RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy5305
(947 letters)
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 48.9 bits (116), Expect = 9e-06
Identities = 53/291 (18%), Positives = 83/291 (28%), Gaps = 109/291 (37%)
Query: 680 KLLDWGTRGLYPEYLEMVLQYGFVVLFVSAFPLA-----PLFALINNIFETRLDAQKFL- 733
L++ G + + L + L F + + L L A + +T L K L
Sbjct: 70 SLVEPSKVGQFDQVLNLCLTE-----FENCY-LEGNDIHALAAKLLQENDTTLVKTKELI 123
Query: 734 -KYYR------RPVPHRATNIGIWFRVLDVVAKLAVISNAVLIAFTSNFIPRIMYKFLGS 786
Y RP ++ + FR AV +++ F G
Sbjct: 124 KNYITARIMAKRPFDKKSNSA--LFR--------AVGEGNA----------QLVAIFGG- 162
Query: 787 KNFTDEGFLNDTLSYFNTSDFQESARPLYPSINVTMCRYHNYRNPPWFEP------NHLK 840
+G +T YF + ++ Y Y L
Sbjct: 163 -----QG---NTDDYF--EELRD--------------LYQTY--HVLVGDLIKFSAETL- 195
Query: 841 YKRSWYYWKLLAARLGFIVVFQNVVSFGMIILQWLIPDIPSELKDQIKREEYLTSE---- 896
+L+ L VF G+ IL+WL + PS D ++YL S
Sbjct: 196 -------SELIRTTLDAEKVFTQ----GLNILEWL--ENPSNTPD----KDYLLSIPISC 238
Query: 897 -LIIKHETKRATAKQSKHDYRRT-----KSTANLIDSPSSLTSQHEEIETA 941
LI Q H Y T + L T + + TA
Sbjct: 239 PLI--------GVIQLAH-YVVTAKLLGFTPGELRSYLKGATGHSQGLVTA 280
Score = 47.4 bits (112), Expect = 3e-05
Identities = 66/452 (14%), Positives = 135/452 (29%), Gaps = 140/452 (30%)
Query: 86 HAEMKRNIFEKNLKK--QGLILKE--HHNGHLC-----FVTIYAPRSVLLTYADIMKLRM 136
A + F K L + +G + L +V+ S + + + L +
Sbjct: 29 IASQLQEQFNKILPEPTEGFAADDEPTTPAELVGKFLGYVSSLVEPSKVGQFDQV--LNL 86
Query: 137 PMKSYDDT--DGSTKKFNILSEAANFVVLFIKLCIAIEPANMPMKKLPLTAQYTKAKHYL 194
+ +++ +G+ +I + AA + + K + Y A+
Sbjct: 87 CLTEFENCYLEGN----DIHALAAKL--------LQENDTTLVKTKELIKN-YITARIMA 133
Query: 195 FDEENSDFLSPPSRSLIIDFILSRQSFTANNKDLANV----GIQRLIED------GIYKA 244
F + +L F A + A + G Q +D +Y+
Sbjct: 134 ----KRPFDKKSNSAL----------FRAVGEGNAQLVAIFGGQGNTDDYFEELRDLYQT 179
Query: 245 AYPLHDGDW-------------ATGDPEKSLRYSLYKEWAHLRNWIKN---QPADQIKEY 288
Y + GD T D EK ++ + ++ W++N P +Y
Sbjct: 180 -YHVLVGDLIKFSAETLSELIRTTLDAEK-----VFTQGLNILEWLENPSNTPDK---DY 230
Query: 289 LGVKCAFYFVWLGFY--THMLIPASILGLTVFLYGVFTLNNDSLSRDICNKTLNIIMCPL 346
L + +G H ++ A +LG T G + ++ ++ +
Sbjct: 231 L-LSIPISCPLIGVIQLAHYVVTAKLLGFT---PGELRSYLKGAT--GHSQ--GLVT-AV 281
Query: 347 CDRTCDYWK-LSDTCKSARVTYLF------DNTFSVIFAFLMSIWAVLFLESWKR----- 394
D W+ + + A +T LF + S+ + +S +
Sbjct: 282 AIAETDSWESFFVSVRKA-ITVLFFIGVRCYEAYPNT-----SLPPSILEDSLENNEGVP 335
Query: 395 -YSAAITHRWGLTHFTLE------------AEH--------PR-------PSYLARL-SH 425
+I+ LT ++ + + P L L
Sbjct: 336 SPMLSIS---NLTQEQVQDYVNKTNSHLPAGKQVEISLVNGAKNLVVSGPPQSLYGLNLT 392
Query: 426 LKRTKTIMNIITGTEEPRAPFWIRWPTRILSF 457
L++ K +G ++ R PF R F
Sbjct: 393 LRKAK----APSGLDQSRIPFSERKLKFSNRF 420
Score = 44.7 bits (105), Expect = 2e-04
Identities = 56/336 (16%), Positives = 94/336 (27%), Gaps = 119/336 (35%)
Query: 548 IYLFQFVNYYTSIFYIAFLKGKFIGY-PAKYTRVFNLRQEECSPGGCFMELSIQLAVIMV 606
I + Q +Y + K +G+ P LR G + AV +
Sbjct: 241 IGVIQLAHYVVT--------AKLLGFTPG------ELRSYLKGATGHSQ--GLVTAVAIA 284
Query: 607 GQQT---FNSIVEMFIPY-FW------KLYNVFMITTGLSDDLSENQ----------KNA 646
+ F V I F+ + Y + + +D EN N
Sbjct: 285 ETDSWESFFVSVRKAITVLFFIGVRCYEAYPNTSLPPSILEDSLENNEGVPSPMLSISNL 344
Query: 647 DLINLHELIR--NSSLTSKSTTTTDPRAKQWLEDFKLLDWGTRGLYPEYLEMVLQYG--- 701
+ + + NS L P KQ +E+ L G
Sbjct: 345 TQEQVQDYVNKTNSHL---------PAGKQ-------------------VEISLVNGAKN 376
Query: 702 FVVLFVSAFPLAPLFALINNIFETRLDAQKFLKYYRRPVPHRATNIGIWFRVLDVVAKLA 761
V VS P + L+ L N + A L R P R F L V +
Sbjct: 377 LV---VSGPPQS-LYGL-NLTLR-KAKAPSGLDQSRIPFSERKLKFSNRF--LPVAS--- 425
Query: 762 VISNAVLIAFTSNFIPRIMYKFL-GSKNFTDEGFLNDTLSY---------FNT---SDFQ 808
F S L + + ++ + + +S+ ++T SD +
Sbjct: 426 --------PFHS--------HLLVPASDLINKDLVKNNVSFNAKDIQIPVYDTFDGSDLR 469
Query: 809 ESARPLYPSINVTMCRYHNYRNPPW-----FEPNHL 839
+ + I + R W F+ H+
Sbjct: 470 VLSGSISERIVDCIIRLPVK----WETTTQFKATHI 501
Score = 43.1 bits (101), Expect = 6e-04
Identities = 78/469 (16%), Positives = 131/469 (27%), Gaps = 159/469 (33%)
Query: 4 DRKYLKASGTDEEDDIFFDVHS--------HDGTAEVDHN---------HTGPTGSPKHE 46
+ YL+ + D+H+ +D T K
Sbjct: 92 ENCYLEGN----------DIHALAAKLLQENDTTLVKTKELIKNYITARIMAKRPFDKKS 141
Query: 47 TSI--------SIDL-----GSGKTEE--EE---------PL--DFILVWAKPYNRREEL 80
S + L G G T++ EE L D I A E L
Sbjct: 142 NSALFRAVGEGNAQLVAIFGGQGNTDDYFEELRDLYQTYHVLVGDLIKFSA------ETL 195
Query: 81 EQEANHAEMKRNIFEKNLKKQGLILKEHH---NGHLCFVTIYAPRSV-------LLTYAD 130
+ +F + L + + +L P S L Y
Sbjct: 196 SELIRTTLDAEKVFTQGLNILEWLENPSNTPDKDYLL----SIPISCPLIGVIQLAHYVV 251
Query: 131 IMKL--RMPMKSYDDTDGSTKKF-NILSEAA--------NFVVLFIKLCIAIEPA----- 174
KL P + G+T +++ A +F V K AI
Sbjct: 252 TAKLLGFTPGELRSYLKGATGHSQGLVTAVAIAETDSWESFFVSVRK---AITVLFFIGV 308
Query: 175 ----NMPMKKLPLTA-QYTKAKHYLFDEENSDFLSP------PSRSLIIDFILSRQSFTA 223
P LP + + + E N SP ++ + D++
Sbjct: 309 RCYEAYPNTSLPPSILEDSL-------ENNEGVPSPMLSISNLTQEQVQDYV------NK 355
Query: 224 NNKDLANVGIQRLIEDGIYKAAYPLHDGDWA---TGDPEKSLRYSLYKEWAHLRNWIKNQ 280
N L + + L +G +G P+ SLY LR K
Sbjct: 356 TNSHLPA-------GKQVEIS---LVNGAKNLVVSGPPQ-----SLYGLNLTLRK-AKAP 399
Query: 281 PA-DQIK-EYLGVKCAFYFVWLG----FYTHMLIPASILGLTVFLYGVFTLNNDSLS--- 331
DQ + + K F +L F++H+L+PAS L + + N +
Sbjct: 400 SGLDQSRIPFSERKLKFSNRFLPVASPFHSHLLVPASDLINKDLVKNNVSFNAKDIQIPV 459
Query: 332 ------RDIC----NKTLNIIMCPLCDRTCDYWKLSDTCKSARVTYLFD 370
D+ + + I+ C + W +T + T++ D
Sbjct: 460 YDTFDGSDLRVLSGSISERIVDC-IIRLPVK-W---ETTTQFKATHILD 503
Score = 36.6 bits (84), Expect = 0.053
Identities = 62/419 (14%), Positives = 115/419 (27%), Gaps = 154/419 (36%)
Query: 566 LKGKFIGYPAKYTRVFNLRQEECSPGGCFMELSIQLAVIMVGQQTFNSIVEMFIPYFWKL 625
L GKF+GY + E S G F ++ L + + F + + +
Sbjct: 60 LVGKFLGYVS--------SLVEPSKVGQFDQV---LNLCL---TEFENC-------YLEG 98
Query: 626 YNVFMITTGLSDDLSENQKNADLINLHELIRN----SSLTSKSTTTTDPRAKQWLEDFKL 681
++ + L + + L+ ELI+N + + A L F+
Sbjct: 99 NDIHALAAKLLQE-----NDTTLVKTKELIKNYITARIMAKRPFDKKSNSA---L--FRA 148
Query: 682 LDWGTRGLYP---------EYL-EMVLQY----GFVVLFVSAFPLAPLFALINNIFETRL 727
+ G L +Y E+ Y V + ++ + T L
Sbjct: 149 VGEGNAQLVAIFGGQGNTDDYFEELRDLYQTYHVLVGDLIKF-----SAETLSELIRTTL 203
Query: 728 DAQKFLKYYRRPVPHRATNIGIWFRVLDVVAKLAVISNAVLIAFTSNFIPRIMYKFLGSK 787
DA+K + L+++ L + P
Sbjct: 204 DAEKVFT-----------------QGLNILEWLE----------NPSNTP---------- 226
Query: 788 NFTDEGFLNDTLSYFNTSDFQESARPL-YPSINVT-MCRYHNYRNPPWFEPNHLKYKRSW 845
D+ +L S P+ P I V + Y F P L+
Sbjct: 227 ---DKDYLL-------------SI-PISCPLIGVIQLAHYVVTAKLLGFTPGELRSYLKG 269
Query: 846 YYWKLLAARLGFIVV------------FQNVVSFGMIILQWL-------IPDI---PSEL 883
+V F V + +L ++ P+ PS L
Sbjct: 270 -----ATGHSQGLVTAVAIAETDSWESFFVSVRKAITVLFFIGVRCYEAYPNTSLPPSIL 324
Query: 884 KDQIKREEY----------LTSELIIKH-ETKRATAKQSKHDYRRTKSTANLIDSPSSL 931
+D ++ E LT E + + + K +L++ +L
Sbjct: 325 EDSLENNEGVPSPMLSISNLTQEQVQDYVNKTNSHLPAGKQVE------ISLVNGAKNL 377
Score = 34.3 bits (78), Expect = 0.24
Identities = 40/289 (13%), Positives = 71/289 (24%), Gaps = 128/289 (44%)
Query: 266 LYKEWAHLRN-WIKNQPADQIKEYLGVKCAFYFVWLGFYTHMLIPASILG--------LT 316
LYK ++ W ++ + GF SIL LT
Sbjct: 1635 LYKTSKAAQDVW------NRADNHFKDT-------YGF--------SILDIVINNPVNLT 1673
Query: 317 VFLYGVFTLNNDSLSRDICNKTLNIIMCPLCDRTCDYWKLSDTCKSARVTYLFD------ 370
+ G + I +I + D K+ +Y F
Sbjct: 1674 IHFGG-------EKGKRIRENYSAMIFETIVDGKLKTEKIFKEINEHSTSYTFRSEKGLL 1726
Query: 371 ----NTFSVIFAFLMSIWAVLFLESWKRYSAAITHRWGLTHFTLEAEHPRPSYLARLSHL 426
T + + + L+S GL P + A S L
Sbjct: 1727 SATQFTQPALTLMEKAAFED--LKS-----------KGLI--------PADATFAGHS-L 1764
Query: 427 KRTKTIMNIITGTEEPRAPFWIRWPTRILSFSVVLILIMCALATVVGVVLYRMSLYATLS 486
G E ++ ALA++ V MS+ + +
Sbjct: 1765 -----------G-E----------------YA--------ALASLADV----MSIESLVE 1784
Query: 487 LSHK------------ADWMNSYGI-------VIIPFTAACINLVCIQI 516
+ ++YG+ V F+ + V ++
Sbjct: 1785 VVFYRGMTMQVAVPRDELGRSNYGMIAINPGRVAASFSQEALQYVVERV 1833
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 46.0 bits (108), Expect = 6e-05
Identities = 87/654 (13%), Positives = 183/654 (27%), Gaps = 186/654 (28%)
Query: 108 HHNGHLCFVTIYAPRSVLLTYADIMKLRMP--MKSYD--DTDGSTKKFNILS-EAANFVV 162
HH+ H+ F T Y DI+ + + ++D D K +ILS E + ++
Sbjct: 2 HHHHHMDFET----GEHQYQYKDILSVFEDAFVDNFDCKDVQDMPK--SILSKEEIDHII 55
Query: 163 -----------LFIKLCIAIEPANMPMKKLPLTAQYTKAKHYLFDEENSDFLSPPSRSLI 211
LF L + Q + ++ + ++
Sbjct: 56 MSKDAVSGTLRLFWTLL---------------SKQEEMVQKFVEEVLRINY--------- 91
Query: 212 IDFILSRQSFTANNKDLANVGIQRLIEDGIYKAAYPLHDGDWATGDPEKSLRYSLY--KE 269
F++S + Q + +Y D + D + +Y++ +
Sbjct: 92 -KFLMSP---------IKTEQRQPSMMTRMYIEQ---RDRLY--NDNQVFAKYNVSRLQP 136
Query: 270 WAHLRNWIKN-QPADQI---------KEYL--------GVKCAFYF--VWLGFYTHMLIP 309
+ LR + +PA + K ++ V+C F WL + P
Sbjct: 137 YLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNL-KNCNSP 195
Query: 310 ASILGLTVFLYGVFTLNNDSLSRDICNKTLNIIMCPLCDRTCDYWK----------LSDT 359
++L + L N S S N L I + K L +
Sbjct: 196 ETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIH--SIQAELRRLLKSKPYENCLLVLLNV 253
Query: 360 CKSARVTYLFDNT---------FSVIFAFLMSIWAVLFLESW-----KRYSAAITHRW-G 404
+A+ F+ + V + + L+ ++ ++
Sbjct: 254 Q-NAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLD 312
Query: 405 LTHFTLEAE----HP---------------RPSYLARLSHLKRTKTIMNIITG--TEEPR 443
L E +P ++ K T I + + E R
Sbjct: 313 CRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYR 372
Query: 444 APFWIRWPTRILSFSV----VLI--LIMCAL--ATVVGVVLYRMSLYATLSLSHKADWMN 495
F SV I +++ + + V+ ++ SL K +
Sbjct: 373 KMFD--------RLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKES 424
Query: 496 SYGI--VIIPFTAACINLVCI--QILNLVYARLATYMTEFEYLRTQTEFDESLAIKIYLF 551
+ I + + N + I++ Y T+ + + L Y +
Sbjct: 425 TISIPSIYLELKVKLENEYALHRSIVD-HYNIPKTF--DSDDLIPPYLDQ-------YFY 474
Query: 552 QFVNYYTSIFYIAFLKGKFIGYPAKYTRVFNLRQEECSPGGCFMELSIQLAVIMVGQQTF 611
+ ++ + + + + R F+E I+
Sbjct: 475 SHIGHH---LKNIEHPERMTLFRMVF---LDFR---------FLEQKIRHDSTAWNASG- 518
Query: 612 NSIVEMFIPYFWKLYNVFMITTGLSDDLSENQKNADLINLHELIRNSSLTSKST 665
SI+ K Y ++ +D + +++ I + + SK T
Sbjct: 519 -SILNTLQQL--KFYKPYIC----DNDPKYERLVNAILDFLPKIEENLICSKYT 565
Score = 43.3 bits (101), Expect = 4e-04
Identities = 59/393 (15%), Positives = 117/393 (29%), Gaps = 117/393 (29%)
Query: 608 QQTFNSIVEMFIPYFWKLYNVFMITTGLSDDLSENQKNADLINLHELIRNSSLTSKSTTT 667
Q + I+ +F F ++ + D + + +I + S +
Sbjct: 15 QYQYKDILSVFEDAFVDNFDCKDV----QDMPKSILSKEE---IDHIIMSKDAVSGT--- 64
Query: 668 TDPRAKQWLEDFKLLDWGTRGLYPEYLEMVLQ--YGFVVLFVSAFPLAPLFALINNIFET 725
W LL +++E VL+ Y F++ + P +++ ++
Sbjct: 65 ---LRLFWT----LLSKQEEM-VQKFVEEVLRINYKFLMSPIKTEQRQP--SMMTRMYIE 114
Query: 726 ---RL--DAQKFLKYY-RRPVPHRA---------TNIGIWFRVLD--------VVAKLAV 762
RL D Q F KY R P+ + ++D VA
Sbjct: 115 QRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNV---LIDGVLGSGKTWVALDVC 171
Query: 763 ISNAVLIAFTSNFIPRIMYKFLGSKNFTDEGFLNDTLSYFNTSDFQESARPLYPSINVTM 822
+S V +F +I + L + N + E L D ++R + S N+ +
Sbjct: 172 LSYKVQCKM--DF--KIFWLNLKNCN-SPETVLEMLQKLLYQIDPNWTSRSDHSS-NIKL 225
Query: 823 CRYHNYRNPPWFEPNHL----KYKRS-------WYYW---------KLL--------AAR 854
R H+ + E L Y+ K+L
Sbjct: 226 -RIHSIQA----ELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDF 280
Query: 855 LGFIV---VFQNVVSFGM-------IILQWL---IPDIPSE---------------LKDQ 886
L + + S + ++L++L D+P E ++D
Sbjct: 281 LSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDG 340
Query: 887 IKREEYLTSELIIKHET--KRATAKQSKHDYRR 917
+ + K T + + +YR+
Sbjct: 341 LATWDNWKHVNCDKLTTIIESSLNVLEPAEYRK 373
Score = 40.6 bits (94), Expect = 0.003
Identities = 39/259 (15%), Positives = 73/259 (28%), Gaps = 84/259 (32%)
Query: 44 KHETSISIDLGSGKTEEEEPL--DF--------I------LVWAKPYNRREELEQEANHA 87
K T I L + E + I L+W + ++ N
Sbjct: 354 KLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDV--IKSDVMVVVNKL 411
Query: 88 EMKRNIFEKN--------------LKKQGLILKEHHNGHLCFVTIYAPRSVLLTYADIMK 133
K ++ EK LK + H RS++ Y
Sbjct: 412 H-KYSLVEKQPKESTISIPSIYLELKVKLENEYALH------------RSIVDHYN---- 454
Query: 134 LRMPMKSYDDTDGSTKK-----FNILS----------EAANFVVLFI-------KLCIAI 171
K++D D ++ + F ++F+ K+
Sbjct: 455 ---IPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQKIRHDS 511
Query: 172 EPANMPMKKLPLTAQYTKAKHYLFDEENSDFLSPPSRSL--IIDFILSRQSFTANNK--D 227
N L Q K Y+ D + R + I+DF+ + +K D
Sbjct: 512 TAWNASGSILNTLQQLKFYKPYICDNDPK-----YERLVNAILDFLPKIEENLICSKYTD 566
Query: 228 LANVGIQRLIEDGIYKAAY 246
L + + ++ I++ A+
Sbjct: 567 LLRIALMAE-DEAIFEEAH 584
Score = 40.2 bits (93), Expect = 0.003
Identities = 58/369 (15%), Positives = 106/369 (28%), Gaps = 141/369 (38%)
Query: 44 KHETSISID--LGSGKT----------EEEEPLDFILVW--------------------- 70
+ ++ ID LGSGKT + + +DF + W
Sbjct: 148 RPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLY 207
Query: 71 --AKPYNRREE------LEQEANHAEMKRNIFEKNLKKQGLIL-----KEHHN--GHLCF 115
+ R + L + AE++R + K + L+L + N C
Sbjct: 208 QIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSC- 266
Query: 116 VTIYAPRSVLLTYADIMKLRMPMKSYDDTDGSTKKFNILSEAANFVV-------LFIKLC 168
+LLT K D + +I + + + L +K
Sbjct: 267 -------KILLTTRF--------KQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLK-Y 310
Query: 169 IAIEPANMP-----------------MKKLPLTAQYTKAKHYLFDE-----ENS-DFLSP 205
+ P ++P ++ T KH D+ E+S + L P
Sbjct: 311 LDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNW--KHVNCDKLTTIIESSLNVLEP 368
Query: 206 PSRSLIIDFILSRQSFTANNKDLA----NVGI---------QRLIEDGIYKAAYPLHDGD 252
R+ F L+ + I +I+ + LH
Sbjct: 369 A---------EYRKMF----DRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYS 415
Query: 253 WATGDPEKSLRYSLYKEWAHLRNWIKNQPA--DQIKEYLGVKCAF------------YFV 298
P K S+ + L+ ++N+ A I ++ + F YF
Sbjct: 416 LVEKQP-KESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFY 474
Query: 299 W-LGFYTHM 306
+G H+
Sbjct: 475 SHIGH--HL 481
Score = 39.8 bits (92), Expect = 0.004
Identities = 58/461 (12%), Positives = 115/461 (24%), Gaps = 128/461 (27%)
Query: 532 EYLR---TQTEFDESLAIK------IYLFQFVNYYTSIFYIAFLKGKF-IGYPAKYTRVF 581
+ + ++ E D + K + LF + F++ I Y +
Sbjct: 40 DMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSP-- 97
Query: 582 NLRQEECSPGGCFMELSIQLAVIMVGQQTFNSIVEMFIPYF-WKLYNVFMITTGLSDDLS 640
++ E+ P Q + +N ++F Y +L + L
Sbjct: 98 -IKTEQRQPSMMTRMYIEQR------DRLYND-NQVFAKYNVSRLQPYLKLRQAL----- 144
Query: 641 ENQKNADLINLHELIRNSSLTSKSTTTTDPRAKQWLEDFKLLD-------WGTRGLY--P 691
+ A + + ++ + K+ A +K+ W P
Sbjct: 145 LELRPAKNVLIDGVLG----SGKTWV-----ALDVCLSYKVQCKMDFKIFWLNLKNCNSP 195
Query: 692 EYLEMVLQYGFVVLFVSAFPLAPLFALINNIFETRLDAQKFLKYYRRPVPHRATNIG--- 748
E + +LQ L P + ++ +L RR + +
Sbjct: 196 ETVLEMLQ----KLLYQIDP--NWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLV 249
Query: 749 ---IW----FRVLDVVAKLAVIS-NAVLIAFTSNFIPRIMYKFLGSKNFTDEGFLNDTLS 800
+ + ++ K+ + + + F S + S T + + S
Sbjct: 250 LLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPD----EVKS 305
Query: 801 YF------NTSDFQESAR---PLYPSINVTMCRYHNYRNPPWFEPNHLKYKRSW------ 845
D P SI R W N K
Sbjct: 306 LLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNV 365
Query: 846 --------YYWKLLAARLGFIVVFQNVVSFGMIILQ--WL-------------------- 875
+ +L VF I+L W
Sbjct: 366 LEPAEYRKMFDRL--------SVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLV 417
Query: 876 ----------IPDIPSELKDQIKREEYLTSELIIKHETKRA 906
IP I ELK +++ E L ++ + +
Sbjct: 418 EKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKT 458
Score = 33.3 bits (75), Expect = 0.49
Identities = 54/337 (16%), Positives = 96/337 (28%), Gaps = 82/337 (24%)
Query: 42 SPKHETSISIDLGSGKTEEEEPLDFILVWAKPYNRREELEQEA-NHAEMKRNIFEKNLKK 100
S T IS+D S +E +L + R ++L +E + +I
Sbjct: 282 SAATTTHISLDHHSMTLTPDEVKSLLLKYLD--CRPQDLPREVLTTNPRRLSII------ 333
Query: 101 QGLILKEHHNGHLCFVTIYAPRSVLLTYADIMKLRMPMKSYDDTDGSTKKFNILSEAANF 160
+++ + + KL ++S N+L E A +
Sbjct: 334 -AESIRDGLA-----------TWDNWKHVNCDKLTTIIES---------SLNVL-EPAEY 371
Query: 161 VVLFIKLCIAIEPANMPMKKLPLTAQYTKAKHYLFDEENSDFLSPPSRSLII-------- 212
+F +L + A++P L L + L SL+
Sbjct: 372 RKMFDRLSVFPPSAHIPTILLSL---IWFDVIKSDVMVVVNKLH--KYSLVEKQPKESTI 426
Query: 213 ---DFILSRQSFTANNKDLANVGIQRLIEDGIYKAAYPLHDG-DWATGDPEKSLRYSLYK 268
L + N L + +++ Y + D P +Y Y
Sbjct: 427 SIPSIYLELKVKLENEYALH----RSIVD------HYNIPKTFDSDDLIPPYLDQY-FYS 475
Query: 269 EWA-HLRNWIKNQPADQIKEYLGVKCAFY-FVWLG-----FYTHMLIPASILGL--TVFL 319
HL+N + + + F F +L T SIL +
Sbjct: 476 HIGHHLKN------IEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQLKF 529
Query: 320 YGVFTLNNDSLSRDICNKTL--------NIIMCPLCD 348
Y + +ND + N L N+I D
Sbjct: 530 YKPYICDNDPKYERLVNAILDFLPKIEENLICSKYTD 566
>1mhs_A Proton pump, plasma membrane ATPase; ION transport, membrane
protein, P-type ATPase, active transport, cryo-electron
microscopy; 8.00A {Neurospora crassa} SCOP: i.18.1.1
Length = 920
Score = 31.9 bits (73), Expect = 1.4
Identities = 21/131 (16%), Positives = 42/131 (32%), Gaps = 17/131 (12%)
Query: 372 TFSVIFAFLMSIWAVLFLESWKRYSAAITHRWGLTHFTLEAEHPRPSYLARLSHLKRTKT 431
SV+ ++++ + + + G ++ L L
Sbjct: 757 GMSVLLGVVLAVGTWITV--------TTMYAQGENGGIVQNFGNMDEVLFLQISLTENWL 808
Query: 432 IMNIITGTEEPRAPFWIRWPTRILSFSVVLILIMCALATVVGVVLYRMSLYATLSLSHKA 491
I PFW P+ LS ++ L+ I+ T+ G + + +
Sbjct: 809 IFITRA-----NGPFWSSIPSWQLSGAIFLVDILATCFTIWGWFEHSDTSIVAVVRI--- 860
Query: 492 DWMNSYGIVII 502
W+ S+GI I
Sbjct: 861 -WIFSFGIFCI 870
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 30.3 bits (67), Expect = 1.6
Identities = 13/41 (31%), Positives = 15/41 (36%), Gaps = 16/41 (39%)
Query: 95 EKN-LKK-QGLILKEHHNGHLCFVTIYAPRS--VLLTYADI 131
EK LKK Q LK +YA S L A +
Sbjct: 18 EKQALKKLQAS-LK-----------LYADDSAPALAIKATM 46
>2nn4_A Hypothetical protein YQGQ; novel fold, PFAM:DUF910, structural
genomics, PSI-2, protein structure initiative; 2.10A
{Bacillus subtilis} SCOP: a.272.1.1
Length = 72
Score = 27.4 bits (61), Expect = 3.7
Identities = 12/60 (20%), Positives = 29/60 (48%), Gaps = 9/60 (15%)
Query: 860 VFQNVVSFGMIIL----QWLIPDIPSELKD-----QIKREEYLTSELIIKHETKRATAKQ 910
V Q + +FG I+ + I + ELK+ I++E++ + +++ E ++ +
Sbjct: 8 VQQLLKTFGHIVYFGDRELEIEFMLDELKELYMNHMIEKEQWARAAAVLRKELEQTKNGR 67
>3ru6_A Orotidine 5'-phosphate decarboxylase; structural genomics, center
for structural genomics of infec diseases (csgid),
TIM-barrel; 1.80A {Campylobacter jejuni subsp}
Length = 303
Score = 29.6 bits (67), Expect = 4.9
Identities = 19/72 (26%), Positives = 29/72 (40%), Gaps = 16/72 (22%)
Query: 241 IYKAAYP----------LHDGDWATGDPEKSLRYSLYKEW---AHLRNWIKNQPADQ--I 285
IYK P +H + + D E++ KEW H WIK +P + +
Sbjct: 233 IYKNENPRAVCEKILNKIHRKNISENDIEQNYEVIQQKEWDMCNHFEEWIKTRPDKEHAL 292
Query: 286 KEYLGVKCAFYF 297
KE+ KC +
Sbjct: 293 KEFY-AKCGIKY 303
>3rlf_G Maltose transport system permease protein MALG; integral membrane
protein, ATPase, ABC transporter, membrane
transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia
coli} PDB: 3fh6_G 2r6g_G* 3puv_G* 3pux_G* 3puy_G*
3puz_G* 3pv0_G* 3puw_G*
Length = 296
Score = 28.8 bits (65), Expect = 7.1
Identities = 14/61 (22%), Positives = 26/61 (42%), Gaps = 5/61 (8%)
Query: 448 IRWPTRILSFSVVLILIMCALATVVGVV-LYRMSLYATLSLSHKADWMNSYGIVIIPFTA 506
+R+P + +LI M V+ +V LY + + L +N++G VI +
Sbjct: 113 MRFPGKATLLKGMLIFQM--FPAVLSLVALYAL--FDRLGEYIPFIGLNTHGGVIFAYLG 168
Query: 507 A 507
Sbjct: 169 G 169
>1zch_A Hypothetical oxidoreductase YCND; nitroreductase, NADH-oxidase;
HET: FMN; 1.85A {Bacillus subtilis} SCOP: d.90.1.1
Length = 255
Score = 28.9 bits (65), Expect = 7.9
Identities = 11/47 (23%), Positives = 24/47 (51%), Gaps = 8/47 (17%)
Query: 74 YNRREELEQEANHAEMKRNIFEKN--------LKKQGLILKEHHNGH 112
N+R ++ N ++ + +E+ L+KQG +++HH+ H
Sbjct: 208 MNKRTNGKETRNWSQSIASYYERLYYPHIREMLEKQGFKVEKHHHHH 254
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.323 0.137 0.422
Gapped
Lambda K H
0.267 0.0548 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 14,690,412
Number of extensions: 897057
Number of successful extensions: 1513
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1507
Number of HSP's successfully gapped: 30
Length of query: 947
Length of database: 6,701,793
Length adjustment: 103
Effective length of query: 844
Effective length of database: 3,825,930
Effective search space: 3229084920
Effective search space used: 3229084920
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 62 (28.1 bits)