RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy5305
         (947 letters)



>d2nn4a1 a.272.1.1 (A:1-62) Hypothetical protein YqgQ {Bacillus
           subtilis [TaxId: 1423]}
          Length = 62

 Score = 28.0 bits (63), Expect = 0.70
 Identities = 12/56 (21%), Positives = 28/56 (50%), Gaps = 9/56 (16%)

Query: 860 VFQNVVSFGMIIL----QWLIPDIPSELKDQ-----IKREEYLTSELIIKHETKRA 906
           V Q + +FG I+     +  I  +  ELK+      I++E++  +  +++ E ++ 
Sbjct: 7   VQQLLKTFGHIVYFGDRELEIEFMLDELKELYMNHMIEKEQWARAAAVLRKELEQT 62


>d1tkia_ d.144.1.7 (A:) Titin, kinase domain {Human (Homo sapiens)
           [TaxId: 9606]}
          Length = 321

 Score = 30.4 bits (68), Expect = 1.1
 Identities = 21/157 (13%), Positives = 53/157 (33%), Gaps = 21/157 (13%)

Query: 805 SDFQESARPLYPSINVTMCRYHNYRNPPWFEPNHLKYKRSWY-----YWKLLAARLGF-- 857
            +F ++ +         +     Y  P   + + +      +      + LL+    F  
Sbjct: 146 IEFGQARQLKPGDNFRLLFTAPEYYAPEVHQHDVVSTATDMWSLGTLVYVLLSGINPFLA 205

Query: 858 ---IVVFQNVVSFGMIILQWLIPDIPSELKDQIKREEYLTSELIIKHETKRATAKQS-KH 913
                + +N+++      +    +I  E  D + R       L++K    R TA ++ +H
Sbjct: 206 ETNQQIIENIMNAEYTFDEEAFKEISIEAMDFVDR-------LLVKERKSRMTASEALQH 258

Query: 914 DY---RRTKSTANLIDSPSSLTSQHEEIETASDEKTS 947
            +   +  + +  +I +       H  I+   +   S
Sbjct: 259 PWLKQKIERVSTKVIRTLKHRRYYHTLIKKDLNMVVS 295


>d1koba_ d.144.1.7 (A:) Twitchin, kinase domain {California sea hare
           (Aplysia californica), twk43 [TaxId: 6500]}
          Length = 352

 Score = 29.6 bits (66), Expect = 1.6
 Identities = 30/181 (16%), Positives = 58/181 (32%), Gaps = 24/181 (13%)

Query: 778 RIMYKFLGSKNFTDEGFLNDTLSYFNTSDFQESARPLYPSINVTMCRYHNYRNPPWFEPN 837
            I++  +  +N   E     ++      DF  + +     I         +  P   +  
Sbjct: 147 SIVHLDIKPENIMCETKKASSVKI---IDFGLATKLNPDEIVKVTTATAEFAAPEIVDRE 203

Query: 838 HLKYKRSWY-----YWKLLAARLGF-----IVVFQNVVSFGMIILQWLIPDIPSELKDQI 887
            + +    +      + LL+    F     +   QNV        +     +  E KD I
Sbjct: 204 PVGFYTDMWAIGVLGYVLLSGLSPFAGEDDLETLQNVKRCDWEFDEDAFSSVSPEAKDFI 263

Query: 888 KREEYLTSELIIKHETKRATAKQS-KHDYRRTKSTANLIDSPSSLTSQHEEIETASDEKT 946
           K        L+ K   KR T   + +H + +   +      PS   S++ +I     EK 
Sbjct: 264 KN-------LLQKEPRKRLTVHDALEHPWLKGDHSNLTSRIPS---SRYNKIRQKIKEKY 313

Query: 947 S 947
           +
Sbjct: 314 A 314


>d1koaa2 d.144.1.7 (A:5915-6264) Twitchin, kinase domain
           {Caenorhabditis elegans, pjk4 [TaxId: 6239]}
          Length = 350

 Score = 29.7 bits (66), Expect = 1.8
 Identities = 21/122 (17%), Positives = 37/122 (30%), Gaps = 18/122 (14%)

Query: 805 SDFQESARPLYPSINVTMCRYHNYRNPPWFEPNHLKYKRSWYY-----WKLLAARLGF-- 857
            DF  +A                +  P   E   + Y    +      + LL+    F  
Sbjct: 168 IDFGLTAHLDPKQSVKVTTGTAEFAAPEVAEGKPVGYYTDMWSVGVLSYILLSGLSPFGG 227

Query: 858 ---IVVFQNVVSFGMIILQWLIPDIPSELKDQIKREEYLTSELIIKHETKRATAKQS-KH 913
                  +NV S    +       I  + KD I++       L++     R T  Q+ +H
Sbjct: 228 ENDDETLRNVKSCDWNMDDSAFSGISEDGKDFIRK-------LLLADPNTRMTIHQALEH 280

Query: 914 DY 915
            +
Sbjct: 281 PW 282


>d1e12a_ f.13.1.1 (A:) Halorhodopsin {Archaeon Halobacterium
           salinarum [TaxId: 2242]}
          Length = 239

 Score = 29.2 bits (65), Expect = 1.9
 Identities = 28/156 (17%), Positives = 42/156 (26%), Gaps = 12/156 (7%)

Query: 368 LFDNTFSVIFAFLMSIWAVLFLESWKRYSAAITHRWGLTHFTLEAEHPRPSYLARLSHLK 427
           L  ++  V  A       V               R       +       SYL  LS L 
Sbjct: 5   LLSSSLWVNVALAGIAILVFVYMGRTIRPG--RPRLIWGATLMIPLVSISSYLGLLSGLT 62

Query: 428 RTKTIMNI-ITGTEEPRAPFWIRWPTRILSFSVVLILIMCALATVVGVVLYRMS------ 480
                M        E     W R+ T  LS  ++L+ +       +G +   ++      
Sbjct: 63  VGMIEMPAGHALAGEMVRSQWGRYLTWALSTPMILLALGLLADVDLGSLFTVIAADIGMC 122

Query: 481 ---LYATLSLSHKADWMNSYGIVIIPFTAACINLVC 513
              L A ++ S        Y I    F      LV 
Sbjct: 123 VTGLAAAMTTSALLFRWAFYAISCAFFVVVLSALVT 158


>d2d0ta1 a.266.1.2 (A:12-403) Indoleamine 2,3-dioxygenase {Human
           (Homo sapiens) [TaxId: 9606]}
          Length = 392

 Score = 28.0 bits (62), Expect = 6.6
 Identities = 10/54 (18%), Positives = 16/54 (29%), Gaps = 7/54 (12%)

Query: 73  PYNRREELEQEANHAEMKRNIFEKNLKKQGLI-------LKEHHNGHLCFVTIY 119
           P   R  L    ++  ++  +  K               L    + HL  VT Y
Sbjct: 289 PPAHRNFLCSLESNPSVREFVLSKGDAGLREAYDACVKALVSLRSYHLQIVTKY 342


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.323    0.137    0.422 

Gapped
Lambda     K      H
   0.267   0.0442    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 3,630,363
Number of extensions: 175026
Number of successful extensions: 387
Number of sequences better than 10.0: 1
Number of HSP's gapped: 385
Number of HSP's successfully gapped: 19
Length of query: 947
Length of database: 2,407,596
Length adjustment: 94
Effective length of query: 853
Effective length of database: 1,116,976
Effective search space: 952780528
Effective search space used: 952780528
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 57 (26.5 bits)