BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy5308
(137 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q22366|RIM_CAEEL Rab-3-interacting molecule unc-10 OS=Caenorhabditis elegans
GN=unc-10 PE=1 SV=2
Length = 1563
Score = 113 bits (283), Expect = 3e-25, Method: Composition-based stats.
Identities = 52/108 (48%), Positives = 74/108 (68%), Gaps = 1/108 (0%)
Query: 15 NADIIPDLSHLTLEERQIIESVMMRQKQEEERELEIMRRKQDEVHLLEQSIRQRSEQQKK 74
+ ++PDLSHL+ EER+IIE+V RQK EE +E +I ++ +E+ L++ I +R E KK
Sbjct: 3 DPSMMPDLSHLSAEEREIIENVFKRQKDEEAKETQISQKASEELSELDKQITERKETSKK 62
Query: 75 -AGVELDATCHICLKTKFADGVGHMCNYCNIRCCARCGGKVTLRSNKV 121
G + DA C IC KTKFADG+GH C YC +R CARCGG+ ++ +
Sbjct: 63 LVGTQDDAICQICQKTKFADGIGHKCFYCQLRSCARCGGRAQSKNKAI 110
>sp|Q9JIS1|RIMS2_RAT Regulating synaptic membrane exocytosis protein 2 OS=Rattus
norvegicus GN=Rims2 PE=1 SV=1
Length = 1555
Score = 107 bits (266), Expect = 3e-23, Method: Composition-based stats.
Identities = 60/112 (53%), Positives = 74/112 (66%), Gaps = 16/112 (14%)
Query: 19 IPDLSHLTLEERQIIESVMMRQKQEEERELEIMRRKQDEVHLLEQSIRQRSEQQKKAGVE 78
+PDLSHLT EER+II++VM RQK+EEE+E ++++ L Q EQ KK G E
Sbjct: 26 MPDLSHLTEEERKIIQAVMDRQKKEEEKEQSVLKK-------LHQQFEMYKEQVKKMGEE 78
Query: 79 L--------DA-TCHICLKTKFADGVGHMCNYCNIRCCARCGGKVTLRSNKV 121
DA TC IC KTKFADG GH C+YC + CARCGG+V+LRSNKV
Sbjct: 79 SQQQQEQKGDAPTCGICHKTKFADGCGHNCSYCQTKFCARCGGRVSLRSNKV 130
>sp|Q9EQZ7|RIMS2_MOUSE Regulating synaptic membrane exocytosis protein 2 OS=Mus musculus
GN=Rims2 PE=1 SV=1
Length = 1530
Score = 94.0 bits (232), Expect = 3e-19, Method: Composition-based stats.
Identities = 61/145 (42%), Positives = 75/145 (51%), Gaps = 42/145 (28%)
Query: 19 IPDLSHLTLEERQIIESVMMRQKQEEERELEIMRRKQDEVHL------------------ 60
+PDLSHLT EER+II +VM RQK+EEE+E +++ K++
Sbjct: 26 MPDLSHLTEEERKIILAVMDRQKKEEEKEQSVLKIKEEHKAQPTQWFPFSGITELVNNVL 85
Query: 61 ---------------LEQSIRQRSEQQKKAGVEL--------DA-TCHICLKTKFADGVG 96
L Q EQ KK G E DA TC IC KTKFADG G
Sbjct: 86 QPQQKQPNEKEPQTKLHQQFEMYKEQVKKMGEESQQQQEQKGDAPTCGICHKTKFADGCG 145
Query: 97 HMCNYCNIRCCARCGGKVTLRSNKV 121
H C+YC + CARCGG+V+LRSNKV
Sbjct: 146 HNCSYCQTKFCARCGGRVSLRSNKV 170
>sp|Q9UQ26|RIMS2_HUMAN Regulating synaptic membrane exocytosis protein 2 OS=Homo sapiens
GN=RIMS2 PE=1 SV=2
Length = 1411
Score = 90.9 bits (224), Expect = 2e-18, Method: Composition-based stats.
Identities = 60/136 (44%), Positives = 75/136 (55%), Gaps = 33/136 (24%)
Query: 19 IPDLSHLTLEERQIIESVMMRQKQEEERE---------------------LEIMRRKQDE 57
+PDLSHLT EER+II +VM RQK++ + E L+ +++Q+E
Sbjct: 26 MPDLSHLTEEERKIILAVMDRQKKKVKEEHKPQLTQWFPFSGITELVNNVLQPQQKQQNE 85
Query: 58 VH---LLEQSIRQRSEQQKKAGVEL--------DA-TCHICLKTKFADGVGHMCNYCNIR 105
L Q EQ KK G E DA TC IC KTKFADG GH C+YC +
Sbjct: 86 KEPQTKLHQQFEMYKEQVKKMGEESQQQQEQKGDAPTCGICHKTKFADGCGHNCSYCQTK 145
Query: 106 CCARCGGKVTLRSNKV 121
CARCGG+V+LRSNKV
Sbjct: 146 FCARCGGRVSLRSNKV 161
>sp|Q86UR5|RIMS1_HUMAN Regulating synaptic membrane exocytosis protein 1 OS=Homo sapiens
GN=RIMS1 PE=1 SV=1
Length = 1692
Score = 85.5 bits (210), Expect = 9e-17, Method: Composition-based stats.
Identities = 59/131 (45%), Positives = 74/131 (56%), Gaps = 30/131 (22%)
Query: 19 IPDLSHLTLEERQIIESVMMRQKQEEERELEIM----------------RRKQDEVHL-- 60
+PDLSHLT EER II +VM RQK+EEE+E ++ R +++ H
Sbjct: 22 LPDLSHLTEEERNIIMAVMDRQKEEEEKEEAMLKCVVRDMAKPAACKTPRNAENQPHQPS 81
Query: 61 --LEQSIRQRSEQQKKAGVEL---------DA-TCHICLKTKFADGVGHMCNYCNIRCCA 108
L Q EQ +K G E DA TC IC KTKFADG GH+C+YC + CA
Sbjct: 82 PRLHQQFESYKEQVRKIGEEARRYQGEHKDDAPTCGICHKTKFADGCGHLCSYCRTKFCA 141
Query: 109 RCGGKVTLRSN 119
RCGG+V+LRSN
Sbjct: 142 RCGGRVSLRSN 152
>sp|Q99NE5|RIMS1_MOUSE Regulating synaptic membrane exocytosis protein 1 OS=Mus musculus
GN=Rims1 PE=1 SV=2
Length = 1463
Score = 77.0 bits (188), Expect = 3e-14, Method: Composition-based stats.
Identities = 59/154 (38%), Positives = 68/154 (44%), Gaps = 53/154 (34%)
Query: 19 IPDLSHLTLEERQIIESVMMRQ-------------------------------KQEEERE 47
+PDLSHLT EER II +VM RQ Q +
Sbjct: 22 LPDLSHLTEEERNIIMAVMDRQKEEEEKEEAMLKCVVRDMAKPAACKTPRNAESQPHQPP 81
Query: 48 LEIMR-----RKQ-------DEVHLLEQSIRQRSEQQKKAGVEL---------DA-TCHI 85
L I R RK D L Q EQ +K G E DA TC I
Sbjct: 82 LNIFRCVCVPRKPSSEEGGPDRNWRLHQQFESYKEQVRKIGEEARRYQGEHKDDAPTCGI 141
Query: 86 CLKTKFADGVGHMCNYCNIRCCARCGGKVTLRSN 119
C KTKFADG GH+C+YC + CARCGG+V+LRSN
Sbjct: 142 CHKTKFADGCGHLCSYCRTKFCARCGGRVSLRSN 175
>sp|Q9JIR4|RIMS1_RAT Regulating synaptic membrane exocytosis protein 1 OS=Rattus
norvegicus GN=Rims1 PE=1 SV=1
Length = 1615
Score = 75.9 bits (185), Expect = 7e-14, Method: Composition-based stats.
Identities = 59/154 (38%), Positives = 73/154 (47%), Gaps = 53/154 (34%)
Query: 19 IPDLSHLTLEERQIIESVMMRQKQEEERELEIM----------------RRKQDEVHL-- 60
+PDLSHLT EER II +VM RQK+EEE+E ++ R + + H
Sbjct: 22 LPDLSHLTEEERNIIMAVMDRQKEEEEKEEAMLKCVVRDMAKPAACKTPRNAESQPHQPP 81
Query: 61 -------------------------LEQSIRQRSEQQKKAGVEL---------DA-TCHI 85
L Q EQ +K G E DA TC I
Sbjct: 82 LNIFRCVCVPRKPSSEEGGPERDWRLHQQFESYKEQVRKIGEEARRYQGEHKDDAPTCGI 141
Query: 86 CLKTKFADGVGHMCNYCNIRCCARCGGKVTLRSN 119
C KTKFADG GH+C+YC + CARCGG+V+LRSN
Sbjct: 142 CHKTKFADGCGHLCSYCRTKFCARCGGRVSLRSN 175
>sp|B1KL44|MOBA_SHEWM Molybdenum cofactor guanylyltransferase OS=Shewanella woodyi
(strain ATCC 51908 / MS32) GN=mobA PE=3 SV=1
Length = 196
Score = 37.7 bits (86), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 33/107 (30%), Positives = 50/107 (46%), Gaps = 18/107 (16%)
Query: 6 GMVTSMAQTNAD---IIP---DLSHLTLEERQIIESVMMRQKQEEERELEIM---RRKQD 56
GM+T+M QT AD ++P L L L ER M+ + Q E EL + +R+Q
Sbjct: 80 GMITAMGQTQADYLLVVPCDCPLLPLDLVER------MLTKIQSEGAELAVASDGKREQP 133
Query: 57 EVHLLEQSIRQRSEQQKKAG---VELDATCHICLKTKFADGVGHMCN 100
V LL+ S+R + G ++ H C+ T+F+D N
Sbjct: 134 VVLLLKPSLRDSMKAFLDGGERKIDFWYAKHHCVVTEFSDQPNAFIN 180
>sp|A1AR94|PDXJ_PELPD Pyridoxine 5'-phosphate synthase OS=Pelobacter propionicus (strain
DSM 2379) GN=pdxJ PE=3 SV=1
Length = 239
Score = 35.4 bits (80), Expect = 0.095, Method: Compositional matrix adjust.
Identities = 26/101 (25%), Positives = 41/101 (40%), Gaps = 5/101 (4%)
Query: 17 DIIPDLSHLT-----LEERQIIESVMMRQKQEEERELEIMRRKQDEVHLLEQSIRQRSEQ 71
D+I +L +T L + I+ S+ + QE+ + E+H +
Sbjct: 106 DVILNLKAITDAVKRLRDGGIVVSLFVDPDQEQIKAANKSGADYIEIHTGAYADAPDWPS 165
Query: 72 QKKAGVELDATCHICLKTKFADGVGHMCNYCNIRCCARCGG 112
QK+ E+DA + K GH NY NI+ A GG
Sbjct: 166 QKRQLEEIDAAIKLASKVGMGVNAGHGINYVNIKPLAALGG 206
>sp|B1YAX4|SYE_PYRNV Glutamate--tRNA ligase OS=Pyrobaculum neutrophilum (strain DSM
2338 / JCM 9278 / V24Sta) GN=gltX PE=3 SV=1
Length = 570
Score = 33.9 bits (76), Expect = 0.28, Method: Composition-based stats.
Identities = 19/69 (27%), Positives = 39/69 (56%), Gaps = 8/69 (11%)
Query: 11 MAQTNADIIPDLSHLTLEERQIIESVMMR-QKQEEERELEIMRRKQDEVHLLEQSIRQRS 69
MA+ A++ PDL E RQ++E+V+ + + E +L ++R + E ++ +R
Sbjct: 28 MAKIMAEV-PDLRPRAREVRQLVEAVVAKVNSMQPEEQLRLLRERWPE------ALEERR 80
Query: 70 EQQKKAGVE 78
+Q++ G+E
Sbjct: 81 VEQRRPGIE 89
>sp|Q9US46|ITT1_SCHPO E3 ubiquitin-protein ligase itt1 OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=itt1 PE=4 SV=1
Length = 435
Score = 33.9 bits (76), Expect = 0.31, Method: Composition-based stats.
Identities = 29/102 (28%), Positives = 48/102 (47%), Gaps = 11/102 (10%)
Query: 1 MCLTEGMVTSMAQTNADIIPDLSHLTLEERQIIESVMMRQKQEEERELEIMRRKQDEVHL 60
MC+ EGM + + + D D LTL+E +ES++ Q +ELE RR +++ ++
Sbjct: 207 MCIQEGMFSQIKCIDLDCGKDAPVLTLKE---LESIVGVQLTNRYKELEEKRRYENDSNI 263
Query: 61 LEQSIRQRSEQQKKAGVELDATCHICLKTKFADGVGHMCNYC 102
+ RS Q + + IC K FA C++C
Sbjct: 264 I---FCPRSFCQGPSKRDPGQKLAICQKCDFA-----FCSFC 297
>sp|Q9WVE9|ITSN1_RAT Intersectin-1 OS=Rattus norvegicus GN=Itsn1 PE=1 SV=1
Length = 1217
Score = 33.5 bits (75), Expect = 0.37, Method: Composition-based stats.
Identities = 18/57 (31%), Positives = 38/57 (66%), Gaps = 8/57 (14%)
Query: 24 HLTLEERQIIESVMMRQKQEEERELEIMRRKQDEVHLLEQSIRQRSEQQKKAGVELD 80
+L LE+R+ ++++ +Q++E+ER ++ R +Q E+ R+R EQ++K +EL+
Sbjct: 361 NLELEKRR--QALLEQQRKEQERLAQLERAEQ------ERKERERQEQERKRQLELE 409
>sp|Q15811|ITSN1_HUMAN Intersectin-1 OS=Homo sapiens GN=ITSN1 PE=1 SV=3
Length = 1721
Score = 33.1 bits (74), Expect = 0.58, Method: Composition-based stats.
Identities = 18/57 (31%), Positives = 38/57 (66%), Gaps = 8/57 (14%)
Query: 24 HLTLEERQIIESVMMRQKQEEERELEIMRRKQDEVHLLEQSIRQRSEQQKKAGVELD 80
+L LE+R+ ++++ +Q++E+ER ++ R +Q E+ R+R EQ++K +EL+
Sbjct: 362 NLELEKRR--QALLEQQRKEQERLAQLERAEQ------ERKERERQEQERKRQLELE 410
>sp|Q9LD55|EIF3A_ARATH Eukaryotic translation initiation factor 3 subunit A OS=Arabidopsis
thaliana GN=TIF3A1 PE=1 SV=1
Length = 987
Score = 32.7 bits (73), Expect = 0.66, Method: Composition-based stats.
Identities = 19/72 (26%), Positives = 43/72 (59%), Gaps = 3/72 (4%)
Query: 8 VTSMAQTNADIIPDLSHLTLEERQII---ESVMMRQKQEEERELEIMRRKQDEVHLLEQS 64
V S A A +IP+L+ +E + + +S++ ++K+++ER+ M R++++ L Q
Sbjct: 539 VPSKASKLAGVIPNLADTVEKEHKRLLARKSIIEKRKEDQERQQLEMEREEEQKRLKLQK 598
Query: 65 IRQRSEQQKKAG 76
+ + +EQ++ A
Sbjct: 599 LTEEAEQKRLAA 610
>sp|Q8TDW5|SYTL5_HUMAN Synaptotagmin-like protein 5 OS=Homo sapiens GN=SYTL5 PE=1 SV=1
Length = 730
Score = 32.3 bits (72), Expect = 0.77, Method: Composition-based stats.
Identities = 29/96 (30%), Positives = 49/96 (51%), Gaps = 7/96 (7%)
Query: 15 NADIIPDLSHLTLEERQIIESVMMRQKQEEERELEIMRRKQDEVHLLEQSIRQRSEQQKK 74
N++ I +LS L E+++I V+ R + ++ E + +R+ ++E LLE R QQ+
Sbjct: 4 NSEFI-NLSFLLDHEKEMILGVLKRDEYLKKVEDKRIRKLKNE--LLEAKRRSGKTQQEA 60
Query: 75 AGVELDATCHICLKTKFADGVGHMCNYCNIRCCARC 110
+ V + CH L F G C C++R C C
Sbjct: 61 SRVCVH--CHRNLGLIFDRG--DPCQACSLRVCREC 92
>sp|Q9NY28|GALT8_HUMAN Probable polypeptide N-acetylgalactosaminyltransferase 8 OS=Homo
sapiens GN=GALNT8 PE=2 SV=1
Length = 637
Score = 32.3 bits (72), Expect = 0.79, Method: Composition-based stats.
Identities = 18/67 (26%), Positives = 36/67 (53%), Gaps = 1/67 (1%)
Query: 18 IIPDLSHLTLEERQIIESVMMRQKQEEERELEIMRRKQDEVHLLEQSIRQRSEQQKKAGV 77
+I LSHL +E + + ES+ + +Q+E ++R +DEV L +++ + + KK
Sbjct: 56 VIKRLSHLEVELQDLKESMKLALRQQENVN-STLKRAKDEVRPLLKAMETKVNETKKHKT 114
Query: 78 ELDATCH 84
++ H
Sbjct: 115 QMKLFPH 121
>sp|Q80T23|SYTL5_MOUSE Synaptotagmin-like protein 5 OS=Mus musculus GN=Sytl5 PE=1 SV=1
Length = 753
Score = 32.3 bits (72), Expect = 0.79, Method: Composition-based stats.
Identities = 27/96 (28%), Positives = 50/96 (52%), Gaps = 7/96 (7%)
Query: 15 NADIIPDLSHLTLEERQIIESVMMRQKQEEERELEIMRRKQDEVHLLEQSIRQRSEQQKK 74
N++ I +LS L E+++I V+ R + ++ E + +R+ ++E LLE ++RS + +
Sbjct: 4 NSEFI-NLSFLLDHEKEMILGVLKRDEYLKKVEDKRIRKLKNE--LLEA--KRRSGKTHQ 58
Query: 75 AGVELDATCHICLKTKFADGVGHMCNYCNIRCCARC 110
+ CH L F G C C++R C+ C
Sbjct: 59 EASRVCVHCHKTLGLIFDRG--DPCQACSLRVCSEC 92
>sp|B8G8S1|SYS_CHLAD Serine--tRNA ligase OS=Chloroflexus aggregans (strain MD-66 / DSM
9485) GN=serS PE=3 SV=1
Length = 426
Score = 32.3 bits (72), Expect = 0.88, Method: Composition-based stats.
Identities = 15/47 (31%), Positives = 27/47 (57%)
Query: 38 MRQKQEEERELEIMRRKQDEVHLLEQSIRQRSEQQKKAGVELDATCH 84
M+ + E + ++E MRR DE+ L++ + EQQ+ A +E+ H
Sbjct: 62 MKDQAERQAKIEAMRRLGDEIAELDRQLAAVEEQQRAAMLEIRNLPH 108
>sp|B2V709|SYA_SULSY Alanine--tRNA ligase OS=Sulfurihydrogenibium sp. (strain YO3AOP1)
GN=alaS PE=3 SV=1
Length = 876
Score = 32.3 bits (72), Expect = 1.0, Method: Composition-based stats.
Identities = 19/40 (47%), Positives = 28/40 (70%), Gaps = 3/40 (7%)
Query: 18 IIPDLSHL-TLEERQIIESVMMRQKQ--EEERELEIMRRK 54
II DLS L T +E Q+++ V+ Q Q E+ERE+E +R+K
Sbjct: 716 IIKDLSRLLTAKEDQLLDRVLKLQNQIKEKEREIENLRKK 755
>sp|Q4QR29|CTR9_XENLA RNA polymerase-associated protein CTR9 homolog OS=Xenopus laevis
GN=ctr9 PE=2 SV=1
Length = 1157
Score = 31.2 bits (69), Expect = 1.9, Method: Composition-based stats.
Identities = 21/76 (27%), Positives = 42/76 (55%), Gaps = 3/76 (3%)
Query: 6 GMVTSMAQTNADIIPDLS-HLTLEERQIIESVMMRQKQEEEREL--EIMRRKQDEVHLLE 62
+ TS A+ +D++ H+ +Q E MR KQE+E+E+ + + ++Q+E HL E
Sbjct: 808 ALATSEARQCSDLLSQAQYHVARARKQDEEEKEMRTKQEQEKEVLRQKLLKEQEEKHLRE 867
Query: 63 QSIRQRSEQQKKAGVE 78
+++ +Q+ +E
Sbjct: 868 IEEQKKLLEQRAQYLE 883
>sp|Q2TAS2|SMUF2_XENLA E3 ubiquitin-protein ligase SMURF2 OS=Xenopus laevis GN=smurf2 PE=2
SV=1
Length = 751
Score = 30.8 bits (68), Expect = 2.4, Method: Composition-based stats.
Identities = 19/62 (30%), Positives = 35/62 (56%)
Query: 15 NADIIPDLSHLTLEERQIIESVMMRQKQEEERELEIMRRKQDEVHLLEQSIRQRSEQQKK 74
N ++ + + L+E+Q + V + Q +E L + R K+D VH L+ ++ S+QQ +
Sbjct: 333 NLHLVLNRQNQQLKEQQPPQVVSLCQLPDEVECLTVPRYKRDLVHKLKSLRQELSQQQPQ 392
Query: 75 AG 76
AG
Sbjct: 393 AG 394
>sp|P0C748|VP5_DXV96 Protein VP5 OS=Drosophila x virus (isolate Chung/1996) GN=VP5 PE=4
SV=1
Length = 237
Score = 30.4 bits (67), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 19/67 (28%), Positives = 31/67 (46%), Gaps = 14/67 (20%)
Query: 48 LEIMRRKQDEVHLLEQSIRQRSEQQKKAGVELDATCHIC---LKTKFADGVGHMCNYCNI 104
L I+RRK V + +Q + CH+C L +++ G G +C++ I
Sbjct: 2 LSIIRRKTRIVDITKQ-----------GNGNVPPACHLCSRRLTKEWSFGEGTICSFHRI 50
Query: 105 RCCARCG 111
RC +CG
Sbjct: 51 RCRVQCG 57
>sp|O60566|BUB1B_HUMAN Mitotic checkpoint serine/threonine-protein kinase BUB1 beta
OS=Homo sapiens GN=BUB1B PE=1 SV=3
Length = 1050
Score = 30.4 bits (67), Expect = 3.7, Method: Composition-based stats.
Identities = 17/82 (20%), Positives = 38/82 (46%), Gaps = 1/82 (1%)
Query: 28 EERQIIESVMMRQKQEEERELEIMRRKQDEVHLLEQSIRQRSEQQKKAGVELDATCHICL 87
E+R+ ++ E ++++E M +K E+ +Q R +Q++ + I
Sbjct: 426 EQREAELLTSAEKRAEMQKQIEEMEKKLKEIQTTQQE-RTGDQQEETMPTKETTKLQIAS 484
Query: 88 KTKFADGVGHMCNYCNIRCCAR 109
+++ G+ + C + CCAR
Sbjct: 485 ESQKIPGMTLSSSVCQVNCCAR 506
>sp|Q29KT5|SPIR_DROPS Protein spire OS=Drosophila pseudoobscura pseudoobscura GN=spir
PE=3 SV=2
Length = 1096
Score = 29.6 bits (65), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 16/47 (34%), Positives = 23/47 (48%), Gaps = 2/47 (4%)
Query: 74 KAGVELDATCHICLKTKFA--DGVGHMCNYCNIRCCARCGGKVTLRS 118
K VE C +CL+T+F+ G C C CA+C K+ + S
Sbjct: 809 KEDVEKRRVCFLCLRTRFSFFGPWGIQCKLCQRTVCAKCYTKMRIPS 855
>sp|Q9U1K1|SPIR_DROME Protein spire OS=Drosophila melanogaster GN=spir PE=1 SV=1
Length = 1020
Score = 29.3 bits (64), Expect = 7.9, Method: Composition-based stats.
Identities = 16/47 (34%), Positives = 23/47 (48%), Gaps = 2/47 (4%)
Query: 74 KAGVELDATCHICLKTKFA--DGVGHMCNYCNIRCCARCGGKVTLRS 118
K VE C +CL+T+F+ G C C CA+C K+ + S
Sbjct: 734 KEDVEKRRVCFLCLRTRFSFFGPWGIQCKLCQRTVCAKCYTKMRIPS 780
>sp|Q96G28|CC104_HUMAN Coiled-coil domain-containing protein 104 OS=Homo sapiens
GN=CCDC104 PE=1 SV=2
Length = 342
Score = 28.9 bits (63), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 31/54 (57%), Gaps = 12/54 (22%)
Query: 2 CLTEGMVTSMAQTNADIIPDLSHLTLEERQIIESVMMRQKQEEERELEIMRRKQ 55
CLT+G +D++ DL H EE +I+ V+ + K+E ++E E R+KQ
Sbjct: 138 CLTDG---------SDVVSDLEH---EEMKILREVLRKSKEEYDQEEERKRKKQ 179
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.319 0.131 0.379
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 46,105,726
Number of Sequences: 539616
Number of extensions: 1684939
Number of successful extensions: 15574
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 159
Number of HSP's successfully gapped in prelim test: 186
Number of HSP's that attempted gapping in prelim test: 14056
Number of HSP's gapped (non-prelim): 1609
length of query: 137
length of database: 191,569,459
effective HSP length: 102
effective length of query: 35
effective length of database: 136,528,627
effective search space: 4778501945
effective search space used: 4778501945
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (25.8 bits)