RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy5302
(333 letters)
>2kq2_A Ribonuclease H-related protein; PSI, NESG, protein structure, APO
enzyme, structural genomics, protein structure
initiative; NMR {Desulfitobacterium hafniense dcb-2}
PDB: 2kw4_A
Length = 147
Score = 56.6 bits (137), Expect = 4e-10
Identities = 17/91 (18%), Positives = 28/91 (30%), Gaps = 9/91 (9%)
Query: 136 AELTSILFAIHFLLSSCLNEHTQACFVICSDSLSALQTLQNVFSLN-PIASEIRNLILEN 194
E+ + L+A+ + I D + L+ N
Sbjct: 53 GEIAAALYAVKKASQLGVK------IRILHDYAGIAFWATGEWKAKNEFTQAYAKLM--N 104
Query: 195 KSKLSIRFIWVPSHVGIAGNEEADRLAKEAL 225
+ + F V +H G N+ D AK AL
Sbjct: 105 QYRGIYSFEKVKAHSGNEFNDYVDMKAKSAL 135
>3p1g_A Xenotropic murine leukemia virus-related virus (X H domain; XMRV,
RNAse H, reverse transcriptase, transcription; 1.50A
{Xenotropic mulv-related virus} PDB: 3v1q_A 3v1o_A
3v1r_A* 2hb5_A
Length = 165
Score = 55.6 bits (134), Expect = 1e-09
Identities = 22/95 (23%), Positives = 33/95 (34%), Gaps = 11/95 (11%)
Query: 136 AELTSILFAIHFLLSSCLNEHTQACFVICSDSLSALQTLQNVFSLNPIASEIRNLILENK 195
AEL ++ A+ LN +T S A + + +EI L+
Sbjct: 66 AELIALTQALKMAEGKKLNVYT------DSRYAFATAHVHSEGREIKNKNEILALLKALF 119
Query: 196 SKLSIRFIWVPSHVG-----IAGNEEADRLAKEAL 225
+ I P H GN AD+ A+EA
Sbjct: 120 LPKRLSIIHCPGHQKGNSAEARGNRMADQAAREAA 154
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 55.8 bits (134), Expect = 1e-08
Identities = 63/381 (16%), Positives = 116/381 (30%), Gaps = 124/381 (32%)
Query: 16 LQQLYERKSSFEKPLRIR--GKLLLE---------KYGIEYLDFLSPAPQTSAPWLIEP- 63
L+ LY+ L I+ + L E K + L+ L WL P
Sbjct: 173 LRDLYQTYHVLVGDL-IKFSAETLSELIRTTLDAEKVFTQGLNILE--------WLENPS 223
Query: 64 --PVVDYSLRKFNKNTDPKEEINISFQ--ELLQ--QVPVDSTVI-YTDASKTDVAVSSAF 116
P DY L + P IS ++Q V + ++ +T +
Sbjct: 224 NTPDKDYLL------SIP-----ISCPLIGVIQLAHYVVTAKLLGFTPGELRSYLKGATG 272
Query: 117 CSQDIKFSTRLHSLLSICNAE-------LTSILFAIHFLLSSCLNEHTQACFVICSDSLS 169
SQ + + ++ AE S+ AI L + + S S
Sbjct: 273 HSQGL--------VTAVAIAETDSWESFFVSVRKAITVLFFIGV--RCYEAYPNTSLPPS 322
Query: 170 ALQ-TLQN----------VFSLNP--IASEIR--NLILENKSKLSIRFIWVPSHVGIAGN 214
L+ +L+N + +L + + N L ++ I + ++ ++G
Sbjct: 323 ILEDSLENNEGVPSPMLSISNLTQEQVQDYVNKTNSHLPAGKQVEISLVNGAKNLVVSGP 382
Query: 215 EEA-----DRLAKEALTSTHPTINKIPIPDYKAYSKRKILTSW---------NSEWHNLQ 260
++ L K + ++IP +S+RK+ S +S L
Sbjct: 383 PQSLYGLNLTLRKAK-APSGLDQSRIP------FSERKLKFSNRFLPVASPFHSHL--LV 433
Query: 261 NNK---LHEIKVENKPWNPPYLINRKEQVSLTR----LRIGHTNTTHIHLMKKENPPICV 313
++ N +N + + V T LR+ + + V
Sbjct: 434 PASDLINKDLVKNNVSFNAKDI---QIPVYDTFDGSDLRVLSGSISERI----------V 480
Query: 314 PCGCVMSVK----------HI 324
C + VK HI
Sbjct: 481 DCIIRLPVKWETTTQFKATHI 501
Score = 40.0 bits (93), Expect = 0.001
Identities = 45/269 (16%), Positives = 87/269 (32%), Gaps = 81/269 (30%)
Query: 80 KEEINISFQELLQQVPVDSTVIYTDAS--KTDVAVSSAFCSQDIKFSTRLHSLLSICNAE 137
K+ S +++ PV+ T+ + + S+ + + + N
Sbjct: 1654 KDTYGFSILDIVINNPVNLTIHFGGEKGKRIRENYSAMIFETIVDGKLKTEKIFKEINEH 1713
Query: 138 LTSILF---------------AIHFLLSSCLNEHTQACFVICSD------SL---SALQT 173
TS F A+ L+ E ++ +I +D SL +AL +
Sbjct: 1714 STSYTFRSEKGLLSATQFTQPAL-TLMEKAAFEDLKSKGLIPADATFAGHSLGEYAALAS 1772
Query: 174 LQNVFSLNPIAS--EIRNLILEN--------KSKLSIRFIWVPSHVGIAGNEEADRLAKE 223
L +V S+ + R + ++ +S + I P V + ++EA + E
Sbjct: 1773 LADVMSIESLVEVVFYRGMTMQVAVPRDELGRSNYGMIAI-NPGRVAASFSQEALQYVVE 1831
Query: 224 ALTSTHPTI----NKIPIPDYKAYSKRKILTSWNSEWHNLQ-------------NNKLHE 266
+ + N Y N E N Q N L+
Sbjct: 1832 RVGKRTGWLVEIVN------Y------------NVE--NQQYVAAGDLRALDTVTNVLNF 1871
Query: 267 IKVENKPWNPPYLINRKEQVSLTRLRIGH 295
IK++ +I ++ +SL + GH
Sbjct: 1872 IKLQKID-----IIELQKSLSLEEVE-GH 1894
Score = 35.0 bits (80), Expect = 0.041
Identities = 38/204 (18%), Positives = 66/204 (32%), Gaps = 66/204 (32%)
Query: 50 SPAPQTSAPWLIEPPVVDYSLRKFNKNTDPKEEINIS-------------------FQEL 90
P+P S L + V DY + K N + +++ IS
Sbjct: 334 VPSPMLSISNLTQEQVQDY-VNKTNSHLPAGKQVEISLVNGAKNLVVSGPPQSLYGLNLT 392
Query: 91 LQQVPVDSTVIYTDASKTDVAVSSAFCSQDIKFSTR-L------HS-LLSICNAELTSIL 142
L++ S D S+ F + +KFS R L HS LL + + L
Sbjct: 393 LRKAKAPSG---LDQSRI------PFSERKLKFSNRFLPVASPFHSHLLVPASDLINKDL 443
Query: 143 FAIHFLLSSC-LNEHTQACFVICSDSLSALQTLQNVFSLNPIASEIRNLILENKSKLSIR 201
+ ++ + V + S L+ L I+ I + I+ L ++
Sbjct: 444 VKNNVSFNAKDI-----QIPVYDTFDGSDLRVLS-----GSISERIVDCIIR----LPVK 489
Query: 202 FIWV------PSHV------GIAG 213
W +H+ G +G
Sbjct: 490 --WETTTQFKATHILDFGPGGASG 511
Score = 31.9 bits (72), Expect = 0.37
Identities = 21/133 (15%), Positives = 42/133 (31%), Gaps = 31/133 (23%)
Query: 155 EHTQACFVICSDSLSALQTLQNVFSLN-PIASEIRNLILENKSK--LSIRFIWVPSHVGI 211
EH ++ + S LQ F+ P +E E + L +F+ +V
Sbjct: 17 EHV---LLVPTASFFIASQLQEQFNKILPEPTEGFAADDEPTTPAELVGKFL---GYV-- 68
Query: 212 AGNEEADRLAKEALTSTHPTINKIPIPDYKAYSKRKILTSWNSEWHNLQNNKLHEIKVEN 271
+ + + + LT + + + L+ N +H + +
Sbjct: 69 -----SSLVEPSKVGQFDQVL-------------NLCLTEFENCY--LEGNDIHALAAKL 108
Query: 272 KPWNPPYLINRKE 284
N L+ KE
Sbjct: 109 LQENDTTLVKTKE 121
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 53.7 bits (128), Expect = 4e-08
Identities = 48/321 (14%), Positives = 108/321 (33%), Gaps = 75/321 (23%)
Query: 6 FLSSLLTDHSLQQLYERKSSFEKPLRIRGKLLLEKYGIEYLDFLSPAPQTSAPWLIEP-- 63
S+L+ + + K + LR+ LL ++ + F+ + + +L+ P
Sbjct: 41 MPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEM-VQKFVEEVLRINYKFLMSPIK 99
Query: 64 -----PVVDYSL------------RKFNKNTDPKEEINISFQELLQQV-PVDSTVIY--T 103
P + + + F K + + + ++ L ++ P + +I
Sbjct: 100 TEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVL 159
Query: 104 DASKTDVAVSSAFCSQDIKFSTRLHSLLSICNAELTSILFAIHFL-LSSC-----LNEHT 157
+ KT VA+ K ++ F I +L L +C + E
Sbjct: 160 GSGKTWVALDVC---LSYKVQCKMD--------------FKIFWLNLKNCNSPETVLEML 202
Query: 158 QA-CFVICSDSLSALQTLQNV-FSLNPIASEIRNLILENKSK---LSIRFIWVPSHVG-- 210
Q + I + S N+ ++ I +E+R L+ + L + +
Sbjct: 203 QKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAF 262
Query: 211 --------IAGNEE-ADRLAKEALTSTHPTINKIPIPDYKAYSKRKILTSWNSEWHNLQN 261
++ D L+ A T+TH +++ + K +L ++ + +
Sbjct: 263 NLSCKILLTTRFKQVTDFLS--AATTTHISLDHHSMTLTPDEVK-SLL----LKYLDCRP 315
Query: 262 NKL-HEIKVENKPWNPPYLIN 281
L E+ N P ++
Sbjct: 316 QDLPREVLTTN-----PRRLS 331
Score = 46.4 bits (109), Expect = 1e-05
Identities = 35/196 (17%), Positives = 65/196 (33%), Gaps = 60/196 (30%)
Query: 1 RNPNHFLSSLLTDHSLQQLYERKSSFEKPLRIRGKLLLEKYGIEYLDFLSPAPQTSAPWL 60
+ P S+ S+ + K E L + +++ Y I P+T
Sbjct: 419 KQPKESTISI---PSIYLELKVKLENEYALH---RSIVDHYNI---------PKTFDSDD 463
Query: 61 IEPPVVD-YSLRKFN------KNTDPKEEINISFQELL-------QQVPVDSTVIYTDAS 106
+ PP +D Y ++ KN + E + + F+ + Q++ DST S
Sbjct: 464 LIPPYLDQYF---YSHIGHHLKNIEHPERMTL-FRMVFLDFRFLEQKIRHDSTAWNASGS 519
Query: 107 KTDVAV-----SSAFCSQDIKFSTRLHSLLSICNAELTSILFAIHFLLSSCLNEHTQACF 161
+ C D K+ ++++L FL + E+
Sbjct: 520 ILNTLQQLKFYKPYICDNDPKYERLVNAIL--------------DFLPK--IEEN----- 558
Query: 162 VICSDSLSALQ-TLQN 176
+ICS L+ L
Sbjct: 559 LICSKYTDLLRIALMA 574
>2qkb_A Ribonuclease H1, HS-RNAse HC, RNAse H1; RNA/DNA hybrid; 2.40A {Homo
sapiens} PDB: 2qk9_A 2qkk_A*
Length = 154
Score = 48.0 bits (115), Expect = 4e-07
Identities = 15/29 (51%), Positives = 20/29 (68%)
Query: 196 SKLSIRFIWVPSHVGIAGNEEADRLAKEA 224
+ I+++ VP H G GNEEADRLA+E
Sbjct: 120 QGMDIQWMHVPGHSGFIGNEEADRLAREG 148
>3qio_A GAG-POL polyprotein; RNAse H, inhibitor, nuclease, transferase,
hydrolase- complex; HET: QID; 1.40A {Hiv-1 M} PDB:
3qin_A* 3hyf_A* 1o1w_A 3lp3_A* 1hrh_A 3k2p_A* 1rdh_A
Length = 150
Score = 46.0 bits (110), Expect = 2e-06
Identities = 12/29 (41%), Positives = 16/29 (55%)
Query: 196 SKLSIRFIWVPSHVGIAGNEEADRLAKEA 224
K + WVP+H GI GNE+ D+L
Sbjct: 116 KKEKVYLAWVPAHKGIGGNEQVDKLVSAG 144
>1jl1_A Ribonuclease HI; RNAse HI, protein stability, thermostability,
hydrogen exchange, cooperativity, hydrolase; 1.30A
{Escherichia coli} SCOP: c.55.3.1 PDB: 1f21_A 1jxb_A
1g15_A 1rch_A 1rdd_A 1rnh_A* 2rn2_A 1rda_A 1law_A 1rdb_A
1lav_A 3aa4_A 1rbu_A 1gob_A 1rdc_A 1kvc_A 3aa3_A 3aa2_A
3aa5_X 1rbv_A ...
Length = 155
Score = 42.5 bits (101), Expect = 3e-05
Identities = 13/48 (27%), Positives = 18/48 (37%), Gaps = 7/48 (14%)
Query: 192 LENKSKLSIRFIWVPSHVGIAGNEEADRLAKEALTSTHPTINKIPIPD 239
+ I++ WV H G NE AD LA+ A + D
Sbjct: 108 DAALGQHQIKWEWVKGHAGHPENERADELARAA-------AMNPTLED 148
>3h08_A RNH (ribonuclease H); RNAse H, 3D-structure, endonuclease,
hydrolase, magnesium, metal-binding; 1.60A
{Chlorobaculum tepidum}
Length = 146
Score = 41.7 bits (99), Expect = 5e-05
Identities = 11/34 (32%), Positives = 15/34 (44%)
Query: 191 ILENKSKLSIRFIWVPSHVGIAGNEEADRLAKEA 224
IL+ + + F V H N AD LA+ A
Sbjct: 108 ILKLTTLHRVTFHKVKGHSDNPYNSRADELARLA 141
>1ril_A Ribonuclease H; hydrolase(endoribonuclease); 2.80A {Thermus
thermophilus} SCOP: c.55.3.1 PDB: 2rpi_A
Length = 166
Score = 42.2 bits (100), Expect = 5e-05
Identities = 15/51 (29%), Positives = 19/51 (37%), Gaps = 4/51 (7%)
Query: 192 LENKSKLSIRFIWVPSHVGIAGNEEADRLAKEALTSTHPTINKIPIPDYKA 242
L + +RF +V H G NE DR A+ S K P P
Sbjct: 113 LLAMAPHRVRFHFVKGHTGHPENERVDREARRQAQS----QAKTPCPPRAP 159
>2zd1_A Reverse transcriptase/ribonuclease H; P51/P66, hetero dimer, NNRTI,
nonnucleoside inhibitor, AIDS, HIV, rilpivirine,
diarylpyrimidine, DAPY, DNA recombination; HET: T27;
1.80A {Human immunodeficiency virus 1} PDB: 3is9_A*
3irx_A* 2ze2_A* 3bgr_A* 3qlh_A* 3klf_A* 3qo9_A* 1dlo_A
1bqm_A 2be2_A* 1s6q_A* 1s6p_A* 1s9g_A* 1suq_A* 2b5j_A*
2b6a_A* 2ban_A* 1s9e_A* 1hni_A* 1hnv_A* ...
Length = 557
Score = 43.6 bits (103), Expect = 7e-05
Identities = 25/87 (28%), Positives = 40/87 (45%), Gaps = 14/87 (16%)
Query: 136 AELTSILFAIHFLLSSCLNEHTQACFVICSDSLSALQTLQN--VFSLNPIASEIRNLILE 193
EL +I A+ + + I +DS AL +Q S + + ++I I +
Sbjct: 479 TELQAIYLAL---------QDSGLEVNIVTDSQYALGIIQAQPDKSESELVNQI---IEQ 526
Query: 194 NKSKLSIRFIWVPSHVGIAGNEEADRL 220
K + WVP+H GI GNE+ D+L
Sbjct: 527 LIKKEKVYLAWVPAHKGIGGNEQVDKL 553
>2e4l_A Ribonuclease HI, RNAse HI; hydrolase, endoribonuclease; 2.00A
{Shewanella oneidensis} PDB: 2zqb_A
Length = 158
Score = 41.4 bits (98), Expect = 7e-05
Identities = 12/33 (36%), Positives = 16/33 (48%)
Query: 192 LENKSKLSIRFIWVPSHVGIAGNEEADRLAKEA 224
+ I + WV H G A NE D+LA+ A
Sbjct: 110 DKAAQLHQIDWRWVKGHAGHAENERCDQLARAA 142
>2ehg_A Ribonuclease HI; RNAse HI, hyperthermophilic archaeon, D stranded
RNA-dependent RNAse, hydrolase; 1.60A {Sulfolobus
tokodaii} PDB: 3aly_A
Length = 149
Score = 40.0 bits (94), Expect = 2e-04
Identities = 15/47 (31%), Positives = 22/47 (46%), Gaps = 8/47 (17%)
Query: 179 SLNPIASEIRNLILENKSKLSIRFIWVPSHVGIAGNEEADRLAKEAL 225
+ P+ + L KL+ IWVP N+EADRL++ A
Sbjct: 94 RIIPLYEKAIELK----KKLNATLIWVPR----EENKEADRLSRVAY 132
>3u3g_D Ribonuclease H, RNAse H1; hydrolase, cleave the RNA strand of
RNA/DNA hybrid; 1.40A {Uncultured organism}
Length = 140
Score = 38.7 bits (91), Expect = 5e-04
Identities = 11/46 (23%), Positives = 18/46 (39%), Gaps = 6/46 (13%)
Query: 180 LNPIASEIRNLILENKSKLSIRFIWVPSHVGIAGNEEADRLAKEAL 225
L ++I ++ K+ V H+ N AD L EA+
Sbjct: 96 LKEKFAKIAHI------KMERVPNLVFVHIPREKNARADELVNEAI 135
>1mu2_A HIV-2 RT; HIV-2 reverse transcriptase, AIDS, polymerase, drug
design, transferase; 2.35A {Human immunodeficiency virus
2} SCOP: c.55.3.1 e.8.1.2 PDB: 1mu2_B
Length = 555
Score = 40.1 bits (94), Expect = 7e-04
Identities = 21/60 (35%), Positives = 30/60 (50%), Gaps = 5/60 (8%)
Query: 163 ICSDSLSALQTLQN--VFSLNPIASEIRNLILENKSKLSIRFIWVPSHVGIAGNEEADRL 220
I DS + + + S + I ++I I E K +I WVP+H GI GN+E D L
Sbjct: 494 IIVDSQYVMGIVASQPTESESKIVNQI---IEEMIKKEAIYVAWVPAHKGIGGNQEVDHL 550
>3hst_B Protein RV2228C/MT2287; ribonuclease H1, RV2228C N-terminal domain,
fusion protein, maltose binding protein, HYDR; HET: MLR
TAR; 2.25A {Mycobacterium tuberculosis}
Length = 141
Score = 38.0 bits (89), Expect = 8e-04
Identities = 18/95 (18%), Positives = 33/95 (34%), Gaps = 17/95 (17%)
Query: 136 AELTSILFAIHFLLSSCLNEHTQACFVICSDSLSALQTLQNVF-----SLNPIASEIRNL 190
AE ++ + + E + DS ++ + + L + + + L
Sbjct: 49 AEYRGLIAGLDDAVKLGATE-----AAVLMDSKLVVEQMSGRWKVKHPDLLKLYVQAQAL 103
Query: 191 ILENKSKLSIRFIWVPSHVGIAGNEEADRLAKEAL 225
I + WVP N ADRLA +A+
Sbjct: 104 A---SQFRRINYEWVPRA----RNTYADRLANDAM 131
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 7.94A {Bos
taurus}
Length = 190
Score = 30.9 bits (69), Expect = 0.33
Identities = 7/76 (9%), Positives = 27/76 (35%), Gaps = 20/76 (26%)
Query: 211 IAGNEEADRLAKEALTSTHPTINKIPIPDYKAYSKRKILTSWNSEWHNLQNNKLHEIKVE 270
+ + A ++ ++ + +K+ + EW+ Q+ ++ + K+
Sbjct: 98 LQELDAASKVMEQEW---------------REKAKKDL-----EEWNQRQSEQVEKNKIN 137
Query: 271 NKPWNPPYLINRKEQV 286
N+ + + +
Sbjct: 138 NRIADKAFYQQPDADI 153
>1wgh_A Ubiquitin-like 3, HCG-1 protein; ubiquitin-like fold, structural
genomics, riken structural genomics/proteomics
initiative, RSGI, unknown function; NMR {Mus musculus}
SCOP: d.15.1.1
Length = 116
Score = 29.3 bits (65), Expect = 0.62
Identities = 14/70 (20%), Positives = 29/70 (41%), Gaps = 14/70 (20%)
Query: 245 KRKILTSWNSEWHNLQNNKLHEIKVENKPWNPPYLINR----KEQVSLTRLRIGHTNTTH 300
+ + +W +W Q + + ++ LI + V+L L++ TT
Sbjct: 43 AKHVYDNWPMDWEEEQVSSPNILR----------LIYQGRFLHGNVTLGALKLPFGKTTV 92
Query: 301 IHLMKKENPP 310
+HL+ +E P
Sbjct: 93 MHLVARETLP 102
>3k1f_M Transcription initiation factor IIB; RNA polymerase II, TFIIB,
transcription factor, DNA-binding, DNA-directed RNA
polymerase; 4.30A {Saccharomyces cerevisiae}
Length = 197
Score = 27.7 bits (61), Expect = 4.3
Identities = 6/14 (42%), Positives = 9/14 (64%)
Query: 311 ICVPCGCVMSVKHI 324
+C CG V+S K +
Sbjct: 44 VCALCGLVLSDKLV 57
>1n4k_A Inositol 1,4,5-trisphosphate receptor type 1; IP3 receptor,
IP3-binding core, calcium channel,protein- ligand
complex, B-trefoil fold; HET: I3P; 2.20A {Mus musculus}
SCOP: a.118.22.1 b.42.6.1
Length = 381
Score = 27.2 bits (59), Expect = 9.8
Identities = 14/88 (15%), Positives = 32/88 (36%), Gaps = 11/88 (12%)
Query: 7 LSSLLTDHSLQQLYERKSSFEKPLRIRGKLLLEKYGIEYLDFLSPAPQTSAPWLIEPPVV 66
L +T + + F KP R R KL+ E+ ++ + L++ P
Sbjct: 257 LVYFVTGGTNSGQDVLEVVFSKPNRERQKLMREQNILKQI-----------FKLLQAPFT 305
Query: 67 DYSLRKFNKNTDPKEEINISFQELLQQV 94
D + + ++ + F+ + +
Sbjct: 306 DCGDGPMLRLEELGDQRHAPFRHICRLC 333
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.319 0.133 0.400
Gapped
Lambda K H
0.267 0.0810 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 4,847,343
Number of extensions: 273299
Number of successful extensions: 739
Number of sequences better than 10.0: 1
Number of HSP's gapped: 734
Number of HSP's successfully gapped: 40
Length of query: 333
Length of database: 6,701,793
Length adjustment: 94
Effective length of query: 239
Effective length of database: 4,077,219
Effective search space: 974455341
Effective search space used: 974455341
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 57 (25.6 bits)