Query psy5305
Match_columns 947
No_of_seqs 246 out of 614
Neff 6.4
Searched_HMMs 46136
Date Fri Aug 16 23:09:38 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy5305.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/5305hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2514|consensus 100.0 3E-168 6E-173 1451.6 47.2 796 57-910 11-819 (861)
2 PF04547 Anoctamin: Calcium-ac 100.0 1E-105 3E-110 934.3 43.9 452 285-892 1-452 (452)
3 KOG2513|consensus 100.0 9E-101 2E-105 867.4 43.2 571 118-900 30-617 (647)
4 KOG2514|consensus 99.6 1.7E-17 3.8E-22 195.4 -3.9 526 51-736 121-655 (861)
5 PF02714 DUF221: Domain of unk 98.5 3.1E-05 6.7E-10 87.2 24.9 220 501-771 100-324 (325)
6 KOG1134|consensus 95.1 1.7 3.8E-05 54.4 21.5 210 511-771 416-630 (728)
7 COG5594 Uncharacterized integr 88.2 32 0.00069 43.2 19.5 61 500-564 463-523 (827)
8 PF02532 PsbI: Photosystem II 67.0 12 0.00026 28.4 4.2 31 544-574 2-32 (36)
9 COG1377 FlhB Flagellar biosynt 49.2 2.7E+02 0.0058 32.4 13.2 23 406-439 112-134 (363)
10 PRK02655 psbI photosystem II r 38.9 7.1 0.00015 29.8 -0.8 27 544-570 2-28 (38)
11 CHL00024 psbI photosystem II p 37.8 7.4 0.00016 29.5 -0.8 28 544-571 2-29 (36)
12 TIGR00811 sit silicon transpor 23.2 7.3E+02 0.016 29.8 11.2 34 287-320 125-158 (545)
13 PF07810 TMC: TMC domain; Int 23.0 6.9E+02 0.015 24.1 11.6 52 688-739 53-104 (111)
14 COG4890 Predicted outer membra 21.0 1.1E+02 0.0024 23.2 2.7 21 295-319 2-22 (37)
No 1
>KOG2514|consensus
Probab=100.00 E-value=2.8e-168 Score=1451.56 Aligned_cols=796 Identities=45% Similarity=0.796 Sum_probs=706.0
Q ss_pred CCCCCCCccEEEEeecCCCChHHHHHHHhHHHHHHHHHHHHHHHcCCEEEEEecceEEEEEEecChhhHHHHHHHhcccc
Q psy5305 57 KTEEEEPLDFILVWAKPYNRREELEQEANHAEMKRNIFEKNLKKQGLILKEHHNGHLCFVTIYAPRSVLLTYADIMKLRM 136 (947)
Q Consensus 57 ~~dg~r~iDyVLvy~~~~~~~~e~~~~~~~~~~~R~~Fe~~L~~~GL~lE~~~~~~~~FVkIhAP~~vL~r~AE~L~Lkm 136 (947)
+.||.|++||||||+... ...+ . + +|+.|++||.++||++|.+ .+.+|+|+|+||++|.++||.++++|
T Consensus 11 ~~~~~~~id~vl~~~~~~-~~~~--~-----~-~r~~fe~nl~~egl~~e~~--~~~~f~~ih~p~~~l~r~ae~~k~~~ 79 (861)
T KOG2514|consen 11 FFDGRRSIDFVLVYRGAE-TRSE--G-----K-RREFFEKNLIKEGLEVEHE--QSTHFVKIHAPWHVLTREAEMLKLKM 79 (861)
T ss_pred cCCCccccceEeeccccc-cccc--h-----h-hHHHHHhhhhhhhceeccc--cceeeeeccCcchhHHHHHHHHHhhh
Confidence 789999999999999322 2212 1 3 6789999999999999975 33999999999999999999999999
Q ss_pred cCccCCCCCCCcccchhhhhhHHHHHHHhhcccccC-C--CCCCCCCCccccccccccccccc-cCCCCCCCHHHHHHHH
Q psy5305 137 PMKSYDDTDGSTKKFNILSEAANFVVLFIKLCIAIE-P--ANMPMKKLPLTAQYTKAKHYLFD-EENSDFLSPPSRSLII 212 (947)
Q Consensus 137 plk~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~--~~~~~~~~~~t~~F~~~k~~~f~-~~~~~fft~aeR~rIv 212 (947)
|+++.......+.. +. ............ +++.. . ...++++..|+++++|.+.++|. .+++++|+.++|+++|
T Consensus 80 p~k~~~~~~~~ps~-~~-~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~f~~~~sr~~~~~f~~k~~~~~f~~a~rs~~v 156 (861)
T KOG2514|consen 80 PLKDCQVKSVLPSS-CI-PLFQIFVTDDTQ-PLQRKHGSLFLNLEDEKSFTASSSRGKEYQFIIKIDDTFFTKAERSRIV 156 (861)
T ss_pred hHHhhhhccCCCcc-cc-hHHhhhhhhhhh-hhhhccccccccccccccccccccCcceEEEEEecCchhhhhhhhhhhc
Confidence 99986554322211 11 111111110000 12111 1 12234667899999999988898 7789999999999999
Q ss_pred HHHHhcCCCcccCccccccccccccccCceeeeeecCCCCCCCCCCCcchhHHHHHHhhcccccccCCChhHHHhhcCce
Q psy5305 213 DFILSRQSFTANNKDLANVGIQRLIEDGIYKAAYPLHDGDWATGDPEKSLRYSLYKEWAHLRNWIKNQPADQIKEYLGVK 292 (947)
Q Consensus 213 ~~iL~~~~~~~~~~~~~~~gI~~Ll~~gv~~a~fPLHD~~~~~~~~~~~~R~~L~~~Wa~~~~~~~~QPLd~Ir~YFGEK 292 (947)
+.++.|+.+.++ ...+||.+|++.|+|.++|||||+++..+..-.++|..+++.|++|.+|+++||+|.||.|||||
T Consensus 157 e~~l~rt~~~~~---~~~~gi~~l~~~~~y~aa~plh~g~~~~~~~~~~~r~~lyq~wa~~~~wyk~qpl~~ir~yfg~k 233 (861)
T KOG2514|consen 157 EPILPRTSFIEQ---LRRKGIRRLIASGVYEAAFPLHDGEYKAMQGGSVDRYLLYQLWANWERWYKFQPLDLIRKYFGEK 233 (861)
T ss_pred hhhcccccchhh---hhhhchHHHHhhcceeeeeeccccCcccccccchhHHHHHhcccccCcccccChHHHHHHhhhHH
Confidence 999999998633 37899999999999999999999998332235678999999999999999999999999999999
Q ss_pred eehhHHHHHHHHHHHHHHHHHHHHHHhhhhccccCCCchhhhccCCCceeeccCccCCCCccccccccccceeccccCCC
Q psy5305 293 CAFYFVWLGFYTHMLIPASILGLTVFLYGVFTLNNDSLSRDICNKTLNIIMCPLCDRTCDYWKLSDTCKSARVTYLFDNT 372 (947)
Q Consensus 293 IA~YFAwLgfYT~~Li~pAi~Gl~~~l~g~~~~~~~~~~~eiC~~~~~~~mcP~c~~~c~~w~l~~~c~~~~~~~lfDn~ 372 (947)
||+||||+|+||.+|+++|++|++||+||+++..++++++++|+.+.+++|||+|| .|.||+|+.+|.+++++|+|||+
T Consensus 234 i~lyfawlg~yt~~l~~~ai~glivf~yg~~~~~~~~~~~~~c~~~~~~t~cplcd-~c~~~~l~~sc~~~~~~~lfdn~ 312 (861)
T KOG2514|consen 234 IALYFAWLGTYTTMLWPASIVGLIVFIYGLATLENAPPSKEICKVFTNITMCPLCD-MCNYWRLSESCVTAKVTYLFDNP 312 (861)
T ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhcCCchHHHHhhcCcEEeccccc-cccceehHHHHHhhHHHHHhccc
Confidence 99999999999999999999999999999999999999999999666999999999 99999999999999999999999
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHhhhhhcccCCcccccccccCCcccccccccccccceeecCCCC-ceeecCCccchhh
Q psy5305 373 FSVIFAFLMSIWAVLFLESWKRYSAAITHRWGLTHFTLEAEHPRPSYLARLSHLKRTKTIMNIITG-TEEPRAPFWIRWP 451 (947)
Q Consensus 373 ~t~~faif~~lWat~FlE~WKRr~a~la~~Wg~~~~~~~~e~~Rp~f~g~~~~~~~~~~~~npvTg-~~e~~~p~~kr~~ 451 (947)
.+++||+||++|+++|+|+|||+++.+.++||..+++.++|..+++|..++ ..+++|+ +.+++.|.+.|..
T Consensus 313 ~tvffavfms~wat~f~e~wkr~~~vl~~~wdl~~~~~~ee~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~r~~ 384 (861)
T KOG2514|consen 313 STVFFAVFMSIWATVFLELWKRKQSVLTYRWDLTGFEEEEEDRPEQFEAKY--------ETDPITNEEDEPISPWRDRYI 384 (861)
T ss_pred hHHHHHHHHHHhHHHHHHHHHhhheeeeeeeccccccccccccchhhhhhh--------eeecccCCCCcccCcHHHHhH
Confidence 999999999999999999999999999999999999987666666887665 4588888 6777878777999
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccccccchhhhhhhHHHHHHHHHHHHHHHHHHHHHhcc
Q psy5305 452 TRILSFSVVLILIMCALATVVGVVLYRMSLYATLSLSHKADWMNSYGIVIIPFTAACINLVCIQILNLVYARLATYMTEF 531 (947)
Q Consensus 452 r~l~s~~ivl~~i~lvi~~v~~v~v~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~v~I~il~~vY~~lA~~LT~~ 531 (947)
++++++..|++|+++++++++||++||+.+..++... +..+++....++.+++++|+++|++||.+|.++|.+||+|
T Consensus 385 ~~l~~~~~v~f~iav~~~~~l~V~lyri~~~~a~~~~---~~~~~~~~~~at~~a~~in~~~i~~L~~iy~~~a~~lt~~ 461 (861)
T KOG2514|consen 385 AMLASFSFVLFMIAVVFSAVLGVILYRISMVAALQCG---KFTTSHAWLSATATAVIINLVVIMILNAIYSNLASRLTNL 461 (861)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC---ccceehhhhHhHHHHHHHHHHHHHHHHHHhhhHHHHHhhh
Confidence 9999999999999999999999999999998877654 3366667777888999999999999999999999999999
Q ss_pred CCCCChHHHhhhHHHHHHHHHHhhhhhHHHHHHhhcccccCCCccchhhcc-ccccccCCCCchhhHHHHHHHHHHHHHH
Q psy5305 532 EYLRTQTEFDESLAIKIYLFQFVNYYTSIFYIAFLKGKFIGYPAKYTRVFN-LRQEECSPGGCFMELSIQLAVIMVGQQT 610 (947)
Q Consensus 532 ENhrT~~~ye~sli~K~FlF~FvN~y~sLFYiAF~~~~f~g~pg~y~~~~g-~r~~~c~~~gC~~~L~~qL~~i~v~kQi 610 (947)
|||||+++||||+|+|+|+|||||+|+|+||||||+|.|+|+||.|+.+|| +|+++|+|+||+++|++||.++|++||+
T Consensus 462 e~prTe~~~ensl~~KiflfqfvN~yssifYVAFfkg~fvg~pg~~~~~f~~~r~eeC~p~gCl~eLciQl~iimlgKq~ 541 (861)
T KOG2514|consen 462 ENPRTESEFENSLILKIFLFQFVNYYSSIFYIAFFKGRFVGYPGDYVYLFGRYRNEECDPGGCLSELCIQLAIIMLGKQI 541 (861)
T ss_pred cCccchhhhcchhHHHHHHHHHHHhcCceEEEEEEeceeccCCCCcceecccceeccccccchHHHHHHHHHHHHHHhhh
Confidence 999999999999999999999999999999999999999999999999999 9999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcCCCCchhhhhhhhhhhhhhhhhccccccCCCCCCCchhhhHHHHHhhccCCCCCCCh
Q psy5305 611 FNSIVEMFIPYFWKLYNVFMITTGLSDDLSENQKNADLINLHELIRNSSLTSKSTTTTDPRAKQWLEDFKLLDWGTRGLY 690 (947)
Q Consensus 611 i~~~~E~~lP~l~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~d~~L~~~~~~~lf 690 (947)
+||++|+++|++++++++++.+.+.... + ...+....+|++||.|.+.+.+|++
T Consensus 542 ~nn~~ev~~P~f~~~~~~~~~~~~s~~~----------------~----------~~~~~~~~~w~~d~~L~p~~~~gL~ 595 (861)
T KOG2514|consen 542 WNNFMEVGLPKFWKLIRQYKLKTEARVT----------------I----------DDDSANVERWEQDYHLQPMGLLGLT 595 (861)
T ss_pred hHHHHHHHHHHHHHHHHHHhhhccCCCc----------------c----------chhhhcccchhhccccCCccccccc
Confidence 9999999999999999888766543100 0 0112233689999999998889999
Q ss_pred hHHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHhhhhHHHHHhhccCCCcccccccccHHHHHHHHHHHHHHHHHHHHH
Q psy5305 691 PEYLEMVLQYGFVVLFVSAFPLAPLFALINNIFETRLDAQKFLKYYRRPVPHRATNIGIWFRVLDVVAKLAVISNAVLIA 770 (947)
Q Consensus 691 ~DYlEmvIQFGyvtLFsaafPLAPl~ALlNNiiEiR~Da~Kl~~~~RRP~p~ra~~IG~W~~iLe~l~~laVitN~~lIa 770 (947)
+||+||++||||||+|+++|||||++||+||++|+|+||+||++..|||+++|+.+||+|+.||+.|+++|||||+++||
T Consensus 596 ~eylemi~q~gFvtlFva~FpLaplfaLLnniieirlda~Kl~t~~rRpv~~r~~diG~W~~il~~i~~lavi~nafiIa 675 (861)
T KOG2514|consen 596 PEYLEMILQFGFVTLFVAAFPLAPLFALLNNIIEIRLDAKKLVTQKRRPVAARAVDIGAWYGILQGIGKLAVITNAFIIA 675 (861)
T ss_pred HHHHHHHHHhccchhhhhhhhhHHHHHHHHHHHhhhhhHHHHHHhhhcchhHHHhhhhhhHhhhcceeeEEeecceeeee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcCCCccchhhhh-cCC------CCCcccccccccccccccccccccCCCCCCCCCcccccccccCCCCCCCCccccccc
Q psy5305 771 FTSNFIPRIMYKF-LGS------KNFTDEGFLNDTLSYFNTSDFQESARPLYPSINVTMCRYHNYRNPPWFEPNHLKYKR 843 (947)
Q Consensus 771 ftS~~ipr~vy~~-~~~------~~~~l~gy~n~sls~f~~~~~~~~~~p~~~~~~~t~cry~~~r~~p~~~~~~~~y~~ 843 (947)
+|||+|||+||.| |+- +.++++||+|+|||.|+++||..+..++.+..|.++|||||||.|||++. +|.+
T Consensus 676 ~tsd~Iprlvy~~k~s~~~~~~~S~~tl~gy~n~tlS~f~~sd~~~~~~~~~d~~~~~tCrYrdyR~pP~s~~---pY~~ 752 (861)
T KOG2514|consen 676 FTSDFIPRLVYEFKYSKSQPRMRSFGTLLGYVNHTLSIFNVSDFKEEKSGESDPADLTTCRYRDYRIPPWSPE---PYGL 752 (861)
T ss_pred eeccchhhhhheeEeccCCCcccccchhhhhhhccccccchhhccCCCCCCCCccccceeeeccccCCCCCcc---cccc
Confidence 9999999999999 641 23899999999999999999999888865445778999999999999998 9999
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHHhhhhhhhc
Q psy5305 844 SWYYWKLLAARLGFIVVFQNVVSFGMIILQWLIPDIPSELKDQIKREEYLTSELIIKHETKRATAKQ 910 (947)
Q Consensus 844 ~~~~W~~la~rl~fviv~EHvvl~ik~~i~~~IpdvP~~v~~~~~re~yl~~~~l~~~e~~~~~~~~ 910 (947)
+++|||+|||||+|||||||+|+.+|.+|+|+|||+|.++++||+||+||+++++.++|.++++...
T Consensus 753 s~~~whvlAarLaFiiVfehlV~~ik~~i~~~IPDvPk~l~dqi~REkyL~~e~~~e~eler~qk~r 819 (861)
T KOG2514|consen 753 SIQYWHVLAARLAFVIVFENLVFEIKELVSWTIPDVPKDLKDQIRREKYLAQELFYETEIEKLQKLR 819 (861)
T ss_pred chhHHHHHHHHhhHHHHHHHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 9999999999999999999999999999999999999999999999999999999999999887664
No 2
>PF04547 Anoctamin: Calcium-activated chloride channel; InterPro: IPR007632 This family contains the anoctamin/TMEM16 proteins which are thought to be calcium-dependent chloride channel [].
Probab=100.00 E-value=1.3e-105 Score=934.31 Aligned_cols=452 Identities=46% Similarity=0.830 Sum_probs=400.1
Q ss_pred HHhhcCceeehhHHHHHHHHHHHHHHHHHHHHHHhhhhccccCCCchhhhccCCCceeeccCccCCCCccccccccccce
Q psy5305 285 IKEYLGVKCAFYFVWLGFYTHMLIPASILGLTVFLYGVFTLNNDSLSRDICNKTLNIIMCPLCDRTCDYWKLSDTCKSAR 364 (947)
Q Consensus 285 Ir~YFGEKIA~YFAwLgfYT~~Li~pAi~Gl~~~l~g~~~~~~~~~~~eiC~~~~~~~mcP~c~~~c~~w~l~~~c~~~~ 364 (947)
||+|||||||||||||||||+||+|||++|++++++|..
T Consensus 1 Ir~YFGekia~YFafl~~yt~~L~~~ai~G~~~~~~~~~----------------------------------------- 39 (452)
T PF04547_consen 1 IRSYFGEKIAFYFAFLGFYTRWLIPPAIFGLIVFLYGLS----------------------------------------- 39 (452)
T ss_pred ChHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-----------------------------------------
Confidence 799999999999999999999999999999999999753
Q ss_pred eccccCCCcchhHHHHHHHHHHHHHHHHHHHhhhhhcccCCcccccccccCCcccccccccccccceeecCCCCceeecC
Q psy5305 365 VTYLFDNTFSVIFAFLMSIWAVLFLESWKRYSAAITHRWGLTHFTLEAEHPRPSYLARLSHLKRTKTIMNIITGTEEPRA 444 (947)
Q Consensus 365 ~~~lfDn~~t~~faif~~lWat~FlE~WKRr~a~la~~Wg~~~~~~~~e~~Rp~f~g~~~~~~~~~~~~npvTg~~e~~~ 444 (947)
.++.+|++++++||++|++||++|+|+|||||++++++||+.++++++|++||+|+|+. .+.|||||+.++++
T Consensus 40 ~~~~~~~~~~~~fai~~~~W~~~fle~Wkr~~~~l~~~Wg~~~~~~~~e~~r~~f~g~~-------~~~~~vtg~~~~~~ 112 (452)
T PF04547_consen 40 FSYLFDNPFTPFFAIFMSLWATLFLEFWKRKEAELAYRWGTFDFEEEEEEPRPEFKGQP-------IRIDPVTGEMEPYY 112 (452)
T ss_pred cccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchhhhhccchhhcccc-------ccccccCCCCccCC
Confidence 23568999999999999999999999999999999999999999955789999999954 37999999999999
Q ss_pred CccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccccccchhhhhhhHHHHHHHHHHHHHHHHH
Q psy5305 445 PFWIRWPTRILSFSVVLILIMCALATVVGVVLYRMSLYATLSLSHKADWMNSYGIVIIPFTAACINLVCIQILNLVYARL 524 (947)
Q Consensus 445 p~~kr~~r~l~s~~ivl~~i~lvi~~v~~v~v~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~v~I~il~~vY~~l 524 (947)
|.|+|..|+++|+|++++|++++++++++++.++..+...+.. + . ...+.+++|+++|+++|+++|.+|+++
T Consensus 113 p~~~r~~r~~~s~~ivl~~i~i~~~~~~~~~~~~~~~~~~~~~----~-~---~~~~~~~~~~vl~~v~i~il~~iy~~~ 184 (452)
T PF04547_consen 113 PPWKRILRYLVSVPIVLLFILIVIGIVIGVFYLRIYLTEIYSG----P-G---KQFLASLIPTVLNAVVILILNFIYRKL 184 (452)
T ss_pred cHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc----c-c---hhHHHHHHHHHHHHHHHHhhhhHHHHH
Confidence 9999999999999999999999999999999999777654432 1 1 234667899999999999999999999
Q ss_pred HHHHhccCCCCChHHHhhhHHHHHHHHHHhhhhhHHHHHHhhcccccCCCccchhhccccccccCCCCchhhHHHHHHHH
Q psy5305 525 ATYMTEFEYLRTQTEFDESLAIKIYLFQFVNYYTSIFYIAFLKGKFIGYPAKYTRVFNLRQEECSPGGCFMELSIQLAVI 604 (947)
Q Consensus 525 A~~LT~~ENhrT~~~ye~sli~K~FlF~FvN~y~sLFYiAF~~~~f~g~pg~y~~~~g~r~~~c~~~gC~~~L~~qL~~i 604 (947)
|.+||+||||||+++||+|+++|+|+|+|+|+|++|||+||+++ .+.+.|++ |+.+|+.||+++
T Consensus 185 a~~Lt~~EnhrT~~~ye~sli~K~F~f~fvn~y~~LfyiaF~~~--------------~~~~~~~~--~~~~L~~ql~~~ 248 (452)
T PF04547_consen 185 AKKLTDWENHRTESEYENSLIIKVFLFQFVNSYAPLFYIAFFYG--------------VRQEECQP--CLSRLRIQLFTI 248 (452)
T ss_pred HHHHHHhccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--------------hcccccCC--CHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999997 26789999 999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCchhhhhhhhhhhhhhhhhccccccCCCCCCCchhhhHHHHHhhccCC
Q psy5305 605 MVGQQTFNSIVEMFIPYFWKLYNVFMITTGLSDDLSENQKNADLINLHELIRNSSLTSKSTTTTDPRAKQWLEDFKLLDW 684 (947)
Q Consensus 605 ~v~kQii~~~~E~~lP~l~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~d~~L~~~ 684 (947)
|+++|++++++|+++|++++++++++.++...+. ..+ +..+........++|++|+.|.++
T Consensus 249 ~~~~qi~~~~~e~~~P~~~~~~~~~~~~~~~~~~------~~~-------------~~~~~~~~~~~~~~~~~e~~l~~y 309 (452)
T PF04547_consen 249 MVTKQIINNLLEVVLPYLKKRYRRKKIRKKQRKK------QQD-------------ERQENEEENQFLQQWEKEYELPPY 309 (452)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhc------ccc-------------cccccccccchHHHHHHHhcCCCC
Confidence 9999999999999999999988777543321100 000 000011233445799999999999
Q ss_pred CCCCChhHHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHhhhhHHHHHhhccCCCcccccccccHHHHHHHHHHHHHHH
Q psy5305 685 GTRGLYPEYLEMVLQYGFVVLFVSAFPLAPLFALINNIFETRLDAQKFLKYYRRPVPHRATNIGIWFRVLDVVAKLAVIS 764 (947)
Q Consensus 685 ~~~~lf~DYlEmvIQFGyvtLFsaafPLAPl~ALlNNiiEiR~Da~Kl~~~~RRP~p~ra~~IG~W~~iLe~l~~laVit 764 (947)
+..|+|+||+||+||||||||||+||||||++|++||++|+|+||+|+|+.+|||+|+|++|||+|+.||++|+++||+|
T Consensus 310 ~~~g~~~dY~emviQFGyv~lF~~afPlapl~allnN~~eir~D~~Kl~~~~rRP~p~~~~~IG~W~~il~~i~~lav~t 389 (452)
T PF04547_consen 310 DPDGLFDDYLEMVIQFGYVTLFSAAFPLAPLFALLNNIVEIRLDAFKLLYLYRRPVPRRASSIGIWNNILEIISWLAVIT 389 (452)
T ss_pred CcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhCCCCcccccchhhhHHHHHHHHHHHHHH
Confidence 87799999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCCCccchhhhhcCCCCCcccccccccccccccccccccCCCCCCCCCcccccccccCCCCCCCCccccccch
Q psy5305 765 NAVLIAFTSNFIPRIMYKFLGSKNFTDEGFLNDTLSYFNTSDFQESARPLYPSINVTMCRYHNYRNPPWFEPNHLKYKRS 844 (947)
Q Consensus 765 N~~lIaftS~~ipr~vy~~~~~~~~~l~gy~n~sls~f~~~~~~~~~~p~~~~~~~t~cry~~~r~~p~~~~~~~~y~~~ 844 (947)
||++|++||+ ++++||+++
T Consensus 390 N~~li~~~s~--------------~~~~~~~~~----------------------------------------------- 408 (452)
T PF04547_consen 390 NAALIAFTSD--------------GQLQGYFPD----------------------------------------------- 408 (452)
T ss_pred HHHHHHhhhc--------------chhhhhccc-----------------------------------------------
Confidence 9999999984 123444321
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHH
Q psy5305 845 WYYWKLLAARLGFIVVFQNVVSFGMIILQWLIPDIPSELKDQIKREEY 892 (947)
Q Consensus 845 ~~~W~~la~rl~fviv~EHvvl~ik~~i~~~IpdvP~~v~~~~~re~y 892 (947)
..++.|+++++++||+++++|++++++|||+|+||+++++||+|
T Consensus 409 ----~~~~~~~~~~l~~eh~~~~~~~~i~~~ipd~P~~v~~~~~r~~Y 452 (452)
T PF04547_consen 409 ----SSLAQRLLFFLVFEHVVFFLKYLISWLIPDVPKWVRIQIQREEY 452 (452)
T ss_pred ----chHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHhcC
Confidence 13467899999999999999999999999999999999999997
No 3
>KOG2513|consensus
Probab=100.00 E-value=8.6e-101 Score=867.38 Aligned_cols=571 Identities=29% Similarity=0.468 Sum_probs=449.6
Q ss_pred EecChhhHHHHHHHhcccccCccCCCCCCCcccchhhhhhHHHHHHHhhcccccCCCCCCCCCCccccccccccccccc-
Q psy5305 118 IYAPRSVLLTYADIMKLRMPMKSYDDTDGSTKKFNILSEAANFVVLFIKLCIAIEPANMPMKKLPLTAQYTKAKHYLFD- 196 (947)
Q Consensus 118 IhAP~~vL~r~AE~L~Lkmplk~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~t~~F~~~k~~~f~- 196 (947)
+.++-..|++.|++.++++.++...+ .-+..|.+...+.+.
T Consensus 30 ~~~~~~~ll~~~~~~~~~k~v~~~~~--------------------------------------~~~r~F~~~e~d~~~~ 71 (647)
T KOG2513|consen 30 VMATTISLLRGAQEIGLRKTVEANEK--------------------------------------TLKRVFTREEIDCLIE 71 (647)
T ss_pred HHHhHHHHHhhhhhhccceeeeccCC--------------------------------------CceeEEEeeccchhhh
Confidence 34678888999998888776665211 112344444555554
Q ss_pred --cCCCCCCCHHHHHHHHHHHHhcCCCcccC--c-----cccccccccccccCceeeeeecCCCCCCCCCCCcchhHHHH
Q psy5305 197 --EENSDFLSPPSRSLIIDFILSRQSFTANN--K-----DLANVGIQRLIEDGIYKAAYPLHDGDWATGDPEKSLRYSLY 267 (947)
Q Consensus 197 --~~~~~fft~aeR~rIv~~iL~~~~~~~~~--~-----~~~~~gI~~Ll~~gv~~a~fPLHD~~~~~~~~~~~~R~~L~ 267 (947)
.+..++||..+|+.++++-|.+.+..+.+ + ..+..++..+.+.|.+.+.|||||+.. ...+.
T Consensus 72 l~~~lr~~~t~~~~q~~n~~~l~~~~a~~~e~i~~~a~~~~~~~i~~~~~~~g~I~~vFpLh~p~~---------l~~~~ 142 (647)
T KOG2513|consen 72 LAHDLRTSFTSQERQQLNAHELQSLRAPDEEIILNAAIPYHIQSIIRDLHKSGIIIQVFPLHDPKQ---------LEKLN 142 (647)
T ss_pred hcchhhhhhhHHHHHHHHHHHHHHhhccchhhhhccceeccccccchhhhhCceeEEeccccChHH---------HHHHH
Confidence 45556999999999999999988876332 1 135667778889999999999999864 44677
Q ss_pred HHhhcccccccCCChhHHHhhcCceeehhHHHHHHHHHHHHHHHHHHHHHHhhhhccccCCCchhhhccCCCceeeccCc
Q psy5305 268 KEWAHLRNWIKNQPADQIKEYLGVKCAFYFVWLGFYTHMLIPASILGLTVFLYGVFTLNNDSLSRDICNKTLNIIMCPLC 347 (947)
Q Consensus 268 ~~Wa~~~~~~~~QPLd~Ir~YFGEKIA~YFAwLgfYT~~Li~pAi~Gl~~~l~g~~~~~~~~~~~eiC~~~~~~~mcP~c 347 (947)
+.|.+ ...+.||||.||+|||++||+|||||+|||..+++||++|++.+.+-.
T Consensus 143 ~~W~~--~~~~nqpld~I~~yfG~~ialYfa~L~~ft~a~i~~a~~g~~~Y~f~~------------------------- 195 (647)
T KOG2513|consen 143 KYWYQ--LLTKNQPLDDIRAYFGSKIALYFAFLEFFTFALIVPAVFGILLYEFLS------------------------- 195 (647)
T ss_pred HHHHH--HHhcCCCchHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhHHHhhccc-------------------------
Confidence 88976 445679999999999999999999999999999999999998865421
Q ss_pred cCCCCccccccccccceeccccCCCcchhHHHHHHHHHHHHHHHHHHHhhhhhcccCCcccccccccCCccccccccccc
Q psy5305 348 DRTCDYWKLSDTCKSARVTYLFDNTFSVIFAFLMSIWAVLFLESWKRYSAAITHRWGLTHFTLEAEHPRPSYLARLSHLK 427 (947)
Q Consensus 348 ~~~c~~w~l~~~c~~~~~~~lfDn~~t~~faif~~lWat~FlE~WKRr~a~la~~Wg~~~~~~~~e~~Rp~f~g~~~~~~ 427 (947)
. ....+||.|+++|+++|+|+||||+++++++||+....+..|.|||+|.|..
T Consensus 196 -------~----------------~s~~~f~~f~vlWttlFlefWkrk~a~l~~~Wgt~~~~e~~~~prp~~~g~~---- 248 (647)
T KOG2513|consen 196 -------T----------------YSLTFFASFNVLWTTLFLEFWKRKCAELTYRWGTLLSKELSEEPRPEFLGVL---- 248 (647)
T ss_pred -------c----------------hhhhHHHHHHHHHHHHHHHHHHhhhhhcccchhhhhhhhhhcCCCchhcccc----
Confidence 0 1234899999999999999999999999999999998866789999999876
Q ss_pred ccceeecCCCCceeecCCccch-hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccccccchhhhhh
Q psy5305 428 RTKTIMNIITGTEEPRAPFWIR-WPTRILSFSVVLILIMCALATVVGVVLYRMSLYATLSLSHKADWMNSYGIVIIPFTA 506 (947)
Q Consensus 428 ~~~~~~npvTg~~e~~~p~~kr-~~r~l~s~~ivl~~i~lvi~~v~~v~v~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 506 (947)
+.|++||+.|||||.|+| ..++++|+|+++++++++..+++.++....++.. . ..|+ +.+ +.+++|
T Consensus 249 ----~~n~itgk~e~~yp~w~~~~~~~~vsvPv~l~c~~i~l~f~l~~f~ie~~~~s---~-~~~~-~~s----ils~lP 315 (647)
T KOG2513|consen 249 ----RINSITGKAEPYYPEWKRILRRYLVSVPVILLCLCILLSFMLYCFQIEVWVLS---D-YGGP-LIS----ILSYLP 315 (647)
T ss_pred ----ccCccccccCccccHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHH---H-cCCc-hHH----HHHHHH
Confidence 899999999999999994 5669999999999888888877776665544433 2 2344 333 567899
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhccCCCCChHHHhhhHHHHHHHHHHhhhhhHHHHHHhhcccccCCCccchhhcccccc
Q psy5305 507 ACINLVCIQILNLVYARLATYMTEFEYLRTQTEFDESLAIKIYLFQFVNYYTSIFYIAFLKGKFIGYPAKYTRVFNLRQE 586 (947)
Q Consensus 507 ~il~~v~I~il~~vY~~lA~~LT~~ENhrT~~~ye~sli~K~FlF~FvN~y~sLFYiAF~~~~f~g~pg~y~~~~g~r~~ 586 (947)
+++.+++|++|+.+|+++|++||+||||||+++|++|++.|+|+|+|+|+|.|||||||+++||
T Consensus 316 ~iv~~~li~~~t~~Y~k~Ae~Lt~~EN~r~~s~y~~hli~K~~lf~f~nsy~sLFyi~f~l~d~---------------- 379 (647)
T KOG2513|consen 316 TIVYAVLIPVLTRIYKKLAEFLTKLENHRLESAYQKHLIAKVFLFNFVNSYLSLFYIAFLLRDM---------------- 379 (647)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccH----------------
Confidence 9999999999999999999999999999999999999999999999999999999999999886
Q ss_pred ccCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------hhcCCCCchhhhhhhhhhhhhhhhhccccc
Q psy5305 587 ECSPGGCFMELSIQLAVIMVGQQTFNSIVEMFIPYFWKLYNVFM------ITTGLSDDLSENQKNADLINLHELIRNSSL 660 (947)
Q Consensus 587 ~c~~~gC~~~L~~qL~~i~v~kQii~~~~E~~lP~l~~~~~~~~------~~~~~~~~~~~~~k~~~~~~~~~~~~~~s~ 660 (947)
..|+.|+++..++.|++.+++|..+|+++..+++.+ .+....+..+ .+.+.+..+-+.+ .+|.
T Consensus 380 --------~~Lk~~l~~~li~sQ~l~~~~e~~~p~f~~~~~r~~~~~~f~t~~~ae~~~s-~~~~i~~~~~~~~--~~s~ 448 (647)
T KOG2513|consen 380 --------ELLKQQLATLLITSQSLLNLMEIALPYFKIRTKRYENYIRFRTKSFAEELAS-AQAKIDGESPGFP--APSR 448 (647)
T ss_pred --------HHHHHHHHHHHHHHHHHHHHHhhcchHHHHhhhhhhhhhhHHHHHHHHhhcc-chhhhcccccCCC--Cccc
Confidence 268999999999999999999999999976666333 0000000000 0000000000111 0010
Q ss_pred cCCCCCCCchhhhHHHHHhhccCCCCCCChhHHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHhhhhHHHHHhhccCCC
Q psy5305 661 TSKSTTTTDPRAKQWLEDFKLLDWGTRGLYPEYLEMVLQYGFVVLFVSAFPLAPLFALINNIFETRLDAQKFLKYYRRPV 740 (947)
Q Consensus 661 ~~~~~~~~~~~~~~~~~d~~L~~~~~~~lf~DYlEmvIQFGyvtLFsaafPLAPl~ALlNNiiEiR~Da~Kl~~~~RRP~ 740 (947)
. .....-+.+.|.+-|..+..+ +|+|+||+||++|||||+|||+||||||++||+||++|||+||+|+|+..|||+
T Consensus 449 ~--~~a~~~~~~~qa~~E~~~~~y--dgtf~Dylel~lQFGyvVlFS~~~PLA~~~aLvnNv~eirsda~Kl~~~~krPf 524 (647)
T KOG2513|consen 449 E--PEAQLFPSLKQAELESGLAEY--DGTFDDYLELLLQFGYVVLFSCAFPLAAIFALVNNVIEIRSDALKLCLVLKRPF 524 (647)
T ss_pred c--cchhhcccchhhhhcchhhhh--cchhHHHHHHHHHhhHHHHHHhHhhHHHHHHHHHHHhhhhHHHHHHHHhcCCCC
Confidence 0 000111112445445444433 379999999999999999999999999999999999999999999999999999
Q ss_pred cccccccccHHHHHHHHHHHHHHHHHHHHHhcCCCccchhhhhcCCCCCcccccccccccccccccccccCCCCCCCCCc
Q psy5305 741 PHRATNIGIWFRVLDVVAKLAVISNAVLIAFTSNFIPRIMYKFLGSKNFTDEGFLNDTLSYFNTSDFQESARPLYPSINV 820 (947)
Q Consensus 741 p~ra~~IG~W~~iLe~l~~laVitN~~lIaftS~~ipr~vy~~~~~~~~~l~gy~n~sls~f~~~~~~~~~~p~~~~~~~ 820 (947)
|+|+.+||+|+++|++|+++|++|||+||++.++. + +
T Consensus 525 p~r~~~IG~Wq~~l~~lSvls~vtncaLi~~~~~~------------~----~--------------------------- 561 (647)
T KOG2513|consen 525 PRRVANIGAWQNALELLSVLSCVTNCALIGMYPQV------------N----K--------------------------- 561 (647)
T ss_pred cchhhhhHHHHHHHHHHHHHHHHHhHHHHhccccc------------c----c---------------------------
Confidence 99999999999999999999999999999874421 0 0
Q ss_pred ccccccccCCCCCCCCccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHH
Q psy5305 821 TMCRYHNYRNPPWFEPNHLKYKRSWYYWKLLAARLGFIVVFQNVVSFGMIILQWLIPDIPSELKDQIKREEYLTSELIIK 900 (947)
Q Consensus 821 t~cry~~~r~~p~~~~~~~~y~~~~~~W~~la~rl~fviv~EHvvl~ik~~i~~~IpdvP~~v~~~~~re~yl~~~~l~~ 900 (947)
--|+.+ | +.-++.++++||+.+++|+++.++|||.|.||+..+.|.++++++++.+
T Consensus 562 ---------~~~~~s------------~---~~~il~~V~~EH~~l~Lkflis~vipe~p~wva~~~~k~~~~~~e~~~k 617 (647)
T KOG2513|consen 562 ---------LWPLLS------------P---ENAILIIVILEHVLLLLKFLISSVIPESPRWVAAGIAKAEFQAREAFKK 617 (647)
T ss_pred ---------cCcccc------------h---HHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHhhhH
Confidence 001101 1 2224778899999999999999999999999999999999999999987
No 4
>KOG2514|consensus
Probab=99.62 E-value=1.7e-17 Score=195.41 Aligned_cols=526 Identities=10% Similarity=-0.109 Sum_probs=340.8
Q ss_pred ccCCCCCCCCCCCccEEEEeecCCCChHHHHHHHhHHHHHHHHHHHHHHHcCCEEEEEecceEEEEEEecChhhHHHHHH
Q psy5305 51 IDLGSGKTEEEEPLDFILVWAKPYNRREELEQEANHAEMKRNIFEKNLKKQGLILKEHHNGHLCFVTIYAPRSVLLTYAD 130 (947)
Q Consensus 51 ~~~g~~~~dg~r~iDyVLvy~~~~~~~~e~~~~~~~~~~~R~~Fe~~L~~~GL~lE~~~~~~~~FVkIhAP~~vL~r~AE 130 (947)
-+.++++.++.+.. +-+++.+.++.... +..++ .+.+|++-+.+..++..+++||+++..+..+|+
T Consensus 121 ~~~~~f~~~~sr~~-~~~f~~k~~~~~f~-----------~a~rs--~~ve~~l~rt~~~~~~~~~gi~~l~~~~~y~aa 186 (861)
T KOG2514|consen 121 EDEKSFTASSSRGK-EYQFIIKIDDTFFT-----------KAERS--RIVEPILPRTSFIEQLRRKGIRRLIASGVYEAA 186 (861)
T ss_pred cccccccccccCcc-eEEEEEecCchhhh-----------hhhhh--hhchhhcccccchhhhhhhchHHHHhhcceeee
Confidence 34567788888888 88888876544321 11122 556676666544478889999999999999999
Q ss_pred HhcccccCccCCCCCCCcccchhhhhhHHHHHHHhhcccccCCCCCCCCCCccccccccccccc-cc---cCCCCCCCHH
Q psy5305 131 IMKLRMPMKSYDDTDGSTKKFNILSEAANFVVLFIKLCIAIEPANMPMKKLPLTAQYTKAKHYL-FD---EENSDFLSPP 206 (947)
Q Consensus 131 ~L~Lkmplk~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~t~~F~~~k~~~-f~---~~~~~fft~a 206 (947)
...-.++.+... ..+.. +.-.+. . +.+.+....+ .+...-+.|--++..+ |. -....++.++
T Consensus 187 ~plh~g~~~~~~-------~~~~~--r~~lyq---~-wa~~~~wyk~-qpl~~ir~yfg~ki~lyfawlg~yt~~l~~~a 252 (861)
T KOG2514|consen 187 FPLHDGEYKAMQ-------GGSVD--RYLLYQ---L-WANWERWYKF-QPLDLIRKYFGEKIALYFAWLGTYTTMLWPAS 252 (861)
T ss_pred eeccccCccccc-------ccchh--HHHHHh---c-ccccCccccc-ChHHHHHHhhhHHHHHHHHHHHHHHHhhhhHH
Confidence 988877773211 11110 000011 0 2222221111 1111111111122222 22 3456789999
Q ss_pred HHHHHHHHHHhcCCCcccCccccccccccccccCceeeeeecCCCCCCCCC--C---CcchhHHHHHHhhcccccccCCC
Q psy5305 207 SRSLIIDFILSRQSFTANNKDLANVGIQRLIEDGIYKAAYPLHDGDWATGD--P---EKSLRYSLYKEWAHLRNWIKNQP 281 (947)
Q Consensus 207 eR~rIv~~iL~~~~~~~~~~~~~~~gI~~Ll~~gv~~a~fPLHD~~~~~~~--~---~~~~R~~L~~~Wa~~~~~~~~QP 281 (947)
-+.+||+.....+.++. ...+-..+. +...+++|||| ..+... + ..+.+..+...|+.+..|+..++
T Consensus 253 i~glivf~yg~~~~~~~-----~~~~~~c~~--~~~~t~cplcd-~c~~~~l~~sc~~~~~~~lfdn~~tvffavfms~w 324 (861)
T KOG2514|consen 253 IVGLIVFIYGLATLENA-----PPSKEICKV--FTNITMCPLCD-MCNYWRLSESCVTAKVTYLFDNPSTVFFAVFMSIW 324 (861)
T ss_pred HHHHHHHHHHHHHHhcC-----CchHHHHhh--cCcEEeccccc-cccceehHHHHHhhHHHHHhccchHHHHHHHHHHh
Confidence 99999999999888732 223333333 77789999999 443322 1 34467888889999999999999
Q ss_pred hhHHHhhcCceeehhHHHHHHHHHHHHHHHHHHHHHHhhhhccccCCCchhhhccCCCceeeccCccCCCCccccccccc
Q psy5305 282 ADQIKEYLGVKCAFYFVWLGFYTHMLIPASILGLTVFLYGVFTLNNDSLSRDICNKTLNIIMCPLCDRTCDYWKLSDTCK 361 (947)
Q Consensus 282 Ld~Ir~YFGEKIA~YFAwLgfYT~~Li~pAi~Gl~~~l~g~~~~~~~~~~~eiC~~~~~~~mcP~c~~~c~~w~l~~~c~ 361 (947)
.+..++++|+|++.|++|.+.++..+..++..|.....|+. +.+|+ |+.=.++++|.
T Consensus 325 at~f~e~wkr~~~vl~~~wdl~~~~~~ee~~~~~~~~~~~~---------~~~~~--------------~~~~~~~~~~~ 381 (861)
T KOG2514|consen 325 ATVFLELWKRKQSVLTYRWDLTGFEEEEEDRPEQFEAKYET---------DPITN--------------EEDEPISPWRD 381 (861)
T ss_pred HHHHHHHHHhhheeeeeeeccccccccccccchhhhhhhee---------ecccC--------------CCCcccCcHHH
Confidence 99999999999999999999999999999999999988863 11121 44445667788
Q ss_pred cceeccccCCCcchhHHHHHHHHHHHHHHHHHHHhhhhhcccCCcccccccccCCcccccccccccccceeecCCCCcee
Q psy5305 362 SARVTYLFDNTFSVIFAFLMSIWAVLFLESWKRYSAAITHRWGLTHFTLEAEHPRPSYLARLSHLKRTKTIMNIITGTEE 441 (947)
Q Consensus 362 ~~~~~~lfDn~~t~~faif~~lWat~FlE~WKRr~a~la~~Wg~~~~~~~~e~~Rp~f~g~~~~~~~~~~~~npvTg~~e 441 (947)
.+...+++++..+..+|++++.|.++|++.|++..+-.+. ...++...++..++++...+ .....+|++-|+++
T Consensus 382 r~~~~l~~~~~v~f~iav~~~~~l~V~lyri~~~~a~~~~--~~~~~~~~~~at~~a~~in~----~~i~~L~~iy~~~a 455 (861)
T KOG2514|consen 382 RYIAMLASFSFVLFMIAVVFSAVLGVILYRISMVAALQCG--KFTTSHAWLSATATAVIINL----VVIMILNAIYSNLA 455 (861)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC--ccceehhhhHhHHHHHHHHH----HHHHHHHHHhhhHH
Confidence 9999999999999999999999999999999999998887 66565555566777776543 24567899999999
Q ss_pred ecCCccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccccccchhhhhhhHHHHHHHHHHHHHH
Q psy5305 442 PRAPFWIRWPTRILSFSVVLILIMCALATVVGVVLYRMSLYATLSLSHKADWMNSYGIVIIPFTAACINLVCIQILNLVY 521 (947)
Q Consensus 442 ~~~p~~kr~~r~l~s~~ivl~~i~lvi~~v~~v~v~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~v~I~il~~vY 521 (947)
++...+..-.+...+---++++|.++..+.....+|+++..-.......|. +...+.+...-..+--..+...-++
T Consensus 456 ~~lt~~e~prTe~~~ensl~~KiflfqfvN~yssifYVAFfkg~fvg~pg~----~~~~f~~~r~eeC~p~gCl~eLciQ 531 (861)
T KOG2514|consen 456 SRLTNLENPRTESEFENSLILKIFLFQFVNYYSSIFYIAFFKGRFVGYPGD----YVYLFGRYRNEECDPGGCLSELCIQ 531 (861)
T ss_pred HHHhhhcCccchhhhcchhHHHHHHHHHHHhcCceEEEEEEeceeccCCCC----cceecccceeccccccchHHHHHHH
Confidence 887776655555554444455555544333332222211111111111221 1222222222222223334445566
Q ss_pred HHHHHHHhccCCCCChHHHhhhHHHHHHHHHHhhhhhHHHHHHhhcccccCCCccchhhccccccccCCCCchhhHHHHH
Q psy5305 522 ARLATYMTEFEYLRTQTEFDESLAIKIYLFQFVNYYTSIFYIAFLKGKFIGYPAKYTRVFNLRQEECSPGGCFMELSIQL 601 (947)
Q Consensus 522 ~~lA~~LT~~ENhrT~~~ye~sli~K~FlF~FvN~y~sLFYiAF~~~~f~g~pg~y~~~~g~r~~~c~~~gC~~~L~~qL 601 (947)
-.++.-++..+|. +++....++.- +++||.+.=.+-+++ +..+.+.++++.+-++..+ |
T Consensus 532 l~iimlgKq~~nn-~~ev~~P~f~~--~~~~~~~~~~s~~~~-~~~~~~~~~w~~d~~L~p~--------~--------- 590 (861)
T KOG2514|consen 532 LAIIMLGKQIWNN-FMEVGLPKFWK--LIRQYKLKTEARVTI-DDDSANVERWEQDYHLQPM--------G--------- 590 (861)
T ss_pred HHHHHHHhhhhHH-HHHHHHHHHHH--HHHHHhhhccCCCcc-chhhhcccchhhccccCCc--------c---------
Confidence 6788889999999 88888888876 999999999999999 8788887777665544320 0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCchhhhhhhhhhhhhhhhhccccccCCCCCCCchhhhHHHHHhhc
Q psy5305 602 AVIMVGQQTFNSIVEMFIPYFWKLYNVFMITTGLSDDLSENQKNADLINLHELIRNSSLTSKSTTTTDPRAKQWLEDFKL 681 (947)
Q Consensus 602 ~~i~v~kQii~~~~E~~lP~l~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~d~~L 681 (947)
..|..-.++-.... .+.. +. ...
T Consensus 591 ----------------~~gL~~eylemi~q-~gFv----------------tl--------------------Fva---- 613 (861)
T KOG2514|consen 591 ----------------LLGLTPEYLEMILQ-FGFV----------------TL--------------------FVA---- 613 (861)
T ss_pred ----------------cccccHHHHHHHHH-hccc----------------hh--------------------hhh----
Confidence 11111111111110 0000 00 000
Q ss_pred cCCCCCCChhHHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHhhhhHHHHHhhc
Q psy5305 682 LDWGTRGLYPEYLEMVLQYGFVVLFVSAFPLAPLFALINNIFETRLDAQKFLKYY 736 (947)
Q Consensus 682 ~~~~~~~lf~DYlEmvIQFGyvtLFsaafPLAPl~ALlNNiiEiR~Da~Kl~~~~ 736 (947)
-| .+|++|-+|++++.|.+++..|++|+.+.+.++.|-+...
T Consensus 614 -------~F------pLaplfaLLnniieirlda~Kl~t~~rRpv~~r~~diG~W 655 (861)
T KOG2514|consen 614 -------AF------PLAPLFALLNNIIEIRLDAKKLVTQKRRPVAARAVDIGAW 655 (861)
T ss_pred -------hh------hhHHHHHHHHHHHhhhhhHHHHHHhhhcchhHHHhhhhhh
Confidence 01 1899999999999999999999999999999999988743
No 5
>PF02714 DUF221: Domain of unknown function DUF221; InterPro: IPR003864 This domain is found in a family of hypothetical transmembrane proteins none of which have any known function, the aligned region is at 538 residues at maximum length.; GO: 0016020 membrane
Probab=98.48 E-value=3.1e-05 Score=87.19 Aligned_cols=220 Identities=15% Similarity=0.235 Sum_probs=139.1
Q ss_pred hhhhhhhHHHHHHHHHHHHHHHHHHHHHhccCCCCChHHHhhhHHHHHHHHHHhhhhhHHHHHHhhcc---cccCCCccc
Q psy5305 501 IIPFTAACINLVCIQILNLVYARLATYMTEFEYLRTQTEFDESLAIKIYLFQFVNYYTSIFYIAFLKG---KFIGYPAKY 577 (947)
Q Consensus 501 ~~~~~~~il~~v~I~il~~vY~~lA~~LT~~ENhrT~~~ye~sli~K~FlF~FvN~y~sLFYiAF~~~---~f~g~pg~y 577 (947)
+.+++.+++-.+++.++|.+--.+-.++.++|.|.|.++.|.+...|.|.|+|+|.+.-.....-+.. .+...|+..
T Consensus 100 ~~~~i~~~lp~l~l~~~~~llp~ii~~ls~~e~~~s~S~~~~sv~~k~f~f~~~n~~lv~~l~~~~~~~~~~~~~~~~~i 179 (325)
T PF02714_consen 100 LLSLIQGILPSLLLSIFNALLPIIIRFLSKFEGHKSRSEVERSVLRKLFFFLFFNVFLVPSLAGTILSALKNIINNPGSI 179 (325)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhCcchH
Confidence 33455555556667777888888888999999999999999999999999999999854332211111 122234433
Q ss_pred hhhccccccccCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHhhcCCCCchhhhhhhhhhhhhhhhh
Q psy5305 578 TRVFNLRQEECSPGGCFMELSIQLAVIMVGQQTFNSIVEMFIP--YFWKLYNVFMITTGLSDDLSENQKNADLINLHELI 655 (947)
Q Consensus 578 ~~~~g~r~~~c~~~gC~~~L~~qL~~i~v~kQii~~~~E~~lP--~l~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~ 655 (947)
.+..+. .-| .-..-....++++-++....|.+-| ++...+++....+.
T Consensus 180 ~~~l~~----~lp-----~~s~ffi~~ii~~~~~~~~~~Ll~~~~l~~~~~~~~~~~~t--------------------- 229 (325)
T PF02714_consen 180 LQLLGN----FLP-----NSSNFFINYIILQAFIGSPLELLRPPPLIIYYIRRKFFSKT--------------------- 229 (325)
T ss_pred HHHHHH----Hhh-----hhhHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHHhcCCC---------------------
Confidence 332220 000 1111222233333333555555433 33333333321100
Q ss_pred ccccccCCCCCCCchhhhHHHHHhhccCCCCCCChhHHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHhhhhHHHHHhh
Q psy5305 656 RNSSLTSKSTTTTDPRAKQWLEDFKLLDWGTRGLYPEYLEMVLQYGFVVLFVSAFPLAPLFALINNIFETRLDAQKFLKY 735 (947)
Q Consensus 656 ~~~s~~~~~~~~~~~~~~~~~~d~~L~~~~~~~lf~DYlEmvIQFGyvtLFsaafPLAPl~ALlNNiiEiR~Da~Kl~~~ 735 (947)
+++..+.+ .+.++.+.-..|-++..=+-.+.+|+++.||.-.++++-=.+--=+|.+.+++.
T Consensus 230 ------------~r~~~~~~------~~~~~f~~~~~ya~~l~v~~i~l~ys~i~Plil~~~~~yf~l~y~v~ky~llyv 291 (325)
T PF02714_consen 230 ------------PRELNELY------TEPPPFDYGYQYAQMLLVFFIGLFYSPIAPLILPFGLVYFLLKYFVDKYNLLYV 291 (325)
T ss_pred ------------HHHHHHhc------CCCCCCcchHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHhheeee
Confidence 00000011 022334556789999998989999999999999999999999999999999999
Q ss_pred ccCCCcccccccccHHHHHHHHHHHHHHHHHHHHHh
Q psy5305 736 YRRPVPHRATNIGIWFRVLDVVAKLAVISNAVLIAF 771 (947)
Q Consensus 736 ~RRP~p~ra~~IG~W~~iLe~l~~laVitN~~lIaf 771 (947)
++|+.. .. =..|..+++.+-+--++..+.++++
T Consensus 292 y~~~~e-s~--G~~~~~~~~~~~~~l~i~q~~~~g~ 324 (325)
T PF02714_consen 292 YRPKYE-SG--GRLWPTAFNRLLFGLVIFQFTMIGL 324 (325)
T ss_pred ccCCCC-CC--chHHHHHHHHHHHHHHHHHHHHHHh
Confidence 986552 22 2578888888888777778877764
No 6
>KOG1134|consensus
Probab=95.12 E-value=1.7 Score=54.41 Aligned_cols=210 Identities=12% Similarity=0.172 Sum_probs=127.3
Q ss_pred HHHHHHHHHHHHHHHHHHhccCCCCChHHHhhhHHHHHHHHHHhhhhhHHHH-HHhhccc--ccCCCccchhhccccccc
Q psy5305 511 LVCIQILNLVYARLATYMTEFEYLRTQTEFDESLAIKIYLFQFVNYYTSIFY-IAFLKGK--FIGYPAKYTRVFNLRQEE 587 (947)
Q Consensus 511 ~v~I~il~~vY~~lA~~LT~~ENhrT~~~ye~sli~K~FlF~FvN~y~sLFY-iAF~~~~--f~g~pg~y~~~~g~r~~~ 587 (947)
.++..++..+--.+-.+|+.||-|-|.++=|.+...|.|.|+++|.|..-.. -++...- +...|..--+.++
T Consensus 416 ~l~l~~~~~~lP~~l~~ls~~eG~~s~S~~e~~a~~k~~~F~~~nvFl~~~l~~sa~~~~~~~l~~p~~i~~~la----- 490 (728)
T KOG1134|consen 416 TLALVIFLALLPPFLRYLSKLEGLISRSEEERSALNKYYIFLLVNVFLVVTLSGSALRQLLSILSTPRLIPKLLA----- 490 (728)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCccchhHHHHHHHHhHHHHHHhhhHHHhhhhHHHHHHHHHHhcCHhHHHHHHh-----
Confidence 3444444555566778899999999999999999999999999999854322 1221110 0011211111111
Q ss_pred cCCCCchhhHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHhhcCCCCchhhhhhhhhhhhhhhhhccccccCCCC
Q psy5305 588 CSPGGCFMELSIQLAVIMVGQQTFNSIVEMF--IPYFWKLYNVFMITTGLSDDLSENQKNADLINLHELIRNSSLTSKST 665 (947)
Q Consensus 588 c~~~gC~~~L~~qL~~i~v~kQii~~~~E~~--lP~l~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~s~~~~~~ 665 (947)
+. +-+-+.-.....+++-..+...|.+ .|++...+++...++..+
T Consensus 491 ~~----lP~~a~Ff~~yii~~g~~g~~~ellrl~~Li~~~i~~~~~~~t~~----------------------------- 537 (728)
T KOG1134|consen 491 AA----LPKQASFFITYIITSGWAGFAGELLRLVPLIIYLLKKLFLKSTPR----------------------------- 537 (728)
T ss_pred hh----ChhhHHHHHHHHHHhccchhhHHHhcchhHHHHHHHHHHcccchh-----------------------------
Confidence 00 0011222344455566678888887 788877766655332110
Q ss_pred CCCchhhhHHHHHhhccCCCCCCChhHHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHhhhhHHHHHhhccCCCccccc
Q psy5305 666 TTTDPRAKQWLEDFKLLDWGTRGLYPEYLEMVLQYGFVVLFVSAFPLAPLFALINNIFETRLDAQKFLKYYRRPVPHRAT 745 (947)
Q Consensus 666 ~~~~~~~~~~~~d~~L~~~~~~~lf~DYlEmvIQFGyvtLFsaafPLAPl~ALlNNiiEiR~Da~Kl~~~~RRP~p~ra~ 745 (947)
+++++-. +...+..-..|--+.+=|-.....|++-|+-=.|+++-=.+--=+|.+.+.+.++.+. ..
T Consensus 538 -------~~~e~~~---p~~~~~~g~~yP~~~~~f~i~i~YsviaPlILpF~lvyF~l~y~vyr~ql~yvy~~~y---es 604 (728)
T KOG1134|consen 538 -------DREERYE---PLSSFYFGTIYPRILLIFTIGICYSVIAPLILPFGLVYFCLAYLVYRYQLIYVYNQKY---ES 604 (728)
T ss_pred -------hhhhhcC---CccccchhhhccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhhheeecccc---cc
Confidence 0111110 1000111112333444444445588899999888888888888899999999998333 67
Q ss_pred ccccHHHHHHHHHHHHHHHHHHHHHh
Q psy5305 746 NIGIWFRVLDVVAKLAVISNAVLIAF 771 (947)
Q Consensus 746 ~IG~W~~iLe~l~~laVitN~~lIaf 771 (947)
..|-|-.+..-+...=++....++++
T Consensus 605 ~g~~wp~ih~~ii~~l~l~ql~l~gl 630 (728)
T KOG1134|consen 605 GGRFWPDIHRRIIFGLILFQLILFGL 630 (728)
T ss_pred cccchHHHHHHHHHHHHHHHHHHHHH
Confidence 78899999988888777877777765
No 7
>COG5594 Uncharacterized integral membrane protein [Function unknown]
Probab=88.15 E-value=32 Score=43.25 Aligned_cols=61 Identities=13% Similarity=0.219 Sum_probs=46.4
Q ss_pred chhhhhhhHHHHHHHHHHHHHHHHHHHHHhccCCCCChHHHhhhHHHHHHHHHHhhhhhHHHHHH
Q psy5305 500 VIIPFTAACINLVCIQILNLVYARLATYMTEFEYLRTQTEFDESLAIKIYLFQFVNYYTSIFYIA 564 (947)
Q Consensus 500 ~~~~~~~~il~~v~I~il~~vY~~lA~~LT~~ENhrT~~~ye~sli~K~FlF~FvN~y~sLFYiA 564 (947)
.++.++|+++..+++.+ --.+-+||+.|+---|-++-|....-|.|.|+|+|.|+.....+
T Consensus 463 iltglLptv~~~~l~~i----vP~fir~Ls~~qG~~S~se~E~~~~~k~~~f~fv~~FlV~Tl~s 523 (827)
T COG5594 463 ILTGLLPTVALSLLMSI----VPYFIRWLSYMQGLVSYSEEEIYVQNKYFAFLFVNLFLVVTLAS 523 (827)
T ss_pred HHHhhhhHHHHHHHHHH----hHHHHHHHHHhcCccchHHHHHHHHhhhhhheeeeehheeeehh
Confidence 34445555555444444 44555788999999999999999999999999999998766665
No 8
>PF02532 PsbI: Photosystem II reaction centre I protein (PSII 4.8 kDa protein); InterPro: IPR003686 Oxygenic photosynthesis uses two multi-subunit photosystems (I and II) located in the cell membranes of cyanobacteria and in the thylakoid membranes of chloroplasts in plants and algae. Photosystem II (PSII) has a P680 reaction centre containing chlorophyll 'a' that uses light energy to carry out the oxidation (splitting) of water molecules, and to produce ATP via a proton pump. Photosystem I (PSI) has a P700 reaction centre containing chlorophyll that takes the electron and associated hydrogen donated from PSII to reduce NADP+ to NADPH. Both ATP and NADPH are subsequently used in the light-independent reactions to convert carbon dioxide to glucose using the hydrogen atom extracted from water by PSII, releasing oxygen as a by-product. PSII is a multisubunit protein-pigment complex containing polypeptides both intrinsic and extrinsic to the photosynthetic membrane [, ]. Within the core of the complex, the chlorophyll and beta-carotene pigments are mainly bound to the antenna proteins CP43 (PsbC) and CP47 (PsbB), which pass the excitation energy on to the reaction centre proteins D1 (Qb, PsbA) and D2 (Qa, PsbD) that bind all the redox-active cofactors involved in the energy conversion process. The PSII oxygen-evolving complex (OEC) oxidises water to provide protons for use by PSI, and consists of OEE1 (PsbO), OEE2 (PsbP) and OEE3 (PsbQ). The remaining subunits in PSII are of low molecular weight (less than 10 kDa), and are involved in PSII assembly, stabilisation, dimerisation, and photo-protection []. This family represents the low molecular weight transmembrane protein PsbI, which is tightly associated with the D1/D2 heterodimer in PSII. The function of PsbI is unknown, but it may be involved in the assembly, dimerisation or stabilisation of PSII dimers [].; GO: 0015979 photosynthesis, 0009523 photosystem II, 0009539 photosystem II reaction center, 0016020 membrane; PDB: 3A0H_i 3ARC_I 3A0B_i 3BZ2_I 3PRQ_I 3KZI_I 3PRR_I 2AXT_i 4FBY_I 1S5L_i ....
Probab=66.95 E-value=12 Score=28.40 Aligned_cols=31 Identities=29% Similarity=0.637 Sum_probs=26.5
Q ss_pred HHHHHHHHHHhhhhhHHHHHHhhcccccCCC
Q psy5305 544 LAIKIYLFQFVNYYTSIFYIAFLKGKFIGYP 574 (947)
Q Consensus 544 li~K~FlF~FvN~y~sLFYiAF~~~~f~g~p 574 (947)
+++|+++...|..|.+||.-+|...+-.-.|
T Consensus 2 ~~LK~~Vy~vV~ffv~LFifGflsnDp~RnP 32 (36)
T PF02532_consen 2 LTLKIFVYTVVIFFVSLFIFGFLSNDPGRNP 32 (36)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTCTTSSS
T ss_pred eEEEEeehhhHHHHHHHHhccccCCCCCCCC
Confidence 6899999999999999999999887644334
No 9
>COG1377 FlhB Flagellar biosynthesis pathway, component FlhB [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=49.24 E-value=2.7e+02 Score=32.37 Aligned_cols=23 Identities=26% Similarity=0.469 Sum_probs=15.9
Q ss_pred cccccccccCCcccccccccccccceeecCCCCc
Q psy5305 406 THFTLEAEHPRPSYLARLSHLKRTKTIMNIITGT 439 (947)
Q Consensus 406 ~~~~~~~e~~Rp~f~g~~~~~~~~~~~~npvTg~ 439 (947)
.++.-..|..+|+|. ++||+.|-
T Consensus 112 ~g~~fs~e~ikP~~~-----------kinP~~G~ 134 (363)
T COG1377 112 VGFLFSTEALKPKFS-----------KLNPIKGL 134 (363)
T ss_pred hCccccccccCCccc-----------ccChhHHH
Confidence 333333578899886 89999883
No 10
>PRK02655 psbI photosystem II reaction center I protein I; Provisional
Probab=38.95 E-value=7.1 Score=29.81 Aligned_cols=27 Identities=30% Similarity=0.604 Sum_probs=23.9
Q ss_pred HHHHHHHHHHhhhhhHHHHHHhhcccc
Q psy5305 544 LAIKIYLFQFVNYYTSIFYIAFLKGKF 570 (947)
Q Consensus 544 li~K~FlF~FvN~y~sLFYiAF~~~~f 570 (947)
+++|+|+...|..|.+||.-+|...+-
T Consensus 2 ltLKi~Vy~vV~ffvsLFiFGflsnDP 28 (38)
T PRK02655 2 LALKISVYIVVFFFVGLFVFGFLSSDP 28 (38)
T ss_pred eeEEeeehhhHHHHHHHHHcccCCCCC
Confidence 578999999999999999999988663
No 11
>CHL00024 psbI photosystem II protein I
Probab=37.83 E-value=7.4 Score=29.47 Aligned_cols=28 Identities=25% Similarity=0.629 Sum_probs=24.2
Q ss_pred HHHHHHHHHHhhhhhHHHHHHhhccccc
Q psy5305 544 LAIKIYLFQFVNYYTSIFYIAFLKGKFI 571 (947)
Q Consensus 544 li~K~FlF~FvN~y~sLFYiAF~~~~f~ 571 (947)
+++|+|+...|..|.+||.-+|...+-.
T Consensus 2 l~LKi~Vy~vV~ffvsLFifGFlsnDp~ 29 (36)
T CHL00024 2 LTLKLFVYTVVIFFVSLFIFGFLSNDPG 29 (36)
T ss_pred eeEEeeehhHHHHHHHHHHccccCCCCC
Confidence 5789999999999999999999886643
No 12
>TIGR00811 sit silicon transporter. Marine diatoms such as Cylindrotheca fusiformis encode at least six silicon transport protein homologues which exhibit similar size and topology. One characterized member of the family (Sit1) functions in the energy-dependent uptake of either Silicic acid [Si(OH)4] or Silicate [Si(OH)3O-] by a Na+ symport mechanism. The system is found in marine diatoms which make their "glass houses" out of silicon.
Probab=23.20 E-value=7.3e+02 Score=29.78 Aligned_cols=34 Identities=21% Similarity=0.239 Sum_probs=29.2
Q ss_pred hhcCceeehhHHHHHHHHHHHHHHHHHHHHHHhh
Q psy5305 287 EYLGVKCAFYFVWLGFYTHMLIPASILGLTVFLY 320 (947)
Q Consensus 287 ~YFGEKIA~YFAwLgfYT~~Li~pAi~Gl~~~l~ 320 (947)
+-||-.=+.=|.||++=..+.++..++|-+.|=+
T Consensus 125 nVfGlpD~~q~iFL~~Gl~m~v~TtIlgqLt~Qv 158 (545)
T TIGR00811 125 EVLGLPEILTDIFLGSGIAMVLTVVTIGQLTAQV 158 (545)
T ss_pred CeecCCHHHHHHHHhhhhHHHHHHHHHHHHHHHH
Confidence 4588888888999999999999999999988754
No 13
>PF07810 TMC: TMC domain; InterPro: IPR012496 These sequences are similar to a region conserved amongst various protein products of the transmembrane channel-like (TMC) gene family, such as Transmembrane channel-like protein 3 (Q7TN63 from SWISSPROT) and EVIN2 (Q8IU68 from SWISSPROT) - this region is termed the TMC domain []. Mutations in these genes are implicated in a number of human conditions, such as deafness and epidermodysplasia verruciformis []. TMC proteins are thought to have important cellular roles, and may be modifiers of ion channels or transporters []. ; GO: 0016021 integral to membrane
Probab=23.04 E-value=6.9e+02 Score=24.12 Aligned_cols=52 Identities=15% Similarity=0.191 Sum_probs=36.4
Q ss_pred CChhHHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHhhhhHHHHHhhccCC
Q psy5305 688 GLYPEYLEMVLQYGFVVLFVSAFPLAPLFALINNIFETRLDAQKFLKYYRRP 739 (947)
Q Consensus 688 ~lf~DYlEmvIQFGyvtLFsaafPLAPl~ALlNNiiEiR~Da~Kl~~~~RRP 739 (947)
++-+.-++++--=|.+=+-+--.||-|+++.+-+++-.-+..+-+.+.+|.|
T Consensus 53 ~i~~nvL~liY~Qtl~WiG~ffsPlLP~i~~ik~~i~FYvKk~sll~~c~p~ 104 (111)
T PF07810_consen 53 DIPKNVLDLIYNQTLVWIGMFFSPLLPAINVIKLFILFYVKKFSLLYNCQPP 104 (111)
T ss_pred cHhhhHHHHHHcchhhhhhHHhchhHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 4444455555222333333445699999999999999999999999887764
No 14
>COG4890 Predicted outer membrane lipoprotein [Function unknown]
Probab=20.97 E-value=1.1e+02 Score=23.24 Aligned_cols=21 Identities=33% Similarity=0.700 Sum_probs=15.5
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHh
Q psy5305 295 FYFVWLGFYTHMLIPASILGLTVFL 319 (947)
Q Consensus 295 ~YFAwLgfYT~~Li~pAi~Gl~~~l 319 (947)
.||||+- -+..++.+|++--+
T Consensus 2 WYFaWiL----G~lLAcAFgiinAl 22 (37)
T COG4890 2 WYFAWIL----GLLLACAFGIINAL 22 (37)
T ss_pred hhHHHHH----HHHHHHHHHHHHHH
Confidence 5999963 47778888887644
Done!