RPS-BLAST 2.2.26 [Sep-21-2011]

Database: CDD.v3.10 
           44,354 sequences; 10,937,602 total letters

Searching..................................................done

Query= psy5305
         (947 letters)



>gnl|CDD|218140 pfam04547, Anoctamin, Calcium-activated chloride channel.  The
           family carries eight putative transmembrane domains,
           and, although it has no similarity to other known
           channel proteins, it is clearly a calcium-activated
           ionic channel. It is expressed in various secretory
           epithelia, the retina and sensory neurons, and mediates
           receptor-activated chloride currents in diverse
           physiological processes.
          Length = 449

 Score =  418 bits (1078), Expect = e-137
 Identities = 175/490 (35%), Positives = 248/490 (50%), Gaps = 94/490 (19%)

Query: 285 IKEYLGVKCAFYFVWLGFYTHMLIPASILGLTVFLYGVFTLNNDSLSRDICNKTLNIIMC 344
           I+ Y G K A YF +LGFYT ML+P ++LGL  FLYG  +                    
Sbjct: 1   IRSYFGEKIALYFAFLGFYTKMLLPPAVLGLICFLYGGLS-------------------- 40

Query: 345 PLCDRTCDYWKLSDTCKSARVTYLFDNTFSVIFAFLMSIWAVLFLESWKRYSAAITHRWG 404
                                T+LFDN F+VIFA  M +W+ LFLE WKR  + + +RWG
Sbjct: 41  ---------------------THLFDNPFTVIFAIFMILWSTLFLEFWKRKQSELAYRWG 79

Query: 405 LTHFTLEAEHPRPSYLARLSHLKRTKTIMNIITGTEEPRAPFWIRWPTRILSFSVVLILI 464
           +  F  E E PRP +          +  ++ ITG  EP  P W R   ++LS  VVL+ I
Sbjct: 80  VLGFEEEQEEPRPEFKG-------DEIEIDPITGELEPYYPPWKRLLRQLLSIPVVLLFI 132

Query: 465 MCALATVVGVVLYRMSLYATLSLSHKADWMNSYGIVIIPFTAACINLVCIQILNLVYARL 524
              +  ++G+ + R+ L    S         S+   +  F  A +N V I ILN +Y ++
Sbjct: 133 GLVIGIIIGIFILRIFLSEVYS-------GPSFKQSLESFLPAILNSVIILILNFIYEKV 185

Query: 525 ATYMTEFEYLRTQTEFDESLAIKIYLFQFVNYYTSIFYIAFLKGKFIGYPAKYTRVFNLR 584
           AT +T++E  RTQ+E++ SL +K++LFQFVN Y+ +FYIAF KG F GY           
Sbjct: 186 ATKLTDWENHRTQSEYENSLILKVFLFQFVNSYSPLFYIAFFKGPFGGY----------- 234

Query: 585 QEECSPGGCFMELSIQLAVIMVGQQTFNSIVEMFIPYFWKLYNVFMITTGLSDDLSENQK 644
              C  GGC  EL  QL  IM+ +Q  N+I E+ +PY  K                    
Sbjct: 235 ---CDFGGCLEELKYQLITIMITKQIINNITEVVLPYLKKKIR----------------- 274

Query: 645 NADLINLHELIRNSSLTSKSTTTTDPRAKQWLEDFKLLDWGTRGLYPEYLEMVLQYGFVV 704
                   +         +     +   ++   + +L  +   GL+ +YLEMV+Q+G++ 
Sbjct: 275 --------KKKIKKKKEKEKKPEENEILERIENESELPPYDVFGLFDDYLEMVIQFGYLT 326

Query: 705 LFVSAFPLAPLFALINNIFETRLDAQKFLKYYRRPVPHRATNIGIWFRVLDVVAKLAVIS 764
           LF +AFPLAPL ALINNI E R DA K    +RRPVP RA +IG W  +L++++ L+VI+
Sbjct: 327 LFSAAFPLAPLLALINNIIEIRSDAFKLCYEFRRPVPQRADSIGPWLDILELLSWLSVIT 386

Query: 765 NAVLIAFTSN 774
           NA LIAFTS 
Sbjct: 387 NAGLIAFTST 396



 Score = 54.9 bits (133), Expect = 1e-07
 Identities = 20/48 (41%), Positives = 32/48 (66%)

Query: 845 WYYWKLLAARLGFIVVFQNVVSFGMIILQWLIPDIPSELKDQIKREEY 892
           +    LLAARL F ++ ++VV     ++ WLIPDIP  ++ ++KRE+Y
Sbjct: 402 YLNDHLLAARLLFFLILEHVVLLLKFLIAWLIPDIPEWVRIKLKREKY 449


>gnl|CDD|140204 PTZ00176, PTZ00176, erythrocyte membrane protein 1 (PfEMP1);
            Provisional.
          Length = 1317

 Score = 32.3 bits (73), Expect = 1.7
 Identities = 18/66 (27%), Positives = 30/66 (45%), Gaps = 6/66 (9%)

Query: 5    RKYLKASGTDEEDDIFFDVHSHDGTA------EVDHNHTGPTGSPKHETSISIDLGSGKT 58
            + YL   G  +E+   F   + D T+      E+D N     GSPK++T I + L   K 
Sbjct: 951  KTYLYVEGDTDEEKYMFMSDTTDITSSESEYEEMDINDIYVPGSPKYKTLIEVVLEPSKR 1010

Query: 59   EEEEPL 64
            + +  +
Sbjct: 1011 DTQNDI 1016


>gnl|CDD|100796 PRK01156, PRK01156, chromosome segregation protein; Provisional.
          Length = 895

 Score = 31.8 bits (72), Expect = 1.9
 Identities = 18/72 (25%), Positives = 31/72 (43%), Gaps = 6/72 (8%)

Query: 876 IPDIPSELKDQIKREEYLTSELIIKHETKRATAKQSKHDYRRTKSTANLIDSPSSLTSQH 935
           + DI  ++ D  KR+EYL SE I K   +    + ++ D    K         + L  +H
Sbjct: 492 VKDIDEKIVDLKKRKEYLESEEINKSINEYNKIESARADLEDIK------IKINELKDKH 545

Query: 936 EEIETASDEKTS 947
           ++ E   +   S
Sbjct: 546 DKYEEIKNRYKS 557


>gnl|CDD|213367 cd12833, ZntB-like_1, Salmonella typhimurium Zn2+ transporter
           ZntB-like subgroup.  A bacterial subgroup belonging to
           the Escherichia coli CorA-Salmonella typhimurium
           ZntB_like family (EcCorA_ZntB-like) of the MIT
           superfamily of essential membrane proteins involved in
           transporting divalent cations (uptake or efflux) across
           membranes. This subgroup includes the Zn2+ transporter
           Salmonella typhimurium ZntB which mediates the efflux of
           Zn2+ (and Cd2+). Structures of the intracellular domain
           of Vibrio parahaemolyticus and Salmonella typhimurium
           ZntB form funnel-shaped homopentamers, the tip of the
           funnel is formed from two C-terminal transmembrane (TM)
           helices from each monomer, and the large opening of the
           funnel from the N-terminal cytoplasmic domains. The GMN
           signature motif of the MIT superfamily occurs just after
           TM1, mutation within this motif is known to abolish Mg2+
           transport through Salmonella typhimurium CorA, and
           Mrs2p. Natural variants such as GVN and GIN, which occur
           in proteins belonging to this subfamily, may be
           associated with the transport of different divalent
           cations, such as zinc and cadmium. The functional
           diversity of MIT transporters may also be due to minor
           structural differences regulating gating, substrate
           selection, and transport.
          Length = 290

 Score = 30.5 bits (70), Expect = 4.3
 Identities = 12/49 (24%), Positives = 19/49 (38%), Gaps = 15/49 (30%)

Query: 433 MNI--ITGTEEPRAPFWIRWPTRILSFSVVLILIMCALATVVGVVLYRM 479
           +N+  I G E P A FWI               ++  LA  + ++  R 
Sbjct: 252 INVGGIPGAENPWA-FWI------------FCGLLVVLAVGLLLLFRRK 287


>gnl|CDD|217532 pfam03395, Pox_P4A, Poxvirus P4A protein. 
          Length = 889

 Score = 30.6 bits (69), Expect = 5.2
 Identities = 14/49 (28%), Positives = 22/49 (44%), Gaps = 4/49 (8%)

Query: 636 SDDLSENQKNADLIN--LHELI--RNSSLTSKSTTTTDPRAKQWLEDFK 680
           + D  E  +  D+IN  L E I   N  + S+ T +    +K  L D +
Sbjct: 715 TPDCDETNEITDMINTALKETINKENKIIVSQDTDSVANISKNQLIDIR 763


>gnl|CDD|162338 TIGR01398, FlhA, flagellar biosynthesis protein FlhA.  This model
           describes flagellar biosynthesis protein FlhA, one of a
           large number of genes associated with the biosynthesis
           of functional bacterial flagella. Homologs of many such
           proteins, including FlhA, function in type III protein
           secretion systems. A separate model describes InvA
           (Salmonella enterica), LcrD (Yersinia enterocolitica),
           HrcV (Xanthomonas), etc., all of which score below the
           noise cutoff for this model [Cellular processes,
           Chemotaxis and motility].
          Length = 678

 Score = 30.3 bits (69), Expect = 5.4
 Identities = 19/43 (44%), Positives = 23/43 (53%), Gaps = 10/43 (23%)

Query: 43  PKHETSISIDLGSGKTEEEEPLDFILVWAKPYNRREELEQEAN 85
           P  + +I  DL +G   EEE        AK   RREELEQEA+
Sbjct: 143 PGKQMAIDADLNAGLITEEE--------AK--KRREELEQEAD 175


>gnl|CDD|237292 PRK13182, racA, polar chromosome segregation protein; Reviewed.
          Length = 175

 Score = 29.2 bits (66), Expect = 7.4
 Identities = 8/21 (38%), Positives = 13/21 (61%)

Query: 178 MKKLPLTAQYTKAKHYLFDEE 198
           +K+L L  +  +  HY+F EE
Sbjct: 21  VKQLNLPCEKNEYGHYIFTEE 41


>gnl|CDD|216890 pfam02129, Peptidase_S15, X-Pro dipeptidyl-peptidase (S15 family). 
          Length = 265

 Score = 29.6 bits (67), Expect = 7.6
 Identities = 14/61 (22%), Positives = 21/61 (34%), Gaps = 10/61 (16%)

Query: 808 QESARPLYPSINVTMCRYHNYRNPPWFEPNHLKYKRSWYYWKLLAARLGFIVVFQNVVSF 867
                P+ P + +T   Y   +  P             +     AAR G+ VV Q+V   
Sbjct: 13  AAGGGPV-PVL-LTRSPYG--KRDPGAS-----TLALAHPEWEFAAR-GYAVVVQDVRGT 62

Query: 868 G 868
           G
Sbjct: 63  G 63


>gnl|CDD|225115 COG2205, KdpD, Osmosensitive K+ channel histidine kinase [Signal
           transduction mechanisms].
          Length = 890

 Score = 29.9 bits (68), Expect = 8.0
 Identities = 14/68 (20%), Positives = 30/68 (44%), Gaps = 5/68 (7%)

Query: 416 RPSYLARLSHLKRTKTIMNIITGTEEPRA-PFWIRWPTRILSF---SVVLILIMCALATV 471
           + S   RL+        ++I+     P   P  ++W  +I        ++ +++CALAT 
Sbjct: 353 KGSLADRLAREAPG-IDVHIVALDAPPDKRPNAVKWRPKIQGSWSRDYLVAILICALATA 411

Query: 472 VGVVLYRM 479
           + + L + 
Sbjct: 412 IAIQLDKF 419


>gnl|CDD|221232 pfam11802, CENP-K, Centromere-associated protein K.  CENP-K is one
           of seven new CENP-A-nucleosome distal (CAD) centromere
           components (the others being CENP-L, CENP-O, CENP-P,
           CENP-Q, CENP-R and CENP-S) that are identified as
           assembling on the CENP-A nucleosome associated complex,
           NAC. The CENP-A NAC is essential, as disruption of the
           complex causes errors of chromosome alignment and
           segregation that preclude cell survival despite
           continued centromere-derived mitotic checkpoint
           signalling. CENP-K is centromere-associated through its
           interaction with one or more components of the CENP-A
           NAC.
          Length = 273

 Score = 29.5 bits (66), Expect = 9.1
 Identities = 17/65 (26%), Positives = 30/65 (46%), Gaps = 14/65 (21%)

Query: 640 SENQKNADLINLHELIRNSSLTSKSTTTT-DPRAKQWLEDFKLLDWGTRGLYPEYLEMVL 698
              + +  LI LHE++    L ++   T  DP  K  ++D           +P Y+E++L
Sbjct: 205 GIQEPSVQLITLHEILEI--LINRLMDTPHDPYVK--VKD---------SFWPPYVELLL 251

Query: 699 QYGFV 703
           +YG  
Sbjct: 252 RYGIA 256


  Database: CDD.v3.10
    Posted date:  Mar 20, 2013  7:55 AM
  Number of letters in database: 10,937,602
  Number of sequences in database:  44,354
  
Lambda     K      H
   0.323    0.137    0.422 

Gapped
Lambda     K      H
   0.267   0.0766    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 48,942,619
Number of extensions: 4899910
Number of successful extensions: 4626
Number of sequences better than 10.0: 1
Number of HSP's gapped: 4619
Number of HSP's successfully gapped: 33
Length of query: 947
Length of database: 10,937,602
Length adjustment: 106
Effective length of query: 841
Effective length of database: 6,236,078
Effective search space: 5244541598
Effective search space used: 5244541598
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 64 (28.4 bits)