Query psy5305
Match_columns 947
No_of_seqs 246 out of 614
Neff 6.4
Searched_HMMs 13730
Date Fri Aug 16 23:10:39 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy5305.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/5305hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2axti1 f.23.37.1 (I:1-35) Pho 76.2 1.4 0.0001 30.0 3.8 27 544-570 2-28 (35)
2 d1ewsa_ g.9.1.1 (A:) Alpha-def 7.2 54 0.0039 21.0 0.4 15 347-361 5-20 (32)
3 d2fmpa3 d.218.1.2 (A:149-335) 5.3 2.6E+02 0.019 25.2 4.5 62 53-121 30-94 (187)
4 d1zaka2 g.41.2.1 (A:128-158) M 5.3 1.1E+02 0.0082 20.1 1.2 9 432-440 3-11 (31)
5 d1hara_ e.8.1.2 (A:) HIV-1 rev 4.4 2E+02 0.014 26.9 2.9 32 64-104 184-215 (216)
6 d2idob1 a.237.1.1 (B:2-76) Hom 3.7 70 0.0051 25.1 -1.0 17 279-296 43-59 (75)
7 d1jjcb4 d.58.13.1 (B:682-785) 3.6 3.9E+02 0.028 21.6 3.9 50 51-105 49-98 (104)
8 d2cura2 g.39.1.3 (A:8-32) Four 3.6 83 0.0061 19.7 -0.5 9 828-836 15-23 (26)
9 d2d8za1 g.39.1.3 (A:8-32) Four 3.5 92 0.0067 19.5 -0.3 9 828-836 15-23 (26)
10 d1jb0m_ f.23.19.1 (M:) Subunit 3.5 5.6E+02 0.041 16.2 3.5 17 464-480 10-26 (31)
No 1
>d2axti1 f.23.37.1 (I:1-35) Photosystem II reaction center protein I, PsbI {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=76.16 E-value=1.4 Score=30.00 Aligned_cols=27 Identities=26% Similarity=0.588 Sum_probs=24.7
Q ss_pred HHHHHHHHHHhhhhhHHHHHHhhcccc
Q psy5305 544 LAIKIYLFQFVNYYTSIFYIAFLKGKF 570 (947)
Q Consensus 544 li~K~FlF~FvN~y~sLFYiAF~~~~f 570 (947)
+++|+++..-|..|.+||.-+|...+-
T Consensus 2 ltLKi~Vy~vV~fFv~lFiFGFLSnDP 28 (35)
T d2axti1 2 ETLKITVYIVVTFFVLLFVFGFLSGDP 28 (35)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHTTCT
T ss_pred ceEEEehhhHHHHHHHHHHHhhccCCC
Confidence 689999999999999999999988763
No 2
>d1ewsa_ g.9.1.1 (A:) Alpha-defensin rk-1 {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]}
Probab=7.21 E-value=54 Score=20.97 Aligned_cols=15 Identities=40% Similarity=1.285 Sum_probs=11.9
Q ss_pred ccCCCCcccccc-ccc
Q psy5305 347 CDRTCDYWKLSD-TCK 361 (947)
Q Consensus 347 c~~~c~~w~l~~-~c~ 361 (947)
|.+.|+.|+.-| +|.
T Consensus 5 ckkycdpwevidgscg 20 (32)
T d1ewsa_ 5 CKKYCDPWEVIDGSCG 20 (32)
T ss_dssp EESSCCTTEEEEECCS
T ss_pred cccccChhheeccccc
Confidence 778999999875 675
No 3
>d2fmpa3 d.218.1.2 (A:149-335) DNA polymerase beta, catalytic (31 kD) fragment {Human (Homo sapiens) [TaxId: 9606]}
Probab=5.29 E-value=2.6e+02 Score=25.20 Aligned_cols=62 Identities=15% Similarity=0.117 Sum_probs=37.2
Q ss_pred CCCCCC--CCCCCccEEEEeecCCCChHHHHHHHhHHHHHHHHHHHHHHHcCCEEEE-EecceEEEEEEecC
Q psy5305 53 LGSGKT--EEEEPLDFILVWAKPYNRREELEQEANHAEMKRNIFEKNLKKQGLILKE-HHNGHLCFVTIYAP 121 (947)
Q Consensus 53 ~g~~~~--dg~r~iDyVLvy~~~~~~~~e~~~~~~~~~~~R~~Fe~~L~~~GL~lE~-~~~~~~~FVkIhAP 121 (947)
+|++.+ ..-..||+|++......+..... . ....+.+.|.+.|...+. +.....++..+..|
T Consensus 30 ~GSyRRgk~~~gDIDilIt~~~~~~~~~~~~------~-~l~~v~~~l~~~~~i~~~l~~g~~k~~g~~~l~ 94 (187)
T d2fmpa3 30 CGSFRRGAESSGDMDVLLTHPSFTSESTKQP------K-LLHQVVEQLQKVHFITDTLSKGETKFMGVCQLP 94 (187)
T ss_dssp CHHHHTTCSEESSEEEEEECTTBCSSCBCSS------C-HHHHHHHHHHHTTSEEEEEEECSSEEEEEECCC
T ss_pred eeecccCCcccCCccEEEecCCccchhhhhh------H-HHHHHHHHHHHCCcchhhhhcCCceEEEEEEec
Confidence 466654 23357999998765433221100 1 345689999999999886 44444455544444
No 4
>d1zaka2 g.41.2.1 (A:128-158) Microbial and mitochondrial ADK, insert "zinc finger" domain {Maize (Zea mays) [TaxId: 4577]}
Probab=5.29 E-value=1.1e+02 Score=20.12 Aligned_cols=9 Identities=22% Similarity=0.357 Sum_probs=7.8
Q ss_pred eecCCCCce
Q psy5305 432 IMNIITGTE 440 (947)
Q Consensus 432 ~~npvTg~~ 440 (947)
++||+||+.
T Consensus 3 R~DP~TG~i 11 (31)
T d1zaka2 3 RLDPVTGKI 11 (31)
T ss_dssp EECTTTCCE
T ss_pred cCCCCCCcE
Confidence 789999975
No 5
>d1hara_ e.8.1.2 (A:) HIV-1 reverse transcriptase {Human immunodeficiency virus type 1 [TaxId: 11676]}
Probab=4.43 E-value=2e+02 Score=26.94 Aligned_cols=32 Identities=22% Similarity=0.214 Sum_probs=20.0
Q ss_pred ccEEEEeecCCCChHHHHHHHhHHHHHHHHHHHHHHHcCCE
Q psy5305 64 LDFILVWAKPYNRREELEQEANHAEMKRNIFEKNLKKQGLI 104 (947)
Q Consensus 64 iDyVLvy~~~~~~~~e~~~~~~~~~~~R~~Fe~~L~~~GL~ 104 (947)
+|=+|||.+.+ .+| |.+ .-++..+.|+++||.
T Consensus 184 lDDIlI~S~~~--~ee------H~~-~l~~vl~~L~~~Glt 215 (216)
T d1hara_ 184 MDDLYVGSDLA--IGA------HRT-KIEELRQHLLRWGLT 215 (216)
T ss_dssp TTEEEEEESSC--HHH------HHH-HHHHHHHHHHHTTCC
T ss_pred CceEEEccCCC--HHH------HHH-HHHHHHHHHHHcCCC
Confidence 47778876432 111 223 345688999999995
No 6
>d2idob1 a.237.1.1 (B:2-76) Homolog of theta (HOT) {Bacteriophage P1 [TaxId: 10678]}
Probab=3.67 E-value=70 Score=25.12 Aligned_cols=17 Identities=24% Similarity=0.641 Sum_probs=13.6
Q ss_pred CCChhHHHhhcCceeehh
Q psy5305 279 NQPADQIKEYLGVKCAFY 296 (947)
Q Consensus 279 ~QPLd~Ir~YFGEKIA~Y 296 (947)
.|| ++.|+||-|++..|
T Consensus 43 eQP-e~LR~yF~eRL~~y 59 (75)
T d2idob1 43 EQP-ENLRTYFMERLRHY 59 (75)
T ss_dssp HSC-GGGHHHHHHHHHHH
T ss_pred hCh-HHHHHHHHHHHHHH
Confidence 477 66799999998776
No 7
>d1jjcb4 d.58.13.1 (B:682-785) Phenylalanyl-tRNA synthetase {Thermus thermophilus [TaxId: 274]}
Probab=3.64 E-value=3.9e+02 Score=21.55 Aligned_cols=50 Identities=22% Similarity=0.276 Sum_probs=32.7
Q ss_pred ccCCCCCCCCCCCccEEEEeecCCCChHHHHHHHhHHHHHHHHHHHHHHHcCCEE
Q psy5305 51 IDLGSGKTEEEEPLDFILVWAKPYNRREELEQEANHAEMKRNIFEKNLKKQGLIL 105 (947)
Q Consensus 51 ~~~g~~~~dg~r~iDyVLvy~~~~~~~~e~~~~~~~~~~~R~~Fe~~L~~~GL~l 105 (947)
++.|-.-.+|++++=|=++|+..+..-.+.+- +...+...+.|++.|.++
T Consensus 49 vy~g~~~~~gkkS~~~r~~~q~~~kTLtd~eV-----~~~~~~i~~~l~~~~a~l 98 (104)
T d1jjcb4 49 LYQGPPLPEGHKSLAFHLRFRHPKRTLRDEEV-----EEAVSRVAEALRARGFGL 98 (104)
T ss_dssp EECSTTSCTTEEEEEEEEEECCSSSCCCHHHH-----HHHHHHHHHHHHTTTCBC
T ss_pred EEcCCCCCCCcEEEEEEEEEeCCCCCCCHHHH-----HHHHHHHHHHHHHcCCEe
Confidence 34454455788889999999887653322222 115567888898888765
No 8
>d2cura2 g.39.1.3 (A:8-32) Four and a half LIM domains protein 1, FHL-1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=3.60 E-value=83 Score=19.69 Aligned_cols=9 Identities=33% Similarity=1.195 Sum_probs=7.1
Q ss_pred cCCCCCCCC
Q psy5305 828 YRNPPWFEP 836 (947)
Q Consensus 828 ~r~~p~~~~ 836 (947)
|++.|||..
T Consensus 15 Y~~qPWH~e 23 (26)
T d2cura2 15 YQDQPWHAD 23 (26)
T ss_dssp ETTEEECTT
T ss_pred ecCCcchhh
Confidence 888898764
No 9
>d2d8za1 g.39.1.3 (A:8-32) Four and a half LIM domains protein 2, FHL2 {Human (Homo sapiens) [TaxId: 9606]}
Probab=3.50 E-value=92 Score=19.49 Aligned_cols=9 Identities=44% Similarity=1.317 Sum_probs=7.0
Q ss_pred cCCCCCCCC
Q psy5305 828 YRNPPWFEP 836 (947)
Q Consensus 828 ~r~~p~~~~ 836 (947)
||+.|||..
T Consensus 15 Y~~~PWH~e 23 (26)
T d2d8za1 15 YREQPWHKE 23 (26)
T ss_dssp SSSSEEETT
T ss_pred ecCCcchhh
Confidence 888888754
No 10
>d1jb0m_ f.23.19.1 (M:) Subunit XII of photosystem I reaction centre, PsaM {Synechococcus elongatus [TaxId: 32046]}
Probab=3.46 E-value=5.6e+02 Score=16.22 Aligned_cols=17 Identities=24% Similarity=0.475 Sum_probs=11.0
Q ss_pred HHHHHHHHHHHHHHHHH
Q psy5305 464 IMCALATVVGVVLYRMS 480 (947)
Q Consensus 464 i~lvi~~v~~v~v~r~~ 480 (947)
++++|+.+=|+..+|++
T Consensus 10 valvial~pg~lafrla 26 (31)
T d1jb0m_ 10 VALVIALLPAVLAFRLS 26 (31)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 45566666777777744
Done!