccC-CCCchHHHHHHHHHHHHHHHHHCCCc---e--EEEEeChH
Confidence 589999999764 35788877 3 222 223333 36899999999999999999887654 4 99999999
Q ss_pred HHHHHHcCC-CCCchHHHHHHHHHH-hhcCCCceEEEEecCCCCCccchhhhHHHHHHhcCC
Q psy5302 169 SALQTLQNV-FSLNPIASEIRNLIL-ENKSKLSIRFIWVPSHVGIAGNEEADRLAKEALTST 228 (333)
Q Consensus 169 ~~~~~l~~~-~~~~~~~~~i~~~~~-~~~~~~~v~~~wVp~H~g~~gNe~AD~lAk~a~~~~ 228 (333)
++++.+++. ...+..+..+.+.+. .......|.|.||| .++|+.||+|||+|+...
T Consensus 77 ~vv~~i~~~~~~~~~~l~~~~~~i~~l~~~~~~v~~~~V~----~~~N~~AD~LA~~a~~~~ 134 (141)
T 3hst_B 77 LVVEQMSGRWKVKHPDLLKLYVQAQALASQFRRINYEWVP----RARNTYADRLANDAMDAA 134 (141)
T ss_dssp HHHHHHTTSSCCCSHHHHHHHHHHHHHHTTSSEEEEEECC----GGGCHHHHHHHHHHHHHH
T ss_pred HHHHHHhCCcccCCHHHHHHHHHHHHHHhcCCeEEEEEcC----CcccHHHHHHHHHHHHHh
Confidence 999999984 344443333332222 23556899999999 499999999999998654
No 11
>3u3g_D Ribonuclease H, RNAse H1; hydrolase, cleave the RNA strand of RNA/DNA hybrid; 1.40A {Uncultured organism}
Probab=99.80 E-value=3e-19 Score=145.94 Aligned_cols=122 Identities=18% Similarity=0.201 Sum_probs=88.8
Q ss_pred CcEEEEecCCCCC--CCcceEEe--c--Cce--eEEeecCCCcchHHHHHHHHHHHHHHHhhhccCcCCcceEEEEeCcH
Q psy5302 97 DSTVIYTDASKTD--VAVSSAFC--S--QDI--KFSTRLHSLLSICNAELTSILFAIHFLLSSCLNEHTQACFVICSDSL 168 (333)
Q Consensus 97 ~~~~iytDGS~~~--~~~G~g~~--~--~~~--~~~~~l~~~~s~~~AEl~Ai~~al~~~~~~~~~~~~~~~i~I~sDs~ 168 (333)
..+.||||||+.. +.+|+|++ + +.. ..+..++ .+|++.||+.|++.||+.+...+.... ...|.|+|||+
T Consensus 2 ~~~~iy~DGs~~~n~g~~G~G~v~~~~~g~~~~~~~~~~~-~~tn~~aEl~A~~~aL~~a~~~~~~~~-~~~v~i~tDS~ 79 (140)
T 3u3g_D 2 NKIIIYTDGGARGNPGPAGIGVVITDEKGNTLHESSAYIG-ETTNNVAEYEALIRALEDLQMFGDKLV-DMEVEVRMDSE 79 (140)
T ss_dssp CEEEEEEEEEESSTTEEEEEEEEEECTTSCEEEEEEEEEE-EECHHHHHHHHHHHHHHHHGGGGGGGT-TCEEEEEESCH
T ss_pred ceEEEEEecCCCCCCCCcEEEEEEEeCCCCEEEEEEeeCC-CCchHHHHHHHHHHHHHHHHHcCCCCC-CceEEEEeChH
Confidence 3589999999864 34888877 3 332 2333333 579999999999999999987543100 11499999999
Q ss_pred HHHHHHcCCCC-Cc-h---HHHHHHHH-HHhhcCCCceEEEEecCCCCCccchhhhHHHHHHhcC
Q psy5302 169 SALQTLQNVFS-LN-P---IASEIRNL-ILENKSKLSIRFIWVPSHVGIAGNEEADRLAKEALTS 227 (333)
Q Consensus 169 ~~~~~l~~~~~-~~-~---~~~~i~~~-~~~~~~~~~v~~~wVp~H~g~~gNe~AD~lAk~a~~~ 227 (333)
++++.++++.. .+ . ++.++.++ + .....|.|.||| .++|+.||+|||+|+..
T Consensus 80 ~vi~~i~~~~~~~~~~l~~~~~~i~~l~~---~~~~~v~~~~V~----~~~N~~AD~LA~~a~~~ 137 (140)
T 3u3g_D 80 LIVRQMQGVYKVKEPTLKEKFAKIAHIKM---ERVPNLVFVHIP----REKNARADELVNEAIDK 137 (140)
T ss_dssp HHHHHHTTSSCCCCGGGHHHHHHHHHHHH---HHCTTCEEEECC----GGGGHHHHHHHHHHHHH
T ss_pred HHHHHhCCCcccCCHHHHHHHHHHHHHhh---cCCCcEEEEEcC----chhhHHHHHHHHHHHHh
Confidence 99999998653 33 3 34444444 3 344589999999 59999999999999864
No 12
>1mu2_A HIV-2 RT; HIV-2 reverse transcriptase, AIDS, polymerase, drug design, transferase; 2.35A {Human immunodeficiency virus 2} SCOP: c.55.3.1 e.8.1.2 PDB: 1mu2_B
Probab=99.79 E-value=2.9e-19 Score=178.27 Aligned_cols=116 Identities=23% Similarity=0.284 Sum_probs=91.8
Q ss_pred CCcEEEEecCCCCCC--CcceEEe--cCceeEEeecCCCcchHHHHHHHHHHHHHHHhhhccCcCCcceEEEEeCcHHHH
Q psy5302 96 VDSTVIYTDASKTDV--AVSSAFC--SQDIKFSTRLHSLLSICNAELTSILFAIHFLLSSCLNEHTQACFVICSDSLSAL 171 (333)
Q Consensus 96 ~~~~~iytDGS~~~~--~~G~g~~--~~~~~~~~~l~~~~s~~~AEl~Ai~~al~~~~~~~~~~~~~~~i~I~sDs~~~~ 171 (333)
.+.++||||||+..+ ..|+|++ .++. .+..+ ..+|++.||+.|++.||+. .. ..+.|+|||++|+
T Consensus 434 ~~~~~iytDGs~~~n~g~~g~G~v~~~~~~-~~~~~-~~~TNn~aEl~A~i~aL~~----~~-----~~v~I~tDS~~v~ 502 (555)
T 1mu2_A 434 PGAETFYTDGSCNRQSKEGKAGYVTDRGKD-KVKKL-EQTTNQQAELEAFAMALTD----SG-----PKVNIIVDSQYVM 502 (555)
T ss_dssp TTCEEEEEEEEECTTTCCEEEEEEETTSCE-EEEEE-SSCCHHHHHHHHHHHHHHT----SC-----SEEEEEESCHHHH
T ss_pred CCceEEEEcccccCCCCCceEEEEEEeCCE-eeccC-CCCCHHHHHHHHHHHHHHc----CC-----CeEEEEEehHHHH
Confidence 456999999997643 3678877 3332 23333 3679999999999999998 22 2399999999999
Q ss_pred HHHcCCCC--CchHHHHHHHHHHhhcCCCceEEEEecCCCCCccchhhhHHHHHHh
Q psy5302 172 QTLQNVFS--LNPIASEIRNLILENKSKLSIRFIWVPSHVGIAGNEEADRLAKEAL 225 (333)
Q Consensus 172 ~~l~~~~~--~~~~~~~i~~~~~~~~~~~~v~~~wVp~H~g~~gNe~AD~lAk~a~ 225 (333)
+.+++|.. +.++++++.+++ .....|.|.|||||+|++|||.||+||++|+
T Consensus 503 ~~i~~~~~~~~~~l~~~~~~~~---~~~~~v~~~wV~~H~g~~~Ne~AD~LA~~a~ 555 (555)
T 1mu2_A 503 GIVASQPTESESKIVNQIIEEM---IKKEAIYVAWVPAHKGIGGNQEVDHLVSQGI 555 (555)
T ss_dssp HHHHTCCSEESCHHHHHHHHHH---HHCSEEEEEECCSSSCCTTHHHHHHHHHTTC
T ss_pred HHHhcccccccHHHHHHHHHHh---ccCCcEEEEEEECCCCChhHHHHHHHHHhhC
Confidence 99999864 446777777765 2357899999999999999999999999885
No 13
>2zd1_A Reverse transcriptase/ribonuclease H; P51/P66, hetero dimer, NNRTI, nonnucleoside inhibitor, AIDS, HIV, rilpivirine, diarylpyrimidine, DAPY, DNA recombination; HET: T27; 1.80A {Human immunodeficiency virus 1} PDB: 3is9_A* 3irx_A* 2ze2_A* 3bgr_A* 3qlh_A* 3klf_A* 3qo9_A* 1dlo_A 1bqm_A 2be2_A* 1s6q_A* 1s6p_A* 1s9g_A* 1suq_A* 2b5j_A* 2b6a_A* 2ban_A* 1s9e_A* 1hni_A* 1hnv_A* ...
Probab=99.79 E-value=2e-19 Score=179.44 Aligned_cols=116 Identities=23% Similarity=0.330 Sum_probs=88.5
Q ss_pred CCcEEEEecCCCCC--CCcceEEe-cCceeEEeecCCCcchHHHHHHHHHHHHHHHhhhccCcCCcceEEEEeCcHHHHH
Q psy5302 96 VDSTVIYTDASKTD--VAVSSAFC-SQDIKFSTRLHSLLSICNAELTSILFAIHFLLSSCLNEHTQACFVICSDSLSALQ 172 (333)
Q Consensus 96 ~~~~~iytDGS~~~--~~~G~g~~-~~~~~~~~~l~~~~s~~~AEl~Ai~~al~~~~~~~~~~~~~~~i~I~sDs~~~~~ 172 (333)
.+.++||||||+.. +..|+|++ ..+....... ..+|++.||+.|++.||+.+ .. . +.|+|||++|++
T Consensus 437 ~~~~~iytDGs~~~n~g~~g~g~v~~~~~~~~~~~-~~~TNn~aEl~Ai~~aL~~~----~~---~--v~I~tDS~~vi~ 506 (557)
T 2zd1_A 437 VGAETFYVDGAANRETKLGKAGYVTNKGRQKVVPL-TNTTNQKTELQAIYLALQDS----GL---E--VNIVTDSQYALG 506 (557)
T ss_dssp TTSCEEEEEEEECTTTCCEEEEEEETTSCEEEEEE-CSCCHHHHHHHHHHHHHHHS----CS---E--EEEEECCHHHHH
T ss_pred CCCEEEEEccCCCCCCCceEEEEEEECCcEEEecC-CCCCHHHHHHHHHHHHHHhC----CC---c--EEEEeChHHHHH
Confidence 45699999999753 33677877 3222222233 46899999999999999998 22 3 999999999999
Q ss_pred HHcCCCCC--chHHHHHHHHHHhhcCCCceEEEEecCCCCCccchhhhHHHHHH
Q psy5302 173 TLQNVFSL--NPIASEIRNLILENKSKLSIRFIWVPSHVGIAGNEEADRLAKEA 224 (333)
Q Consensus 173 ~l~~~~~~--~~~~~~i~~~~~~~~~~~~v~~~wVp~H~g~~gNe~AD~lAk~a 224 (333)
.+.+|... .+++.++.+.+ .....|.|.|||||+|++|||.||+||++|
T Consensus 507 ~i~~~~~~~~~~l~~~~~~~l---~~~~~v~~~wV~~H~g~~~Ne~AD~LA~~a 557 (557)
T 2zd1_A 507 IIQAQPDKSESELVNQIIEQL---IKKEKVYLAWVPAHKGIGGNEQVDKLVSAG 557 (557)
T ss_dssp HHTTCCSEESSHHHHHHHHHH---HHCSEEEEEECCSSSCCTTCCGGGGCC---
T ss_pred HHhcCCccCCHHHHHHHHHHH---hcCCCEEEEEcCCCCCChhHHHHHHHHhcC
Confidence 99998764 46777776655 224589999999999999999999999986
No 14
>2ehg_A Ribonuclease HI; RNAse HI, hyperthermophilic archaeon, D stranded RNA-dependent RNAse, hydrolase; 1.60A {Sulfolobus tokodaii} PDB: 3aly_A
Probab=99.77 E-value=7.9e-19 Score=145.53 Aligned_cols=117 Identities=19% Similarity=0.234 Sum_probs=88.6
Q ss_pred EEEEecCCCC---CCCcce-EEe--c-CceeE--EeecC---CCcchHHHHHHHHHHHHHHHhhhccCcCCcceEEEEeC
Q psy5302 99 TVIYTDASKT---DVAVSS-AFC--S-QDIKF--STRLH---SLLSICNAELTSILFAIHFLLSSCLNEHTQACFVICSD 166 (333)
Q Consensus 99 ~~iytDGS~~---~~~~G~-g~~--~-~~~~~--~~~l~---~~~s~~~AEl~Ai~~al~~~~~~~~~~~~~~~i~I~sD 166 (333)
+.||||||+. ++.+|+ |++ + +.... +..++ ...|++.||+.|++.||+.+...+.. + |.|+||
T Consensus 2 ~~iy~DGs~~~~n~g~~G~~G~vi~~~g~~~~~~~~~~~~~~~~~tnn~aEl~A~~~aL~~a~~~g~~---~--v~i~tD 76 (149)
T 2ehg_A 2 IIGYFDGLCEPKNPGGIATFGFVIYLDNRKIEGYGLAEKPFSINSTNNVAEYSGLICLMETMLRLGIS---S--PIIKGD 76 (149)
T ss_dssp CEEEEEEEEESSSSSSEEEEEEEEECSSCEEEEEEECSCTTCTTCCHHHHHHHHHHHHHHHHHHHTCC---S--CEEEES
T ss_pred EEEEEeeccCCCCCChheEEEEEEEECCEEEEEeccccCCCCCCccHHHHHHHHHHHHHHHHHHcCCC---E--EEEEeC
Confidence 6899999986 245775 866 3 33322 22222 37899999999999999999887654 4 999999
Q ss_pred cHHHHHHHcCCCC-Cc----hHHHHHHHHHHhhcCCCceEEEEecCCCCCccchhhhHHHHHHhcCC
Q psy5302 167 SLSALQTLQNVFS-LN----PIASEIRNLILENKSKLSIRFIWVPSHVGIAGNEEADRLAKEALTST 228 (333)
Q Consensus 167 s~~~~~~l~~~~~-~~----~~~~~i~~~~~~~~~~~~v~~~wVp~H~g~~gNe~AD~lAk~a~~~~ 228 (333)
|+++++.++++.. .+ ++++++..++... .|.|.|||+ ++|+.||+||++|+...
T Consensus 77 S~~vi~~i~~~w~~~~~~~~~l~~~i~~l~~~~----~v~~~~V~~----~~N~~AD~LA~~a~~~~ 135 (149)
T 2ehg_A 77 SQLVIKQMNGEYKVKAKRIIPLYEKAIELKKKL----NATLIWVPR----EENKEADRLSRVAYELV 135 (149)
T ss_dssp CHHHHHHHTTSSCCCCTTHHHHHHHHHHHHHHH----TCEEEECCG----GGCHHHHHHHHHHHHHH
T ss_pred hHHHHHHHhCccccCCHHHHHHHHHHHHHHhcC----CEEEEEcCC----cccHHHHHHHHHHHHhh
Confidence 9999999999743 22 3556666555222 599999997 69999999999998765
No 15
>1zbf_A Ribonuclease H-related protein; RNAse H, RNA/DNA hybrid, DDE motif, hydrolase; 1.50A {Bacillus halodurans} SCOP: c.55.3.1 PDB: 1zbi_A 2g8u_A 2g8i_A 2g8h_A 2g8k_A 2g8f_A 2g8v_A 2g8w_A 3ey1_A* 1zbl_A 3d0p_A* 3i8d_A* 2r7y_A*
Probab=99.34 E-value=3.2e-13 Score=110.43 Aligned_cols=118 Identities=11% Similarity=-0.010 Sum_probs=82.2
Q ss_pred CCCCcEEEEecCCCCC--CCcceEEe---cCcee-EEeecCCCcchHHHHHHHHHHHHHHHhhhccCcCCcceEEEEeCc
Q psy5302 94 VPVDSTVIYTDASKTD--VAVSSAFC---SQDIK-FSTRLHSLLSICNAELTSILFAIHFLLSSCLNEHTQACFVICSDS 167 (333)
Q Consensus 94 ~~~~~~~iytDGS~~~--~~~G~g~~---~~~~~-~~~~l~~~~s~~~AEl~Ai~~al~~~~~~~~~~~~~~~i~I~sDs 167 (333)
.....+.||||||+.. +.+|+|+| ++... .+..++ ..|++.||+.|++.||+.+.+.... |.|+|||
T Consensus 7 ~~~~~~~iy~DGa~~gNpG~~G~G~vl~~~g~~~~~~~~~~-~~TNN~aEl~A~i~aL~~~~~~~~~------v~i~tDS 79 (142)
T 1zbf_A 7 EEIIWESLSVDVGSQGNPGIVEYKGVDTKTGEVLFEREPIP-IGTNNMGEFLAIVHGLRYLKERNSR------KPIYSNS 79 (142)
T ss_dssp -CCCSSSEEEEEEECSSSEEEEEEEEETTTCCEEEECCCEE-EECHHHHHHHHHHHHHHHHHHTTCC------CCEEESC
T ss_pred CCCCeEEEEEeeccCCCCCCeEEEEEEEeCCEEEEEecccC-CcCcHHHHHHHHHHHHHHHHhCCCe------EEEEEeh
Confidence 3446788999999753 44788887 23322 222333 5799999999999999999875433 9999999
Q ss_pred HHHHHHHcCCCCC---------chHHHHHHHHHHhhcCCCceEEEEecCCCCCccchhhhH
Q psy5302 168 LSALQTLQNVFSL---------NPIASEIRNLILENKSKLSIRFIWVPSHVGIAGNEEADR 219 (333)
Q Consensus 168 ~~~~~~l~~~~~~---------~~~~~~i~~~~~~~~~~~~v~~~wVp~H~g~~gNe~AD~ 219 (333)
++|+..+.+...+ .++++.+..+..- .....+....|+-|++.-||..||.
T Consensus 80 ~~vi~w~~~~~~k~~~~~~v~n~dLw~~l~~~~~w-~~~~~~~~~~~kw~~~~~ge~pad~ 139 (142)
T 1zbf_A 80 QTAIKWVKDKKAKSTLVRNEETALIWKLVDEAEEW-LNTHTYETPILKWQTDKWGEIKADY 139 (142)
T ss_dssp HHHHHHHHHTCCCCCCCCSTTTHHHHHHHHHHHHH-HHHCCCCCCEEECCHHHHCSCTTCC
T ss_pred HHHHHHHHcCCccCCCCCCcccHHHHHHHHHHHHH-HhhCCCceeEEEeccCccCcCcccc
Confidence 9999988876521 1355555444321 1223455666788999999999984
No 16
>4htu_A Ribonuclease H, RNAse H; 5-chloro-2'-deoxyuridine, W-C base PAIR, wobble base PAIR, D helix; HET: DNA UCL; 1.49A {Bacillus halodurans} PDB: 3d0p_A* 4hue_A* 4huf_A* 4hug_A* 1zbf_A 1zbi_A 2g8u_A 3uld_A* 3ey1_A* 3twh_A* 2g8f_A 2g8v_A 2g8w_A 2g8i_A 2g8h_A 2g8k_A 3i8d_A* 2r7y_A* 1zbl_A
Probab=99.11 E-value=8.7e-11 Score=94.35 Aligned_cols=76 Identities=12% Similarity=0.051 Sum_probs=56.9
Q ss_pred CCcEEEEecCCCC--CCCcceEEe--c-Cce-eEEeecCCCcchHHHHHHHHHHHHHHHhhhccCcCCcceEEEEeCcHH
Q psy5302 96 VDSTVIYTDASKT--DVAVSSAFC--S-QDI-KFSTRLHSLLSICNAELTSILFAIHFLLSSCLNEHTQACFVICSDSLS 169 (333)
Q Consensus 96 ~~~~~iytDGS~~--~~~~G~g~~--~-~~~-~~~~~l~~~~s~~~AEl~Ai~~al~~~~~~~~~~~~~~~i~I~sDs~~ 169 (333)
+..+.||||||+. +|..|+|+| . +.. ..+..++ .+|++.||+.|++.||+.+.+.... +.|+|||++
T Consensus 3 p~~~~iytDGac~GNPGp~G~ggV~~~~g~~~~~~g~~~-~tTNN~aEl~A~i~aL~~l~~~~~~------v~i~tDSqy 75 (134)
T 4htu_A 3 IIWESLSVDVGSQGNPGIVEYKGVDTKTGEVLFEREPIP-IGTNNMGEFLAIVHGLRYLKERNSR------KPIYSNSQT 75 (134)
T ss_dssp CCSSSEEEEEEEETTTEEEEEEEEETTTCCEEEEEEEEE-EECHHHHHHHHHHHHHHHHHHTTCC------CCEEESCHH
T ss_pred ccceEEEEeeccCCCCCCeEEEEEEEECCEEEEEecCCC-CCchHHHHHHHHHHHHHHHHhCCCC------EEEEcchHH
Confidence 4567899999975 344788544 3 332 2333333 6899999999999999999876543 899999999
Q ss_pred HHHHHcCCC
Q psy5302 170 ALQTLQNVF 178 (333)
Q Consensus 170 ~~~~l~~~~ 178 (333)
|+..+.++.
T Consensus 76 Vi~wi~~~~ 84 (134)
T 4htu_A 76 AIKWVKDKK 84 (134)
T ss_dssp HHHHHHHTC
T ss_pred HHHHHHcCC
Confidence 999888653
No 17
>3bsu_A Ribonuclease H1, RNAse H1; RNAse H, RNA/DNA hybrid; HET: DNA 5IU; 2.10A {Homo sapiens}
Probab=90.94 E-value=0.012 Score=38.93 Aligned_cols=37 Identities=14% Similarity=-0.066 Sum_probs=33.1
Q ss_pred CCCCCCCCCCCCCCccccccccccCCCCChHHHHHHH
Q psy5302 51 PAPQTSAPWLIEPPVVDYSLRKFNKNTDPKEEINISF 87 (333)
Q Consensus 51 ~~p~~~ppW~~~~~~v~~~~~~~~k~~~~~~~a~~~~ 87 (333)
..|+++..|.+|..+|+....+.+|++.+.+||...+
T Consensus 12 ~~~GIy~sW~ec~~qV~g~~ga~yK~F~t~~eA~~~l 48 (53)
T 3bsu_A 12 RKTGVFLTWNECRAQVDRFPAARFKKFATEDEAWAFV 48 (53)
T ss_dssp SSCEEESSHHHHHHHHTTCTTCEEEEESSHHHHHHHH
T ss_pred CCCceECCHHHHHHHhcCCCCCccCCCCCHHHHHHHH
Confidence 4699999999999999999999999999999998543
No 18
>1qhk_A RNAse HI, protein (ribonuclease HI); ribonuclease HI N-terminal domain, hydrolase; NMR {Saccharomyces cerevisiae} SCOP: d.100.1.2
Probab=90.68 E-value=0.01 Score=38.21 Aligned_cols=35 Identities=14% Similarity=0.001 Sum_probs=32.1
Q ss_pred CCCCCCCCCCCCCCccccccccccCCCCChHHHHH
Q psy5302 51 PAPQTSAPWLIEPPVVDYSLRKFNKNTDPKEEINI 85 (333)
Q Consensus 51 ~~p~~~ppW~~~~~~v~~~~~~~~k~~~~~~~a~~ 85 (333)
..|+++..|.+|..+|++...+.+|++.+.+||..
T Consensus 10 ~~~GIy~sW~ec~~qV~g~~ga~yK~F~t~~eA~~ 44 (47)
T 1qhk_A 10 RETGIYNTWNECKNQVDGYGGAIYKKFNSYEQAKS 44 (47)
T ss_dssp SSCEEEEEHHHHHHHSSSCSSCCCEEESCHHHHHH
T ss_pred CCCceECCHHHHHHHhcCCCCCccCCCCCHHHHHH
Confidence 46999999999999999999999999999999984
No 19
>1rw3_A POL polyprotein; RNA and DNA dependent DNA polymerase, reverse transcriptase, transferase, replication; 3.00A {Moloney murine leukemia virus} SCOP: e.8.1.2
Probab=79.35 E-value=0.57 Score=44.78 Aligned_cols=73 Identities=10% Similarity=0.031 Sum_probs=44.6
Q ss_pred CCcEEEEecCCCCCCCcceEEe-c---Cce----eEEeecC---CCcchHHHHHHHHHHHHHHHhhhccCcCCcceEEEE
Q psy5302 96 VDSTVIYTDASKTDVAVSSAFC-S---QDI----KFSTRLH---SLLSICNAELTSILFAIHFLLSSCLNEHTQACFVIC 164 (333)
Q Consensus 96 ~~~~~iytDGS~~~~~~G~g~~-~---~~~----~~~~~l~---~~~s~~~AEl~Ai~~al~~~~~~~~~~~~~~~i~I~ 164 (333)
...+.+|||+|.. ++|+ ++ . +.. ..+..+. ..-+++..|+.||..|++.....-.. ..+.|+
T Consensus 344 ~~~~~l~~DAS~~--~~ga-vL~q~~~~~~~~i~y~Sk~l~~~e~~ys~~ekEllAi~~a~~~~~~yl~g----~~~~v~ 416 (455)
T 1rw3_A 344 TKPFELFVDEKQG--YAKG-VLTQKLGPWRRPVAYLSKKLDPVAAGWPPCLRMVAAIAVLTKDAGKLTMG----QPLVIK 416 (455)
T ss_dssp CCTTSCEEEEEEC--SSSB-EECCBCTTTTCCCCCCCBCSCSSCSSSCCSSHHHHHHHHHHHHHHGGGCS----SCEEEE
T ss_pred CCcEEEEEeccCC--ccee-EEEEecCCcEEEEEEEcccCCccccccchHHHHHHHHHHHHHHHHHHcCC----CcEEEE
Confidence 3457899999843 3332 33 2 111 1233332 23456689999999999998773222 239999
Q ss_pred eCcHHHHHHHcC
Q psy5302 165 SDSLSALQTLQN 176 (333)
Q Consensus 165 sDs~~~~~~l~~ 176 (333)
||+. ++.-+.+
T Consensus 417 tDh~-~~~~l~~ 427 (455)
T 1rw3_A 417 APHA-VEALVKQ 427 (455)
T ss_dssp CSSC-TTTTSSS
T ss_pred ecCh-HHHHhCC
Confidence 9996 5544444
No 20
>2zd1_B P51 RT; P51/P66, hetero dimer, NNRTI, nonnucleoside inhibitor, AIDS, HIV, rilpivirine, diarylpyrimidine, DAPY, DNA recombination; HET: T27; 1.80A {Human immunodeficiency virus 1} SCOP: e.8.1.2 PDB: 2ykm_B* 2ykn_B* 2ze2_B* 3bgr_B* 3ig1_B* 3irx_B* 3is9_B* 3qo9_B* 3v4i_B* 3v6d_B* 3v81_B* 3klf_B* 3kk1_B* 3kjv_B* 3kk2_B* 3kk3_B* 2be2_B* 1n5y_B* 1bqm_B* 1n6q_B* ...
Probab=66.96 E-value=14 Score=34.82 Aligned_cols=91 Identities=5% Similarity=-0.104 Sum_probs=50.8
Q ss_pred HHHHHHHHHHHh----------hCCCCcEEEEecCCCCCCCcceEEe--cC--ceeEEeecC--CCcchHHHHHHH-HHH
Q psy5302 81 EEINISFQELLQ----------QVPVDSTVIYTDASKTDVAVSSAFC--SQ--DIKFSTRLH--SLLSICNAELTS-ILF 143 (333)
Q Consensus 81 ~~a~~~~~~~~~----------~~~~~~~~iytDGS~~~~~~G~g~~--~~--~~~~~~~l~--~~~s~~~AEl~A-i~~ 143 (333)
+++..+|.++-+ -.+...+.++||+|.. + ++|++ ++ ....+.++. ..-..+.-|++| ++.
T Consensus 297 ~~~~~af~~lK~~L~~~p~l~~pd~~~~~~l~~das~~--g-~~g~vl~q~~~~~~~s~~~~~~~~y~~~~~e~la~vv~ 373 (428)
T 2zd1_B 297 EEAELELAENREILKEPVHGVYYDPSKDLIAEIQKQGQ--G-QWTYQIYQEPFKNLKTGKYARMRGAHTNDVKQLTEAVQ 373 (428)
T ss_dssp HHHHHHHHHHHHHTTSCCTTCCCCTTSCCEEEEEEEET--T-EEEEEEESSTTCEEEEEEEECCSSCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcchhccccCCCCCEEEEEecCCC--C-cEEEEEecCCCceeeecccchhhhcccchHHHHHHHHH
Confidence 456667776521 2334568999999943 1 23444 22 223333332 233344667777 999
Q ss_pred HHHHHhh-hccCcCCcceEEEEeCcHHHHHHHcC
Q psy5302 144 AIHFLLS-SCLNEHTQACFVICSDSLSALQTLQN 176 (333)
Q Consensus 144 al~~~~~-~~~~~~~~~~i~I~sDs~~~~~~l~~ 176 (333)
||+.... +-++. ...++++||.+....-...
T Consensus 374 al~~~r~yl~G~~--~~~~i~~td~~~~~~~~~~ 405 (428)
T 2zd1_B 374 KITTESIVIWGKT--PKFKLPIQKETWETWWTEY 405 (428)
T ss_dssp HHHHHHHHHHSSC--CEEEESSCHHHHHHHHHHH
T ss_pred HhhccceEEECCC--CcEECCccHHHHHHHHHhc
Confidence 9987665 22211 1237889999865544433
No 21
>3alr_A Nanos protein; zinc-finger, translational repression, RNA, 3'-UTR, metal BI protein; 2.10A {Danio rerio}
Probab=26.97 E-value=32 Score=25.49 Aligned_cols=23 Identities=17% Similarity=0.056 Sum_probs=20.3
Q ss_pred CCCCCCCCccccceeccccCCCC
Q psy5302 310 PICVPCGCVMSVKHIHINRLPNL 332 (333)
Q Consensus 310 ~~C~~Cg~~et~~H~l~~Cp~~~ 332 (333)
-.|+.||+..+-.|.+-.||.+.
T Consensus 72 Y~CpiCGATGd~AHT~kYCP~~~ 94 (106)
T 3alr_A 72 YKCPLCGATGAKAHTKRFCPMVD 94 (106)
T ss_dssp CCCTTTCCCGGGCCCGGGCTTCG
T ss_pred ccCCCCCCcCCcccceecCCCCC
Confidence 47999999999999999999763
No 22
>2zd1_A Reverse transcriptase/ribonuclease H; P51/P66, hetero dimer, NNRTI, nonnucleoside inhibitor, AIDS, HIV, rilpivirine, diarylpyrimidine, DAPY, DNA recombination; HET: T27; 1.80A {Human immunodeficiency virus 1} PDB: 3is9_A* 3irx_A* 2ze2_A* 3bgr_A* 3qlh_A* 3klf_A* 3qo9_A* 1dlo_A 1bqm_A 2be2_A* 1s6q_A* 1s6p_A* 1s9g_A* 1suq_A* 2b5j_A* 2b6a_A* 2ban_A* 1s9e_A* 1hni_A* 1hnv_A* ...
Probab=24.84 E-value=2.4e+02 Score=27.05 Aligned_cols=90 Identities=7% Similarity=-0.137 Sum_probs=49.5
Q ss_pred HHHHHHHHHHHh----------hCCCCcEEEEecCCCCCCCcc-eEEe--c-Cc-ee--EEeecCCCcchHHHHHHH-HH
Q psy5302 81 EEINISFQELLQ----------QVPVDSTVIYTDASKTDVAVS-SAFC--S-QD-IK--FSTRLHSLLSICNAELTS-IL 142 (333)
Q Consensus 81 ~~a~~~~~~~~~----------~~~~~~~~iytDGS~~~~~~G-~g~~--~-~~-~~--~~~~l~~~~s~~~AEl~A-i~ 142 (333)
+++.+.|.++-. ..+...+.+|||+|.. | +|++ + +. .. ..+........+.-|++| ++
T Consensus 299 ~~~~~af~~lK~~L~~~p~L~~pd~~~~~~l~~das~~----g~~g~vl~q~~~~~~~~~~~~~~~~y~~~e~e~la~vv 374 (557)
T 2zd1_A 299 EEAELELAENREILKEPVHGVYYDPSKDLIAEIQKQGQ----GQWTYQIYQEPFKNLKTGKYARMRGAHTNDVKQLTEAV 374 (557)
T ss_dssp HHHHHHHHHHHHHTSSCCCBCCCCTTSCCEEEEEEEET----TEEEEEEEEETTEEEEEEEEECCSCSEECHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCccceeecCCCCCEEEEEecCCC----CcEEEEEecCCCceeeeeecccccccCCChHHHHHHHH
Confidence 456667776532 1234568899999853 3 2444 3 22 22 223223334455778888 88
Q ss_pred HHHHHHhh-hccCcCCcceEEE-EeCcHHHHHHHcCC
Q psy5302 143 FAIHFLLS-SCLNEHTQACFVI-CSDSLSALQTLQNV 177 (333)
Q Consensus 143 ~al~~~~~-~~~~~~~~~~i~I-~sDs~~~~~~l~~~ 177 (333)
.+|+.... .-++ .-.+.+ ++|++.+.+-...|
T Consensus 375 ~~l~~~~~~l~g~---~p~~~vp~~~~~~~~~~~~~~ 408 (557)
T 2zd1_A 375 QKITTESIVIWGK---TPKFKLPIQKETWETWWTEYW 408 (557)
T ss_dssp HHHHHHHHHHHSS---CCEEEESBCHHHHHHHHHHCS
T ss_pred HHhhhhheEEeCC---CCCEECCCcHHHHHHHhhhch
Confidence 88876544 2221 112556 78988655554443
No 23
>2z3g_A Blasticidin-S deaminase; hydrolase, cytidine deaminase family, zinc, tetramer; HET: TRE; 1.50A {Aspergillus terreus} SCOP: c.97.1.1 PDB: 1wn6_A* 1wn5_A* 2z3h_A* 2z3j_A 2z3i_A*
Probab=21.97 E-value=97 Score=23.76 Aligned_cols=51 Identities=22% Similarity=0.129 Sum_probs=29.8
Q ss_pred CcceEEe--cCceeEEeecCCCcchHHHHHHHHHHHHHHHhhhccCcCCcceEEEEeCc
Q psy5302 111 AVSSAFC--SQDIKFSTRLHSLLSICNAELTSILFAIHFLLSSCLNEHTQACFVICSDS 167 (333)
Q Consensus 111 ~~G~g~~--~~~~~~~~~l~~~~s~~~AEl~Ai~~al~~~~~~~~~~~~~~~i~I~sDs 167 (333)
.+|++++ +|.+.............-||..||..|+.. -.... ..+.+++|.
T Consensus 28 ~VGAal~~~dG~i~~G~NvE~~~~t~cAE~~Ai~~A~~~-G~~~~-----~~i~vv~~~ 80 (130)
T 2z3g_A 28 SVASAALSSDGRIFTGVNVYHFTGGPCAELVVLGTAAAA-AAGNL-----TCIVAIGNE 80 (130)
T ss_dssp CEEEEEEETTSCEEEEECCCCTTTCCCHHHHHHHHHHHT-TCCCE-----EEEEEEETT
T ss_pred CEEEEEEecCCeEEEEeccccCCcccCHHHHHHHHHHHc-CCCce-----EEEEEEECC
Confidence 4788877 455443333332233457999999998864 11122 237888874
Done!