Query psy5308
Match_columns 137
No_of_seqs 131 out of 185
Neff 4.8
Searched_HMMs 29240
Date Fri Aug 16 23:14:10 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy5308.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/5308hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2zet_C Melanophilin; complex, 100.0 2E-34 6.8E-39 220.8 9.2 111 13-130 5-116 (153)
2 1zbd_B Rabphilin-3A; G protein 100.0 5.7E-35 2E-39 219.6 6.0 103 18-130 3-106 (134)
3 2a20_A Regulating synaptic mem 99.8 2.2E-22 7.7E-27 133.3 2.2 51 79-129 8-58 (62)
4 2csz_A Synaptotagmin-like prot 99.6 1.9E-18 6.4E-23 119.3 -3.5 69 54-131 4-73 (76)
5 3bc1_B Synaptotagmin-like prot 99.1 2.4E-11 8.2E-16 80.2 2.4 41 23-63 1-41 (59)
6 1joc_A EEA1, early endosomal a 96.9 0.0046 1.6E-07 45.0 7.8 50 80-129 69-120 (125)
7 2yw8_A RUN and FYVE domain-con 92.7 0.054 1.8E-06 36.3 2.1 51 79-129 18-70 (82)
8 1wfk_A Zinc finger, FYVE domai 91.2 0.066 2.3E-06 36.6 1.2 53 77-129 6-61 (88)
9 1x4u_A Zinc finger, FYVE domai 90.1 0.17 6E-06 33.9 2.5 34 80-113 14-47 (84)
10 3zyq_A Hepatocyte growth facto 89.3 0.08 2.7E-06 41.5 0.3 50 80-129 164-217 (226)
11 1z2q_A LM5-1; membrane protein 88.7 0.18 6E-06 33.9 1.7 50 80-129 21-74 (84)
12 1dvp_A HRS, hepatocyte growth 88.2 0.12 4E-06 40.1 0.6 50 80-129 161-214 (220)
13 3t7l_A Zinc finger FYVE domain 88.2 0.19 6.4E-06 34.3 1.5 49 80-128 20-70 (90)
14 1bor_A Transcription factor PM 87.8 0.43 1.5E-05 29.0 2.9 27 80-110 6-32 (56)
15 1vfy_A Phosphatidylinositol-3- 87.5 0.19 6.5E-06 32.9 1.2 50 80-129 11-64 (73)
16 2ecm_A Ring finger and CHY zin 86.8 0.21 7.1E-06 29.5 1.0 47 79-129 4-50 (55)
17 2vrw_B P95VAV, VAV1, proto-onc 86.5 0.15 5.2E-06 42.0 0.4 35 80-114 357-392 (406)
18 1y02_A CARP2, FYVE-ring finger 85.4 0.15 5.1E-06 37.1 -0.2 46 79-128 18-63 (120)
19 3j20_Y 30S ribosomal protein S 83.6 0.23 7.8E-06 30.9 0.1 29 103-131 18-46 (50)
20 3j21_g 50S ribosomal protein L 83.2 0.29 9.8E-06 30.9 0.4 27 102-132 12-38 (51)
21 2yho_A E3 ubiquitin-protein li 78.4 1.7 5.8E-05 28.3 3.0 35 80-114 18-59 (79)
22 3mpx_A FYVE, rhogef and PH dom 78.2 0.43 1.5E-05 39.3 0.0 108 20-129 315-427 (434)
23 1iym_A EL5; ring-H2 finger, ub 78.0 0.8 2.7E-05 26.9 1.2 46 80-129 5-50 (55)
24 4ayc_A E3 ubiquitin-protein li 77.7 6.2 0.00021 27.7 6.1 29 80-112 53-81 (138)
25 3ky9_A Proto-oncogene VAV; cal 73.7 0.81 2.8E-05 39.8 0.5 35 80-114 529-564 (587)
26 1z6u_A NP95-like ring finger p 70.8 6.4 0.00022 28.5 4.7 27 80-110 78-104 (150)
27 3fl2_A E3 ubiquitin-protein li 69.0 3.2 0.00011 28.5 2.7 10 80-89 52-61 (124)
28 2kiz_A E3 ubiquitin-protein li 68.3 1.1 3.9E-05 27.5 0.2 33 80-113 14-46 (69)
29 1vq8_Z 50S ribosomal protein L 67.2 1.4 4.9E-05 30.0 0.5 27 80-113 27-54 (83)
30 1pft_A TFIIB, PFTFIIBN; N-term 65.8 3.6 0.00012 24.5 2.1 8 105-112 25-32 (50)
31 3nmd_A CGMP dependent protein 62.8 3.6 0.00012 27.6 1.8 26 39-65 31-56 (72)
32 1wim_A KIAA0161 protein; ring 62.4 1 3.6E-05 29.7 -0.9 31 80-111 5-35 (94)
33 2k4x_A 30S ribosomal protein S 61.2 1.7 5.8E-05 27.3 -0.0 9 122-130 36-44 (55)
34 1x4j_A Ring finger protein 38; 60.9 1.6 5.4E-05 27.4 -0.2 46 80-130 23-68 (75)
35 2yrc_A Protein transport prote 60.7 1.6 5.5E-05 27.9 -0.2 12 121-132 32-43 (59)
36 2ect_A Ring finger protein 126 60.0 3.2 0.00011 26.0 1.2 46 80-130 15-60 (78)
37 1jm7_A BRCA1, breast cancer ty 56.9 3.2 0.00011 27.6 0.8 46 80-130 21-66 (112)
38 2elj_A Transcriptional adapter 56.7 8.2 0.00028 26.1 2.8 18 16-33 14-31 (88)
39 1e4u_A Transcriptional repress 56.4 4.4 0.00015 26.4 1.4 32 79-111 10-42 (78)
40 1vk6_A NADH pyrophosphatase; 1 55.8 4.8 0.00016 32.0 1.7 30 80-115 107-136 (269)
41 2ecg_A Baculoviral IAP repeat- 55.3 11 0.00037 23.7 3.1 35 80-114 25-66 (75)
42 2ea5_A Cell growth regulator w 54.9 6.8 0.00023 24.7 2.1 36 79-114 14-56 (68)
43 2ct7_A Ring finger protein 31; 52.9 5.3 0.00018 26.4 1.4 32 82-113 27-60 (86)
44 4ic3_A E3 ubiquitin-protein li 52.6 11 0.00038 23.7 2.8 35 80-114 24-65 (74)
45 2j9u_B VPS36, vacuolar protein 50.3 2.4 8.2E-05 28.8 -0.7 13 121-133 16-28 (76)
46 3eh2_A Protein transport prote 50.3 3.1 0.00011 38.0 -0.2 32 97-132 95-126 (766)
47 2jrp_A Putative cytoplasmic pr 50.0 5.1 0.00018 27.3 0.9 10 105-114 52-61 (81)
48 3h3m_A Flagellar protein FLIT; 49.2 22 0.00076 25.6 4.3 40 24-63 68-111 (126)
49 3efo_B SEC24 related gene fami 49.1 2.8 9.6E-05 38.3 -0.7 32 97-132 99-130 (770)
50 3eh1_A Protein transport prote 48.8 4.2 0.00014 37.1 0.4 31 97-132 86-116 (751)
51 4ayb_P DNA-directed RNA polyme 48.3 8.7 0.0003 23.9 1.7 25 82-106 5-33 (48)
52 2l0b_A E3 ubiquitin-protein li 48.2 2.7 9.3E-05 27.6 -0.7 46 79-129 39-84 (91)
53 1e8j_A Rubredoxin; iron-sulfur 47.0 6.1 0.00021 24.5 0.8 12 122-133 3-14 (52)
54 2ep4_A Ring finger protein 24; 46.9 3.9 0.00013 25.3 -0.1 47 80-131 15-61 (74)
55 2ct2_A Tripartite motif protei 45.9 4.6 0.00016 25.5 0.2 49 80-130 15-64 (88)
56 1yuz_A Nigerythrin; rubrythrin 45.7 4.6 0.00016 31.0 0.2 27 103-132 170-196 (202)
57 2ke4_A CDC42-interacting prote 45.2 38 0.0013 23.4 4.8 18 18-35 4-21 (98)
58 1dx8_A Rubredoxin; electron tr 44.7 5.9 0.0002 26.0 0.5 10 122-131 40-49 (70)
59 2ecv_A Tripartite motif-contai 44.4 9.8 0.00033 23.6 1.6 29 80-112 19-47 (85)
60 3lrq_A E3 ubiquitin-protein li 44.3 3.7 0.00013 27.4 -0.6 29 80-111 22-50 (100)
61 1g2h_A Transcriptional regulat 43.0 41 0.0014 20.4 4.3 17 24-40 17-33 (61)
62 3cc2_Z 50S ribosomal protein L 42.5 6.5 0.00022 28.5 0.5 11 80-90 60-70 (116)
63 2c2l_A CHIP, carboxy terminus 42.1 20 0.0007 26.9 3.3 27 80-110 208-234 (281)
64 3l9k_W Dynein intermediate cha 42.1 13 0.00044 21.9 1.7 11 25-35 1-11 (38)
65 3l11_A E3 ubiquitin-protein li 42.0 3.4 0.00012 27.9 -1.0 44 80-130 15-58 (115)
66 3h0g_L DNA-directed RNA polyme 41.3 13 0.00046 24.0 1.8 27 80-106 21-48 (63)
67 3qt1_I DNA-directed RNA polyme 41.3 7.5 0.00026 28.3 0.7 7 81-87 25-31 (133)
68 1j1d_B Troponin T, TNT; THIN f 40.7 53 0.0018 23.1 5.1 48 20-67 37-88 (106)
69 1cch_A Cytochrome C551; electr 40.7 32 0.0011 20.7 3.6 19 19-38 61-79 (82)
70 6rxn_A Rubredoxin; electron tr 39.8 5.4 0.00018 24.3 -0.3 12 122-133 4-15 (46)
71 2ecj_A Tripartite motif-contai 39.5 11 0.00037 21.8 1.1 30 80-113 15-44 (58)
72 1l4a_A Synaptobrevin; snare, s 39.3 8 0.00027 25.6 0.5 20 29-48 31-50 (80)
73 3ph2_B Cytochrome C6; photosyn 39.3 34 0.0012 20.7 3.5 23 19-41 59-82 (86)
74 2d0s_A Cytochrome C, cytochrom 38.8 27 0.00092 21.2 3.0 20 19-38 57-76 (79)
75 2ysj_A Tripartite motif-contai 38.7 6.8 0.00023 23.4 0.1 31 80-114 20-50 (63)
76 1urq_A M-tomosyn isoform; tran 38.7 74 0.0025 20.1 5.9 21 28-48 19-39 (63)
77 1x0t_A Ribonuclease P protein 38.3 11 0.00037 26.8 1.1 38 80-133 65-105 (120)
78 1mm2_A MI2-beta; PHD, zinc fin 38.2 17 0.00059 22.5 2.0 48 79-131 8-56 (61)
79 2xeu_A Ring finger protein 4; 37.6 5.4 0.00018 23.6 -0.5 33 80-112 3-38 (64)
80 2ltp_A Nuclear receptor corepr 43.9 6.9 0.00024 26.2 0.0 35 7-41 1-35 (89)
81 3lay_A Zinc resistance-associa 37.6 81 0.0028 23.8 6.0 17 23-39 66-82 (175)
82 1chc_A Equine herpes virus-1 r 36.9 10 0.00034 22.9 0.7 30 80-112 5-34 (68)
83 1ytz_T Troponin T; muscle, THI 36.9 92 0.0032 21.8 5.8 48 20-67 37-88 (107)
84 2egp_A Tripartite motif-contai 36.5 9.7 0.00033 23.5 0.6 48 80-131 12-62 (79)
85 1weo_A Cellulose synthase, cat 36.5 13 0.00043 26.1 1.2 31 80-110 16-49 (93)
86 2v3b_B Rubredoxin 2, rubredoxi 36.4 11 0.00036 23.6 0.7 10 122-131 36-45 (55)
87 2kvu_A MKL/myocardin-like prot 36.4 24 0.00083 23.6 2.6 30 6-35 10-39 (75)
88 2ecn_A Ring finger protein 141 36.4 7.3 0.00025 23.7 -0.0 41 80-129 15-55 (70)
89 3dxr_A Mitochondrial import in 36.3 19 0.00064 24.3 2.0 18 21-38 2-19 (89)
90 2k3r_A Ribonuclease P protein 36.1 12 0.0004 26.8 1.0 39 80-132 60-99 (123)
91 1ayg_A Cytochrome C-552; elect 35.8 40 0.0014 20.5 3.5 19 19-38 59-77 (80)
92 2ea6_A Ring finger protein 4; 35.8 4.8 0.00016 24.2 -1.0 34 80-113 15-51 (69)
93 1a56_A C-551, ferricytochrome 35.5 24 0.00083 21.6 2.4 20 19-38 59-78 (81)
94 2djb_A Polycomb group ring fin 35.5 8.6 0.00029 23.7 0.2 28 80-110 15-42 (72)
95 1gdv_A Cytochrome C6; RED ALGA 35.2 48 0.0016 19.9 3.8 17 24-40 64-80 (85)
96 3dr0_A Cytochrome C6; photosyn 35.1 43 0.0015 20.4 3.6 22 19-40 65-87 (93)
97 2kn9_A Rubredoxin; metalloprot 35.0 7.5 0.00026 26.4 -0.2 13 121-133 26-38 (81)
98 2puy_A PHD finger protein 21A; 35.0 11 0.00038 23.2 0.7 46 80-130 5-51 (60)
99 3jyw_9 60S ribosomal protein L 35.0 11 0.00038 25.1 0.7 11 80-90 26-36 (72)
100 3o36_A Transcription intermedi 34.9 13 0.00044 27.5 1.1 47 80-131 4-51 (184)
101 3ng2_A RNF4, snurf, ring finge 34.9 5.7 0.0002 24.1 -0.7 33 80-112 10-45 (71)
102 1g25_A CDK-activating kinase a 34.6 5.8 0.0002 24.0 -0.7 34 80-113 3-37 (65)
103 1ffk_W Ribosomal protein L37AE 34.6 10 0.00035 25.2 0.5 11 80-90 27-37 (73)
104 1z60_A TFIIH basal transcripti 34.3 5.6 0.00019 25.4 -0.8 33 81-114 16-48 (59)
105 2yql_A PHD finger protein 21A; 34.2 14 0.00046 22.5 1.0 46 79-129 8-54 (56)
106 4rxn_A Rubredoxin; electron tr 34.0 9.6 0.00033 23.9 0.2 11 122-132 3-13 (54)
107 1yk4_A Rubredoxin, RD; electro 34.0 14 0.00047 22.8 1.0 10 122-131 35-44 (52)
108 2exv_A Cytochrome C-551; alpha 33.8 35 0.0012 20.7 2.9 19 19-38 61-79 (82)
109 1xwh_A Autoimmune regulator; P 33.7 14 0.00047 23.3 1.0 49 79-132 7-56 (66)
110 2yur_A Retinoblastoma-binding 33.5 14 0.00048 22.9 1.0 47 80-131 15-61 (74)
111 2w9y_A CE-FAR-7, fatty acid/re 33.5 5 0.00017 29.9 -1.4 35 22-57 24-58 (140)
112 2ecw_A Tripartite motif-contai 33.3 9.1 0.00031 23.7 0.0 30 80-113 19-48 (85)
113 2ysl_A Tripartite motif-contai 33.2 7.3 0.00025 23.8 -0.4 46 80-130 20-65 (73)
114 1twf_L ABC10-alpha, DNA-direct 32.6 18 0.00061 23.7 1.4 11 80-90 28-38 (70)
115 1s24_A Rubredoxin 2; electron 32.1 8.6 0.00029 26.4 -0.2 11 122-132 35-45 (87)
116 3j21_i 50S ribosomal protein L 32.1 10 0.00036 25.9 0.2 11 80-90 35-45 (83)
117 1je8_A Nitrate/nitrite respons 32.0 53 0.0018 20.7 3.7 18 19-36 16-33 (82)
118 3dmi_A Cytochrome C6; electron 31.9 56 0.0019 19.8 3.7 22 19-40 60-82 (88)
119 3rk3_E Complexin-1; snare prot 31.8 1E+02 0.0036 19.8 5.1 30 38-67 16-48 (63)
120 2ku3_A Bromodomain-containing 31.0 6.2 0.00021 25.7 -1.1 52 77-130 13-65 (71)
121 1dl6_A Transcription factor II 31.0 17 0.00058 22.6 1.0 27 81-114 12-40 (58)
122 1kbe_A Kinase suppressor of RA 30.9 11 0.00036 23.0 0.0 31 80-113 14-44 (49)
123 1mz4_A Cytochrome C550; PSII a 30.7 38 0.0013 23.0 3.0 23 18-40 100-122 (137)
124 3u5n_A E3 ubiquitin-protein li 30.6 16 0.00053 27.7 0.9 47 80-131 7-54 (207)
125 1pcx_A Protein transport prote 30.5 12 0.00042 34.2 0.5 33 96-132 112-144 (810)
126 2l4d_A SCO1/SENC family protei 30.5 70 0.0024 20.2 4.1 22 18-40 75-96 (110)
127 3nkz_A Flagellar protein FLIT; 30.1 79 0.0027 22.4 4.6 37 27-63 65-101 (123)
128 2ro1_A Transcription intermedi 30.1 19 0.00065 27.1 1.3 46 80-130 2-48 (189)
129 3t6p_A Baculoviral IAP repeat- 30.0 35 0.0012 28.2 3.1 10 80-89 295-304 (345)
130 1ls9_A Cytochrome C6; omega lo 29.8 58 0.002 20.1 3.5 23 19-41 63-86 (91)
131 2jmo_A Parkin; IBR, E3 ligase, 29.6 28 0.00096 22.6 2.0 35 80-114 25-68 (80)
132 1kil_E Complexin I snare-compl 29.6 1E+02 0.0035 19.0 4.9 27 40-66 15-44 (49)
133 2xb1_A Pygopus homolog 2, B-ce 29.6 7.4 0.00025 27.0 -1.0 52 80-132 3-62 (105)
134 1v87_A Deltex protein 2; ring- 29.5 12 0.00042 24.9 0.2 52 80-132 25-92 (114)
135 1e29_A Cytochrome C549; electr 29.3 67 0.0023 22.2 4.1 24 18-41 100-123 (135)
136 2akl_A PHNA-like protein PA012 29.2 14 0.00048 27.5 0.5 10 105-114 45-54 (138)
137 1x4v_A Hypothetical protein LO 29.2 19 0.00066 23.1 1.1 27 80-109 12-40 (63)
138 2ecy_A TNF receptor-associated 29.2 16 0.00054 22.0 0.6 44 80-130 15-58 (66)
139 1jm7_B BARD1, BRCA1-associated 29.2 26 0.00089 23.6 1.9 29 80-111 22-50 (117)
140 1f1c_A Cytochrome C549; dimeri 29.0 58 0.002 21.4 3.6 24 18-41 98-121 (129)
141 2vpb_A Hpygo1, pygopus homolog 28.9 4.3 0.00015 26.0 -2.1 49 80-129 8-64 (65)
142 4gne_A Histone-lysine N-methyl 28.8 21 0.00071 25.0 1.3 41 81-126 59-99 (107)
143 1m2v_B SEC24, protein transpor 28.8 14 0.00048 34.7 0.5 32 97-132 229-260 (926)
144 3kdw_A Putative sugar binding 28.8 65 0.0022 25.6 4.3 42 23-65 151-192 (221)
145 3tso_C RAB11 family-interactin 28.7 1.1E+02 0.0039 20.4 4.9 38 21-61 10-47 (75)
146 2zkr_2 60S ribosomal protein L 28.5 20 0.0007 25.2 1.2 34 80-123 16-49 (97)
147 1tjl_A DNAK suppressor protein 28.4 1.4E+02 0.0047 21.9 5.8 26 80-105 111-141 (151)
148 1f1f_A Cytochrome C6; heme, pr 28.2 73 0.0025 19.3 3.8 22 19-40 62-84 (89)
149 2aj6_A Hypothetical protein MW 28.2 33 0.0011 22.9 2.2 32 7-38 1-32 (159)
150 1we9_A PHD finger family prote 28.1 13 0.00043 23.0 0.0 54 80-133 6-60 (64)
151 1sfc_A VAMP 2, protein (synapt 28.1 1.4E+02 0.0048 20.1 6.6 34 30-64 47-80 (96)
152 2y43_A E3 ubiquitin-protein li 27.9 9.8 0.00033 24.9 -0.6 29 80-111 22-50 (99)
153 2aqe_A Transcriptional adaptor 27.6 54 0.0018 22.0 3.2 18 16-33 14-31 (90)
154 2yt5_A Metal-response element- 27.0 12 0.0004 23.2 -0.3 51 80-131 6-61 (66)
155 1c75_A Cytochrome C-553; heme, 26.9 36 0.0012 20.3 2.1 20 19-39 50-69 (71)
156 3ztg_A E3 ubiquitin-protein li 26.9 11 0.00037 24.2 -0.5 29 80-111 13-41 (92)
157 2jun_A Midline-1; B-BOX, TRIM, 26.7 13 0.00044 24.4 -0.1 32 80-112 3-34 (101)
158 3a7m_A Flagellar protein FLIT; 26.7 73 0.0025 22.5 3.9 37 27-63 62-98 (122)
159 1faq_A RAF-1; transferase, ser 26.6 16 0.00054 21.4 0.3 32 80-114 14-45 (52)
160 3iz5_m 60S ribosomal protein L 26.5 13 0.00046 25.8 -0.0 11 80-90 36-46 (92)
161 1cyi_A Cytochrome C6, cytochro 26.4 81 0.0028 19.3 3.8 23 19-41 60-83 (90)
162 3n8e_A Stress-70 protein, mito 26.4 1.8E+02 0.0063 21.5 6.3 20 23-42 136-155 (182)
163 4b8x_A SCO5413, possible MARR- 26.3 46 0.0016 22.9 2.8 18 22-39 119-136 (147)
164 2y1n_A E3 ubiquitin-protein li 26.0 24 0.00081 30.0 1.4 35 80-114 332-377 (389)
165 3m7k_A Restriction endonucleas 25.9 19 0.00064 26.9 0.6 22 82-103 3-28 (142)
166 1c6r_A Cytochrome C6; electron 25.9 84 0.0029 19.1 3.8 22 19-40 61-83 (89)
167 3c5k_A HD6, histone deacetylas 25.8 21 0.00072 25.0 0.9 21 105-131 25-45 (109)
168 4aik_A Transcriptional regulat 25.8 47 0.0016 23.1 2.8 18 22-39 115-132 (151)
169 2vje_A E3 ubiquitin-protein li 25.7 11 0.00038 23.2 -0.6 10 80-89 8-17 (64)
170 4a17_Y RPL37A, 60S ribosomal p 25.5 17 0.00059 25.8 0.3 11 80-90 36-46 (103)
171 1lko_A Rubrerythrin all-iron(I 25.4 1.1E+02 0.0038 22.8 4.9 9 81-89 156-164 (191)
172 1wev_A Riken cDNA 1110020M19; 25.3 17 0.00058 24.2 0.3 52 80-132 16-73 (88)
173 4hc9_A Trans-acting T-cell-spe 25.2 32 0.0011 24.3 1.7 24 80-103 5-33 (115)
174 2xzm_M RPS18E; ribosome, trans 25.2 1.3E+02 0.0045 22.3 5.3 21 19-39 55-75 (155)
175 3ivp_A Putative transposon-rel 25.1 94 0.0032 20.6 4.1 20 22-41 91-110 (126)
176 2jne_A Hypothetical protein YF 25.0 14 0.00047 26.2 -0.2 36 79-114 31-71 (101)
177 4etp_A Kinesin-like protein KA 25.0 1.4E+02 0.0047 25.0 5.9 12 51-62 47-58 (403)
178 2ckl_B Ubiquitin ligase protei 24.9 10 0.00036 27.2 -0.9 31 80-113 54-84 (165)
179 2y7c_A Type-1 restriction enzy 24.9 1.9E+02 0.0066 22.7 6.6 39 26-65 374-413 (464)
180 1kx2_A Mono-heme C-type cytoch 24.6 32 0.0011 21.3 1.5 17 23-39 63-79 (81)
181 1wve_C 4-cresol dehydrogenase 24.5 64 0.0022 19.8 3.0 17 23-39 56-72 (80)
182 3v43_A Histone acetyltransfera 24.4 24 0.00083 24.2 1.0 48 81-129 62-110 (112)
183 3qc5_X Platelet binding protei 24.0 58 0.002 27.7 3.3 20 18-37 288-307 (360)
184 3okg_A Restriction endonucleas 24.0 2.1E+02 0.0073 22.2 6.6 39 26-64 173-211 (412)
185 1lj9_A Transcriptional regulat 23.8 1.4E+02 0.0049 19.5 4.9 14 24-37 88-101 (144)
186 3oi8_A Uncharacterized protein 23.8 47 0.0016 22.7 2.4 31 23-53 1-31 (156)
187 3oj7_A Putative histidine tria 23.7 40 0.0014 22.7 2.0 23 17-39 50-72 (117)
188 3kzn_A Aotcase, N-acetylornith 23.3 52 0.0018 27.1 3.0 38 4-44 11-48 (359)
189 3u5c_S 40S ribosomal protein S 23.2 1.3E+02 0.0045 22.1 4.9 21 19-39 55-75 (146)
190 1mxr_A Ribonucleotide reductas 23.2 78 0.0027 26.1 4.0 27 23-49 63-89 (375)
191 3uul_A Utrophin; spectrin repe 23.1 1.4E+02 0.0046 19.2 4.6 40 22-61 72-115 (118)
192 2ct0_A Non-SMC element 1 homol 23.1 30 0.001 22.5 1.1 29 80-111 15-43 (74)
193 2ckl_A Polycomb group ring fin 22.8 13 0.00043 24.8 -0.8 28 80-110 15-42 (108)
194 1yyb_A Programmed cell death p 22.6 76 0.0026 17.0 2.6 15 41-55 5-19 (27)
195 3cu4_A Cytochrome C family pro 22.5 86 0.003 19.0 3.3 21 19-39 60-82 (85)
196 1gks_A Cytochrome C551; haloph 22.5 67 0.0023 19.6 2.7 21 19-39 55-76 (78)
197 1umq_A Photosynthetic apparatu 22.5 67 0.0023 21.1 2.8 19 23-41 36-54 (81)
198 2y7c_A Type-1 restriction enzy 22.4 2.1E+02 0.007 22.6 6.3 38 26-65 161-200 (464)
199 2lv9_A Histone-lysine N-methyl 22.2 21 0.00073 24.2 0.3 49 81-132 29-77 (98)
200 3okg_A Restriction endonucleas 22.0 1.1E+02 0.0039 23.8 4.6 40 26-65 364-403 (412)
201 2l2l_A Transcriptional repress 21.9 1.4E+02 0.0047 17.9 5.2 12 26-37 2-13 (43)
202 3iz6_M 40S ribosomal protein S 21.8 1.5E+02 0.0052 21.9 5.0 21 19-39 53-73 (152)
203 2d8t_A Dactylidin, ring finger 21.6 17 0.0006 22.2 -0.2 43 80-130 15-57 (71)
204 3hd7_A Vesicle-associated memb 21.5 1.8E+02 0.0063 19.2 6.6 34 30-64 22-55 (91)
205 2lo3_A SAGA-associated factor 21.5 35 0.0012 20.7 1.1 15 103-117 16-30 (44)
206 1cc5_A Cytochrome C5; electron 21.3 78 0.0027 19.8 2.9 16 23-38 66-81 (83)
207 1m2o_A SEC23, protein transpor 21.2 29 0.00098 31.6 1.0 34 96-133 53-88 (768)
208 2vje_B MDM4 protein; proto-onc 21.1 18 0.00063 22.1 -0.2 26 79-104 6-38 (63)
209 1w7p_D VPS36P, YLR417W; ESCRT- 20.8 21 0.00071 31.9 0.0 14 120-133 115-128 (566)
210 2l5u_A Chromodomain-helicase-D 20.8 13 0.00045 23.1 -0.9 48 79-131 10-58 (61)
211 3h8k_B Autocrine motility fact 20.7 1.2E+02 0.004 16.6 4.3 24 26-53 2-25 (28)
212 2cuj_A Transcriptional adaptor 20.6 1.1E+02 0.0036 21.4 3.7 17 17-33 33-49 (108)
213 4ap4_A E3 ubiquitin ligase RNF 20.5 14 0.00048 24.7 -1.0 10 80-89 7-16 (133)
214 1wfe_A Riken cDNA 2310008M20 p 20.3 26 0.00089 23.7 0.4 28 80-110 25-54 (86)
215 3ulq_B Transcriptional regulat 20.2 61 0.0021 21.1 2.3 21 17-37 22-42 (90)
No 1
>2zet_C Melanophilin; complex, GTP-binding protein, GTPase, G-protein, RAB, RAB27B, effector, SLP homology domain, acetylation, lipoprotein, membrane; HET: GTP; 3.00A {Mus musculus}
Probab=100.00 E-value=2e-34 Score=220.85 Aligned_cols=111 Identities=18% Similarity=0.213 Sum_probs=89.1
Q ss_pred CCCCCCCCCCCCCCHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhCcccccccccccccc-c
Q psy5308 13 QTNADIIPDLSHLTLEERQIIESVMMRQKQEEERELEIMRRKQDEVHLLEQSIRQRSEQQKKAGVELDATCHICLKTK-F 91 (137)
Q Consensus 13 ~~~~~~~~dLS~LteeEr~~Il~VL~R~~~le~~E~~RirkL~~el~~lk~~~~~~~~~~r~~G~~~~~~C~~C~ktk-f 91 (137)
+.+|+++||||||||+||++|++||+||++++++|++||++|+++|++++.. ++.....+.+.+++|++|++++ |
T Consensus 5 ~~~m~~~~dLs~LteeEr~~Il~VL~Rd~~l~~~EeeRi~kLk~~l~~~~~k----~~~~~~~~~~~~~~C~~C~~~fg~ 80 (153)
T 2zet_C 5 SSGMGKRLDLSTLTDEEAEHVWAVVQRDFDLRRREEERLQGLKGKIQKESSK----RELLSDTAHLNETHCARCLQPYRL 80 (153)
T ss_dssp ------CCCCTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHTTSTTGGGTBCTTTCCBGGG
T ss_pred CCCCccCCCcccCCHHHHHHHHHHHHhHHHHHHhHHHHHHHHHHHHHHHHHH----hhhhcccccCCCccchhhcCcccc
Confidence 4567799999999999999999999999999999999999999999988531 1111112344589999999995 9
Q ss_pred cCCCCCCCccccccccccCCceeecCCCCcceEEeeecc
Q psy5308 92 ADGVGHMCNYCNIRCCARCGGKVTLRSNKVSVEVTTRGH 130 (137)
Q Consensus 92 ~~g~G~~C~~C~~rvC~rCg~~v~lr~n~~~W~Ctvc~~ 130 (137)
++++|++|.||+++||++||++ +++ ..+|+|+||..
T Consensus 81 l~~~g~~C~~C~~~VC~~C~~~--~~~-~~~W~C~vC~k 116 (153)
T 2zet_C 81 LLNSRRQCLECSLFVCKSCSHA--HPE-EQGWLCDPCHL 116 (153)
T ss_dssp CSSCCEECTTTCCEECGGGEEC--CSS-SSSCEEHHHHH
T ss_pred ccCCCCcCCCCCchhhcccccc--cCC-CCcEeeHHHHH
Confidence 9999999999999999999965 454 56999999754
No 2
>1zbd_B Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: g.50.1.1
Probab=100.00 E-value=5.7e-35 Score=219.57 Aligned_cols=103 Identities=21% Similarity=0.363 Sum_probs=89.3
Q ss_pred CCCCCCCCCHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhCcccccccccccccc-ccCCCC
Q psy5308 18 IIPDLSHLTLEERQIIESVMMRQKQEEERELEIMRRKQDEVHLLEQSIRQRSEQQKKAGVELDATCHICLKTK-FADGVG 96 (137)
Q Consensus 18 ~~~dLS~LteeEr~~Il~VL~R~~~le~~E~~RirkL~~el~~lk~~~~~~~~~~r~~G~~~~~~C~~C~ktk-f~~g~G 96 (137)
..+|||||||+||++|++||+||++++++|++||++|+++|+++++++ .| +.+++|+||++++ |++++|
T Consensus 3 ~~~dls~LteeE~~~Il~Vl~Rd~~l~~~E~~ri~kL~~~l~~~k~~~---------~~-~~~~~C~~C~~~~g~l~~~g 72 (134)
T 1zbd_B 3 HMRKQEELTDEEKEIINRVIARAEKMETMEQERIGRLVDRLETMRKNV---------AG-DGVNRCILCGEQLGMLGSAS 72 (134)
T ss_dssp -----CCCCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC---------CS-CSSSBCSSSCCBCSTTSCCE
T ss_pred CCCCcccCCHHHHHHHHHHHhhHHHHHHhHHHHHHHHHHHHHHHHHHh---------cc-CCCccccccCCCcccccCCC
Confidence 469999999999999999999999999999999999999999998642 33 3479999999999 999999
Q ss_pred CCCccccccccccCCceeecCCCCcceEEeeecc
Q psy5308 97 HMCNYCNIRCCARCGGKVTLRSNKVSVEVTTRGH 130 (137)
Q Consensus 97 ~~C~~C~~rvC~rCg~~v~lr~n~~~W~Ctvc~~ 130 (137)
++|.||+++||++||++++.+++.++|+|+||..
T Consensus 73 ~~C~~C~~~VC~~C~~~~~~~~~~~~W~C~vC~k 106 (134)
T 1zbd_B 73 VVCEDCKKNVCTKCGVETSNNRPHPVWLCKICLE 106 (134)
T ss_dssp EECTTTCCEEETTSEEECCCSSSSCCEEEHHHHH
T ss_pred CCCCCCCcccccccCCccCCCCCccceechhhHH
Confidence 9999999999999999986666778999999764
No 3
>2a20_A Regulating synaptic membrane exocytosis protein 2; zinc-finger domain, metal binding protein; NMR {Rattus norvegicus} PDB: 2cjs_C
Probab=99.84 E-value=2.2e-22 Score=133.31 Aligned_cols=51 Identities=57% Similarity=1.033 Sum_probs=49.1
Q ss_pred ccccccccccccccCCCCCCCccccccccccCCceeecCCCCcceEEeeec
Q psy5308 79 LDATCHICLKTKFADGVGHMCNYCNIRCCARCGGKVTLRSNKVSVEVTTRG 129 (137)
Q Consensus 79 ~~~~C~~C~ktkf~~g~G~~C~~C~~rvC~rCg~~v~lr~n~~~W~Ctvc~ 129 (137)
+.++|.||+||||+||.||.|.||+.++|+|||+++++++|+++|+|++|-
T Consensus 8 d~~~C~iC~KTKFADG~Gh~C~yCk~r~CaRCGg~v~lr~~k~~WvC~lC~ 58 (62)
T 2a20_A 8 DAPTCGICHKTKFADGCGHNCSYCQTKFCARCGGRVSLRSNKVMWVCNLCR 58 (62)
T ss_dssp CCCCCSSSSCSCCCSSCCEEBTTTCCEECTTSEEEEESSTTCEEEEEHHHH
T ss_pred CcchhhhhccceeccCCCccccccCCeeecccCCEeeecCCeEEEEehhhh
Confidence 469999999999999999999999999999999999999999999999985
No 4
>2csz_A Synaptotagmin-like protein 4; exophilin 2, granuphilin, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.65 E-value=1.9e-18 Score=119.34 Aligned_cols=69 Identities=16% Similarity=0.231 Sum_probs=56.3
Q ss_pred HHHHHHHHHHHHHHhHHHHhhhCcccccccccccccc-ccCCCCCCCccccccccccCCceeecCCCCcceEEeeeccC
Q psy5308 54 KQDEVHLLEQSIRQRSEQQKKAGVELDATCHICLKTK-FADGVGHMCNYCNIRCCARCGGKVTLRSNKVSVEVTTRGHN 131 (137)
Q Consensus 54 L~~el~~lk~~~~~~~~~~r~~G~~~~~~C~~C~ktk-f~~g~G~~C~~C~~rvC~rCg~~v~lr~n~~~W~Ctvc~~~ 131 (137)
+++||++|++ ++..+..+.+.+++|++|++.+ |++++|++|.+|+++||++|+++. ++ ..|+|+||.+.
T Consensus 4 ~~~eL~elrr-----kgak~~s~~~~~r~CarC~~~LG~l~~~g~~C~~Ck~rVC~~Crv~~---~~-~~W~C~VC~k~ 73 (76)
T 2csz_A 4 GSSGLLEIKR-----KGAKRGSQHYSDRTCARCQESLGRLSPKTNTCRGCNHLVCRDCRIQE---SN-GTWRCKVCSGP 73 (76)
T ss_dssp CCCCCCCCCC-----CCSCSCCTTCCCCBCSSSCCBCSSSCTTTSEETTTTEECCTTSEEEC---ST-TCEEEHHHHSS
T ss_pred hHHHHHHHHH-----ccccCcCcCCCccchhhhCccccccccCCCcCcccChhhcccccccC---CC-CCEEEeeCchh
Confidence 5678888873 4555445567799999999998 888999999999999999999773 23 48999998765
No 5
>3bc1_B Synaptotagmin-like protein 2; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Homo sapiens}
Probab=99.10 E-value=2.4e-11 Score=80.16 Aligned_cols=41 Identities=22% Similarity=0.250 Sum_probs=38.8
Q ss_pred CCCCHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Q psy5308 23 SHLTLEERQIIESVMMRQKQEEERELEIMRRKQDEVHLLEQ 63 (137)
Q Consensus 23 S~LteeEr~~Il~VL~R~~~le~~E~~RirkL~~el~~lk~ 63 (137)
++|||+|+++||+||+||.++++.|++||++|++.|+++++
T Consensus 1 ~~l~e~E~~~IL~VL~RD~~lr~~ee~RIrkLk~~l~~~~~ 41 (59)
T 3bc1_B 1 GSPEFEEQEAIMKVLQRDAALKRAEEERVRHLPEKIKDDQQ 41 (59)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGTCCCHHH
T ss_pred CCCCHHHHHHHHHHHhhHHHHhhChHHHHHHHHHHhccHHH
Confidence 47899999999999999999999999999999999998875
No 6
>1joc_A EEA1, early endosomal autoantigen 1; FYVE domain, inositol 3-phosphate binding, membrane protein; HET: ITP; 2.20A {Homo sapiens} SCOP: g.50.1.1 h.1.21.1 PDB: 1hyi_A* 1hyj_A
Probab=96.87 E-value=0.0046 Score=44.97 Aligned_cols=50 Identities=26% Similarity=0.329 Sum_probs=38.2
Q ss_pred cccccccccccccCCCCCCCccccccccccCCceeecC--CCCcceEEeeec
Q psy5308 80 DATCHICLKTKFADGVGHMCNYCNIRCCARCGGKVTLR--SNKVSVEVTTRG 129 (137)
Q Consensus 80 ~~~C~~C~ktkf~~g~G~~C~~C~~rvC~rCg~~v~lr--~n~~~W~Ctvc~ 129 (137)
...|.+|++.+-.+.+-|.|..|-.-||+.|-.....- .+++.-+|..|-
T Consensus 69 ~~~C~~C~~~Fs~~~RrHHCR~CG~vfC~~Cs~~~~~~p~~~~p~RVC~~C~ 120 (125)
T 1joc_A 69 VQNCMACGKGFSVTVRRHHCRQCGNIFCAECSAKNALTPSSKKPVRVCDACF 120 (125)
T ss_dssp CCBCTTTCCBCCSSSCCEECTTTCCEECGGGSCEEECCTTCSSCEEECHHHH
T ss_pred CCCCcCcCCccccccccccCCCCCeEEChHHhCCccccCCCCCCCEeCHHHH
Confidence 56899999775445799999999999999998664222 234678888764
No 7
>2yw8_A RUN and FYVE domain-containing protein 1; structure genomics, structural genomics, NPPSFA; 3.00A {Homo sapiens} PDB: 2yqm_A
Probab=92.68 E-value=0.054 Score=36.34 Aligned_cols=51 Identities=20% Similarity=0.306 Sum_probs=37.8
Q ss_pred ccccccccccccccCCCCCCCccccccccccCCceee-c-CCCCcceEEeeec
Q psy5308 79 LDATCHICLKTKFADGVGHMCNYCNIRCCARCGGKVT-L-RSNKVSVEVTTRG 129 (137)
Q Consensus 79 ~~~~C~~C~ktkf~~g~G~~C~~C~~rvC~rCg~~v~-l-r~n~~~W~Ctvc~ 129 (137)
....|..|++.+-++.+-|.|..|-.-||+.|-.... + ..+++.-+|..|-
T Consensus 18 ~~~~C~~C~~~Fs~~~RrHHCR~CG~v~C~~Cs~~~~~l~~~~~~~RVC~~C~ 70 (82)
T 2yw8_A 18 EATHCRQCEKEFSISRRKHHCRNCGHIFCNTCSSNELALPSYPKPVRVCDSCH 70 (82)
T ss_dssp CCCBCTTTCCBCBTTBCCEECTTTCCEECSGGGCEEECCTTCSSCEEECHHHH
T ss_pred cCCcccCcCCcccCccccccCCCCCCEEChHHhCCeeecCCCCCcCEECHHHH
Confidence 3578999997754457999999999999999976531 1 1234677887764
No 8
>1wfk_A Zinc finger, FYVE domain containing 19; riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function; NMR {Mus musculus} SCOP: g.50.1.1
Probab=91.23 E-value=0.066 Score=36.64 Aligned_cols=53 Identities=13% Similarity=0.159 Sum_probs=38.1
Q ss_pred ccccccccccccccccCCCCCCCccccccccccCCcee-ecCC--CCcceEEeeec
Q psy5308 77 VELDATCHICLKTKFADGVGHMCNYCNIRCCARCGGKV-TLRS--NKVSVEVTTRG 129 (137)
Q Consensus 77 ~~~~~~C~~C~ktkf~~g~G~~C~~C~~rvC~rCg~~v-~lr~--n~~~W~Ctvc~ 129 (137)
......|..|++.+-.+.+-|.|..|-.-||+.|-... .+.. +.+.-+|..|-
T Consensus 6 ~~~~~~C~~C~~~F~~~~RrHHCR~CG~vfC~~Cs~~~~~lp~~g~~~~RVC~~C~ 61 (88)
T 1wfk_A 6 SGMESRCYGCAVKFTLFKKEYGCKNCGRAFCNGCLSFSALVPRAGNTQQKVCKQCH 61 (88)
T ss_dssp CCCCSBCTTTCCBCCSSSCEEECSSSCCEEETTTSCEEEEETTTTSEEEEECHHHH
T ss_pred CCcCCCCcCcCCcccCccccccCCCCCCEEChhHcCCceeccccCCCcCEECHHHH
Confidence 33467899999765455799999999999999997652 2221 23567777764
No 9
>1x4u_A Zinc finger, FYVE domain containing 27 isoform B; phosphoinositide binding, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=90.11 E-value=0.17 Score=33.87 Aligned_cols=34 Identities=24% Similarity=0.424 Sum_probs=28.9
Q ss_pred cccccccccccccCCCCCCCccccccccccCCce
Q psy5308 80 DATCHICLKTKFADGVGHMCNYCNIRCCARCGGK 113 (137)
Q Consensus 80 ~~~C~~C~ktkf~~g~G~~C~~C~~rvC~rCg~~ 113 (137)
...|..|++.+-++.+-|.|..|-.-||+.|-..
T Consensus 14 ~~~C~~C~~~F~~~~RrHHCR~CG~vfC~~Cs~~ 47 (84)
T 1x4u_A 14 FGNCTGCSATFSVLKKRRSCSNCGNSFCSRCCSF 47 (84)
T ss_dssp CSSCSSSCCCCCSSSCCEECSSSCCEECTTTSCE
T ss_pred CCcCcCcCCccccchhhhhhcCCCcEEChhhcCC
Confidence 5789999977544579999999999999999764
No 10
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*
Probab=89.32 E-value=0.08 Score=41.50 Aligned_cols=50 Identities=22% Similarity=0.339 Sum_probs=37.1
Q ss_pred cccccccccccccCCCCCCCccccccccccCCcee-ecC---CCCcceEEeeec
Q psy5308 80 DATCHICLKTKFADGVGHMCNYCNIRCCARCGGKV-TLR---SNKVSVEVTTRG 129 (137)
Q Consensus 80 ~~~C~~C~ktkf~~g~G~~C~~C~~rvC~rCg~~v-~lr---~n~~~W~Ctvc~ 129 (137)
+..|..|++.+-.+.+-|.|..|-.-||+.|-... .+. .+.+.-+|..|-
T Consensus 164 ~~~C~~C~~~F~~~~RrhHCR~CG~v~C~~Cs~~~~~~p~~~~~~~~RVC~~C~ 217 (226)
T 3zyq_A 164 AEECHRCRVQFGVMTRKHHCRACGQIFCGKCSSKYSTIPKFGIEKEVRVCEPCY 217 (226)
T ss_dssp CSBCTTTCCBCBTTBCCEECTTTCCEECTTTCCEEEEEGGGTEEEEEEECHHHH
T ss_pred CCCCcCcCCCCCccccccccCCCcCEeChhhcCCcccCCCCCCCCCCEeCHHHH
Confidence 46899999765445799999999999999998653 221 124677888764
No 11
>1z2q_A LM5-1; membrane protein, FYVE domain, zinc-finger; NMR {Leishmania major}
Probab=88.67 E-value=0.18 Score=33.90 Aligned_cols=50 Identities=14% Similarity=0.252 Sum_probs=36.6
Q ss_pred cccccccccccccCCCCCCCccccccccccCCcee-ecCC---CCcceEEeeec
Q psy5308 80 DATCHICLKTKFADGVGHMCNYCNIRCCARCGGKV-TLRS---NKVSVEVTTRG 129 (137)
Q Consensus 80 ~~~C~~C~ktkf~~g~G~~C~~C~~rvC~rCg~~v-~lr~---n~~~W~Ctvc~ 129 (137)
...|..|++.+-.+.+-|.|..|-.-||+.|-... .+.. +++.-+|..|-
T Consensus 21 ~~~C~~C~~~Fs~~~RrHHCR~CG~v~C~~Cs~~~~~lp~~~~~~~~RVC~~C~ 74 (84)
T 1z2q_A 21 APACNGCGCVFTTTVRRHHCRNCGYVLCGDCSRHRAAIPMRGITEPERVCDACY 74 (84)
T ss_dssp CCBCTTTCCBCCTTSCCEECTTTCCEECTGGGCCEEEETTTTEEEEEECCHHHH
T ss_pred CCCCcCcCCccccchhcccccCCCcEEChHHhCCeEeccCCCCCCCCEECHHHH
Confidence 57899999876445799999999999999997553 2221 23566777754
No 12
>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1
Probab=88.17 E-value=0.12 Score=40.05 Aligned_cols=50 Identities=22% Similarity=0.332 Sum_probs=36.8
Q ss_pred cccccccccccccCCCCCCCccccccccccCCceee-cC---CCCcceEEeeec
Q psy5308 80 DATCHICLKTKFADGVGHMCNYCNIRCCARCGGKVT-LR---SNKVSVEVTTRG 129 (137)
Q Consensus 80 ~~~C~~C~ktkf~~g~G~~C~~C~~rvC~rCg~~v~-lr---~n~~~W~Ctvc~ 129 (137)
...|..|++.+-.+.+-|.|..|-.-||+.|-.... +. .+++.-+|..|-
T Consensus 161 ~~~C~~C~~~F~~~~rrhhCr~CG~v~C~~Cs~~~~~~~~~~~~~~~RvC~~C~ 214 (220)
T 1dvp_A 161 GRVCHRCRVEFTFTNRKHHCRNCGQVFCGQCTAKQCPLPKYGIEKEVRVCDGCF 214 (220)
T ss_dssp CSBCTTTCCBCCSSSCCEECTTTCCEECSTTSCEEEEEGGGTEEEEEEECHHHH
T ss_pred CCccCCCCCccCCcccccccCCcCCEEChHHhCCeeecCcCCCCCCCEeCHHHH
Confidence 478999997654457999999999999999976532 11 123566787763
No 13
>3t7l_A Zinc finger FYVE domain-containing protein 16; structural genomics consortium, SGC, lipid BIND protein, transport protein; 1.09A {Homo sapiens}
Probab=88.16 E-value=0.19 Score=34.32 Aligned_cols=49 Identities=18% Similarity=0.318 Sum_probs=36.2
Q ss_pred cccccccccccccCCCCCCCccccccccccCCceee-cC-CCCcceEEeee
Q psy5308 80 DATCHICLKTKFADGVGHMCNYCNIRCCARCGGKVT-LR-SNKVSVEVTTR 128 (137)
Q Consensus 80 ~~~C~~C~ktkf~~g~G~~C~~C~~rvC~rCg~~v~-lr-~n~~~W~Ctvc 128 (137)
...|.+|++....+.+-|.|..|-.-||..|-.... +. .+++.-+|..|
T Consensus 20 ~~~C~~C~~~F~~~~RrhhCr~CG~v~C~~Cs~~~~~l~~~~~~~RVC~~C 70 (90)
T 3t7l_A 20 APNCMNCQVKFTFTKRRHHCRACGKVFCGVCCNRKCKLQYLEKEARVCVVC 70 (90)
T ss_dssp CCBCTTTCCBCCSSSCCEECTTTCCEECGGGSCEEEEETTTTEEEEECHHH
T ss_pred CCcCcCCCCcccchhhCccccCCCCEECCcccCCeeecCCCCCCCeECHHH
Confidence 467999997765557999999999999999976642 11 12356677765
No 14
>1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS), leukemia, transcription regulation; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=87.80 E-value=0.43 Score=28.99 Aligned_cols=27 Identities=19% Similarity=0.312 Sum_probs=16.2
Q ss_pred cccccccccccccCCCCCCCccccccccccC
Q psy5308 80 DATCHICLKTKFADGVGHMCNYCNIRCCARC 110 (137)
Q Consensus 80 ~~~C~~C~ktkf~~g~G~~C~~C~~rvC~rC 110 (137)
..+|.||... |.+.. =-.|.|.||..|
T Consensus 6 ~~~C~IC~~~-~~~p~---~l~CgH~fC~~C 32 (56)
T 1bor_A 6 FLRCQQCQAE-AKCPK---LLPCLHTLCSGC 32 (56)
T ss_dssp CSSCSSSCSS-CBCCS---CSTTSCCSBTTT
T ss_pred CCCceEeCCc-cCCeE---EcCCCCcccHHH
Confidence 5789999854 33321 123566666666
No 15
>1vfy_A Phosphatidylinositol-3-phosphate binding FYVE domain of protein VPS27; endosome maturation, intracellular trafficking; 1.15A {Saccharomyces cerevisiae} SCOP: g.50.1.1
Probab=87.49 E-value=0.19 Score=32.89 Aligned_cols=50 Identities=18% Similarity=0.234 Sum_probs=36.7
Q ss_pred cccccccccccccCCCCCCCccccccccccCCcee-ecCC---CCcceEEeeec
Q psy5308 80 DATCHICLKTKFADGVGHMCNYCNIRCCARCGGKV-TLRS---NKVSVEVTTRG 129 (137)
Q Consensus 80 ~~~C~~C~ktkf~~g~G~~C~~C~~rvC~rCg~~v-~lr~---n~~~W~Ctvc~ 129 (137)
+..|..|++.+-.+.+-|.|..|-.-||+.|-... .+.. ..+.-+|..|-
T Consensus 11 ~~~C~~C~~~F~~~~RrHHCR~CG~v~C~~Cs~~~~~lp~~~~~~~~RVC~~C~ 64 (73)
T 1vfy_A 11 SDACMICSKKFSLLNRKHHCRSCGGVFCQEHSSNSIPLPDLGIYEPVRVCDSCF 64 (73)
T ss_dssp CSBCTTTCCBCBTTBCCEECTTTCCEECGGGSCEEEEEGGGTEEEEEEECHHHH
T ss_pred CCcccCCCCccCCccccccCCCCCEEEcccccCCeEEcccCCCCCCCEECHHHH
Confidence 36899999775455799999999999999997542 2221 23567787764
No 16
>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A
Probab=86.80 E-value=0.21 Score=29.51 Aligned_cols=47 Identities=15% Similarity=0.173 Sum_probs=28.9
Q ss_pred ccccccccccccccCCCCCCCccccccccccCCceeecCCCCcceEEeeec
Q psy5308 79 LDATCHICLKTKFADGVGHMCNYCNIRCCARCGGKVTLRSNKVSVEVTTRG 129 (137)
Q Consensus 79 ~~~~C~~C~ktkf~~g~G~~C~~C~~rvC~rCg~~v~lr~n~~~W~Ctvc~ 129 (137)
.+..|.||.......+....-..|.|.||..|-...... ...|.+|-
T Consensus 4 ~~~~C~IC~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~----~~~CP~Cr 50 (55)
T 2ecm_A 4 GSSGCPICLEDIHTSRVVAHVLPCGHLLHRTCYEEMLKE----GYRCPLCS 50 (55)
T ss_dssp CCCSCTTTCCCCCTTTSCEEECTTSCEEETTHHHHHHHH----TCCCTTSC
T ss_pred CCCcCcccChhhcCCCcCeEecCCCCcccHHHHHHHHHc----CCcCCCCC
Confidence 467899999664332333455668999999995443211 14566654
No 17
>2vrw_B P95VAV, VAV1, proto-oncogene VAV; lipoprotein, GTP-binding, metal-binding, phosphoprotein, exchange factor, RAC, GTPase, membrane domain; 1.85A {Mus musculus} PDB: 3bji_A 1f5x_A
Probab=86.53 E-value=0.15 Score=41.99 Aligned_cols=35 Identities=23% Similarity=0.439 Sum_probs=29.7
Q ss_pred cccccccccccc-cCCCCCCCccccccccccCCcee
Q psy5308 80 DATCHICLKTKF-ADGVGHMCNYCNIRCCARCGGKV 114 (137)
Q Consensus 80 ~~~C~~C~ktkf-~~g~G~~C~~C~~rvC~rCg~~v 114 (137)
...|..|++... ....|+.|..|...||.+|...|
T Consensus 357 ~t~C~~C~~~~~g~~~qg~~C~~C~~~~h~~C~~~~ 392 (406)
T 2vrw_B 357 TTSCKACQMLLRGTFYQGYRCYRCRAPAHKECLGRV 392 (406)
T ss_dssp CCBCTTTCCBCCSSSSCEEEETTTCCEECGGGGGGS
T ss_pred CCCCccccchhceeCCCCCCCCCCcCccchhhhhhC
Confidence 578999997763 45699999999999999997664
No 18
>1y02_A CARP2, FYVE-ring finger protein sakura; zinc-binding module, phosphoinositide binding, caspase regulation, metal binding protein; 1.80A {Homo sapiens} SCOP: a.140.2.1 g.50.1.1
Probab=85.38 E-value=0.15 Score=37.08 Aligned_cols=46 Identities=15% Similarity=0.319 Sum_probs=32.8
Q ss_pred ccccccccccccccCCCCCCCccccccccccCCceeecCCCCcceEEeee
Q psy5308 79 LDATCHICLKTKFADGVGHMCNYCNIRCCARCGGKVTLRSNKVSVEVTTR 128 (137)
Q Consensus 79 ~~~~C~~C~ktkf~~g~G~~C~~C~~rvC~rCg~~v~lr~n~~~W~Ctvc 128 (137)
....|..|+...-.+.+-|.|..|-.-||+.|-.. +. .+.-+|..|
T Consensus 18 ~~~~C~~C~~~Fs~~~RkHHCR~CG~ifC~~Cs~~---~~-~~vRVC~~C 63 (120)
T 1y02_A 18 LEPSCKSCGAHFANTARKQTCLDCKKNFCMTCSSQ---VG-NGPRLCLLC 63 (120)
T ss_dssp --CCCTTTCCCCSSGGGCEECTTTCCEECGGGEEC--------CCEEHHH
T ss_pred ccCcccCcCCccccccccccCCCCCCeeCHHHhCC---CC-CCceECHHH
Confidence 35789999966433569999999999999999644 22 236788886
No 19
>3j20_Y 30S ribosomal protein S27AE; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=83.63 E-value=0.23 Score=30.89 Aligned_cols=29 Identities=21% Similarity=0.367 Sum_probs=18.7
Q ss_pred cccccccCCceeecCCCCcceEEeeeccC
Q psy5308 103 NIRCCARCGGKVTLRSNKVSVEVTTRGHN 131 (137)
Q Consensus 103 ~~rvC~rCg~~v~lr~n~~~W~Ctvc~~~ 131 (137)
..++|.+||..+...++...|.|.-|++.
T Consensus 18 ~~k~CP~CG~~~fm~~~~~R~~C~kCG~t 46 (50)
T 3j20_Y 18 KNKFCPRCGPGVFMADHGDRWACGKCGYT 46 (50)
T ss_dssp SSEECSSSCSSCEEEECSSEEECSSSCCE
T ss_pred ecccCCCCCCceEEecCCCeEECCCCCCE
Confidence 45777777764444455567777777654
No 20
>3j21_g 50S ribosomal protein L40E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=83.24 E-value=0.29 Score=30.87 Aligned_cols=27 Identities=19% Similarity=0.320 Sum_probs=20.2
Q ss_pred ccccccccCCceeecCCCCcceEEeeeccCC
Q psy5308 102 CNIRCCARCGGKVTLRSNKVSVEVTTRGHNN 132 (137)
Q Consensus 102 C~~rvC~rCg~~v~lr~n~~~W~Ctvc~~~~ 132 (137)
.+..+|.+|+.++ . .+ +|.|.-|+|-+
T Consensus 12 ~~k~iCpkC~a~~--~-~g-aw~CrKCG~~~ 38 (51)
T 3j21_g 12 FKKYVCLRCGATN--P-WG-AKKCRKCGYKR 38 (51)
T ss_dssp SSEEECTTTCCEE--C-TT-CSSCSSSSSCC
T ss_pred hCCccCCCCCCcC--C-CC-ceecCCCCCcc
Confidence 3568899998774 3 23 89999998874
No 21
>2yho_A E3 ubiquitin-protein ligase mylip; ligase, E2 ligase-E3 ligase complex, ring zinc-finger, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 2yhn_A
Probab=78.41 E-value=1.7 Score=28.35 Aligned_cols=35 Identities=26% Similarity=0.717 Sum_probs=23.0
Q ss_pred ccccccccccc---ccCCCCCC--Cccccc--cccccCCcee
Q psy5308 80 DATCHICLKTK---FADGVGHM--CNYCNI--RCCARCGGKV 114 (137)
Q Consensus 80 ~~~C~~C~ktk---f~~g~G~~--C~~C~~--rvC~rCg~~v 114 (137)
+..|.+|.... ....+||. |..|-. ..|.-|+..+
T Consensus 18 ~~~C~IC~~~~~~~v~~pCgH~~~C~~C~~~~~~CP~Cr~~i 59 (79)
T 2yho_A 18 AMLCMVCCEEEINSTFCPCGHTVCCESCAAQLQSCPVCRSRV 59 (79)
T ss_dssp HTBCTTTSSSBCCEEEETTCBCCBCHHHHTTCSBCTTTCCBC
T ss_pred CCEeEEeCcccCcEEEECCCCHHHHHHHHHhcCcCCCCCchh
Confidence 46799998542 11368886 778843 4577777655
No 22
>3mpx_A FYVE, rhogef and PH domain-containing protein 5; structural genomics consortium, DH domain, SGC, L binding protein; 2.80A {Homo sapiens}
Probab=78.19 E-value=0.43 Score=39.34 Aligned_cols=108 Identities=14% Similarity=0.146 Sum_probs=16.4
Q ss_pred CCCCCCCHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH-H-HhhhCccccccccccccccccCCCCC
Q psy5308 20 PDLSHLTLEERQIIESVMMRQKQEEERELEIMRRKQDEVHLLEQSIRQRSE-Q-QKKAGVELDATCHICLKTKFADGVGH 97 (137)
Q Consensus 20 ~dLS~LteeEr~~Il~VL~R~~~le~~E~~RirkL~~el~~lk~~~~~~~~-~-~r~~G~~~~~~C~~C~ktkf~~g~G~ 97 (137)
.-|..-|++|++.=+..|.+.-+..... +........ .++++......+ . +.-..+.....|..|++..-...+.|
T Consensus 315 ~~l~a~s~~ek~~W~~~i~~ai~e~~~~-~~~~~f~~~-~e~~~~~~~~~~~~~p~w~~~~~~~~c~~c~~~f~~~~r~h 392 (434)
T 3mpx_A 315 LMLSASSCAERDEWYGCLSRALPEDYKA-QALAAFHHS-VEIRERLGVSLGERPPTLVPVTHVMMCMNCGCDFSLTLRRH 392 (434)
T ss_dssp EEEECSSHHHHHHHHHHHHHC-----------------------------------------------------------
T ss_pred EEEecCCHHHHHHHHHHHHHHHHHHHhh-hcccccCCc-cchhhcccCccccCCCcCCCcccCCcCCCcCCCCCCcchhh
Confidence 4467779999998888886654432111 111000000 011110000000 0 00011122578999997653446899
Q ss_pred CCccccccccccCCcee-ecC--CCCcceEEeeec
Q psy5308 98 MCNYCNIRCCARCGGKV-TLR--SNKVSVEVTTRG 129 (137)
Q Consensus 98 ~C~~C~~rvC~rCg~~v-~lr--~n~~~W~Ctvc~ 129 (137)
.|..|-.-||..|-..- .+. .+++.=+|..|-
T Consensus 393 ~Cr~Cg~~~C~~Cs~~~~~~~~~~~~~~rvC~~C~ 427 (434)
T 3mpx_A 393 HCHACGKIVCRNCSRNKYPLKYLKDRMAKVCDGCF 427 (434)
T ss_dssp -----------------------------------
T ss_pred hcccCcCEeehhhCCCeeeCCCCCCCcCEecHHHH
Confidence 99999999999997432 221 123456777753
No 23
>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1
Probab=78.03 E-value=0.8 Score=26.89 Aligned_cols=46 Identities=15% Similarity=0.193 Sum_probs=27.8
Q ss_pred cccccccccccccCCCCCCCccccccccccCCceeecCCCCcceEEeeec
Q psy5308 80 DATCHICLKTKFADGVGHMCNYCNIRCCARCGGKVTLRSNKVSVEVTTRG 129 (137)
Q Consensus 80 ~~~C~~C~ktkf~~g~G~~C~~C~~rvC~rCg~~v~lr~n~~~W~Ctvc~ 129 (137)
+..|.||............-..|.|.||..|-.... .. ...|.+|-
T Consensus 5 ~~~C~IC~~~~~~~~~~~~~~~C~H~f~~~Ci~~w~-~~---~~~CP~Cr 50 (55)
T 1iym_A 5 GVECAVCLAELEDGEEARFLPRCGHGFHAECVDMWL-GS---HSTCPLCR 50 (55)
T ss_dssp SCCCTTTCCCCCTTSCCEECSSSCCEECTTHHHHTT-TT---CCSCSSSC
T ss_pred CCcCccCCccccCCCceEECCCCCCcccHHHHHHHH-Hc---CCcCcCCC
Confidence 578999986533222223334699999999964432 21 24577653
No 24
>4ayc_A E3 ubiquitin-protein ligase RNF8; DNA damage, K63 chains; HET: CPQ; 1.90A {Homo sapiens} PDB: 4epo_C
Probab=77.68 E-value=6.2 Score=27.75 Aligned_cols=29 Identities=28% Similarity=0.661 Sum_probs=17.7
Q ss_pred cccccccccccccCCCCCCCccccccccccCCc
Q psy5308 80 DATCHICLKTKFADGVGHMCNYCNIRCCARCGG 112 (137)
Q Consensus 80 ~~~C~~C~ktkf~~g~G~~C~~C~~rvC~rCg~ 112 (137)
+.+|.||... |.+.. . -.|.|.||..|-.
T Consensus 53 ~~~C~iC~~~-~~~~~--~-~~CgH~fc~~Ci~ 81 (138)
T 4ayc_A 53 ELQCIICSEY-FIEAV--T-LNCAHSFCSYCIN 81 (138)
T ss_dssp HSBCTTTCSB-CSSEE--E-ETTSCEEEHHHHH
T ss_pred cCCCcccCcc-cCCce--E-CCCCCCccHHHHH
Confidence 4689999855 33321 1 2466777777743
No 25
>3ky9_A Proto-oncogene VAV; calponin homology domain, DBL homology domain, pleckst homology domain, C1 domain, guanine-nucleotide releasing FA metal-binding; 2.73A {Homo sapiens} PDB: 2d86_A
Probab=73.67 E-value=0.81 Score=39.80 Aligned_cols=35 Identities=23% Similarity=0.451 Sum_probs=29.1
Q ss_pred ccccccccccc-ccCCCCCCCccccccccccCCcee
Q psy5308 80 DATCHICLKTK-FADGVGHMCNYCNIRCCARCGGKV 114 (137)
Q Consensus 80 ~~~C~~C~ktk-f~~g~G~~C~~C~~rvC~rCg~~v 114 (137)
...|.+|++.. .....|+.|..|...||.+|...+
T Consensus 529 ~t~C~~C~~~l~gl~~qg~~C~~C~~~vHk~C~~~v 564 (587)
T 3ky9_A 529 TTSCKACQMLLRGTFYQGYRCHRCRASAHKECLGRV 564 (587)
T ss_dssp CCBCTTTCSBCCSSSCCEEEETTTCCEECSGGGGGS
T ss_pred CcccccccccccccccCCcCCCCCCCccchhhhhcC
Confidence 57899998765 234599999999999999998765
No 26
>1z6u_A NP95-like ring finger protein isoform B; structural genomics consortium, ligase, ubiquitin-protein ligase, cell cycle regulation, SGC; 2.10A {Homo sapiens}
Probab=70.78 E-value=6.4 Score=28.50 Aligned_cols=27 Identities=22% Similarity=0.518 Sum_probs=14.8
Q ss_pred cccccccccccccCCCCCCCccccccccccC
Q psy5308 80 DATCHICLKTKFADGVGHMCNYCNIRCCARC 110 (137)
Q Consensus 80 ~~~C~~C~ktkf~~g~G~~C~~C~~rvC~rC 110 (137)
...|.||... |.+..- -.|.|.||..|
T Consensus 78 ~~~C~IC~~~-~~~pv~---~~CgH~fC~~C 104 (150)
T 1z6u_A 78 SFMCVCCQEL-VYQPVT---TECFHNVCKDC 104 (150)
T ss_dssp HTBCTTTSSB-CSSEEE---CTTSCEEEHHH
T ss_pred CCEeecCChh-hcCCEE---cCCCCchhHHH
Confidence 4789999855 332111 24555555555
No 27
>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens}
Probab=68.99 E-value=3.2 Score=28.52 Aligned_cols=10 Identities=20% Similarity=0.524 Sum_probs=8.0
Q ss_pred cccccccccc
Q psy5308 80 DATCHICLKT 89 (137)
Q Consensus 80 ~~~C~~C~kt 89 (137)
.-+|.||...
T Consensus 52 ~~~C~IC~~~ 61 (124)
T 3fl2_A 52 TFQCICCQEL 61 (124)
T ss_dssp HTBCTTTSSB
T ss_pred CCCCCcCChH
Confidence 4789999865
No 28
>2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn binding domain, metal zinc, zinc-finger, metal binding protein; NMR {Homo sapiens}
Probab=68.26 E-value=1.1 Score=27.51 Aligned_cols=33 Identities=21% Similarity=0.414 Sum_probs=22.2
Q ss_pred cccccccccccccCCCCCCCccccccccccCCce
Q psy5308 80 DATCHICLKTKFADGVGHMCNYCNIRCCARCGGK 113 (137)
Q Consensus 80 ~~~C~~C~ktkf~~g~G~~C~~C~~rvC~rCg~~ 113 (137)
...|.||... |..+.......|.|.||..|-..
T Consensus 14 ~~~C~IC~~~-~~~~~~~~~~~C~H~fc~~Ci~~ 46 (69)
T 2kiz_A 14 EEKCTICLSI-LEEGEDVRRLPCMHLFHQVCVDQ 46 (69)
T ss_dssp CCSBTTTTBC-CCSSSCEEECTTSCEEEHHHHHH
T ss_pred CCCCeeCCcc-ccCCCcEEEeCCCCHHHHHHHHH
Confidence 5789999854 43333334456888999888544
No 29
>1vq8_Z 50S ribosomal protein L37AE; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: g.41.8.1 PDB: 1vq4_Z* 1vq6_Z* 1vq5_Z* 1vq7_Z* 1vq9_Z* 1vqk_Z* 1vql_Z* 1vqm_Z* 1vqn_Z* 1vqo_Z* 1vqp_Z* 1yhq_Z* 1yi2_Z* 1yij_Z* 1yit_Z* 1yj9_Z* 1yjn_Z* 1yjw_Z* 2qa4_Z* 1s72_Z* ...
Probab=67.22 E-value=1.4 Score=29.97 Aligned_cols=27 Identities=33% Similarity=0.663 Sum_probs=15.7
Q ss_pred ccccccccccc-ccCCCCCCCccccccccccCCce
Q psy5308 80 DATCHICLKTK-FADGVGHMCNYCNIRCCARCGGK 113 (137)
Q Consensus 80 ~~~C~~C~ktk-f~~g~G~~C~~C~~rvC~rCg~~ 113 (137)
.-.|.-|++.. |-.+.| .-.|..||..
T Consensus 27 ~y~Cp~CG~~~v~r~atG-------iW~C~~Cg~~ 54 (83)
T 1vq8_Z 27 DHACPNCGEDRVDRQGTG-------IWQCSYCDYK 54 (83)
T ss_dssp CEECSSSCCEEEEEEETT-------EEEETTTCCE
T ss_pred cCcCCCCCCcceeccCCC-------eEECCCCCCE
Confidence 46788888765 433343 4555555544
No 30
>1pft_A TFIIB, PFTFIIBN; N-terminal domain, transcription initiation factor; NMR {Pyrococcus furiosus} SCOP: g.41.3.1
Probab=65.84 E-value=3.6 Score=24.54 Aligned_cols=8 Identities=50% Similarity=1.178 Sum_probs=4.0
Q ss_pred cccccCCc
Q psy5308 105 RCCARCGG 112 (137)
Q Consensus 105 rvC~rCg~ 112 (137)
.||..||.
T Consensus 25 lvC~~CG~ 32 (50)
T 1pft_A 25 IVCAKCGY 32 (50)
T ss_dssp EEESSSCC
T ss_pred EECcccCC
Confidence 45555554
No 31
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=62.76 E-value=3.6 Score=27.56 Aligned_cols=26 Identities=12% Similarity=0.256 Sum_probs=13.3
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5308 39 RQKQEEERELEIMRRKQDEVHLLEQSI 65 (137)
Q Consensus 39 R~~~le~~E~~RirkL~~el~~lk~~~ 65 (137)
++++++.++ ++|+.|..+|.+....|
T Consensus 31 K~eELr~kd-~~I~eLEk~L~ekd~eI 56 (72)
T 3nmd_A 31 KIEELRQRD-ALIDELELELDQKDELI 56 (72)
T ss_dssp HHHHHHHHH-HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHH-HHHHHHHHHHHHHHHHH
Confidence 444455444 34666666655544433
No 32
>1wim_A KIAA0161 protein; ring finger domain, UBCM4-interacting protein 4, UIP4, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=62.41 E-value=1 Score=29.75 Aligned_cols=31 Identities=19% Similarity=0.432 Sum_probs=19.5
Q ss_pred cccccccccccccCCCCCCCccccccccccCC
Q psy5308 80 DATCHICLKTKFADGVGHMCNYCNIRCCARCG 111 (137)
Q Consensus 80 ~~~C~~C~ktkf~~g~G~~C~~C~~rvC~rCg 111 (137)
.-+|.||.... .+.....-..|.|.||..|=
T Consensus 5 ~~~C~IC~~~~-~~~~~~~l~~CgH~FC~~Cl 35 (94)
T 1wim_A 5 SSGCKLCLGEY-PVEQMTTIAQCQCIFCTLCL 35 (94)
T ss_dssp BCCCSSSCCCC-BGGGEEEETTTTEEEEHHHH
T ss_pred CcCCcccCccc-ccccceEcCCCCCcccHHHH
Confidence 57899999653 22211111258889999993
No 33
>2k4x_A 30S ribosomal protein S27AE; metal-binding, ribonucleoprotein, zinc, zinc-finger, structural genomics, PSI-2; NMR {Thermoplasma acidophilum} SCOP: g.41.8.8
Probab=61.24 E-value=1.7 Score=27.33 Aligned_cols=9 Identities=11% Similarity=-0.005 Sum_probs=4.2
Q ss_pred ceEEeeecc
Q psy5308 122 SVEVTTRGH 130 (137)
Q Consensus 122 ~W~Ctvc~~ 130 (137)
.|.|.-|++
T Consensus 36 r~~C~kCgy 44 (55)
T 2k4x_A 36 RYSCGRCGY 44 (55)
T ss_dssp EEECTTTCC
T ss_pred EEECCCCCC
Confidence 455544443
No 34
>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=60.91 E-value=1.6 Score=27.44 Aligned_cols=46 Identities=17% Similarity=0.226 Sum_probs=28.4
Q ss_pred cccccccccccccCCCCCCCccccccccccCCceeecCCCCcceEEeeecc
Q psy5308 80 DATCHICLKTKFADGVGHMCNYCNIRCCARCGGKVTLRSNKVSVEVTTRGH 130 (137)
Q Consensus 80 ~~~C~~C~ktkf~~g~G~~C~~C~~rvC~rCg~~v~lr~n~~~W~Ctvc~~ 130 (137)
...|.||... |..+.......|.|.||..|-...... ...|.+|-.
T Consensus 23 ~~~C~IC~~~-~~~~~~~~~l~C~H~fh~~Ci~~w~~~----~~~CP~Cr~ 68 (75)
T 1x4j_A 23 QTLCVVCMCD-FESRQLLRVLPCNHEFHAKCVDKWLKA----NRTCPICRA 68 (75)
T ss_dssp CCEETTTTEE-CCBTCEEEEETTTEEEETTHHHHHHHH----CSSCTTTCC
T ss_pred CCCCeECCcc-cCCCCeEEEECCCCHhHHHHHHHHHHc----CCcCcCcCC
Confidence 5789999955 443333344568999999995443211 135777543
No 35
>2yrc_A Protein transport protein SEC23A; zinc binding, copii, coat protein complex-II, endoplasmic reticulum, golgi, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2yrd_A
Probab=60.67 E-value=1.6 Score=27.87 Aligned_cols=12 Identities=8% Similarity=-0.247 Sum_probs=9.6
Q ss_pred cceEEeeeccCC
Q psy5308 121 VSVEVTTRGHNN 132 (137)
Q Consensus 121 ~~W~Ctvc~~~~ 132 (137)
..|+|.+|...|
T Consensus 32 ~~W~C~~C~~~N 43 (59)
T 2yrc_A 32 KLWACNFCYQRN 43 (59)
T ss_dssp TEEECSSSCCEE
T ss_pred CEEEcccCCCcC
Confidence 479999987655
No 36
>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=59.97 E-value=3.2 Score=25.99 Aligned_cols=46 Identities=15% Similarity=0.161 Sum_probs=27.3
Q ss_pred cccccccccccccCCCCCCCccccccccccCCceeecCCCCcceEEeeecc
Q psy5308 80 DATCHICLKTKFADGVGHMCNYCNIRCCARCGGKVTLRSNKVSVEVTTRGH 130 (137)
Q Consensus 80 ~~~C~~C~ktkf~~g~G~~C~~C~~rvC~rCg~~v~lr~n~~~W~Ctvc~~ 130 (137)
...|.||... |..+....=..|.|.||..|-.... .. ...|.+|-.
T Consensus 15 ~~~C~IC~~~-~~~~~~~~~~~C~H~fc~~Ci~~~~-~~---~~~CP~Cr~ 60 (78)
T 2ect_A 15 GLECPVCKED-YALGESVRQLPCNHLFHDSCIVPWL-EQ---HDSCPVCRK 60 (78)
T ss_dssp SCCCTTTTSC-CCTTSCEEECTTSCEEETTTTHHHH-TT---TCSCTTTCC
T ss_pred CCCCeeCCcc-ccCCCCEEEeCCCCeecHHHHHHHH-Hc---CCcCcCcCC
Confidence 5789999865 3322221112488999999965542 21 246777643
No 37
>1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=56.92 E-value=3.2 Score=27.58 Aligned_cols=46 Identities=22% Similarity=0.352 Sum_probs=25.8
Q ss_pred cccccccccccccCCCCCCCccccccccccCCceeecCCCCcceEEeeecc
Q psy5308 80 DATCHICLKTKFADGVGHMCNYCNIRCCARCGGKVTLRSNKVSVEVTTRGH 130 (137)
Q Consensus 80 ~~~C~~C~ktkf~~g~G~~C~~C~~rvC~rCg~~v~lr~n~~~W~Ctvc~~ 130 (137)
...|.||... |.+..- ..|.|.||..|-....... .....|.+|..
T Consensus 21 ~~~C~IC~~~-~~~p~~---~~CgH~fC~~Ci~~~~~~~-~~~~~CP~Cr~ 66 (112)
T 1jm7_A 21 ILECPICLEL-IKEPVS---TKCDHIFCKFCMLKLLNQK-KGPSQCPLCKN 66 (112)
T ss_dssp HTSCSSSCCC-CSSCCB---CTTSCCCCSHHHHHHHHSS-SSSCCCTTTSC
T ss_pred CCCCcccChh-hcCeEE---CCCCCHHHHHHHHHHHHhC-CCCCCCcCCCC
Confidence 4679999854 333211 2577888888854432221 12356777644
No 38
>2elj_A Transcriptional adapter 2; YDR448W, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Saccharomyces cerevisiae}
Probab=56.72 E-value=8.2 Score=26.11 Aligned_cols=18 Identities=28% Similarity=0.433 Sum_probs=15.2
Q ss_pred CCCCCCCCCCCHHHHHHH
Q psy5308 16 ADIIPDLSHLTLEERQII 33 (137)
Q Consensus 16 ~~~~~dLS~LteeEr~~I 33 (137)
...+||+..||++|++.-
T Consensus 14 i~~~p~~~lLs~~E~~LC 31 (88)
T 2elj_A 14 IQHAPDYALLSNDEQQLC 31 (88)
T ss_dssp HHTSTTCSSSCHHHHHHH
T ss_pred cccCCCchhcCHHHHHHH
Confidence 357999999999999863
No 39
>1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B
Probab=56.37 E-value=4.4 Score=26.41 Aligned_cols=32 Identities=22% Similarity=0.459 Sum_probs=17.1
Q ss_pred cccccccccccccc-CCCCCCCccccccccccCC
Q psy5308 79 LDATCHICLKTKFA-DGVGHMCNYCNIRCCARCG 111 (137)
Q Consensus 79 ~~~~C~~C~ktkf~-~g~G~~C~~C~~rvC~rCg 111 (137)
.+.+|.||....-. +-.-..| .|.|.||..|-
T Consensus 10 ~~~~CpICle~~~~~d~~~~p~-~CGH~fC~~Cl 42 (78)
T 1e4u_A 10 DPVECPLCMEPLEIDDINFFPC-TCGYQICRFCW 42 (78)
T ss_dssp CCCBCTTTCCBCCTTTTTCCSS-TTSCCCCHHHH
T ss_pred cCCcCCccCccCcccccccccc-CCCCCcCHHHH
Confidence 36789999975322 1111222 35555555553
No 40
>1vk6_A NADH pyrophosphatase; 1790429, structural genomics, JCSG, PS protein structure initiative, joint center for structural G hydrolase; HET: MSE; 2.20A {Escherichia coli} SCOP: d.113.1.4 d.113.1.4 g.41.14.1 PDB: 2gb5_A
Probab=55.84 E-value=4.8 Score=31.99 Aligned_cols=30 Identities=13% Similarity=0.365 Sum_probs=17.8
Q ss_pred cccccccccccccCCCCCCCccccccccccCCceee
Q psy5308 80 DATCHICLKTKFADGVGHMCNYCNIRCCARCGGKVT 115 (137)
Q Consensus 80 ~~~C~~C~ktkf~~g~G~~C~~C~~rvC~rCg~~v~ 115 (137)
.+-|+.|+........+ ..++|..||....
T Consensus 107 ~~fC~~CG~~~~~~~~~------~~~~C~~C~~~~y 136 (269)
T 1vk6_A 107 HKYCGYCGHEMYPSKTE------WAMLCSHCRERYY 136 (269)
T ss_dssp TSBCTTTCCBEEECSSS------SCEEESSSSCEEC
T ss_pred CCccccCCCcCccCCCc------eeeeCCCCCCEec
Confidence 57899999665332111 3456667775543
No 41
>2ecg_A Baculoviral IAP repeat-containing protein 4; BIRC4, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=55.32 E-value=11 Score=23.69 Aligned_cols=35 Identities=26% Similarity=0.715 Sum_probs=19.8
Q ss_pred ccccccccccc---ccCCCCCC--Cccccc--cccccCCcee
Q psy5308 80 DATCHICLKTK---FADGVGHM--CNYCNI--RCCARCGGKV 114 (137)
Q Consensus 80 ~~~C~~C~ktk---f~~g~G~~--C~~C~~--rvC~rCg~~v 114 (137)
...|.||.... ....+||. |..|-. ..|.-|+..+
T Consensus 25 ~~~C~IC~~~~~~~~~~pCgH~~~C~~C~~~~~~CP~Cr~~i 66 (75)
T 2ecg_A 25 EKLCKICMDRNIAIVFVPCGHLVTCKQCAEAVDKCPMCYTVI 66 (75)
T ss_dssp HHSCSSSCSSCCCBCCSSSCCCCBCHHHHHHCSBCTTTCCBC
T ss_pred CCCCCcCCCCCCCEEEecCCCHHHHHHHhhCCCCCccCCcee
Confidence 35699998552 11257774 566642 3455555443
No 42
>2ea5_A Cell growth regulator with ring finger domain protein 1; CGRRF1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=54.88 E-value=6.8 Score=24.66 Aligned_cols=36 Identities=22% Similarity=0.526 Sum_probs=23.4
Q ss_pred cccccccccccc---ccCCCCCC--Cccc--cccccccCCcee
Q psy5308 79 LDATCHICLKTK---FADGVGHM--CNYC--NIRCCARCGGKV 114 (137)
Q Consensus 79 ~~~~C~~C~ktk---f~~g~G~~--C~~C--~~rvC~rCg~~v 114 (137)
....|.+|.... ....+||. |..| ..+.|--|+..+
T Consensus 14 ~~~~C~IC~~~~~~~v~~pCgH~~~C~~C~~~~~~CP~CR~~i 56 (68)
T 2ea5_A 14 NSKDCVVCQNGTVNWVLLPCRHTCLCDGCVKYFQQCPMCRQFV 56 (68)
T ss_dssp CSSCCSSSSSSCCCCEETTTTBCCSCTTHHHHCSSCTTTCCCC
T ss_pred CCCCCCCcCcCCCCEEEECCCChhhhHHHHhcCCCCCCCCcch
Confidence 368899998552 22368885 7777 445666776554
No 43
>2ct7_A Ring finger protein 31; IBR, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.4
Probab=52.95 E-value=5.3 Score=26.44 Aligned_cols=32 Identities=22% Similarity=0.553 Sum_probs=23.2
Q ss_pred cccccccccccC--CCCCCCccccccccccCCce
Q psy5308 82 TCHICLKTKFAD--GVGHMCNYCNIRCCARCGGK 113 (137)
Q Consensus 82 ~C~~C~ktkf~~--g~G~~C~~C~~rvC~rCg~~ 113 (137)
-|..|......+ .....|..|.+.||..|+..
T Consensus 27 wCP~C~~~~~~~~~~~~v~C~~C~~~FC~~C~~~ 60 (86)
T 2ct7_A 27 WCAQCSFGFIYEREQLEATCPQCHQTFCVRCKRQ 60 (86)
T ss_dssp CCSSSCCCEECCCSCSCEECTTTCCEECSSSCSB
T ss_pred ECcCCCchheecCCCCceEeCCCCCccccccCCc
Confidence 388887543332 24467999999999999864
No 44
>4ic3_A E3 ubiquitin-protein ligase XIAP; ring domain, zinc-finger, E3 ligase; 1.78A {Homo sapiens} PDB: 4ic2_A
Probab=52.60 E-value=11 Score=23.69 Aligned_cols=35 Identities=26% Similarity=0.715 Sum_probs=20.9
Q ss_pred ccccccccccc---ccCCCCCC--Cccccc--cccccCCcee
Q psy5308 80 DATCHICLKTK---FADGVGHM--CNYCNI--RCCARCGGKV 114 (137)
Q Consensus 80 ~~~C~~C~ktk---f~~g~G~~--C~~C~~--rvC~rCg~~v 114 (137)
+..|.+|.... ....+||. |..|-. ..|.-|+..+
T Consensus 24 ~~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~~~CP~Cr~~i 65 (74)
T 4ic3_A 24 EKLCKICMDRNIAIVFVPCGHLVTCKQCAEAVDKCPMCYTVI 65 (74)
T ss_dssp HTBCTTTSSSBCCEEEETTCCBCCCHHHHTTCSBCTTTCCBC
T ss_pred CCCCCCCCCCCCCEEEcCCCChhHHHHhhhcCccCCCcCcCc
Confidence 46799999553 11257773 666654 3555565443
No 45
>2j9u_B VPS36, vacuolar protein sorting-associated protein 36; zinc-finger, metal-binding, protein transport; 2.00A {Saccharomyces cerevisiae} SCOP: g.41.11.1
Probab=50.34 E-value=2.4 Score=28.77 Aligned_cols=13 Identities=8% Similarity=-0.166 Sum_probs=10.6
Q ss_pred cceEEeeeccCCC
Q psy5308 121 VSVEVTTRGHNNN 133 (137)
Q Consensus 121 ~~W~Ctvc~~~~~ 133 (137)
..|+|.||.+.|.
T Consensus 16 ~tWVCpICsfsN~ 28 (76)
T 2j9u_B 16 STWVCPICMVSNE 28 (76)
T ss_dssp EEEECTTTCCEEE
T ss_pred cceECccccccCc
Confidence 5799999987664
No 46
>3eh2_A Protein transport protein SEC24C; copii-coat protein, vesicle transport, cytoplasm, endoplasmic reticulum, ER-golgi transport, golgi apparatus; 2.35A {Homo sapiens}
Probab=50.25 E-value=3.1 Score=38.01 Aligned_cols=32 Identities=16% Similarity=0.133 Sum_probs=20.2
Q ss_pred CCCccccccccccCCceeecCCCCcceEEeeeccCC
Q psy5308 97 HMCNYCNIRCCARCGGKVTLRSNKVSVEVTTRGHNN 132 (137)
Q Consensus 97 ~~C~~C~~rvC~rCg~~v~lr~n~~~W~Ctvc~~~~ 132 (137)
.-|..|+-.++.-|... . ++..|+|.+|.+.|
T Consensus 95 vRC~rCrayiNPf~~f~---~-~g~~w~Cn~C~~~N 126 (766)
T 3eh2_A 95 LRCNRCKAYMCPFMQFI---E-GGRRFQCCFCSCIN 126 (766)
T ss_dssp CBCTTTCCBCCTTCEEE---G-GGTEEECTTTCCEE
T ss_pred CccCCCCCEeCCceEEe---c-CCCEEEeccccccC
Confidence 45666666666666422 2 23489999998765
No 47
>2jrp_A Putative cytoplasmic protein; two-zinc binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium LT2}
Probab=50.03 E-value=5.1 Score=27.29 Aligned_cols=10 Identities=20% Similarity=0.441 Sum_probs=4.6
Q ss_pred cccccCCcee
Q psy5308 105 RCCARCGGKV 114 (137)
Q Consensus 105 rvC~rCg~~v 114 (137)
.||..|++-+
T Consensus 52 yFC~~C~~Li 61 (81)
T 2jrp_A 52 YFCQNGHGLI 61 (81)
T ss_dssp ECCTTTTCCC
T ss_pred eeeccCCCEe
Confidence 4444444443
No 48
>3h3m_A Flagellar protein FLIT; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG, flagellum; 2.50A {Bordetella bronchiseptica}
Probab=49.19 E-value=22 Score=25.58 Aligned_cols=40 Identities=10% Similarity=0.144 Sum_probs=28.2
Q ss_pred CCCHHH----HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Q psy5308 24 HLTLEE----RQIIESVMMRQKQEEERELEIMRRKQDEVHLLEQ 63 (137)
Q Consensus 24 ~LteeE----r~~Il~VL~R~~~le~~E~~RirkL~~el~~lk~ 63 (137)
.|++++ +.+|-.+|..|.+.+..=+.|+.+|..-+...++
T Consensus 68 ~l~~~~r~~k~~lL~~IL~nDaeIR~Ll~prl~eL~~li~~~~r 111 (126)
T 3h3m_A 68 PLDEAARGMKFDLLVRILENDAAVRDLALPQLARLSDLLGRMKR 111 (126)
T ss_dssp CCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-----
T ss_pred CCCHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhH
Confidence 455555 5788889999999999988888888877766543
No 49
>3efo_B SEC24 related gene family, member D; copii, coat protein, transport signal, disease mutation, endoplasmic reticulum, ER-golgi transport, golgi apparatus, membrane; 2.70A {Homo sapiens} PDB: 3eg9_B
Probab=49.11 E-value=2.8 Score=38.33 Aligned_cols=32 Identities=16% Similarity=0.072 Sum_probs=20.8
Q ss_pred CCCccccccccccCCceeecCCCCcceEEeeeccCC
Q psy5308 97 HMCNYCNIRCCARCGGKVTLRSNKVSVEVTTRGHNN 132 (137)
Q Consensus 97 ~~C~~C~~rvC~rCg~~v~lr~n~~~W~Ctvc~~~~ 132 (137)
.-|..|+-.++.-|... .+ +..|+|.+|.+.|
T Consensus 99 vRC~rCrayiNPf~~f~--~~--g~~w~Cn~C~~~N 130 (770)
T 3efo_B 99 VRCNRCKAYMCPFMQFI--EG--GRRYQCGFCNCVN 130 (770)
T ss_dssp CBCTTTCCBSCTTCEEE--GG--GTEEECTTTCCEE
T ss_pred CccCCCCCCcCCceEEe--cC--CCEEEeccccccC
Confidence 46666666666666422 12 3489999998765
No 50
>3eh1_A Protein transport protein SEC24B; copii coat protein, vesicle transport, transport signal sequence, cytoplasm, endoplasmic reticulum; 1.80A {Homo sapiens} PDB: 2nut_B 2nup_B 3egd_B 3egx_B
Probab=48.85 E-value=4.2 Score=37.11 Aligned_cols=31 Identities=10% Similarity=0.009 Sum_probs=22.3
Q ss_pred CCCccccccccccCCceeecCCCCcceEEeeeccCC
Q psy5308 97 HMCNYCNIRCCARCGGKVTLRSNKVSVEVTTRGHNN 132 (137)
Q Consensus 97 ~~C~~C~~rvC~rCg~~v~lr~n~~~W~Ctvc~~~~ 132 (137)
.-|..|+-.++.-|.. .. +..|+|.+|...|
T Consensus 86 ~RC~rCrayiNPf~~f---~~--~~~w~Cn~C~~~N 116 (751)
T 3eh1_A 86 VRCRSCRTYINPFVSF---ID--QRRWKCNLCYRVN 116 (751)
T ss_dssp CBCTTTCCBCCTTCEE---SS--SSEEECTTTCCEE
T ss_pred CcccCccCEeCCceEE---ec--CCEEEcccccCCC
Confidence 6777777777777753 23 2479999997655
No 51
>4ayb_P DNA-directed RNA polymerase; transferase, multi-subunit, transcription; 3.20A {Sulfolobus shibatae} PDB: 2pmz_P 2wb1_P 2y0s_P 3hkz_P 2waq_P 4b1o_P 4b1p_X
Probab=48.33 E-value=8.7 Score=23.88 Aligned_cols=25 Identities=32% Similarity=0.580 Sum_probs=17.5
Q ss_pred ccccccccccc----CCCCCCCccccccc
Q psy5308 82 TCHICLKTKFA----DGVGHMCNYCNIRC 106 (137)
Q Consensus 82 ~C~~C~ktkf~----~g~G~~C~~C~~rv 106 (137)
.|++|+++.-. --.|.-|.||-.||
T Consensus 5 ~C~rCg~~fs~~el~~lP~IrCpyCGyri 33 (48)
T 4ayb_P 5 RCGKCWKTFTDEQLKVLPGVRCPYCGYKI 33 (48)
T ss_dssp CCCCTTTTCCCCCSCCCSSSCCTTTCCSC
T ss_pred EeeccCCCccHHHHhhCCCcccCccCcEE
Confidence 49999987421 23678899987765
No 52
>2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural genomics, PSI-2, protein struc initiative; NMR {Homo sapiens}
Probab=48.23 E-value=2.7 Score=27.61 Aligned_cols=46 Identities=13% Similarity=0.174 Sum_probs=27.4
Q ss_pred ccccccccccccccCCCCCCCccccccccccCCceeecCCCCcceEEeeec
Q psy5308 79 LDATCHICLKTKFADGVGHMCNYCNIRCCARCGGKVTLRSNKVSVEVTTRG 129 (137)
Q Consensus 79 ~~~~C~~C~ktkf~~g~G~~C~~C~~rvC~rCg~~v~lr~n~~~W~Ctvc~ 129 (137)
.+..|.||... |..+....-..|.|.||..|-.... ..+ -.|.+|-
T Consensus 39 ~~~~C~IC~~~-~~~~~~~~~l~C~H~Fh~~Ci~~wl-~~~---~~CP~Cr 84 (91)
T 2l0b_A 39 QEMCCPICCSE-YVKGDVATELPCHHYFHKPCVSIWL-QKS---GTCPVCR 84 (91)
T ss_dssp SCSEETTTTEE-CCTTCEEEEETTTEEEEHHHHHHHH-TTT---CBCTTTC
T ss_pred CCCCCcccChh-hcCCCcEEecCCCChHHHHHHHHHH-HcC---CcCcCcC
Confidence 35789999855 3333333334588999999954432 221 2566653
No 53
>1e8j_A Rubredoxin; iron-sulfur-protein, zinc-substitution, thermostability; NMR {Desulfovibrio gigas} SCOP: g.41.5.1 PDB: 1rdg_A 2dsx_A 1spw_A
Probab=46.96 E-value=6.1 Score=24.47 Aligned_cols=12 Identities=17% Similarity=0.047 Sum_probs=8.4
Q ss_pred ceEEeeeccCCC
Q psy5308 122 SVEVTTRGHNNN 133 (137)
Q Consensus 122 ~W~Ctvc~~~~~ 133 (137)
.|+|++|++.+.
T Consensus 3 ~y~C~~CGyvYd 14 (52)
T 1e8j_A 3 IYVCTVCGYEYD 14 (52)
T ss_dssp CEECSSSCCCCC
T ss_pred cEEeCCCCeEEc
Confidence 477777777664
No 54
>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=46.89 E-value=3.9 Score=25.30 Aligned_cols=47 Identities=15% Similarity=0.143 Sum_probs=26.5
Q ss_pred cccccccccccccCCCCCCCccccccccccCCceeecCCCCcceEEeeeccC
Q psy5308 80 DATCHICLKTKFADGVGHMCNYCNIRCCARCGGKVTLRSNKVSVEVTTRGHN 131 (137)
Q Consensus 80 ~~~C~~C~ktkf~~g~G~~C~~C~~rvC~rCg~~v~lr~n~~~W~Ctvc~~~ 131 (137)
...|.||... |.++....-..|.|.||..|-...... . -.|.+|-..
T Consensus 15 ~~~C~IC~~~-~~~~~~~~~~~C~H~f~~~Ci~~~~~~--~--~~CP~Cr~~ 61 (74)
T 2ep4_A 15 HELCAVCLED-FKPRDELGICPCKHAFHRKCLIKWLEV--R--KVCPLCNMP 61 (74)
T ss_dssp SCBCSSSCCB-CCSSSCEEEETTTEEEEHHHHHHHHHH--C--SBCTTTCCB
T ss_pred CCCCcCCCcc-cCCCCcEEEcCCCCEecHHHHHHHHHc--C--CcCCCcCcc
Confidence 5789999966 333322211258888988885443211 1 256665443
No 55
>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT- interacting protein, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=45.93 E-value=4.6 Score=25.53 Aligned_cols=49 Identities=20% Similarity=0.386 Sum_probs=26.7
Q ss_pred cccccccccccccCC-CCCCCccccccccccCCceeecCCCCcceEEeeecc
Q psy5308 80 DATCHICLKTKFADG-VGHMCNYCNIRCCARCGGKVTLRSNKVSVEVTTRGH 130 (137)
Q Consensus 80 ~~~C~~C~ktkf~~g-~G~~C~~C~~rvC~rCg~~v~lr~n~~~W~Ctvc~~ 130 (137)
...|.||... |.++ ....=..|.|.||..|-..+.... .....|.+|-.
T Consensus 15 ~~~C~IC~~~-~~~~~~~~~~~~CgH~fC~~Ci~~~~~~~-~~~~~CP~Cr~ 64 (88)
T 2ct2_A 15 VLECPICMES-FTEEQLRPKLLHCGHTICRQCLEKLLASS-INGVRCPFCSK 64 (88)
T ss_dssp CCBCTTTCCB-CCTTSSCEEECSSSCEEEHHHHHHHHHHC-SSCBCCTTTCC
T ss_pred CCCCccCCcc-ccccCCCeEECCCCChhhHHHHHHHHHcC-CCCcCCCCCCC
Confidence 5789999855 3321 111222578888888854432111 11356766544
No 56
>1yuz_A Nigerythrin; rubrythrin, rubredoxin, hemerythrin, electron transfer, DIIR center, oxidoreductase; 1.40A {Desulfovibrio vulgaris subsp} SCOP: a.25.1.1 g.41.5.1 PDB: 1yv1_A 1yux_A
Probab=45.75 E-value=4.6 Score=31.04 Aligned_cols=27 Identities=11% Similarity=0.059 Sum_probs=18.0
Q ss_pred cccccccCCceeecCCCCcceEEeeeccCC
Q psy5308 103 NIRCCARCGGKVTLRSNKVSVEVTTRGHNN 132 (137)
Q Consensus 103 ~~rvC~rCg~~v~lr~n~~~W~Ctvc~~~~ 132 (137)
..-+|.-||--. .. ..-|+|.+|++..
T Consensus 170 ~~~~C~~CG~i~-~g--~~p~~CP~C~~~k 196 (202)
T 1yuz_A 170 KFHLCPICGYIH-KG--EDFEKCPICFRPK 196 (202)
T ss_dssp CEEECSSSCCEE-ES--SCCSBCTTTCCBG
T ss_pred cEEEECCCCCEE-cC--cCCCCCCCCCCCh
Confidence 357888888443 23 2349999998754
No 57
>2ke4_A CDC42-interacting protein 4; CIP4, TC10, coiled-coil, alternative splicing, cell membrane, coiled coil, cytoplasm, cytoskeleton, endocytosis; NMR {Homo sapiens}
Probab=45.21 E-value=38 Score=23.39 Aligned_cols=18 Identities=28% Similarity=0.359 Sum_probs=14.1
Q ss_pred CCCCCCCCCHHHHHHHHH
Q psy5308 18 IIPDLSHLTLEERQIIES 35 (137)
Q Consensus 18 ~~~dLS~LteeEr~~Il~ 35 (137)
..-|+|||.++-|...|.
T Consensus 4 ~~~d~s~LPpeqRkkkL~ 21 (98)
T 2ke4_A 4 MTEDFSHLPPEQQRKRLQ 21 (98)
T ss_dssp CCSCSSSSCHHHHHHHHH
T ss_pred cchhhccCCHHHHHHHHH
Confidence 456999999999876554
No 58
>1dx8_A Rubredoxin; electron transport, zinc-substitution; NMR {Guillardia theta} SCOP: g.41.5.1 PDB: 1h7v_A
Probab=44.68 E-value=5.9 Score=26.01 Aligned_cols=10 Identities=10% Similarity=-0.107 Sum_probs=7.5
Q ss_pred ceEEeeeccC
Q psy5308 122 SVEVTTRGHN 131 (137)
Q Consensus 122 ~W~Ctvc~~~ 131 (137)
-|+|.+|+..
T Consensus 40 dw~CP~Cga~ 49 (70)
T 1dx8_A 40 SFMCPACRSP 49 (70)
T ss_dssp TCBCTTTCCB
T ss_pred CCcCCCCCCC
Confidence 5888888764
No 59
>2ecv_A Tripartite motif-containing protein 5; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=44.41 E-value=9.8 Score=23.55 Aligned_cols=29 Identities=28% Similarity=0.655 Sum_probs=18.4
Q ss_pred cccccccccccccCCCCCCCccccccccccCCc
Q psy5308 80 DATCHICLKTKFADGVGHMCNYCNIRCCARCGG 112 (137)
Q Consensus 80 ~~~C~~C~ktkf~~g~G~~C~~C~~rvC~rCg~ 112 (137)
...|.||... |.+.. . ..|.|.||..|-.
T Consensus 19 ~~~C~IC~~~-~~~p~--~-~~CgH~fC~~Ci~ 47 (85)
T 2ecv_A 19 EVTCPICLEL-LTQPL--S-LDCGHSFCQACLT 47 (85)
T ss_dssp CCCCTTTCSC-CSSCB--C-CSSSCCBCTTHHH
T ss_pred CCCCCCCCcc-cCCce--e-CCCCCHHHHHHHH
Confidence 5789999965 33221 1 1477778877753
No 60
>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens}
Probab=44.25 E-value=3.7 Score=27.42 Aligned_cols=29 Identities=31% Similarity=0.867 Sum_probs=17.0
Q ss_pred cccccccccccccCCCCCCCccccccccccCC
Q psy5308 80 DATCHICLKTKFADGVGHMCNYCNIRCCARCG 111 (137)
Q Consensus 80 ~~~C~~C~ktkf~~g~G~~C~~C~~rvC~rCg 111 (137)
.-.|.||.... .+ ...|..|.|.||..|-
T Consensus 22 ~~~C~IC~~~~-~~--p~~~~~CgH~FC~~Ci 50 (100)
T 3lrq_A 22 VFRCFICMEKL-RD--ARLCPHCSKLCCFSCI 50 (100)
T ss_dssp HTBCTTTCSBC-SS--EEECTTTCCEEEHHHH
T ss_pred CCCCccCCccc-cC--ccccCCCCChhhHHHH
Confidence 57899999653 22 2234455555665553
No 61
>1g2h_A Transcriptional regulatory protein TYRR homolog; protein structure, , DNA-binding domain, helix- turn-helix motif; NMR {Haemophilus influenzae} SCOP: a.4.1.12
Probab=42.95 E-value=41 Score=20.44 Aligned_cols=17 Identities=12% Similarity=0.147 Sum_probs=14.7
Q ss_pred CCCHHHHHHHHHHHHhh
Q psy5308 24 HLTLEERQIIESVMMRQ 40 (137)
Q Consensus 24 ~LteeEr~~Il~VL~R~ 40 (137)
.|.+-|++.|..+|.+.
T Consensus 17 ~l~~~Er~~I~~aL~~~ 33 (61)
T 1g2h_A 17 IIGFYEAQVLKLFYAEY 33 (61)
T ss_dssp SCSHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHh
Confidence 47888999999999876
No 62
>3cc2_Z 50S ribosomal protein L37AE, 50S ribosomal protein L32E; genomic sequnece for R-proteins, ribonucleoprotein, ribosoma protein, RNA-binding; HET: 1MA OMU OMG UR3 PSU; 2.40A {Haloarcula marismortui} SCOP: g.41.8.1 PDB: 3cc4_Z* 3cc7_Z* 3cce_Z* 3ccj_Z* 3ccl_Z* 3ccm_Z* 3ccq_Z* 3ccr_Z* 3ccs_Z* 3ccu_Z* 3ccv_Z* 3cd6_Z* 3cma_Z* 3cme_Z* 3i55_Z* 3i56_Z* 3cpw_Y* 4adx_Z
Probab=42.54 E-value=6.5 Score=28.53 Aligned_cols=11 Identities=27% Similarity=0.700 Sum_probs=8.3
Q ss_pred ccccccccccc
Q psy5308 80 DATCHICLKTK 90 (137)
Q Consensus 80 ~~~C~~C~ktk 90 (137)
..+|..|+++.
T Consensus 60 kytCPfCGk~~ 70 (116)
T 3cc2_Z 60 DHACPNCGEDR 70 (116)
T ss_dssp CEECSSSCCEE
T ss_pred CCcCCCCCCce
Confidence 46799998764
No 63
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=42.15 E-value=20 Score=26.92 Aligned_cols=27 Identities=7% Similarity=-0.064 Sum_probs=15.0
Q ss_pred cccccccccccccCCCCCCCccccccccccC
Q psy5308 80 DATCHICLKTKFADGVGHMCNYCNIRCCARC 110 (137)
Q Consensus 80 ~~~C~~C~ktkf~~g~G~~C~~C~~rvC~rC 110 (137)
.-+|.||+.. |-+..- ..|-|.||..|
T Consensus 208 ~~~c~i~~~~-~~dPv~---~~~gh~f~~~~ 234 (281)
T 2c2l_A 208 YLCGKISFEL-MREPCI---TPSGITYDRKD 234 (281)
T ss_dssp TTBCTTTCSB-CSSEEE---CSSCCEEETTH
T ss_pred ccCCcCcCCH-hcCCeE---CCCCCEECHHH
Confidence 5789999854 443211 12445555555
No 64
>3l9k_W Dynein intermediate chain, cytosolic; LC7, light chain 7, KM23, RO hydrolase, alternative splicing, lysosome, membrane; 3.00A {Drosophila melanogaster}
Probab=42.09 E-value=13 Score=21.94 Aligned_cols=11 Identities=36% Similarity=0.459 Sum_probs=9.6
Q ss_pred CCHHHHHHHHH
Q psy5308 25 LTLEERQIIES 35 (137)
Q Consensus 25 LteeEr~~Il~ 35 (137)
||+||++.|+.
T Consensus 1 LseEEk~~I~~ 11 (38)
T 3l9k_W 1 LSEEQKQMIIL 11 (38)
T ss_dssp CCHHHHHHHHT
T ss_pred CCHHHHHHHhc
Confidence 79999999875
No 65
>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, CHR protein, DNA repair, metal-binding, nucleus; 2.12A {Homo sapiens}
Probab=41.97 E-value=3.4 Score=27.94 Aligned_cols=44 Identities=23% Similarity=0.418 Sum_probs=23.8
Q ss_pred cccccccccccccCCCCCCCccccccccccCCceeecCCCCcceEEeeecc
Q psy5308 80 DATCHICLKTKFADGVGHMCNYCNIRCCARCGGKVTLRSNKVSVEVTTRGH 130 (137)
Q Consensus 80 ~~~C~~C~ktkf~~g~G~~C~~C~~rvC~rCg~~v~lr~n~~~W~Ctvc~~ 130 (137)
+-.|.||.... .+.. --.|.|.||..|-.... . .....|.+|-.
T Consensus 15 ~~~C~iC~~~~-~~p~---~~~CgH~fC~~Ci~~~~-~--~~~~~CP~Cr~ 58 (115)
T 3l11_A 15 ECQCGICMEIL-VEPV---TLPCNHTLCKPCFQSTV-E--KASLCCPFCRR 58 (115)
T ss_dssp HHBCTTTCSBC-SSCE---ECTTSCEECHHHHCCCC-C--TTTSBCTTTCC
T ss_pred CCCCccCCccc-Ccee---EcCCCCHHhHHHHHHHH-h--HCcCCCCCCCc
Confidence 57799999553 3211 11567777777743321 1 11345666543
No 66
>3h0g_L DNA-directed RNA polymerases I, II, and III subunit rpabc4; transcription, multi-protein complex, DNA- binding, magnesium; 3.65A {Schizosaccharomyces pombe}
Probab=41.31 E-value=13 Score=24.02 Aligned_cols=27 Identities=19% Similarity=0.257 Sum_probs=17.1
Q ss_pred ccccccccccc-ccCCCCCCCccccccc
Q psy5308 80 DATCHICLKTK-FADGVGHMCNYCNIRC 106 (137)
Q Consensus 80 ~~~C~~C~ktk-f~~g~G~~C~~C~~rv 106 (137)
.-.|+.|+... +-.+.+.-|.+|-+||
T Consensus 21 ~Y~C~~Cg~~~~l~~~~~iRC~~CG~RI 48 (63)
T 3h0g_L 21 IYLCADCGARNTIQAKEVIRCRECGHRV 48 (63)
T ss_dssp CCBCSSSCCBCCCCSSSCCCCSSSCCCC
T ss_pred EEECCCCCCeeecCCCCceECCCCCcEE
Confidence 46799998664 3334556677666554
No 67
>3qt1_I DNA-directed RNA polymerases I, II, and III subun; transferase-transcription complex, RNA polymerase II, transc elongation; 4.30A {Saccharomyces cerevisiae}
Probab=41.29 E-value=7.5 Score=28.34 Aligned_cols=7 Identities=29% Similarity=0.667 Sum_probs=4.3
Q ss_pred ccccccc
Q psy5308 81 ATCHICL 87 (137)
Q Consensus 81 ~~C~~C~ 87 (137)
.-|.-|.
T Consensus 25 ~FCPeCg 31 (133)
T 3qt1_I 25 RFCRDCN 31 (133)
T ss_dssp CBCTTTC
T ss_pred eeCCCCC
Confidence 5566665
No 68
>1j1d_B Troponin T, TNT; THIN filament, muscle regulation, Ca2+ binding protein, EF- hand, coiled-coil, contractIle protein; 2.61A {Homo sapiens} SCOP: h.1.25.1 PDB: 1j1e_B
Probab=40.67 E-value=53 Score=23.09 Aligned_cols=48 Identities=15% Similarity=0.223 Sum_probs=26.8
Q ss_pred CCCCCCCHHHHHHHHHHH-HhhHHHHHHH---HHHHHHHHHHHHHHHHHHHH
Q psy5308 20 PDLSHLTLEERQIIESVM-MRQKQEEERE---LEIMRRKQDEVHLLEQSIRQ 67 (137)
Q Consensus 20 ~dLS~LteeEr~~Il~VL-~R~~~le~~E---~~RirkL~~el~~lk~~~~~ 67 (137)
+|+++|++++-..+..=| ++=-.|++.- +.++.+-.-++.+|+.+|..
T Consensus 37 L~id~l~~~~L~e~~keLh~~I~~LEeEKYDlE~kv~kq~yEI~eL~~rV~d 88 (106)
T 1j1d_B 37 LAIDHLNEDQLREKAKELWQTIYNLEAEKFDLQEKFKQQKYEINVLRNRIND 88 (106)
T ss_dssp HHHTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHhhhHHHHHHHHHHHH
Confidence 578888877765555444 3322232221 14455666777788766633
No 69
>1cch_A Cytochrome C551; electron transport; HET: HEM; NMR {Pseudomonas stutzeri} SCOP: a.3.1.1 PDB: 1fi3_A* 2i8f_A* 1cor_A*
Probab=40.67 E-value=32 Score=20.74 Aligned_cols=19 Identities=26% Similarity=0.417 Sum_probs=15.6
Q ss_pred CCCCCCCCHHHHHHHHHHHH
Q psy5308 19 IPDLSHLTLEERQIIESVMM 38 (137)
Q Consensus 19 ~~dLS~LteeEr~~Il~VL~ 38 (137)
||.+ .||++|.+.|...|.
T Consensus 61 Mp~~-~ls~~ei~~l~~yl~ 79 (82)
T 1cch_A 61 MPPN-PVTEEEAKILAEWVL 79 (82)
T ss_dssp CCCC-SCCHHHHHHHHHHHH
T ss_pred CCCC-CCCHHHHHHHHHHHH
Confidence 5555 899999999998874
No 70
>6rxn_A Rubredoxin; electron transfer(iron-sulfur protein); 1.50A {Desulfovibrio desulfuricans} SCOP: g.41.5.1
Probab=39.80 E-value=5.4 Score=24.30 Aligned_cols=12 Identities=8% Similarity=0.044 Sum_probs=9.5
Q ss_pred ceEEeeeccCCC
Q psy5308 122 SVEVTTRGHNNN 133 (137)
Q Consensus 122 ~W~Ctvc~~~~~ 133 (137)
.|+|+||++.+.
T Consensus 4 ~y~C~vCGyvyd 15 (46)
T 6rxn_A 4 KYVCNVCGYEYD 15 (46)
T ss_dssp CEEETTTCCEEC
T ss_pred EEECCCCCeEEe
Confidence 599999988763
No 71
>2ecj_A Tripartite motif-containing protein 39; TRIM39, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=39.47 E-value=11 Score=21.84 Aligned_cols=30 Identities=27% Similarity=0.747 Sum_probs=21.0
Q ss_pred cccccccccccccCCCCCCCccccccccccCCce
Q psy5308 80 DATCHICLKTKFADGVGHMCNYCNIRCCARCGGK 113 (137)
Q Consensus 80 ~~~C~~C~ktkf~~g~G~~C~~C~~rvC~rCg~~ 113 (137)
...|.||... |.+.. . ..|.|.||..|-..
T Consensus 15 ~~~C~IC~~~-~~~p~--~-~~CgH~fC~~Ci~~ 44 (58)
T 2ecj_A 15 EASCSVCLEY-LKEPV--I-IECGHNFCKACITR 44 (58)
T ss_dssp CCBCSSSCCB-CSSCC--C-CSSCCCCCHHHHHH
T ss_pred CCCCccCCcc-cCccE--e-CCCCCccCHHHHHH
Confidence 5789999855 33322 2 36899999999544
No 72
>1l4a_A Synaptobrevin; snare, snare complex, membrane fusion, neurotransmission, endocytosis/exocytosis complex; 2.95A {Loligo pealei} SCOP: h.1.15.1
Probab=39.30 E-value=8 Score=25.56 Aligned_cols=20 Identities=20% Similarity=0.224 Sum_probs=13.5
Q ss_pred HHHHHHHHHHhhHHHHHHHH
Q psy5308 29 ERQIIESVMMRQKQEEEREL 48 (137)
Q Consensus 29 Er~~Il~VL~R~~~le~~E~ 48 (137)
=++-|-.||+|.+.|+..++
T Consensus 31 M~~NI~~vLeRGekLd~L~~ 50 (80)
T 1l4a_A 31 MRVNVDKVLERDSKISELDD 50 (80)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhHHHHHHH
Confidence 34556778888777776654
No 73
>3ph2_B Cytochrome C6; photosynthesis, cytochrome F, photosys thylakoid; HET: HEM; 1.40A {Phormidium laminosum} SCOP: a.3.1.1 PDB: 2v08_A* 1c6s_A*
Probab=39.25 E-value=34 Score=20.72 Aligned_cols=23 Identities=17% Similarity=0.375 Sum_probs=17.5
Q ss_pred CCCC-CCCCHHHHHHHHHHHHhhH
Q psy5308 19 IPDL-SHLTLEERQIIESVMMRQK 41 (137)
Q Consensus 19 ~~dL-S~LteeEr~~Il~VL~R~~ 41 (137)
||.+ ..||++|.+.|...|....
T Consensus 59 Mp~~~~~ls~~ei~~l~~yl~~~~ 82 (86)
T 3ph2_B 59 MPAFKGRLTDDQIAAVAAYVLDQA 82 (86)
T ss_dssp BCCCTTTSCHHHHHHHHHHHHHHH
T ss_pred CCCcccCCCHHHHHHHHHHHHHhh
Confidence 4444 5799999999999886543
No 74
>2d0s_A Cytochrome C, cytochrome C552; heme protein, electron transport; HET: HEC; 2.20A {Hydrogenophilus thermoluteolus}
Probab=38.85 E-value=27 Score=21.22 Aligned_cols=20 Identities=10% Similarity=0.207 Sum_probs=16.1
Q ss_pred CCCCCCCCHHHHHHHHHHHH
Q psy5308 19 IPDLSHLTLEERQIIESVMM 38 (137)
Q Consensus 19 ~~dLS~LteeEr~~Il~VL~ 38 (137)
||.+..||++|.+.|...|.
T Consensus 57 Mp~~~~Ls~~ei~~l~~yl~ 76 (79)
T 2d0s_A 57 MPPHPQVAEADIEKIVRWVL 76 (79)
T ss_dssp BCCCTTSCHHHHHHHHHHHT
T ss_pred CCCCCCCCHHHHHHHHHHHH
Confidence 44456899999999998874
No 75
>2ysj_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=38.70 E-value=6.8 Score=23.45 Aligned_cols=31 Identities=26% Similarity=0.673 Sum_probs=21.0
Q ss_pred cccccccccccccCCCCCCCccccccccccCCcee
Q psy5308 80 DATCHICLKTKFADGVGHMCNYCNIRCCARCGGKV 114 (137)
Q Consensus 80 ~~~C~~C~ktkf~~g~G~~C~~C~~rvC~rCg~~v 114 (137)
+..|.||... |.+.. . -.|.|.||..|-...
T Consensus 20 ~~~C~IC~~~-~~~p~--~-~~CgH~fC~~Ci~~~ 50 (63)
T 2ysj_A 20 EVICPICLDI-LQKPV--T-IDCGHNFCLKCITQI 50 (63)
T ss_dssp CCBCTTTCSB-CSSCE--E-CTTSSEECHHHHHHH
T ss_pred CCCCCcCCch-hCCeE--E-eCCCCcchHHHHHHH
Confidence 5789999854 43321 1 168899999996443
No 76
>1urq_A M-tomosyn isoform; transport protein, tomosyn-snare complex, exocytosis, four helical bundle, coiled coil; 2.0A {Rattus norvegicus} SCOP: h.1.15.1
Probab=38.67 E-value=74 Score=20.14 Aligned_cols=21 Identities=14% Similarity=-0.013 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHhhHHHHHHHH
Q psy5308 28 EERQIIESVMMRQKQEEEREL 48 (137)
Q Consensus 28 eEr~~Il~VL~R~~~le~~E~ 48 (137)
.=++.|..||+|.+.|+.+++
T Consensus 19 iM~~ni~kvlERGekL~~L~d 39 (63)
T 1urq_A 19 ELARARLALDERGQKLSDLEE 39 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 346678888999888887764
No 77
>1x0t_A Ribonuclease P protein component 4; pyrococcus horikoshii OT3, hydrolase; 1.60A {Pyrococcus horikoshii} PDB: 2zae_B
Probab=38.25 E-value=11 Score=26.83 Aligned_cols=38 Identities=21% Similarity=0.298 Sum_probs=21.7
Q ss_pred cccccccccccccCCCCCCCccccccccccCCceeecCCC---CcceEEeeeccCCC
Q psy5308 80 DATCHICLKTKFADGVGHMCNYCNIRCCARCGGKVTLRSN---KVSVEVTTRGHNNN 133 (137)
Q Consensus 80 ~~~C~~C~ktkf~~g~G~~C~~C~~rvC~rCg~~v~lr~n---~~~W~Ctvc~~~~~ 133 (137)
...|..|+ +.|+.|. .| .+++ .++ .+++.|..|++..+
T Consensus 65 R~~Ck~C~-s~LiPG~--t~-----------~vri--~~~~~~~vv~tCl~Cg~~kR 105 (120)
T 1x0t_A 65 RRYCKRCH-TFLIPGV--NA-----------RVRL--RTKRMPHVVITCLECGYIMR 105 (120)
T ss_dssp TSBCTTTC-CBCCBTT--TE-----------EEEE--ECSSSCEEEEEETTTCCEEE
T ss_pred HHhccCCC-CEeECCC--ce-----------EEEE--ecCCccEEEEECCCCCCEEE
Confidence 46799997 5555442 22 2222 222 36778888887543
No 78
>1mm2_A MI2-beta; PHD, zinc finger, protein scaffold, DNA binding protein; NMR {Homo sapiens} SCOP: g.50.1.2 PDB: 2l75_A* 1mm3_A
Probab=38.20 E-value=17 Score=22.50 Aligned_cols=48 Identities=15% Similarity=0.201 Sum_probs=32.2
Q ss_pred ccccccccccccccCCCCCCCccccccccccCCce-eecCCCCcceEEeeeccC
Q psy5308 79 LDATCHICLKTKFADGVGHMCNYCNIRCCARCGGK-VTLRSNKVSVEVTTRGHN 131 (137)
Q Consensus 79 ~~~~C~~C~ktkf~~g~G~~C~~C~~rvC~rCg~~-v~lr~n~~~W~Ctvc~~~ 131 (137)
.+..|.+|+.. +.-..|..|..-+=..|=.. +...+.+ .|.|..|...
T Consensus 8 ~~~~C~vC~~~----g~ll~Cd~C~~~fH~~Cl~ppl~~~p~g-~W~C~~C~~~ 56 (61)
T 1mm2_A 8 HMEFCRVCKDG----GELLCCDTCPSSYHIHCLNPPLPEIPNG-EWLCPRCTCP 56 (61)
T ss_dssp SCSSCTTTCCC----SSCBCCSSSCCCBCSSSSSSCCSSCCSS-CCCCTTTTTT
T ss_pred CCCcCCCCCCC----CCEEEcCCCCHHHcccccCCCcCcCCCC-ccCChhhcCc
Confidence 36789999864 34557888888777777542 2223333 7999998653
No 79
>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding; HET: SUC; 1.50A {Homo sapiens}
Probab=37.65 E-value=5.4 Score=23.56 Aligned_cols=33 Identities=21% Similarity=0.492 Sum_probs=19.9
Q ss_pred ccccccccccccc---CCCCCCCccccccccccCCc
Q psy5308 80 DATCHICLKTKFA---DGVGHMCNYCNIRCCARCGG 112 (137)
Q Consensus 80 ~~~C~~C~ktkf~---~g~G~~C~~C~~rvC~rCg~ 112 (137)
+..|.||...... .+....-..|.|.||..|-.
T Consensus 3 ~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~ 38 (64)
T 2xeu_A 3 MVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLR 38 (64)
T ss_dssp CCBCTTTCCBHHHHHHTTCCEEEETTSCEEEHHHHH
T ss_pred CCCCCccChhhhCccccCCCEEeCCCCCchhHHHHH
Confidence 4679999966321 11222445677778877743
No 80
>2ltp_A Nuclear receptor corepressor 2; SMRT, TRAC, SGC, structural genomics consortium, NESG, north structural genomics consortium; NMR {Homo sapiens}
Probab=43.86 E-value=6.9 Score=26.24 Aligned_cols=35 Identities=11% Similarity=0.002 Sum_probs=24.8
Q ss_pred ccccCCCCCCCCCCCCCCCCHHHHHHHHHHHHhhH
Q psy5308 7 MVTSMAQTNADIIPDLSHLTLEERQIIESVMMRQK 41 (137)
Q Consensus 7 ~~~~~~~~~~~~~~dLS~LteeEr~~Il~VL~R~~ 41 (137)
|++|+.+++.+..++-+..|++|-++|+..+....
T Consensus 1 ~~~~~~~~~~~p~~~~~~WT~eEd~~l~~~~~~~G 35 (89)
T 2ltp_A 1 MHHHHHHSSGRENLYFQGWTEEEMGTAKKGLLEHG 35 (89)
Confidence 34445555556677788999999999988765443
No 81
>3lay_A Zinc resistance-associated protein; salmonella typhimurium L structural genomics, center for structural genomics of INFE diseases; 2.70A {Salmonella enterica subsp}
Probab=37.57 E-value=81 Score=23.79 Aligned_cols=17 Identities=24% Similarity=0.255 Sum_probs=12.4
Q ss_pred CCCCHHHHHHHHHHHHh
Q psy5308 23 SHLTLEERQIIESVMMR 39 (137)
Q Consensus 23 S~LteeEr~~Il~VL~R 39 (137)
..||+|.++.|..+.+.
T Consensus 66 LnLT~EQq~ql~~I~~e 82 (175)
T 3lay_A 66 SPLTTEQQATAQKIYDD 82 (175)
T ss_dssp --CCHHHHHHHHHHHHH
T ss_pred ccCCHHHHHHHHHHHHH
Confidence 45999999998887653
No 82
>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid herpesvirus 1} SCOP: g.44.1.1
Probab=36.91 E-value=10 Score=22.87 Aligned_cols=30 Identities=27% Similarity=0.475 Sum_probs=18.2
Q ss_pred cccccccccccccCCCCCCCccccccccccCCc
Q psy5308 80 DATCHICLKTKFADGVGHMCNYCNIRCCARCGG 112 (137)
Q Consensus 80 ~~~C~~C~ktkf~~g~G~~C~~C~~rvC~rCg~ 112 (137)
+..|.||... +.+. ..-..|.|.||..|-.
T Consensus 5 ~~~C~IC~~~-~~~~--~~~~~C~H~fc~~Ci~ 34 (68)
T 1chc_A 5 AERCPICLED-PSNY--SMALPCLHAFCYVCIT 34 (68)
T ss_dssp CCCCSSCCSC-CCSC--EEETTTTEEESTTHHH
T ss_pred CCCCeeCCcc-ccCC--cEecCCCCeeHHHHHH
Confidence 5789999865 3321 1333467777777743
No 83
>1ytz_T Troponin T; muscle, THIN filament, actin binding, calcium, contractIle protein; HET: DR6; 3.00A {Gallus gallus} SCOP: h.1.25.1 PDB: 1yv0_T 2w49_1 2w4u_1
Probab=36.87 E-value=92 Score=21.84 Aligned_cols=48 Identities=21% Similarity=0.217 Sum_probs=29.7
Q ss_pred CCCCCCCHHHHHHHHHHH-HhhHHHHHHH---HHHHHHHHHHHHHHHHHHHH
Q psy5308 20 PDLSHLTLEERQIIESVM-MRQKQEEERE---LEIMRRKQDEVHLLEQSIRQ 67 (137)
Q Consensus 20 ~dLS~LteeEr~~Il~VL-~R~~~le~~E---~~RirkL~~el~~lk~~~~~ 67 (137)
+|+++|++++-.-+..=| +|=-.+++.- +.++.+-..++.+|+.+|..
T Consensus 37 L~id~l~~~~L~e~~keLh~~I~~lEeEKYDlE~kv~kq~yEI~eL~~rV~d 88 (107)
T 1ytz_T 37 LNIDHLNEDKLRDKAKELWDWLYQLQTEKYDFAEQIKRKKYEIVTLRNRIDQ 88 (107)
T ss_dssp CCCSSSCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhhhHHHHHHHHHHH
Confidence 589999888766555544 3323333321 24566667788888876643
No 84
>2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite motif protein 34, interferon- responsive finger protein 1; NMR {Homo sapiens}
Probab=36.55 E-value=9.7 Score=23.52 Aligned_cols=48 Identities=19% Similarity=0.353 Sum_probs=27.4
Q ss_pred cccccccccccccCCCCCCCccccccccccCCceeecCC---CCcceEEeeeccC
Q psy5308 80 DATCHICLKTKFADGVGHMCNYCNIRCCARCGGKVTLRS---NKVSVEVTTRGHN 131 (137)
Q Consensus 80 ~~~C~~C~ktkf~~g~G~~C~~C~~rvC~rCg~~v~lr~---n~~~W~Ctvc~~~ 131 (137)
...|.||... |.+.. . -.|.|.||..|-....... ....-.|.+|-..
T Consensus 12 ~~~C~IC~~~-~~~p~--~-l~CgH~fC~~Ci~~~~~~~~~~~~~~~~CP~Cr~~ 62 (79)
T 2egp_A 12 EVTCPICLEL-LTEPL--S-LDCGHSLCRACITVSNKEAVTSMGGKSSCPVCGIS 62 (79)
T ss_dssp CCEETTTTEE-CSSCC--C-CSSSCCCCHHHHSCCCCCCSSSCCCCCCCSSSCCC
T ss_pred CCCCcCCCcc-cCCee--E-CCCCCHHHHHHHHHHHHhcccCCCCCCcCCCCCCc
Confidence 5789999855 44322 2 2588888888855432110 0114567776543
No 85
>1weo_A Cellulose synthase, catalytic subunit (IRX3); structure genomics, ring-finger, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: g.44.1.1
Probab=36.50 E-value=13 Score=26.06 Aligned_cols=31 Identities=29% Similarity=0.718 Sum_probs=20.8
Q ss_pred ccccccccccc--ccCC-CCCCCccccccccccC
Q psy5308 80 DATCHICLKTK--FADG-VGHMCNYCNIRCCARC 110 (137)
Q Consensus 80 ~~~C~~C~ktk--f~~g-~G~~C~~C~~rvC~rC 110 (137)
..+|.||+..- -++| .=..|..|..-||..|
T Consensus 16 ~qiCqiCGD~VG~~~~Ge~FVAC~eC~FPvCrpC 49 (93)
T 1weo_A 16 GQFCEICGDQIGLTVEGDLFVACNECGFPACRPC 49 (93)
T ss_dssp SCBCSSSCCBCCBCSSSSBCCSCSSSCCCCCHHH
T ss_pred CCccccccCccccCCCCCEEEeeeccCChhhHHH
Confidence 57899999773 2233 4457888886666555
No 86
>2v3b_B Rubredoxin 2, rubredoxin; alkane degradation, iron-sulfur protein, oxidoreductase, ELE transfer, electron transport, FAD, NAD, iron; HET: FAD; 2.45A {Pseudomonas aeruginosa}
Probab=36.41 E-value=11 Score=23.59 Aligned_cols=10 Identities=10% Similarity=-0.034 Sum_probs=7.9
Q ss_pred ceEEeeeccC
Q psy5308 122 SVEVTTRGHN 131 (137)
Q Consensus 122 ~W~Ctvc~~~ 131 (137)
-|+|.+|+..
T Consensus 36 dw~CP~Cga~ 45 (55)
T 2v3b_B 36 DWVCPDCGVG 45 (55)
T ss_dssp TCCCTTTCCC
T ss_pred CCcCCCCCCC
Confidence 5999998764
No 87
>2kvu_A MKL/myocardin-like protein 1; SAP motif, DNA/RNA binding, structural genomics, northeast structural genomics consortium (NESG), PSI-2; NMR {Homo sapiens} PDB: 2kw9_A
Probab=36.39 E-value=24 Score=23.61 Aligned_cols=30 Identities=13% Similarity=0.163 Sum_probs=21.8
Q ss_pred cccccCCCCCCCCCCCCCCCCHHHHHHHHH
Q psy5308 6 GMVTSMAQTNADIIPDLSHLTLEERQIIES 35 (137)
Q Consensus 6 ~~~~~~~~~~~~~~~dLS~LteeEr~~Il~ 35 (137)
-|+|.++-++.+-..|++.||-.|.+.+|.
T Consensus 10 ~~~~~~~~~~g~l~~~l~klkVaeLK~eLk 39 (75)
T 2kvu_A 10 HMSTPLTGKPGALPANLDDMKVAELKQELK 39 (75)
T ss_dssp SCCSCSCSSCSSCCTTTTTSCHHHHHHHHH
T ss_pred ccccCCCCCCccchHHHHHCcHHHHHHHHH
Confidence 466665544445556999999999888776
No 88
>2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=36.39 E-value=7.3 Score=23.73 Aligned_cols=41 Identities=22% Similarity=0.439 Sum_probs=25.1
Q ss_pred cccccccccccccCCCCCCCccccccccccCCceeecCCCCcceEEeeec
Q psy5308 80 DATCHICLKTKFADGVGHMCNYCNIRCCARCGGKVTLRSNKVSVEVTTRG 129 (137)
Q Consensus 80 ~~~C~~C~ktkf~~g~G~~C~~C~~rvC~rCg~~v~lr~n~~~W~Ctvc~ 129 (137)
...|.||... |.+ +-..|.|.||..|-.... . ....|.+|-
T Consensus 15 ~~~C~IC~~~-~~~----~~~~CgH~fc~~Ci~~~~-~---~~~~CP~Cr 55 (70)
T 2ecn_A 15 EEECCICMDG-RAD----LILPCAHSFCQKCIDKWS-D---RHRNCPICR 55 (70)
T ss_dssp CCCCSSSCCS-CCS----EEETTTEEECHHHHHHSS-C---CCSSCHHHH
T ss_pred CCCCeeCCcC-ccC----cccCCCCcccHHHHHHHH-H---CcCcCCCcC
Confidence 5789999855 333 345678888888854431 1 134566654
No 89
>3dxr_A Mitochondrial import inner membrane translocase subunit TIM9; alpha-propeller, helix-turn-helix, intramolecular disulfides., chaperone; 2.50A {Saccharomyces cerevisiae}
Probab=36.33 E-value=19 Score=24.31 Aligned_cols=18 Identities=22% Similarity=0.326 Sum_probs=4.9
Q ss_pred CCCCCCHHHHHHHHHHHH
Q psy5308 21 DLSHLTLEERQIIESVMM 38 (137)
Q Consensus 21 dLS~LteeEr~~Il~VL~ 38 (137)
||+.|++.++..|..+|+
T Consensus 2 ~m~~l~~~~~~el~~~~~ 19 (89)
T 3dxr_A 2 SMDALNSKEQQEFQKVVE 19 (89)
T ss_dssp ------------CCHHHH
T ss_pred chhcCCHHHHHHHHHHHH
Confidence 688999999999999884
No 90
>2k3r_A Ribonuclease P protein component 4; PFU RPP21, RNAse P, hydrolase, tRNA processing; NMR {Pyrococcus furiosus} PDB: 2ki7_B
Probab=36.15 E-value=12 Score=26.85 Aligned_cols=39 Identities=15% Similarity=0.244 Sum_probs=21.0
Q ss_pred cccccccccccccCCCCCCCccccccccccCCceeecC-CCCcceEEeeeccCC
Q psy5308 80 DATCHICLKTKFADGVGHMCNYCNIRCCARCGGKVTLR-SNKVSVEVTTRGHNN 132 (137)
Q Consensus 80 ~~~C~~C~ktkf~~g~G~~C~~C~~rvC~rCg~~v~lr-~n~~~W~Ctvc~~~~ 132 (137)
...|..|+ +.++.| ..| .+++... .+.+++.|..|++..
T Consensus 60 R~~Ck~C~-s~LIPG--~t~-----------~vri~~~~k~~vv~tCl~Cg~~k 99 (123)
T 2k3r_A 60 RRYCKKCH-AFLVPG--INA-----------RVRLRQKRMPHIVVKCLECGHIM 99 (123)
T ss_dssp TSBCTTTC-CBCCBT--TTE-----------EEEEECSSSCEEEEEETTTTEEE
T ss_pred HHhccCCC-CEeECC--Cce-----------EEEEecCCccEEEEECCCCCCEE
Confidence 46799997 555544 222 2222111 113677788888754
No 91
>1ayg_A Cytochrome C-552; electron transport, porphyrin, ferrous iron; HET: HEC; NMR {Hydrogenobacter thermophilus} SCOP: a.3.1.1 PDB: 1ynr_A* 2ai5_A*
Probab=35.80 E-value=40 Score=20.50 Aligned_cols=19 Identities=16% Similarity=0.310 Sum_probs=15.5
Q ss_pred CCCCCCCCHHHHHHHHHHHH
Q psy5308 19 IPDLSHLTLEERQIIESVMM 38 (137)
Q Consensus 19 ~~dLS~LteeEr~~Il~VL~ 38 (137)
||.+ .||++|.+.|...|.
T Consensus 59 Mp~~-~Lsd~ei~~l~~yl~ 77 (80)
T 1ayg_A 59 MPPQ-NVTDAEAKQLAQWIL 77 (80)
T ss_dssp BCCC-CCCHHHHHHHHHHHH
T ss_pred CCCC-CCCHHHHHHHHHHHH
Confidence 4555 899999999998875
No 92
>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=35.76 E-value=4.8 Score=24.18 Aligned_cols=34 Identities=21% Similarity=0.453 Sum_probs=21.2
Q ss_pred cccccccccccccC---CCCCCCccccccccccCCce
Q psy5308 80 DATCHICLKTKFAD---GVGHMCNYCNIRCCARCGGK 113 (137)
Q Consensus 80 ~~~C~~C~ktkf~~---g~G~~C~~C~~rvC~rCg~~ 113 (137)
...|.||....... +....-..|.|.||..|-..
T Consensus 15 ~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~ 51 (69)
T 2ea6_A 15 TVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRD 51 (69)
T ss_dssp CCCCTTTCCCHHHHTTTTCCEEECSSSCEEEHHHHHH
T ss_pred CCCCcccCccccccccccCCeEeCCCCChhcHHHHHH
Confidence 57899999663211 12223456888888888533
No 93
>1a56_A C-551, ferricytochrome C-552; hemoprotein, prokaryotic electron transport; HET: HEC; NMR {Nitrosomonas europaea} SCOP: a.3.1.1 PDB: 1a8c_A*
Probab=35.52 E-value=24 Score=21.57 Aligned_cols=20 Identities=5% Similarity=0.247 Sum_probs=16.0
Q ss_pred CCCCCCCCHHHHHHHHHHHH
Q psy5308 19 IPDLSHLTLEERQIIESVMM 38 (137)
Q Consensus 19 ~~dLS~LteeEr~~Il~VL~ 38 (137)
||.+..||++|.+.|...|.
T Consensus 59 Mp~~~~Ls~~ei~~l~~yl~ 78 (81)
T 1a56_A 59 MPPNVNVSDADAKALADWIL 78 (81)
T ss_dssp BCSCCSSSSHHHHHHHHHHH
T ss_pred CCCCCCCCHHHHHHHHHHHH
Confidence 44447899999999998874
No 94
>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=35.49 E-value=8.6 Score=23.73 Aligned_cols=28 Identities=25% Similarity=0.508 Sum_probs=15.0
Q ss_pred cccccccccccccCCCCCCCccccccccccC
Q psy5308 80 DATCHICLKTKFADGVGHMCNYCNIRCCARC 110 (137)
Q Consensus 80 ~~~C~~C~ktkf~~g~G~~C~~C~~rvC~rC 110 (137)
...|.||.... .+. ..-..|.|.||..|
T Consensus 15 ~~~C~IC~~~~-~~p--~~~~~CgH~fC~~C 42 (72)
T 2djb_A 15 YILCSICKGYL-IDA--TTITECLHTFCKSC 42 (72)
T ss_dssp GGSCTTTSSCC-SSC--EECSSSCCEECHHH
T ss_pred CCCCCCCChHH-HCc--CEECCCCCHHHHHH
Confidence 57899998653 221 11124455555555
No 95
>1gdv_A Cytochrome C6; RED ALGA, electron transport; HET: HEM; 1.57A {Porphyra yezoensis} SCOP: a.3.1.1 PDB: 2zbo_A*
Probab=35.19 E-value=48 Score=19.92 Aligned_cols=17 Identities=18% Similarity=0.165 Sum_probs=14.4
Q ss_pred CCCHHHHHHHHHHHHhh
Q psy5308 24 HLTLEERQIIESVMMRQ 40 (137)
Q Consensus 24 ~LteeEr~~Il~VL~R~ 40 (137)
.||++|...|...|...
T Consensus 64 ~ls~~ei~~l~~yl~~~ 80 (85)
T 1gdv_A 64 RLVDEDIEDAANYVLSQ 80 (85)
T ss_dssp TSCHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHH
Confidence 79999999999988553
No 96
>3dr0_A Cytochrome C6; photosynthesis, cyanobacteria, electron transfer electron transport, heme, iron, metal-binding, thylakoid; HET: HEM; 1.23A {Synechococcus SP}
Probab=35.11 E-value=43 Score=20.39 Aligned_cols=22 Identities=14% Similarity=0.288 Sum_probs=17.1
Q ss_pred CCCC-CCCCHHHHHHHHHHHHhh
Q psy5308 19 IPDL-SHLTLEERQIIESVMMRQ 40 (137)
Q Consensus 19 ~~dL-S~LteeEr~~Il~VL~R~ 40 (137)
||.+ ..||++|.+.|...|...
T Consensus 65 Mp~~~~~ls~~ei~~l~~yl~~l 87 (93)
T 3dr0_A 65 MPAFGGRLSDADIANVAAYIADQ 87 (93)
T ss_dssp BCCCBTTBCHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCHHHHHHHHHHHHHH
Confidence 4545 679999999999988543
No 97
>2kn9_A Rubredoxin; metalloprotein, ssgcid, structural genomics, seattle structural genomics center for infectious electron transport, iron; NMR {Mycobacterium tuberculosis}
Probab=35.05 E-value=7.5 Score=26.41 Aligned_cols=13 Identities=8% Similarity=0.056 Sum_probs=9.3
Q ss_pred cceEEeeeccCCC
Q psy5308 121 VSVEVTTRGHNNN 133 (137)
Q Consensus 121 ~~W~Ctvc~~~~~ 133 (137)
..|+|+||++.+.
T Consensus 26 ~~y~C~vCGyvYD 38 (81)
T 2kn9_A 26 KLFRCIQCGFEYD 38 (81)
T ss_dssp CEEEETTTCCEEE
T ss_pred ceEEeCCCCEEEc
Confidence 3688888887654
No 98
>2puy_A PHD finger protein 21A; PHD finger, histone CODE, BRAF-HDAC complex, transcription; 1.43A {Homo sapiens}
Probab=35.04 E-value=11 Score=23.15 Aligned_cols=46 Identities=17% Similarity=0.317 Sum_probs=30.3
Q ss_pred cccccccccccccCCCCCCCccccccccccCCce-eecCCCCcceEEeeecc
Q psy5308 80 DATCHICLKTKFADGVGHMCNYCNIRCCARCGGK-VTLRSNKVSVEVTTRGH 130 (137)
Q Consensus 80 ~~~C~~C~ktkf~~g~G~~C~~C~~rvC~rCg~~-v~lr~n~~~W~Ctvc~~ 130 (137)
+..|.+|++. |.-..|..|..-+=..|-.. +...+.+ .|.|..|..
T Consensus 5 ~~~C~vC~~~----g~ll~Cd~C~~~fH~~Cl~ppl~~~p~g-~W~C~~C~~ 51 (60)
T 2puy_A 5 EDFCSVCRKS----GQLLMCDTCSRVYHLDCLDPPLKTIPKG-MWICPRCQD 51 (60)
T ss_dssp CSSCTTTCCC----SSCEECSSSSCEECGGGSSSCCSSCCCS-CCCCHHHHH
T ss_pred CCCCcCCCCC----CcEEEcCCCCcCEECCcCCCCcCCCCCC-ceEChhccC
Confidence 5779999975 34456777877776777542 2223333 799998754
No 99
>3jyw_9 60S ribosomal protein L43; eukaryotic ribosome, RACK1 protein, flexible fitting; 8.90A {Thermomyces lanuginosus}
Probab=34.97 E-value=11 Score=25.07 Aligned_cols=11 Identities=27% Similarity=0.616 Sum_probs=8.8
Q ss_pred ccccccccccc
Q psy5308 80 DATCHICLKTK 90 (137)
Q Consensus 80 ~~~C~~C~ktk 90 (137)
..+|..|.++.
T Consensus 26 ky~C~fCgk~~ 36 (72)
T 3jyw_9 26 RYDCSFCGKKT 36 (72)
T ss_dssp CBCCSSCCSSC
T ss_pred CccCCCCCCce
Confidence 57799999885
No 100
>3o36_A Transcription intermediary factor 1-alpha; TRIM24, PHD finger, bromodomain, H4K16 acetylation, breast C transcription-protein binding complex; HET: ALY; 1.70A {Homo sapiens} PDB: 3o33_A* 3o34_A* 3o35_A* 3o37_A
Probab=34.91 E-value=13 Score=27.54 Aligned_cols=47 Identities=17% Similarity=0.193 Sum_probs=30.7
Q ss_pred cccccccccccccCCCCCCCccccccccccCCce-eecCCCCcceEEeeeccC
Q psy5308 80 DATCHICLKTKFADGVGHMCNYCNIRCCARCGGK-VTLRSNKVSVEVTTRGHN 131 (137)
Q Consensus 80 ~~~C~~C~ktkf~~g~G~~C~~C~~rvC~rCg~~-v~lr~n~~~W~Ctvc~~~ 131 (137)
+..|.+|++. |.-..|..|..-+-..|=.. +...+.+ .|.|..|-..
T Consensus 4 ~~~C~~C~~~----g~ll~Cd~C~~~~H~~C~~p~l~~~p~~-~W~C~~C~~~ 51 (184)
T 3o36_A 4 EDWCAVCQNG----GELLCCEKCPKVFHLSCHVPTLTNFPSG-EWICTFCRDL 51 (184)
T ss_dssp CSSCTTTCCC----SSCEECSSSSCEECTTTSSSCCSSCCSS-CCCCTTTSCS
T ss_pred CCccccCCCC----CeeeecCCCCcccCccccCCCCCCCCCC-CEECccccCc
Confidence 5679999865 33457888888888888422 1112323 6999998653
No 101
>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase, ubiquitylation, sumoylation, zinc-FI metal binding protein; 1.80A {Rattus norvegicus}
Probab=34.87 E-value=5.7 Score=24.10 Aligned_cols=33 Identities=21% Similarity=0.522 Sum_probs=19.8
Q ss_pred ccccccccccccc---CCCCCCCccccccccccCCc
Q psy5308 80 DATCHICLKTKFA---DGVGHMCNYCNIRCCARCGG 112 (137)
Q Consensus 80 ~~~C~~C~ktkf~---~g~G~~C~~C~~rvC~rCg~ 112 (137)
+..|.||...... .+.-..-..|.|.||..|-.
T Consensus 10 ~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~ 45 (71)
T 3ng2_A 10 TVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLR 45 (71)
T ss_dssp CCBCTTTCCBHHHHHTTTCCEEECTTSCEEEHHHHH
T ss_pred CCCCcccChhhhccccccCCeEeCCCCChHhHHHHH
Confidence 6789999966311 11222445677777777743
No 102
>1g25_A CDK-activating kinase assembly factor MAT1; ring finger (C3HC4), metal binding protein; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=34.61 E-value=5.8 Score=23.99 Aligned_cols=34 Identities=29% Similarity=0.583 Sum_probs=17.6
Q ss_pred cccccccccccccCCCCC-CCccccccccccCCce
Q psy5308 80 DATCHICLKTKFADGVGH-MCNYCNIRCCARCGGK 113 (137)
Q Consensus 80 ~~~C~~C~ktkf~~g~G~-~C~~C~~rvC~rCg~~ 113 (137)
+.+|.||..+.|.+..-. +=..|.|.||..|-..
T Consensus 3 ~~~C~IC~~~~~~~~~~~~~~~~CgH~fC~~Ci~~ 37 (65)
T 1g25_A 3 DQGCPRCKTTKYRNPSLKLMVNVCGHTLCESCVDL 37 (65)
T ss_dssp TTCCSTTTTHHHHCSSCCEEECTTCCCEEHHHHHH
T ss_pred CCcCCcCCCCccCCCccCeecCCCCCHhHHHHHHH
Confidence 467999987333322110 0124666666666433
No 103
>1ffk_W Ribosomal protein L37AE; ribosome assembly, RNA-RNA, protein-RNA, protein-protein; 2.40A {Haloarcula marismortui} SCOP: g.41.8.1 PDB: 1jj2_Y 1k73_1* 1k8a_1* 1k9m_1* 1kc8_1* 1kd1_1* 1kqs_Y* 1m1k_1* 1m90_1* 1n8r_1* 1nji_1* 1q7y_1* 1q81_1* 1q82_1* 1q86_1* 1qvf_Y 1qvg_Y 1w2b_Y 3cxc_Y*
Probab=34.56 E-value=10 Score=25.23 Aligned_cols=11 Identities=27% Similarity=0.576 Sum_probs=8.6
Q ss_pred ccccccccccc
Q psy5308 80 DATCHICLKTK 90 (137)
Q Consensus 80 ~~~C~~C~ktk 90 (137)
..+|..|.++.
T Consensus 27 ky~C~fCgk~~ 37 (73)
T 1ffk_W 27 KYKCPVCGFPK 37 (73)
T ss_pred CccCCCCCCce
Confidence 57799998764
No 104
>1z60_A TFIIH basal transcription factor complex P44 subunit; basic transcription factor, zinc binding protein, ring finger; NMR {Homo sapiens} SCOP: g.49.1.2
Probab=34.33 E-value=5.6 Score=25.42 Aligned_cols=33 Identities=24% Similarity=0.471 Sum_probs=25.6
Q ss_pred ccccccccccccCCCCCCCccccccccccCCcee
Q psy5308 81 ATCHICLKTKFADGVGHMCNYCNIRCCARCGGKV 114 (137)
Q Consensus 81 ~~C~~C~ktkf~~g~G~~C~~C~~rvC~rCg~~v 114 (137)
+.|--|++. |.+...-.|..|+..||..|-+++
T Consensus 16 ~~C~~C~~~-~~~~~~y~C~~C~~~FC~dCD~fi 48 (59)
T 1z60_A 16 RFCYGCQGE-LKDQHVYVCAVCQNVFCVDCDVFV 48 (59)
T ss_dssp CEETTTTEE-CTTSEEECCTTTTCCBCHHHHHTT
T ss_pred CcccccCcc-cCCCccEECCccCcCcccchhHHH
Confidence 569999855 554333679999999999998775
No 105
>2yql_A PHD finger protein 21A; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=34.19 E-value=14 Score=22.47 Aligned_cols=46 Identities=17% Similarity=0.300 Sum_probs=30.8
Q ss_pred ccccccccccccccCCCCCCCccccccccccCCce-eecCCCCcceEEeeec
Q psy5308 79 LDATCHICLKTKFADGVGHMCNYCNIRCCARCGGK-VTLRSNKVSVEVTTRG 129 (137)
Q Consensus 79 ~~~~C~~C~ktkf~~g~G~~C~~C~~rvC~rCg~~-v~lr~n~~~W~Ctvc~ 129 (137)
.+..|.+|++. +.-..|..|..-+=..|-.. +...+.+ .|.|..|.
T Consensus 8 ~~~~C~vC~~~----g~ll~Cd~C~~~~H~~Cl~ppl~~~p~g-~W~C~~C~ 54 (56)
T 2yql_A 8 HEDFCSVCRKS----GQLLMCDTCSRVYHLDCLDPPLKTIPKG-MWICPRCQ 54 (56)
T ss_dssp SCCSCSSSCCS----SCCEECSSSSCEECSSSSSSCCCSCCCS-SCCCHHHH
T ss_pred CCCCCccCCCC----CeEEEcCCCCcceECccCCCCcCCCCCC-ceEChhhh
Confidence 36789999975 34456888887777777542 2223333 79998874
No 106
>4rxn_A Rubredoxin; electron transfer(iron-sulfur protein); 1.20A {Clostridium pasteurianum} SCOP: g.41.5.1 PDB: 5rxn_A 1bfy_A 1fhh_A 1fhm_A 1irn_A 1iro_A 1r0f_A 1r0g_A 1r0h_A 1r0i_A 1r0j_A 1t9q_A 1c09_A 1b2j_A 1b13_A 1smm_A 1smu_A 1smw_A 1be7_A 1t9o_A ...
Probab=34.00 E-value=9.6 Score=23.90 Aligned_cols=11 Identities=18% Similarity=-0.016 Sum_probs=6.5
Q ss_pred ceEEeeeccCC
Q psy5308 122 SVEVTTRGHNN 132 (137)
Q Consensus 122 ~W~Ctvc~~~~ 132 (137)
.|+|+||++.+
T Consensus 3 ~y~C~vCGyvY 13 (54)
T 4rxn_A 3 KYTCTVCGYIY 13 (54)
T ss_dssp CEEETTTCCEE
T ss_pred ceECCCCCeEE
Confidence 36666666544
No 107
>1yk4_A Rubredoxin, RD; electron transport; 0.69A {Pyrococcus abyssi} PDB: 2pya_A 1yk5_A 1bq8_A 1bq9_A* 3kyu_A 3kyv_A 3kyw_A 3kyx_A 3kyy_A 3ryg_A 3rz6_A 3rzt_A 3ss2_A 1brf_A 1caa_A 1cad_A 1vcx_A 1zrp_A 1iu5_A 1iu6_A ...
Probab=33.97 E-value=14 Score=22.81 Aligned_cols=10 Identities=10% Similarity=-0.080 Sum_probs=7.9
Q ss_pred ceEEeeeccC
Q psy5308 122 SVEVTTRGHN 131 (137)
Q Consensus 122 ~W~Ctvc~~~ 131 (137)
-|+|-+|+..
T Consensus 35 dw~CP~Cg~~ 44 (52)
T 1yk4_A 35 DWVCPLCGAP 44 (52)
T ss_dssp TCBCTTTCCB
T ss_pred CCcCCCCCCC
Confidence 6999998764
No 108
>2exv_A Cytochrome C-551; alpha helix, heme C, electron transport; HET: HEC; 1.86A {Pseudomonas aeruginosa} PDB: 2pac_A* 351c_A* 451c_A* 1dvv_A*
Probab=33.81 E-value=35 Score=20.65 Aligned_cols=19 Identities=16% Similarity=0.307 Sum_probs=15.5
Q ss_pred CCCCCCCCHHHHHHHHHHHH
Q psy5308 19 IPDLSHLTLEERQIIESVMM 38 (137)
Q Consensus 19 ~~dLS~LteeEr~~Il~VL~ 38 (137)
||.+ .||++|.+.|...|.
T Consensus 61 Mp~~-~ls~~ei~~l~~yl~ 79 (82)
T 2exv_A 61 MPPN-AVSDDEAQTLAKWVL 79 (82)
T ss_dssp BCCC-CCCHHHHHHHHHHHH
T ss_pred CCCC-CCCHHHHHHHHHHHH
Confidence 4545 899999999998874
No 109
>1xwh_A Autoimmune regulator; PHD domain, Zn binding domain, apeced, nucleosome, E3 ligase, transcription; NMR {Homo sapiens} PDB: 2ke1_A 2kft_A
Probab=33.69 E-value=14 Score=23.25 Aligned_cols=49 Identities=12% Similarity=0.226 Sum_probs=31.6
Q ss_pred ccccccccccccccCCCCCCCccccccccccCCce-eecCCCCcceEEeeeccCC
Q psy5308 79 LDATCHICLKTKFADGVGHMCNYCNIRCCARCGGK-VTLRSNKVSVEVTTRGHNN 132 (137)
Q Consensus 79 ~~~~C~~C~ktkf~~g~G~~C~~C~~rvC~rCg~~-v~lr~n~~~W~Ctvc~~~~ 132 (137)
.+..|.+|+.. +.-..|..|..-+=..|=.. +...+.+ .|.|..|....
T Consensus 7 ~~~~C~vC~~~----g~ll~CD~C~~~fH~~Cl~ppl~~~P~g-~W~C~~C~~~~ 56 (66)
T 1xwh_A 7 NEDECAVCRDG----GELICCDGCPRAFHLACLSPPLREIPSG-TWRCSSCLQAT 56 (66)
T ss_dssp CCCSBSSSSCC----SSCEECSSCCCEECTTTSSSCCSSCCSS-CCCCHHHHHTC
T ss_pred CCCCCccCCCC----CCEEEcCCCChhhcccccCCCcCcCCCC-CeECccccCcc
Confidence 36789999965 34456777776666667442 2223333 89999987654
No 110
>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens}
Probab=33.52 E-value=14 Score=22.95 Aligned_cols=47 Identities=23% Similarity=0.439 Sum_probs=27.3
Q ss_pred cccccccccccccCCCCCCCccccccccccCCceeecCCCCcceEEeeeccC
Q psy5308 80 DATCHICLKTKFADGVGHMCNYCNIRCCARCGGKVTLRSNKVSVEVTTRGHN 131 (137)
Q Consensus 80 ~~~C~~C~ktkf~~g~G~~C~~C~~rvC~rCg~~v~lr~n~~~W~Ctvc~~~ 131 (137)
+..|.||... |.+. ..-..|.|.||..|-....... + .-.|.+|-..
T Consensus 15 ~~~C~IC~~~-~~~p--~~~~~CgH~fC~~Ci~~~~~~~-~-~~~CP~Cr~~ 61 (74)
T 2yur_A 15 ELLCLICKDI-MTDA--VVIPCCGNSYCDECIRTALLES-D-EHTCPTCHQN 61 (74)
T ss_dssp GGSCSSSCCC-CTTC--EECSSSCCEECTTHHHHHHHHS-S-SSCCSSSCCS
T ss_pred CCCCcCCChH-HhCC--eEcCCCCCHHHHHHHHHHHHhc-C-CCcCCCCCCc
Confidence 5789999854 3332 2223488888888854432211 1 2467776553
No 111
>2w9y_A CE-FAR-7, fatty acid/retinol binding protein protein 7, isoform A, confirmed by transcript...; lipid transport; HET: CSX; 1.80A {Caenorhabditis elegans}
Probab=33.49 E-value=5 Score=29.95 Aligned_cols=35 Identities=14% Similarity=0.232 Sum_probs=24.5
Q ss_pred CCCCCHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Q psy5308 22 LSHLTLEERQIIESVMMRQKQEEERELEIMRRKQDE 57 (137)
Q Consensus 22 LS~LteeEr~~Il~VL~R~~~le~~E~~RirkL~~e 57 (137)
++.||++|+.++.+|.+...... -|++.|.-|++.
T Consensus 24 ~~~Lt~eeK~~Lkev~kn~~~f~-~e~e~i~alK~K 58 (140)
T 2w9y_A 24 SSSITADEKPVLHEVFQKHSCFS-QCGEMIDEVSKK 58 (140)
T ss_dssp HHHCCTTTHHHHHHHHTTCCC-----TTHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHHhhcC-CHHHHHHHHHHh
Confidence 57899999999999999887765 555655555544
No 112
>2ecw_A Tripartite motif-containing protein 30; metal binding protein, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=33.26 E-value=9.1 Score=23.70 Aligned_cols=30 Identities=33% Similarity=0.699 Sum_probs=18.5
Q ss_pred cccccccccccccCCCCCCCccccccccccCCce
Q psy5308 80 DATCHICLKTKFADGVGHMCNYCNIRCCARCGGK 113 (137)
Q Consensus 80 ~~~C~~C~ktkf~~g~G~~C~~C~~rvC~rCg~~ 113 (137)
...|.||... |.+.. . ..|.|.||..|-..
T Consensus 19 ~~~C~IC~~~-~~~p~--~-~~CgH~fC~~Ci~~ 48 (85)
T 2ecw_A 19 EVTCPICLEL-LKEPV--S-ADCNHSFCRACITL 48 (85)
T ss_dssp TTSCTTTCSC-CSSCE--E-CTTSCCBCHHHHHH
T ss_pred CCCCcCCChh-hCcce--e-CCCCCHHHHHHHHH
Confidence 5789999855 33321 2 23777777777543
No 113
>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=33.16 E-value=7.3 Score=23.80 Aligned_cols=46 Identities=17% Similarity=0.342 Sum_probs=26.7
Q ss_pred cccccccccccccCCCCCCCccccccccccCCceeecCCCCcceEEeeecc
Q psy5308 80 DATCHICLKTKFADGVGHMCNYCNIRCCARCGGKVTLRSNKVSVEVTTRGH 130 (137)
Q Consensus 80 ~~~C~~C~ktkf~~g~G~~C~~C~~rvC~rCg~~v~lr~n~~~W~Ctvc~~ 130 (137)
...|.||... |.+.. . ..|.|.||..|-...... +...-.|.+|-.
T Consensus 20 ~~~C~IC~~~-~~~~~--~-~~CgH~fC~~Ci~~~~~~-~~~~~~CP~Cr~ 65 (73)
T 2ysl_A 20 EVICPICLDI-LQKPV--T-IDCGHNFCLKCITQIGET-SCGFFKCPLCKT 65 (73)
T ss_dssp CCBCTTTCSB-CSSEE--E-CTTCCEEEHHHHHHHCSS-SCSCCCCSSSCC
T ss_pred CCEeccCCcc-cCCeE--E-cCCCChhhHHHHHHHHHc-CCCCCCCCCCCC
Confidence 5789999854 33211 1 168888999996443211 112346777644
No 114
>1twf_L ABC10-alpha, DNA-directed RNA polymerases I, II, and III 7.7 K polypeptide; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP: g.41.9.2 PDB: 1i3q_L 1i6h_L 1k83_L* 1nik_L 1nt9_L 1pqv_L 1r5u_L 1r9s_L* 1r9t_L* 1sfo_L* 1twa_L* 1twc_L* 1i50_L* 1twg_L* 1twh_L* 1wcm_L 1y1v_L 1y1w_L 1y1y_L 1y77_L* ...
Probab=32.60 E-value=18 Score=23.67 Aligned_cols=11 Identities=18% Similarity=0.401 Sum_probs=8.1
Q ss_pred ccccccccccc
Q psy5308 80 DATCHICLKTK 90 (137)
Q Consensus 80 ~~~C~~C~ktk 90 (137)
.-.|+.|+...
T Consensus 28 ~Y~C~~CG~~~ 38 (70)
T 1twf_L 28 KYICAECSSKL 38 (70)
T ss_dssp CEECSSSCCEE
T ss_pred EEECCCCCCcc
Confidence 45799998663
No 115
>1s24_A Rubredoxin 2; electron transport; NMR {Pseudomonas oleovorans} SCOP: g.41.5.1
Probab=32.12 E-value=8.6 Score=26.44 Aligned_cols=11 Identities=27% Similarity=0.090 Sum_probs=6.2
Q ss_pred ceEEeeeccCC
Q psy5308 122 SVEVTTRGHNN 132 (137)
Q Consensus 122 ~W~Ctvc~~~~ 132 (137)
.|+|++|++.+
T Consensus 35 ~y~C~vCGyvY 45 (87)
T 1s24_A 35 KWICITCGHIY 45 (87)
T ss_dssp EEEETTTTEEE
T ss_pred eEECCCCCeEe
Confidence 46666665544
No 116
>3j21_i 50S ribosomal protein L37AE; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=32.08 E-value=10 Score=25.87 Aligned_cols=11 Identities=27% Similarity=0.764 Sum_probs=8.5
Q ss_pred ccccccccccc
Q psy5308 80 DATCHICLKTK 90 (137)
Q Consensus 80 ~~~C~~C~ktk 90 (137)
..+|..|.++.
T Consensus 35 ky~CpfCGk~~ 45 (83)
T 3j21_i 35 KHTCPVCGRKA 45 (83)
T ss_dssp CBCCSSSCSSC
T ss_pred ccCCCCCCCce
Confidence 46799998775
No 117
>1je8_A Nitrate/nitrite response regulator protein NARL; protein-DNA complex, two-component response regulator, helix-turn-helix, DNA bending; 2.12A {Escherichia coli} SCOP: a.4.6.2 PDB: 1zg1_A 1zg5_A
Probab=31.99 E-value=53 Score=20.72 Aligned_cols=18 Identities=33% Similarity=0.516 Sum_probs=14.2
Q ss_pred CCCCCCCCHHHHHHHHHH
Q psy5308 19 IPDLSHLTLEERQIIESV 36 (137)
Q Consensus 19 ~~dLS~LteeEr~~Il~V 36 (137)
.--+..||+.|++++.-+
T Consensus 16 ~~~~~~Lt~~e~~vl~l~ 33 (82)
T 1je8_A 16 ERDVNQLTPRERDILKLI 33 (82)
T ss_dssp -CCGGGSCHHHHHHHHHH
T ss_pred HHHHccCCHHHHHHHHHH
Confidence 444688999999999875
No 118
>3dmi_A Cytochrome C6; electron transport, transit peptide; HET: HEM; 1.50A {Phaeodactylum tricornutum} SCOP: a.3.1.1
Probab=31.86 E-value=56 Score=19.80 Aligned_cols=22 Identities=18% Similarity=0.353 Sum_probs=16.7
Q ss_pred CCCCC-CCCHHHHHHHHHHHHhh
Q psy5308 19 IPDLS-HLTLEERQIIESVMMRQ 40 (137)
Q Consensus 19 ~~dLS-~LteeEr~~Il~VL~R~ 40 (137)
||.+. .||++|...|...|...
T Consensus 60 Mp~~~~~ls~~ei~~l~~yl~~~ 82 (88)
T 3dmi_A 60 MPAFGGRLSDEEIANVAAYVLAS 82 (88)
T ss_dssp BCCCTTTSCHHHHHHHHHHHHHH
T ss_pred CCCcCCCCCHHHHHHHHHHHHHH
Confidence 44444 69999999999988543
No 119
>3rk3_E Complexin-1; snare proteins, membrane fusion, membrane protein-exocytosis transport protein complex, membrane protein-exocytosis COMP; 3.50A {Homo sapiens} PDB: 3rl0_g
Probab=31.84 E-value=1e+02 Score=19.85 Aligned_cols=30 Identities=23% Similarity=0.204 Sum_probs=19.5
Q ss_pred HhhHHHHHHHHHHH---HHHHHHHHHHHHHHHH
Q psy5308 38 MRQKQEEERELEIM---RRKQDEVHLLEQSIRQ 67 (137)
Q Consensus 38 ~R~~~le~~E~~Ri---rkL~~el~~lk~~~~~ 67 (137)
.+++.+++.|++|- +++..+-+.|++.|+.
T Consensus 16 E~~eAlrq~Ee~Rk~Kh~kME~ERE~mRQ~IRd 48 (63)
T 3rk3_E 16 EAQEALRQAEEERKAKYAKMEAEREAVRQGIRD 48 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566666666553 4566777888888854
No 120
>2ku3_A Bromodomain-containing protein 1; PHD finger, chromatin regulator, metal-binding, finger, signaling protein; NMR {Homo sapiens}
Probab=31.00 E-value=6.2 Score=25.67 Aligned_cols=52 Identities=21% Similarity=0.412 Sum_probs=33.1
Q ss_pred cccccccccccccc-ccCCCCCCCccccccccccCCceeecCCCCcceEEeeecc
Q psy5308 77 VELDATCHICLKTK-FADGVGHMCNYCNIRCCARCGGKVTLRSNKVSVEVTTRGH 130 (137)
Q Consensus 77 ~~~~~~C~~C~ktk-f~~g~G~~C~~C~~rvC~rCg~~v~lr~n~~~W~Ctvc~~ 130 (137)
......|.+|++.. ...+.-..|..|..-|=..|=+-. ..+.+ .|.|..|..
T Consensus 13 ~~~~~~C~vC~~~~s~~~~~ll~CD~C~~~~H~~Cl~~~-~vP~g-~W~C~~C~~ 65 (71)
T 2ku3_A 13 IDEDAVCSICMDGESQNSNVILFCDMCNLAVHQECYGVP-YIPEG-QWLCRHCLQ 65 (71)
T ss_dssp CCSSCSCSSSCCCCCCSSSCEEECSSSCCEEEHHHHTCS-SCCSS-CCCCHHHHH
T ss_pred CCCCCCCCCCCCCCCCCCCCEEECCCCCCccccccCCCC-cCCCC-CcCCccCcC
Confidence 33468899998663 233455677777776666664432 23334 799998754
No 121
>1dl6_A Transcription factor II B (TFIIB); zinc ribbon, gene regulation; NMR {Homo sapiens} SCOP: g.41.3.1 PDB: 1rly_A 1ro4_A
Probab=30.95 E-value=17 Score=22.65 Aligned_cols=27 Identities=26% Similarity=0.511 Sum_probs=17.5
Q ss_pred ccccccccccccC--CCCCCCccccccccccCCcee
Q psy5308 81 ATCHICLKTKFAD--GVGHMCNYCNIRCCARCGGKV 114 (137)
Q Consensus 81 ~~C~~C~ktkf~~--g~G~~C~~C~~rvC~rCg~~v 114 (137)
..|..|..+.+.. ..|. .||..||..+
T Consensus 12 ~~Cp~C~~~~lv~D~~~ge-------~vC~~CGlVl 40 (58)
T 1dl6_A 12 VTCPNHPDAILVEDYRAGD-------MICPECGLVV 40 (58)
T ss_dssp CSBTTBSSSCCEECSSSCC-------EECTTTCCEE
T ss_pred ccCcCCCCCceeEeCCCCe-------EEeCCCCCEE
Confidence 4688887654433 2343 7888998665
No 122
>1kbe_A Kinase suppressor of RAS; KSR, cysteine-rich domain, zinc- binding protein, signaling protein; NMR {Mus musculus} SCOP: g.49.1.1 PDB: 1kbf_A
Probab=30.94 E-value=11 Score=23.03 Aligned_cols=31 Identities=26% Similarity=0.854 Sum_probs=23.7
Q ss_pred cccccccccccccCCCCCCCccccccccccCCce
Q psy5308 80 DATCHICLKTKFADGVGHMCNYCNIRCCARCGGK 113 (137)
Q Consensus 80 ~~~C~~C~ktkf~~g~G~~C~~C~~rvC~rCg~~ 113 (137)
..+|..|++..| + |..|.+|+-++=.+|...
T Consensus 14 ~t~C~~C~k~i~-~--G~kC~~Ck~~cH~kC~~~ 44 (49)
T 1kbe_A 14 SQVCNVCQKSMI-F--GVKCKHCRLKCHNKCTKE 44 (49)
T ss_dssp SCCCSSSCCSSC-C--EEEETTTTEEESSSCTTT
T ss_pred CcCccccCceeE-C--cCCCCCCCCccchhhcCc
Confidence 368999998876 3 578999988877778654
No 123
>1mz4_A Cytochrome C550; PSII associated cytochrome, electron transport; HET: HEM; 1.80A {Thermosynechococcus elongatus} SCOP: a.3.1.1 PDB: 1izl_V* 1s5l_V* 2axt_V* 3a0b_V* 3a0h_V* 3arc_V* 3bz1_V* 3bz2_V* 3kzi_V* 3prq_V* 3prr_V*
Probab=30.69 E-value=38 Score=22.99 Aligned_cols=23 Identities=22% Similarity=0.398 Sum_probs=18.0
Q ss_pred CCCCCCCCCHHHHHHHHHHHHhh
Q psy5308 18 IIPDLSHLTLEERQIIESVMMRQ 40 (137)
Q Consensus 18 ~~~dLS~LteeEr~~Il~VL~R~ 40 (137)
.||.+..||++|...|...|..+
T Consensus 100 ~MP~~~~Lsd~ei~alaaYl~~~ 122 (137)
T 1mz4_A 100 IFPKMRNLTEKDLVAIAGHILVE 122 (137)
T ss_dssp TSGGGTTCCHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCHHHHHHHHHHHHHc
Confidence 35555679999999999988654
No 124
>3u5n_A E3 ubiquitin-protein ligase TRIM33; TRIM33, PHD, bromodomain, TGF-beta, epigenetics, methylation, K9ME3, K14AC, transcription; HET: M3L ALY; 1.95A {Homo sapiens} PDB: 3u5m_A* 3u5o_A* 3u5p_A*
Probab=30.56 E-value=16 Score=27.68 Aligned_cols=47 Identities=13% Similarity=0.115 Sum_probs=30.1
Q ss_pred cccccccccccccCCCCCCCccccccccccCCce-eecCCCCcceEEeeeccC
Q psy5308 80 DATCHICLKTKFADGVGHMCNYCNIRCCARCGGK-VTLRSNKVSVEVTTRGHN 131 (137)
Q Consensus 80 ~~~C~~C~ktkf~~g~G~~C~~C~~rvC~rCg~~-v~lr~n~~~W~Ctvc~~~ 131 (137)
+..|.+|+... .-..|..|..-+-..|=.. +...+.+ .|.|..|-..
T Consensus 7 ~~~C~~C~~~g----~ll~Cd~C~~~~H~~Cl~p~l~~~p~~-~W~C~~C~~~ 54 (207)
T 3u5n_A 7 EDWCAVCQNGG----DLLCCEKCPKVFHLTCHVPTLLSFPSG-DWICTFCRDI 54 (207)
T ss_dssp CSSBTTTCCCE----EEEECSSSSCEECTTTSSSCCSSCCSS-CCCCTTTSCS
T ss_pred CCCCCCCCCCC----ceEEcCCCCCccCCccCCCCCCCCCCC-CEEeCceeCc
Confidence 57799999653 2336777887777777422 1212323 6999998654
No 125
>1pcx_A Protein transport protein SEC24; 2.50A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 PDB: 1pd0_A 1pd1_A
Probab=30.53 E-value=12 Score=34.24 Aligned_cols=33 Identities=9% Similarity=-0.115 Sum_probs=21.5
Q ss_pred CCCCccccccccccCCceeecCCCCcceEEeeeccCC
Q psy5308 96 GHMCNYCNIRCCARCGGKVTLRSNKVSVEVTTRGHNN 132 (137)
Q Consensus 96 G~~C~~C~~rvC~rCg~~v~lr~n~~~W~Ctvc~~~~ 132 (137)
-..|..|+-.+..-|... . ++..|+|.+|.+.|
T Consensus 112 pvRC~~CrayiNPf~~~~---~-~g~~W~C~~C~~~N 144 (810)
T 1pcx_A 112 IVRCRRCRSYMNPFVTFI---E-QGRRWRCNFCRLAN 144 (810)
T ss_dssp CCBCTTTCCBCCTTCEEE---T-TTTEEECTTTCCEE
T ss_pred CCccCCccCEecCceEEe---C-CCCEEEccCCCCcC
Confidence 355666666666666422 2 23589999998765
No 126
>2l4d_A SCO1/SENC family protein/cytochrome C; electron transfer, electron transport; HET: HEC; NMR {Pseudomonas putida}
Probab=30.52 E-value=70 Score=20.23 Aligned_cols=22 Identities=18% Similarity=0.288 Sum_probs=17.0
Q ss_pred CCCCCCCCCHHHHHHHHHHHHhh
Q psy5308 18 IIPDLSHLTLEERQIIESVMMRQ 40 (137)
Q Consensus 18 ~~~dLS~LteeEr~~Il~VL~R~ 40 (137)
.||.+ .||++|...|...|...
T Consensus 75 ~Mp~~-~Ls~~ei~~l~~yl~~~ 96 (110)
T 2l4d_A 75 AMPNM-RLGDAEVSALISYLEEE 96 (110)
T ss_dssp CCCCC-CCCHHHHHHHHHHHHHH
T ss_pred cCCCC-CCCHHHHHHHHHHHHHc
Confidence 45555 59999999999988543
No 127
>3nkz_A Flagellar protein FLIT; structural genomics, PSI-2, protein structure initiative, MC midwest center for structural genomics; HET: MSE PG4; 2.11A {Yersinia enterocolitica subsp}
Probab=30.09 E-value=79 Score=22.40 Aligned_cols=37 Identities=11% Similarity=-0.020 Sum_probs=26.6
Q ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Q psy5308 27 LEERQIIESVMMRQKQEEERELEIMRRKQDEVHLLEQ 63 (137)
Q Consensus 27 eeEr~~Il~VL~R~~~le~~E~~RirkL~~el~~lk~ 63 (137)
+.-+++|-.+|..|.+.+..=+.|+.+|...+...++
T Consensus 65 ~~~~~lL~~IL~nDaeIR~Ll~~rl~eL~~li~~~~r 101 (123)
T 3nkz_A 65 DLLREKLRAILDNEIEIKRLLQLRLDRLSDLVGQSTK 101 (123)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC----
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 3456778888889999999888888888877766643
No 128
>2ro1_A Transcription intermediary factor 1-beta; KAP, TIF, PHD finger, bromodomain, SUMO, acetylation, alternative splicing, metal-binding, nucleus; NMR {Homo sapiens}
Probab=30.06 E-value=19 Score=27.11 Aligned_cols=46 Identities=17% Similarity=0.281 Sum_probs=30.0
Q ss_pred cccccccccccccCCCCCCCccccccccccCCce-eecCCCCcceEEeeecc
Q psy5308 80 DATCHICLKTKFADGVGHMCNYCNIRCCARCGGK-VTLRSNKVSVEVTTRGH 130 (137)
Q Consensus 80 ~~~C~~C~ktkf~~g~G~~C~~C~~rvC~rCg~~-v~lr~n~~~W~Ctvc~~ 130 (137)
+..|.+|++.. .-..|..|-.-+-..|=.. +...+.+ .|.|..|..
T Consensus 2 ~~~C~~C~~~g----~ll~Cd~C~~~~H~~Cl~p~l~~~p~g-~W~C~~C~~ 48 (189)
T 2ro1_A 2 ATICRVCQKPG----DLVMCNQCEFCFHLDCHLPALQDVPGE-EWSCSLCHV 48 (189)
T ss_dssp CCCBTTTCCCS----SCCCCTTTCCBCCSTTSTTCCSSCCCT-TCCTTTTSC
T ss_pred CCcCccCCCCC----ceeECCCCCchhccccCCCCcccCCCC-CCCCcCccC
Confidence 46799999653 3446778887777777532 2222334 799999864
No 129
>3t6p_A Baculoviral IAP repeat-containing protein 2; ring, BIR, CARD, UBA, apoptosis, ubiquitin ligase, SMAC/ ubiquitin, caspase, IAP family, SMAC mimetic; 1.90A {Homo sapiens} PDB: 1qbh_A 2l9m_A 3eb5_A 3eb6_A 4auq_B
Probab=30.01 E-value=35 Score=28.16 Aligned_cols=10 Identities=30% Similarity=1.155 Sum_probs=8.0
Q ss_pred cccccccccc
Q psy5308 80 DATCHICLKT 89 (137)
Q Consensus 80 ~~~C~~C~kt 89 (137)
+..|.||...
T Consensus 295 ~~~C~IC~~~ 304 (345)
T 3t6p_A 295 ERTCKVCMDK 304 (345)
T ss_dssp TCBCTTTSSS
T ss_pred CCCCCccCCc
Confidence 5789999954
No 130
>1ls9_A Cytochrome C6; omega loop, antiparallel beta-sheet, protoporphyrin IX containing Fe, heme, HAEM, electron transport; HET: HEM; 1.30A {Cladophora glomerata} SCOP: a.3.1.1
Probab=29.79 E-value=58 Score=20.08 Aligned_cols=23 Identities=13% Similarity=0.317 Sum_probs=17.3
Q ss_pred CCCC-CCCCHHHHHHHHHHHHhhH
Q psy5308 19 IPDL-SHLTLEERQIIESVMMRQK 41 (137)
Q Consensus 19 ~~dL-S~LteeEr~~Il~VL~R~~ 41 (137)
||.+ ..||++|...|...|....
T Consensus 63 Mp~~~~~ls~~ei~~l~~yl~~~~ 86 (91)
T 1ls9_A 63 MPAWADRLDEDDIEAVSNYVYDQA 86 (91)
T ss_dssp BCCCTTTSCHHHHHHHHHHHHHHH
T ss_pred CcchhhhCCHHHHHHHHHHHHHhc
Confidence 4544 3799999999999886543
No 131
>2jmo_A Parkin; IBR, E3 ligase, zinc binding domain, RBR; NMR {Homo sapiens}
Probab=29.61 E-value=28 Score=22.64 Aligned_cols=35 Identities=20% Similarity=0.477 Sum_probs=25.0
Q ss_pred cccccc--ccccccc--CCCCCCCc-----cccccccccCCcee
Q psy5308 80 DATCHI--CLKTKFA--DGVGHMCN-----YCNIRCCARCGGKV 114 (137)
Q Consensus 80 ~~~C~~--C~ktkf~--~g~G~~C~-----~C~~rvC~rCg~~v 114 (137)
-.-|.. |+..... +..-..|. .|.+.||..|+...
T Consensus 25 ~~~CP~p~C~~~v~~~~~~~~v~C~~~~~~~C~~~FC~~C~~~w 68 (80)
T 2jmo_A 25 GVLCPRPGCGAGLLPEPDQRKVTCEGGNGLGCGFAFCRECKEAY 68 (80)
T ss_dssp SCCCCSSSCCCCCCCCSCTTSBCTTSSSTTCCSCCEETTTTEEC
T ss_pred cEECCCCCCCcccEECCCCCcCCCCCCCCCCCCCeeccccCccc
Confidence 356877 8755433 23567898 99999999998553
No 132
>1kil_E Complexin I snare-complex binding region; helix bound to four helix bundle, membrane protein; 2.30A {Rattus norvegicus} SCOP: h.1.15.1
Probab=29.58 E-value=1e+02 Score=19.02 Aligned_cols=27 Identities=26% Similarity=0.311 Sum_probs=15.8
Q ss_pred hHHHHHHHHHH---HHHHHHHHHHHHHHHH
Q psy5308 40 QKQEEERELEI---MRRKQDEVHLLEQSIR 66 (137)
Q Consensus 40 ~~~le~~E~~R---irkL~~el~~lk~~~~ 66 (137)
++.+++.|++| -+++..+-+.|++.|+
T Consensus 15 ~eAlreaEe~Rk~Kh~kmE~eRE~mRq~IR 44 (49)
T 1kil_E 15 QEALRQAEEERKAKYAKMEAEREVMRQGIR 44 (49)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444444 3456666778888774
No 133
>2xb1_A Pygopus homolog 2, B-cell CLL/lymphoma 9-like Pro; fusion protein, signal transduction, transcription, metal BI WNT proteins; 1.90A {Homo sapiens}
Probab=29.57 E-value=7.4 Score=26.98 Aligned_cols=52 Identities=15% Similarity=0.255 Sum_probs=34.6
Q ss_pred cccccccccccccCCCCCCCc-cccccccccCCceee-----c--CCCCcceEEeeeccCC
Q psy5308 80 DATCHICLKTKFADGVGHMCN-YCNIRCCARCGGKVT-----L--RSNKVSVEVTTRGHNN 132 (137)
Q Consensus 80 ~~~C~~C~ktkf~~g~G~~C~-~C~~rvC~rCg~~v~-----l--r~n~~~W~Ctvc~~~~ 132 (137)
...|++|+++-..++..-.|. .|+.-|=..|-+-.. + .++ ..|.|..|....
T Consensus 3 ~~~C~iC~~p~~~~~~mi~Cdd~C~~WfH~~CVglt~~~~~~i~~~~~-~~~~Cp~C~~~~ 62 (105)
T 2xb1_A 3 VYPCGACRSEVNDDQDAILCEASCQKWFHRECTGMTESAYGLLTTEAS-AVWACDLCLKTK 62 (105)
T ss_dssp CCBCTTTCSBCCTTSCEEECTTTTCCEEEGGGTTCCHHHHHHHHHCTT-EEECCHHHHHTT
T ss_pred cCCCCCCCCccCCCCCEEEecCCcccccccccCCcCHHHHHhhccCCC-CCEECccccCcC
Confidence 357999998854455666787 898877788843321 0 122 479999987544
No 134
>1v87_A Deltex protein 2; ring-H2 domain, zinc-binding domain, notch signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.44.1.1
Probab=29.52 E-value=12 Score=24.91 Aligned_cols=52 Identities=17% Similarity=0.220 Sum_probs=27.5
Q ss_pred cccccccccccccCCCC-------------C--CCccccccccccCCceeecCCC-CcceEEeeeccCC
Q psy5308 80 DATCHICLKTKFADGVG-------------H--MCNYCNIRCCARCGGKVTLRSN-KVSVEVTTRGHNN 132 (137)
Q Consensus 80 ~~~C~~C~ktkf~~g~G-------------~--~C~~C~~rvC~rCg~~v~lr~n-~~~W~Ctvc~~~~ 132 (137)
+..|.||...+ .++.+ . .-..|.|.||..|-.......+ ...-.|-+|-...
T Consensus 25 ~~~C~ICl~~~-~~~~~~~~~~~~~~~~~~~~~~~~~C~H~Fh~~Ci~~wl~~~~~~~~~~CP~CR~~~ 92 (114)
T 1v87_A 25 EEDCIICMEKL-AVASGYSDMTDSKALGPMVVGRLTKCSHAFHLLCLLAMYCNGNKDGSLQCPSCKTIY 92 (114)
T ss_dssp SCEETTTTEET-TSCCSTTTTCCCSSSCSSCCEEESSSCCEECHHHHHHHHHHTCCSSCCBCTTTCCBS
T ss_pred CCcCccCChhh-cCcccccccccccccCcccceecCCCCCcccHHHHHHHHHcccCCCCCcCCCCCCcc
Confidence 46899998664 22110 0 0345888999999543311100 1134577765443
No 135
>1e29_A Cytochrome C549; electron transport, PSII associated cytochrome, low potential, BIS_histidinyl, PSII modulator; HET: HEC; 1.21A {Synechocystis SP} SCOP: a.3.1.1
Probab=29.30 E-value=67 Score=22.18 Aligned_cols=24 Identities=13% Similarity=0.212 Sum_probs=18.8
Q ss_pred CCCCCCCCCHHHHHHHHHHHHhhH
Q psy5308 18 IIPDLSHLTLEERQIIESVMMRQK 41 (137)
Q Consensus 18 ~~~dLS~LteeEr~~Il~VL~R~~ 41 (137)
.||.+..||++|.+.|...|..+.
T Consensus 100 ~mp~~~~Lsd~ei~~laaYl~~~~ 123 (135)
T 1e29_A 100 IYPEMRNYTEDDIFDVAGYTLIAP 123 (135)
T ss_dssp TCGGGTTCCHHHHHHHHHHHHHHH
T ss_pred cccccccCCHHHHHHHHHHHHhcc
Confidence 466667899999999999886443
No 136
>2akl_A PHNA-like protein PA0128; two domains, Zn binding protein, beta-strand protein, structural genomics, PSI; NMR {Pseudomonas aeruginosa PAO1} SCOP: b.34.11.2 g.41.3.5
Probab=29.21 E-value=14 Score=27.51 Aligned_cols=10 Identities=20% Similarity=0.640 Sum_probs=5.6
Q ss_pred cccccCCcee
Q psy5308 105 RCCARCGGKV 114 (137)
Q Consensus 105 rvC~rCg~~v 114 (137)
.||..|+...
T Consensus 45 ~vCPeC~hEW 54 (138)
T 2akl_A 45 LVCPECAHEW 54 (138)
T ss_dssp EEETTTTEEE
T ss_pred EECCcccccc
Confidence 5556665554
No 137
>1x4v_A Hypothetical protein LOC130617; ZF-AN1 domain, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=29.19 E-value=19 Score=23.13 Aligned_cols=27 Identities=19% Similarity=0.669 Sum_probs=21.0
Q ss_pred cccccc--cccccccCCCCCCCcccccccccc
Q psy5308 80 DATCHI--CLKTKFADGVGHMCNYCNIRCCAR 109 (137)
Q Consensus 80 ~~~C~~--C~ktkf~~g~G~~C~~C~~rvC~r 109 (137)
.+.|.. |.+..| .+..|.+|...||.+
T Consensus 12 ~~~Cs~~~Ck~~~l---l~f~C~~C~~~FC~~ 40 (63)
T 1x4v_A 12 TNKCERAGCRQREM---MKLTCERCSRNFCIK 40 (63)
T ss_dssp CCCCCSTTCCCCCS---SCCBCSSSCCBCCHH
T ss_pred CCCCCccCCCCCCc---cceECCCCCcccCcc
Confidence 467888 986533 466999999999984
No 138
>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=29.18 E-value=16 Score=22.01 Aligned_cols=44 Identities=18% Similarity=0.354 Sum_probs=25.7
Q ss_pred cccccccccccccCCCCCCCccccccccccCCceeecCCCCcceEEeeecc
Q psy5308 80 DATCHICLKTKFADGVGHMCNYCNIRCCARCGGKVTLRSNKVSVEVTTRGH 130 (137)
Q Consensus 80 ~~~C~~C~ktkf~~g~G~~C~~C~~rvC~rCg~~v~lr~n~~~W~Ctvc~~ 130 (137)
...|.||... +.+..- ..|.|.+|..|-.... . .....|.+|..
T Consensus 15 ~~~C~IC~~~-~~~p~~---~~CgH~fC~~Ci~~~~-~--~~~~~CP~Cr~ 58 (66)
T 2ecy_A 15 KYKCEKCHLV-LCSPKQ---TECGHRFCESCMAALL-S--SSSPKCTACQE 58 (66)
T ss_dssp CEECTTTCCE-ESSCCC---CSSSCCCCHHHHHHHH-T--TSSCCCTTTCC
T ss_pred CCCCCCCChH-hcCeeE---CCCCCHHHHHHHHHHH-H--hCcCCCCCCCc
Confidence 5789999855 333221 3688888888854432 1 11345666543
No 139
>1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=29.18 E-value=26 Score=23.63 Aligned_cols=29 Identities=21% Similarity=0.482 Sum_probs=17.3
Q ss_pred cccccccccccccCCCCCCCccccccccccCC
Q psy5308 80 DATCHICLKTKFADGVGHMCNYCNIRCCARCG 111 (137)
Q Consensus 80 ~~~C~~C~ktkf~~g~G~~C~~C~~rvC~rCg 111 (137)
..+|.||... |.+.. .-..|.|.||..|-
T Consensus 22 ~~~C~IC~~~-~~~pv--~~~~CgH~fC~~Ci 50 (117)
T 1jm7_B 22 LLRCSRCTNI-LREPV--CLGGCEHIFCSNCV 50 (117)
T ss_dssp TTSCSSSCSC-CSSCB--CCCSSSCCBCTTTG
T ss_pred CCCCCCCChH-hhCcc--EeCCCCCHHHHHHH
Confidence 5789999855 33221 11146677777773
No 140
>1f1c_A Cytochrome C549; dimeric cytochrome, electron transport; HET: HEM; 2.30A {Arthrospira maxima} SCOP: a.3.1.1
Probab=28.97 E-value=58 Score=21.44 Aligned_cols=24 Identities=13% Similarity=0.344 Sum_probs=18.6
Q ss_pred CCCCCCCCCHHHHHHHHHHHHhhH
Q psy5308 18 IIPDLSHLTLEERQIIESVMMRQK 41 (137)
Q Consensus 18 ~~~dLS~LteeEr~~Il~VL~R~~ 41 (137)
.||.+..||++|...|...|....
T Consensus 98 ~Mp~~~~Ls~~ei~~l~~Yl~~l~ 121 (129)
T 1f1c_A 98 IFPKMRNISEDDLYNVAGYILLQP 121 (129)
T ss_dssp TCGGGSSCCHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCHHHHHHHHHHHHHcC
Confidence 455557899999999999886543
No 141
>2vpb_A Hpygo1, pygopus homolog 1; gene regulation, WNT signaling pathway, WNT signaling complex, chromosomal rearrangement, signaling protein; 1.59A {Homo sapiens} PDB: 2vpd_A 2yyr_A* 2dx8_A* 2vp7_A 2vpg_A* 2vpe_A*
Probab=28.86 E-value=4.3 Score=25.99 Aligned_cols=49 Identities=18% Similarity=0.267 Sum_probs=32.4
Q ss_pred cccccccccccccCCCCCCCc-cccccccccCCceeec-------CCCCcceEEeeec
Q psy5308 80 DATCHICLKTKFADGVGHMCN-YCNIRCCARCGGKVTL-------RSNKVSVEVTTRG 129 (137)
Q Consensus 80 ~~~C~~C~ktkf~~g~G~~C~-~C~~rvC~rCg~~v~l-------r~n~~~W~Ctvc~ 129 (137)
...|++|+++-..+.....|. .|+.-|=..|-+-... .+ ...|.|..|.
T Consensus 8 ~~~C~~C~~p~~~~~~mI~CD~~C~~WfH~~Cvglt~~~~~~l~~e~-~~~w~C~~C~ 64 (65)
T 2vpb_A 8 VYPCGICTNEVNDDQDAILCEASCQKWFHRICTGMTETAYGLLTAEA-SAVWGCDTCM 64 (65)
T ss_dssp -CBCTTTCSBCCTTSCEEEBTTTTCCEEEHHHHTCCHHHHHHHHHCT-TEEECCHHHH
T ss_pred cCcCccCCCccCCCCCeEecccCccccCchhccCCCHHHHHHhhccC-CCcEECcCcc
Confidence 578999998865555667888 8987777778433210 12 2389998763
No 142
>4gne_A Histone-lysine N-methyltransferase NSD3; zinc finger, transcription, nuclear protein, transf nuclear protein complex; 1.47A {Homo sapiens} PDB: 4gnd_A 4gnf_A 4gng_A*
Probab=28.80 E-value=21 Score=25.04 Aligned_cols=41 Identities=15% Similarity=0.329 Sum_probs=26.8
Q ss_pred ccccccccccccCCCCCCCccccccccccCCceeecCCCCcceEEe
Q psy5308 81 ATCHICLKTKFADGVGHMCNYCNIRCCARCGGKVTLRSNKVSVEVT 126 (137)
Q Consensus 81 ~~C~~C~ktkf~~g~G~~C~~C~~rvC~rCg~~v~lr~n~~~W~Ct 126 (137)
-.|.+|.++. ...|.-|-.-+|..|-...-.+++...|+|.
T Consensus 59 c~C~~C~k~~-----~~~C~~Cp~sfC~~c~~g~l~~~~~~~~~c~ 99 (107)
T 4gne_A 59 HQCDECSSAA-----VSFCEFCPHSFCKDHEKGALVPSALEGRLCC 99 (107)
T ss_dssp GBCTTTCSBC-----CEECSSSSCEECTTTCTTSCEECTTTTCEEC
T ss_pred CCCCcCCCCC-----CcCcCCCCcchhhhccCCcceecCCCCceec
Confidence 3466666553 2568888888888886554334445679874
No 143
>1m2v_B SEC24, protein transport protein SEC24, SEC24P, SEC24 protein, abnormal nuclear; zinc-finger, beta barrel, VWA domain, gelsolin domain,; 2.75A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1
Probab=28.78 E-value=14 Score=34.66 Aligned_cols=32 Identities=9% Similarity=-0.072 Sum_probs=19.3
Q ss_pred CCCccccccccccCCceeecCCCCcceEEeeeccCC
Q psy5308 97 HMCNYCNIRCCARCGGKVTLRSNKVSVEVTTRGHNN 132 (137)
Q Consensus 97 ~~C~~C~~rvC~rCg~~v~lr~n~~~W~Ctvc~~~~ 132 (137)
..|..|+-.+..-|... . ++..|+|.+|.+.|
T Consensus 229 vRC~rCrAYiNPf~~~~---~-~g~~W~CnfC~~~N 260 (926)
T 1m2v_B 229 VRCRRCRSYMNPFVTFI---E-QGRRWRCNFCRLAN 260 (926)
T ss_dssp CBCSSSCCBCCTTCEEE---T-TTTEEECTTTCCEE
T ss_pred CccCCccCEecCceEEe---C-CCCEEEccCCCCCC
Confidence 34555555555555321 2 23589999998765
No 144
>3kdw_A Putative sugar binding protein; structural genomics, joint C structural genomics, JCSG, protein structure initiative; HET: MSE; 1.70A {Bacteroides vulgatus atcc 8482} PDB: 3g6i_A*
Probab=28.75 E-value=65 Score=25.60 Aligned_cols=42 Identities=17% Similarity=0.174 Sum_probs=24.1
Q ss_pred CCCCHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5308 23 SHLTLEERQIIESVMMRQKQEEERELEIMRRKQDEVHLLEQSI 65 (137)
Q Consensus 23 S~LteeEr~~Il~VL~R~~~le~~E~~RirkL~~el~~lk~~~ 65 (137)
..||++|+..|+.-|.-+++ ..++.+=..+.+.=|...+-.|
T Consensus 151 P~Lteeek~~I~~~L~eARE-~AmD~~~sk~kha~F~kYKgri 192 (221)
T 3kdw_A 151 PTLKEEEKAQIMAWLVEARE-FAMDAENSNKKHAAFGKYKGRI 192 (221)
T ss_dssp TTCCHHHHHHHHHHHHHHHH-HHTTSSSHHHHHHHHHHHHHHH
T ss_pred CcccHHHHHHHHHHHHHHHH-HhccccchHHHHHHHHHHHHHH
Confidence 46899999999998854443 2233333334444444444433
No 145
>3tso_C RAB11 family-interacting protein 2; RAS GTPase fold (RAB25), vesicle trafficking, endosome, PROT transport; HET: GNP; 1.80A {Homo sapiens} PDB: 2k6s_A
Probab=28.73 E-value=1.1e+02 Score=20.38 Aligned_cols=38 Identities=18% Similarity=0.350 Sum_probs=27.2
Q ss_pred CCCCCCHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Q psy5308 21 DLSHLTLEERQIIESVMMRQKQEEERELEIMRRKQDEVHLL 61 (137)
Q Consensus 21 dLS~LteeEr~~Il~VL~R~~~le~~E~~RirkL~~el~~l 61 (137)
-.++||-+| .|.-|++++.++..++ .+|+.|.+=+++|
T Consensus 10 ~y~~ltreE--Li~l~lk~~~~l~~k~-~~v~eLEdYID~L 47 (75)
T 3tso_C 10 GYRSLTYEE--VLQELVKHKELLRRKD-THIRELEDYIDNL 47 (75)
T ss_dssp --CCCCHHH--HHHHHHHHHHHHHHHH-HHHHHHHHHHHHH
T ss_pred HHhcCCHHH--HHHHHHHHHHHHHHHH-HHHHHHHHHHHHH
Confidence 367888776 5777888888877765 6778888777766
No 146
>2zkr_2 60S ribosomal protein L37E; protein-RNA complex, 60S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris} SCOP: i.1.1.1
Probab=28.50 E-value=20 Score=25.17 Aligned_cols=34 Identities=24% Similarity=0.587 Sum_probs=22.2
Q ss_pred cccccccccccccCCCCCCCccccccccccCCceeecCCCCcce
Q psy5308 80 DATCHICLKTKFADGVGHMCNYCNIRCCARCGGKVTLRSNKVSV 123 (137)
Q Consensus 80 ~~~C~~C~ktkf~~g~G~~C~~C~~rvC~rCg~~v~lr~n~~~W 123 (137)
...|.+|+..-| |+ ++..|+.||... -+..+..|
T Consensus 16 H~lCrRCG~~sf-----H~----qK~~CgkCGYpa-~k~R~ynW 49 (97)
T 2zkr_2 16 HTLCRRCGSKAY-----HL----QKSTCGKCGYPA-KRKRKYNW 49 (97)
T ss_dssp EECCTTTCSSCE-----ET----TSCCBTTTCTTT-SSCCCCSS
T ss_pred CCcCCCCCCccC-----cC----ccccCcccCCch-HhccCcch
Confidence 467999987656 22 678999999542 22224555
No 147
>1tjl_A DNAK suppressor protein; DKSA, transcription factor, RNA polymerase, stringent response, PPGPP, riken structural genomics/proteomics initiative; 2.00A {Escherichia coli} SCOP: a.2.14.1 g.39.1.13 PDB: 3h3p_S
Probab=28.38 E-value=1.4e+02 Score=21.85 Aligned_cols=26 Identities=19% Similarity=0.298 Sum_probs=19.2
Q ss_pred ccccccccccc-----ccCCCCCCCcccccc
Q psy5308 80 DATCHICLKTK-----FADGVGHMCNYCNIR 105 (137)
Q Consensus 80 ~~~C~~C~ktk-----f~~g~G~~C~~C~~r 105 (137)
--.|..|++.. -+......|..|+..
T Consensus 111 yg~C~~Cg~~Ip~~Rl~a~P~a~~Ci~Cq~~ 141 (151)
T 1tjl_A 111 FGYCESCGVEIGIRRLEARPTADLCIDCKTL 141 (151)
T ss_dssp CSBCSSSSCBCCHHHHHHCTTCCSCHHHHHH
T ss_pred CceeCCCCCcchHHHHhcCCCcchhHHHHHH
Confidence 36799999873 345677889999853
No 148
>1f1f_A Cytochrome C6; heme, protein structure, cyanobacteria, photosynthesis, electron transport; HET: HEM; 2.70A {Arthrospira maxima} SCOP: a.3.1.1 PDB: 1kib_A*
Probab=28.17 E-value=73 Score=19.30 Aligned_cols=22 Identities=14% Similarity=0.297 Sum_probs=16.4
Q ss_pred CCCC-CCCCHHHHHHHHHHHHhh
Q psy5308 19 IPDL-SHLTLEERQIIESVMMRQ 40 (137)
Q Consensus 19 ~~dL-S~LteeEr~~Il~VL~R~ 40 (137)
||.+ ..||++|...|...|...
T Consensus 62 Mp~~~~~ls~~ei~~l~~yl~~~ 84 (89)
T 1f1f_A 62 MPGFNGRLSPLQIEDVAAYVVDQ 84 (89)
T ss_dssp BCCCTTTSCHHHHHHHHHHHHHH
T ss_pred CCccccCCCHHHHHHHHHHHHHH
Confidence 4444 369999999999988543
No 149
>2aj6_A Hypothetical protein MW0638; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL; 1.63A {Staphylococcus aureus subsp} SCOP: d.108.1.1
Probab=28.16 E-value=33 Score=22.88 Aligned_cols=32 Identities=9% Similarity=0.018 Sum_probs=19.5
Q ss_pred ccccCCCCCCCCCCCCCCCCHHHHHHHHHHHH
Q psy5308 7 MVTSMAQTNADIIPDLSHLTLEERQIIESVMM 38 (137)
Q Consensus 7 ~~~~~~~~~~~~~~dLS~LteeEr~~Il~VL~ 38 (137)
|.+|+++++.+..+-+..+|++.-+.|.+++.
T Consensus 1 ~~~~~~~~~~~~~~~ir~~~~~D~~~i~~l~~ 32 (159)
T 2aj6_A 1 MGSDKIHHHHHHMRTLNKDEHNYIKQIANIHE 32 (159)
T ss_dssp ----------CCEEECCTTCHHHHHHHHHHHH
T ss_pred CCccccchhhhhhhhcCCCchhhHHHHHHHHH
Confidence 44566677777888899999999999999864
No 150
>1we9_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=28.11 E-value=13 Score=22.98 Aligned_cols=54 Identities=15% Similarity=0.332 Sum_probs=34.1
Q ss_pred cccccccccccccCCCCCCCccccccccccCCceeecCC-CCcceEEeeeccCCC
Q psy5308 80 DATCHICLKTKFADGVGHMCNYCNIRCCARCGGKVTLRS-NKVSVEVTTRGHNNN 133 (137)
Q Consensus 80 ~~~C~~C~ktkf~~g~G~~C~~C~~rvC~rCg~~v~lr~-n~~~W~Ctvc~~~~~ 133 (137)
...|++|+++--.++.-..|..|..-+=.+|-+-..... .-..|.|..|....+
T Consensus 6 ~~~C~~C~~~~~~~~~mI~Cd~C~~WfH~~Cvgl~~~~~~~~~~~~C~~C~~k~~ 60 (64)
T 1we9_A 6 SGQCGACGESYAADEFWICCDLCEMWFHGKCVKITPARAEHIKQYKCPSCSNKSG 60 (64)
T ss_dssp CCCCSSSCCCCCSSSCEEECSSSCCEEETTTTTCCTTGGGGCSSCCCHHHHTTTC
T ss_pred CCCCCCCCCccCCCCCEEEccCCCCCCCccccCcChhHhcCCCcEECCCCcCcCC
Confidence 577999997743344566788888776677744321110 013699999866544
No 151
>1sfc_A VAMP 2, protein (synaptobrevin 2); membrane fusion protein complex, transport protein; 2.40A {Rattus norvegicus} SCOP: h.1.15.1
Probab=28.07 E-value=1.4e+02 Score=20.13 Aligned_cols=34 Identities=21% Similarity=0.207 Sum_probs=19.6
Q ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5308 30 RQIIESVMMRQKQEEERELEIMRRKQDEVHLLEQS 64 (137)
Q Consensus 30 r~~Il~VL~R~~~le~~E~~RirkL~~el~~lk~~ 64 (137)
++-|-.||+|.+.|+..+++- ..|...-..++++
T Consensus 47 ~~NI~kvLeRGEkLd~L~dks-e~L~~~S~~F~k~ 80 (96)
T 1sfc_A 47 RVNVDKVLERDQKLSELDDRA-DALQAGASQFETS 80 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhHHHHHHHHH-HHHHHHHHHHHHH
Confidence 445677888888877776432 3344444444443
No 152
>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens}
Probab=27.91 E-value=9.8 Score=24.89 Aligned_cols=29 Identities=24% Similarity=0.573 Sum_probs=16.4
Q ss_pred cccccccccccccCCCCCCCccccccccccCC
Q psy5308 80 DATCHICLKTKFADGVGHMCNYCNIRCCARCG 111 (137)
Q Consensus 80 ~~~C~~C~ktkf~~g~G~~C~~C~~rvC~rCg 111 (137)
...|.||... |.+. .....|.|.||..|-
T Consensus 22 ~~~C~IC~~~-~~~p--~~~~~CgH~fC~~Ci 50 (99)
T 2y43_A 22 LLRCGICFEY-FNIA--MIIPQCSHNYCSLCI 50 (99)
T ss_dssp HTBCTTTCSB-CSSE--EECTTTCCEEEHHHH
T ss_pred CCCcccCChh-hCCc--CEECCCCCHhhHHHH
Confidence 4679999855 3321 112345666666664
No 153
>2aqe_A Transcriptional adaptor 2, ADA2 alpha; helix-turn-helix; NMR {Mus musculus} SCOP: a.4.1.18 PDB: 2aqf_A
Probab=27.65 E-value=54 Score=22.03 Aligned_cols=18 Identities=17% Similarity=0.315 Sum_probs=15.2
Q ss_pred CCCCCCCCCCCHHHHHHH
Q psy5308 16 ADIIPDLSHLTLEERQII 33 (137)
Q Consensus 16 ~~~~~dLS~LteeEr~~I 33 (137)
...+||+..||++|++.-
T Consensus 14 i~~~p~~~lLs~~E~~LC 31 (90)
T 2aqe_A 14 LTGLPGTEKLNEKEKELC 31 (90)
T ss_dssp SSSSSSTTTSCHHHHHHH
T ss_pred ccCCCCchhcCHHHHHHH
Confidence 367999999999999864
No 154
>2yt5_A Metal-response element-binding transcription factor 2; zinc-regulated factor 1, ZIRF1, metal-response element DNA-binding protein M96; NMR {Mus musculus}
Probab=27.03 E-value=12 Score=23.20 Aligned_cols=51 Identities=16% Similarity=0.251 Sum_probs=32.2
Q ss_pred ccccccccccc-ccCCCCCCCccccccccccCCce-eec---CCCCcceEEeeeccC
Q psy5308 80 DATCHICLKTK-FADGVGHMCNYCNIRCCARCGGK-VTL---RSNKVSVEVTTRGHN 131 (137)
Q Consensus 80 ~~~C~~C~ktk-f~~g~G~~C~~C~~rvC~rCg~~-v~l---r~n~~~W~Ctvc~~~ 131 (137)
+..|.+|+..- ..++.-..|..|..-+=..|=+. +.. .+.+ .|.|..|...
T Consensus 6 ~~~C~vC~~~~~~~~~~ll~Cd~C~~~~H~~C~~p~l~~~~~~p~~-~W~C~~C~~~ 61 (66)
T 2yt5_A 6 SGVCTICQEEYSEAPNEMVICDKCGQGYHQLCHTPHIDSSVIDSDE-KWLCRQCVFA 61 (66)
T ss_dssp CCCBSSSCCCCCBTTBCEEECSSSCCEEETTTSSSCCCHHHHHSSC-CCCCHHHHHT
T ss_pred CCCCCCCCCCCCCCCCCEEECCCCChHHHhhhCCCcccccccCCCC-CEECCCCcCc
Confidence 57899999652 33456667888877766677443 111 1323 6999997654
No 155
>1c75_A Cytochrome C-553; heme, bacillus pasteurii, AB initio, ATOM resolution, electron transport; HET: HEM; 0.97A {Sporosarcina pasteurii} SCOP: a.3.1.1 PDB: 1b7v_A* 1k3g_A* 1k3h_A* 1n9c_A*
Probab=26.93 E-value=36 Score=20.28 Aligned_cols=20 Identities=10% Similarity=0.184 Sum_probs=15.2
Q ss_pred CCCCCCCCHHHHHHHHHHHHh
Q psy5308 19 IPDLSHLTLEERQIIESVMMR 39 (137)
Q Consensus 19 ~~dLS~LteeEr~~Il~VL~R 39 (137)
||. ..||++|.+.|...|..
T Consensus 50 Mp~-~~ls~~ei~~l~~yl~~ 69 (71)
T 1c75_A 50 MPG-GIAKGAEAEAVAAWLAE 69 (71)
T ss_dssp BCS-CSSCHHHHHHHHHHHHT
T ss_pred CCC-CCCCHHHHHHHHHHHHh
Confidence 444 67999999999887753
No 156
>3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing, mRNA splicing; NMR {Homo sapiens}
Probab=26.88 E-value=11 Score=24.22 Aligned_cols=29 Identities=28% Similarity=0.690 Sum_probs=16.6
Q ss_pred cccccccccccccCCCCCCCccccccccccCC
Q psy5308 80 DATCHICLKTKFADGVGHMCNYCNIRCCARCG 111 (137)
Q Consensus 80 ~~~C~~C~ktkf~~g~G~~C~~C~~rvC~rCg 111 (137)
+-+|.||... |.+.. .-..|.|.||..|-
T Consensus 13 ~~~C~IC~~~-~~~p~--~~~~CgH~fC~~Ci 41 (92)
T 3ztg_A 13 ELLCLICKDI-MTDAV--VIPCCGNSYCDECI 41 (92)
T ss_dssp TTEETTTTEE-CSSCE--ECTTTCCEECHHHH
T ss_pred CCCCCCCChh-hcCce--ECCCCCCHHHHHHH
Confidence 5789999954 33321 22225666666663
No 157
>2jun_A Midline-1; B-BOX, TRIM, ring finger, alternative splicing, coiled coil, cytoplasm, cytoskeleton, disease mutation, ligase, metal-binding; NMR {Homo sapiens}
Probab=26.74 E-value=13 Score=24.43 Aligned_cols=32 Identities=19% Similarity=0.580 Sum_probs=23.6
Q ss_pred cccccccccccccCCCCCCCccccccccccCCc
Q psy5308 80 DATCHICLKTKFADGVGHMCNYCNIRCCARCGG 112 (137)
Q Consensus 80 ~~~C~~C~ktkf~~g~G~~C~~C~~rvC~rCg~ 112 (137)
+.+|.+|....+. .....|..|.+.+|..|-.
T Consensus 3 e~~C~~C~~~~~~-~av~~C~~C~~~~C~~Cl~ 34 (101)
T 2jun_A 3 KVLCQFCDQDPAQ-DAVKTCVTCEVSYCDECLK 34 (101)
T ss_dssp CCBCTTCCSSSCC-BCCEEETTTTEEECHHHHH
T ss_pred CCCCcCCCCCCCC-CceEECCcCChHHhHHHCH
Confidence 4689999854333 2445799999999999954
No 158
>3a7m_A Flagellar protein FLIT; UP-DOWN helix bundle, bacterial flagellum biogenesis, chaper cytoplasm, repressor, transcription; 3.20A {Salmonella typhimurium}
Probab=26.74 E-value=73 Score=22.54 Aligned_cols=37 Identities=3% Similarity=-0.129 Sum_probs=28.6
Q ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Q psy5308 27 LEERQIIESVMMRQKQEEERELEIMRRKQDEVHLLEQ 63 (137)
Q Consensus 27 eeEr~~Il~VL~R~~~le~~E~~RirkL~~el~~lk~ 63 (137)
+.-+++|-.+|..|.+.+..=+.|+.+|...+...++
T Consensus 62 ~~~~~lL~~IL~nDaeIr~Ll~~rl~~L~~li~~~~r 98 (122)
T 3a7m_A 62 DMVAGYIKQTLDNEQLLKGLLQQRLDELSSLIGQSTR 98 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHH
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 3456778888889999999988888888877765543
No 159
>1faq_A RAF-1; transferase, serine/threonine-protein kinase, proto- oncogene, zinc, ATP-binding, phorbol-ester binding; NMR {Homo sapiens} SCOP: g.49.1.1 PDB: 1far_A
Probab=26.57 E-value=16 Score=21.44 Aligned_cols=32 Identities=34% Similarity=0.683 Sum_probs=25.0
Q ss_pred cccccccccccccCCCCCCCccccccccccCCcee
Q psy5308 80 DATCHICLKTKFADGVGHMCNYCNIRCCARCGGKV 114 (137)
Q Consensus 80 ~~~C~~C~ktkf~~g~G~~C~~C~~rvC~rCg~~v 114 (137)
...|..|++.+. -|-.|.+|+..+=.+|...+
T Consensus 14 pt~C~~C~~~l~---qG~~C~~C~~~~H~~C~~~v 45 (52)
T 1faq_A 14 LAFCDICQKFLL---NGFRCQTCGYKFHEHCSTKV 45 (52)
T ss_dssp CEECTTSSSEEC---SEEECTTTTCCBCSTTSSSS
T ss_pred CcCCCCcccccc---cCCEeCCCCCeEChhHHhhC
Confidence 577999986544 68899999988888886554
No 160
>3iz5_m 60S ribosomal protein L43 (L37AE); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 3izr_m 1ysh_D 2zkr_z
Probab=26.55 E-value=13 Score=25.78 Aligned_cols=11 Identities=27% Similarity=0.507 Sum_probs=8.6
Q ss_pred ccccccccccc
Q psy5308 80 DATCHICLKTK 90 (137)
Q Consensus 80 ~~~C~~C~ktk 90 (137)
..+|..|+++.
T Consensus 36 ky~CpfCgk~~ 46 (92)
T 3iz5_m 36 KYFCEFCGKFA 46 (92)
T ss_dssp CBCCTTTCSSC
T ss_pred cccCcccCCCe
Confidence 46799998875
No 161
>1cyi_A Cytochrome C6, cytochrome C553; photosynthesis, electron transport protein (cytochrome); HET: HEM; 1.90A {Chlamydomonas reinhardtii} SCOP: a.3.1.1 PDB: 1cyj_A*
Probab=26.44 E-value=81 Score=19.25 Aligned_cols=23 Identities=26% Similarity=0.436 Sum_probs=17.1
Q ss_pred CCCC-CCCCHHHHHHHHHHHHhhH
Q psy5308 19 IPDL-SHLTLEERQIIESVMMRQK 41 (137)
Q Consensus 19 ~~dL-S~LteeEr~~Il~VL~R~~ 41 (137)
||.+ ..||++|...|...|....
T Consensus 60 Mp~~~~~ls~~ei~~l~~yl~~~~ 83 (90)
T 1cyi_A 60 MPAWADRLSEEEIQAVAEYVFKQA 83 (90)
T ss_dssp BCCCTTTSCHHHHHHHHHHHHHHH
T ss_pred CCcccccCCHHHHHHHHHHHHhcc
Confidence 4444 3699999999999886543
No 162
>3n8e_A Stress-70 protein, mitochondrial; beta-sandwich, helix, substrate binding domain, structural G consortium, SGC, chaperone; 2.80A {Homo sapiens}
Probab=26.37 E-value=1.8e+02 Score=21.55 Aligned_cols=20 Identities=5% Similarity=0.042 Sum_probs=14.1
Q ss_pred CCCCHHHHHHHHHHHHhhHH
Q psy5308 23 SHLTLEERQIIESVMMRQKQ 42 (137)
Q Consensus 23 S~LteeEr~~Il~VL~R~~~ 42 (137)
+.|+++|.+.+.+-.+..++
T Consensus 136 ~~Ls~eei~~mi~~a~~~~~ 155 (182)
T 3n8e_A 136 GGLSKDDIENMVKNAEKYAE 155 (182)
T ss_dssp CCCCHHHHHHHHHHHHHSHH
T ss_pred ccCCHHHHHHHHHHHHHHHH
Confidence 78999998877765444443
No 163
>4b8x_A SCO5413, possible MARR-transcriptional regulator; winged helix motif; HET: CME; 1.25A {Streptomyces coelicolor}
Probab=26.29 E-value=46 Score=22.93 Aligned_cols=18 Identities=22% Similarity=0.126 Sum_probs=14.8
Q ss_pred CCCCCHHHHHHHHHHHHh
Q psy5308 22 LSHLTLEERQIIESVMMR 39 (137)
Q Consensus 22 LS~LteeEr~~Il~VL~R 39 (137)
|+.|+++|++.+..+|.+
T Consensus 119 l~~l~~ee~~~l~~~L~~ 136 (147)
T 4b8x_A 119 LGAYDAEECGEIFAMLRP 136 (147)
T ss_dssp TTTSCHHHHHHHHHHHHH
T ss_pred HhCCCHHHHHHHHHHHHH
Confidence 688999999988888744
No 164
>2y1n_A E3 ubiquitin-protein ligase; ligase-transferase complex, ubiquitin ring E3 ligase; HET: PTR; 2.00A {Homo sapiens} PDB: 2y1m_A* 4a4c_A* 4a4b_A* 1fbv_A* 3vgo_A 4a49_A* 2k4d_A 2ldr_A*
Probab=25.96 E-value=24 Score=30.05 Aligned_cols=35 Identities=26% Similarity=0.704 Sum_probs=20.3
Q ss_pred ccccccccccc---ccCCCCCC-Cccc-------cccccccCCcee
Q psy5308 80 DATCHICLKTK---FADGVGHM-CNYC-------NIRCCARCGGKV 114 (137)
Q Consensus 80 ~~~C~~C~ktk---f~~g~G~~-C~~C-------~~rvC~rCg~~v 114 (137)
...|.||.... ....+||. |..| ....|.-|+..+
T Consensus 332 ~~~C~ICle~~~~pv~lpCGH~FC~~Ci~~wl~~~~~~CP~CR~~i 377 (389)
T 2y1n_A 332 FQLCKICAENDKDVKIEPCGHLMCTSCLTSWQESEGQGCPFCRCEI 377 (389)
T ss_dssp SSBCTTTSSSBCCEEEETTCCEECHHHHHHHHHHTCSBCTTTCCBC
T ss_pred CCCCCccCcCCCCeEEeCCCChhhHHHHHHHHhcCCCCCCCCCCcc
Confidence 36899998552 22356664 5555 345566665544
No 165
>3m7k_A Restriction endonuclease PACI; HNH restriction endonuclease, beta-BETA-alpha-metal active S base-PAIR RARE cutter; HET: DNA; 1.92A {Pseudomonas alcaligenes} PDB: 3ldy_A*
Probab=25.92 E-value=19 Score=26.92 Aligned_cols=22 Identities=32% Similarity=0.788 Sum_probs=17.1
Q ss_pred ccccccccc----ccCCCCCCCcccc
Q psy5308 82 TCHICLKTK----FADGVGHMCNYCN 103 (137)
Q Consensus 82 ~C~~C~ktk----f~~g~G~~C~~C~ 103 (137)
.|++|++.+ |-.|+...|.+|-
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 28 (142)
T 3m7k_A 3 QCPRCQRNLAADEFYAGSSKMCKGCM 28 (142)
T ss_dssp ECTTTCCEECGGGBCSSSCCSBHHHH
T ss_pred cCchHhhccchhhhhccchhhccchh
Confidence 599999886 4447888888884
No 166
>1c6r_A Cytochrome C6; electron transport protein, reduced state, photosynthesis; HET: HEM; 1.90A {Scenedesmus obliquus} SCOP: a.3.1.1 PDB: 1c6o_A* 1a2s_A* 1ced_A* 1ctj_A*
Probab=25.92 E-value=84 Score=19.06 Aligned_cols=22 Identities=18% Similarity=0.289 Sum_probs=16.5
Q ss_pred CCCC-CCCCHHHHHHHHHHHHhh
Q psy5308 19 IPDL-SHLTLEERQIIESVMMRQ 40 (137)
Q Consensus 19 ~~dL-S~LteeEr~~Il~VL~R~ 40 (137)
||.+ ..||++|...|...|...
T Consensus 61 Mp~~~~~ls~~ei~~l~~yl~~~ 83 (89)
T 1c6r_A 61 MPAWSGTLDDDEIAAVAAYVYDQ 83 (89)
T ss_dssp BCCCTTTSCHHHHHHHHHHHHHH
T ss_pred CCCCCCcCCHHHHHHHHHHHHHH
Confidence 4444 369999999999988654
No 167
>3c5k_A HD6, histone deacetylase 6; HDAC6, zinc finger, actin-binding, chromatin regulator, cytoplasm, hydrolase, metal-binding, nucleus, phosphoprotein; 1.55A {Homo sapiens} PDB: 3gv4_A 3phd_A
Probab=25.83 E-value=21 Score=24.96 Aligned_cols=21 Identities=14% Similarity=0.224 Sum_probs=13.4
Q ss_pred cccccCCceeecCCCCcceEEeeeccC
Q psy5308 105 RCCARCGGKVTLRSNKVSVEVTTRGHN 131 (137)
Q Consensus 105 rvC~rCg~~v~lr~n~~~W~Ctvc~~~ 131 (137)
..|+.|+.. ...|+|-+|++-
T Consensus 25 ~~C~~C~~~------~~~W~CL~CG~v 45 (109)
T 3c5k_A 25 QPCGDCGTI------QENWVCLSCYQV 45 (109)
T ss_dssp CCCTTTCCC------SSEEEETTTCCE
T ss_pred CcCccccCC------CCeeeeeecCcc
Confidence 345566522 236999999875
No 168
>4aik_A Transcriptional regulator SLYA; transcription, transcription factor; 1.85A {Yersinia pseudotuberculosis} PDB: 4aih_A 4aij_A 3qpt_A* 3q5f_A*
Probab=25.80 E-value=47 Score=23.10 Aligned_cols=18 Identities=11% Similarity=0.361 Sum_probs=15.0
Q ss_pred CCCCCHHHHHHHHHHHHh
Q psy5308 22 LSHLTLEERQIIESVMMR 39 (137)
Q Consensus 22 LS~LteeEr~~Il~VL~R 39 (137)
++.|+++|++.+..+|.+
T Consensus 115 ~~~l~~ee~~~l~~~L~k 132 (151)
T 4aik_A 115 LGGISSDEIAVLSGLIDK 132 (151)
T ss_dssp TTTSCHHHHHHHHHHHHH
T ss_pred HhCCCHHHHHHHHHHHHH
Confidence 678999999999888743
No 169
>2vje_A E3 ubiquitin-protein ligase MDM2; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_A* 2hdp_A
Probab=25.73 E-value=11 Score=23.19 Aligned_cols=10 Identities=30% Similarity=0.614 Sum_probs=8.0
Q ss_pred cccccccccc
Q psy5308 80 DATCHICLKT 89 (137)
Q Consensus 80 ~~~C~~C~kt 89 (137)
+..|.+|...
T Consensus 8 ~~~C~IC~~~ 17 (64)
T 2vje_A 8 IEPCVICQGR 17 (64)
T ss_dssp GSCCTTTSSS
T ss_pred cCCCCcCCCC
Confidence 5789999854
No 170
>4a17_Y RPL37A, 60S ribosomal protein L32; eukaryotic ribosome, ribosome, eukaryotic initiation factor 60S, translation, large ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB: 4a1a_Y 4a1c_Y 4a1e_Y
Probab=25.53 E-value=17 Score=25.80 Aligned_cols=11 Identities=27% Similarity=0.561 Sum_probs=8.5
Q ss_pred ccccccccccc
Q psy5308 80 DATCHICLKTK 90 (137)
Q Consensus 80 ~~~C~~C~ktk 90 (137)
..+|..|.++.
T Consensus 36 ky~CpfCgk~~ 46 (103)
T 4a17_Y 36 KYGCPFCGKVA 46 (103)
T ss_dssp CEECTTTCCEE
T ss_pred CCCCCCCCCce
Confidence 46788888775
No 171
>1lko_A Rubrerythrin all-iron(II) form; reduced form, DIIRON, four-helix bundle, rubre like, electron transport; 1.63A {Desulfovibrio vulgaris} SCOP: a.25.1.1 g.41.5.1 PDB: 1dvb_A 1jyb_A 1b71_A 1lkm_A 1lkp_A 1qyb_A 1s2z_A 1s30_A 1ryt_A
Probab=25.38 E-value=1.1e+02 Score=22.77 Aligned_cols=9 Identities=22% Similarity=0.390 Sum_probs=5.8
Q ss_pred ccccccccc
Q psy5308 81 ATCHICLKT 89 (137)
Q Consensus 81 ~~C~~C~kt 89 (137)
-.|..|+-+
T Consensus 156 ~~C~~CG~~ 164 (191)
T 1lko_A 156 WRCRNCGYV 164 (191)
T ss_dssp EEETTTCCE
T ss_pred EEECCCCCE
Confidence 457788744
No 172
>1wev_A Riken cDNA 1110020M19; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, gene regulation; NMR {Mus musculus} SCOP: g.50.1.2
Probab=25.29 E-value=17 Score=24.24 Aligned_cols=52 Identities=10% Similarity=0.134 Sum_probs=32.4
Q ss_pred ccccccccccc-ccCCCCCCCccccccccccCCceeec-----CCCCcceEEeeeccCC
Q psy5308 80 DATCHICLKTK-FADGVGHMCNYCNIRCCARCGGKVTL-----RSNKVSVEVTTRGHNN 132 (137)
Q Consensus 80 ~~~C~~C~ktk-f~~g~G~~C~~C~~rvC~rCg~~v~l-----r~n~~~W~Ctvc~~~~ 132 (137)
...|.+|++.- ..++.-..|..|..-+=..|=..-.. .+.+ .|.|..|....
T Consensus 16 ~~~C~vC~~~~~~~~~~ll~CD~C~~~yH~~Cl~Ppl~~~~~~~p~g-~W~C~~C~~~~ 73 (88)
T 1wev_A 16 GLACVVCRQMTVASGNQLVECQECHNLYHQDCHKPQVTDKEVNDPRL-VWYCARCTRQM 73 (88)
T ss_dssp CCSCSSSCCCCCCTTCCEEECSSSCCEEETTTSSSCCCHHHHHCTTC-CCCCHHHHHHH
T ss_pred CCcCCCCCCCCCCCCCceEECCCCCCeEcCccCCCcccccccCCCCC-CeeCccccchh
Confidence 56899999663 23345567777777766677543111 2333 79999886543
No 173
>4hc9_A Trans-acting T-cell-specific transcription factor; zinc finger, GATA transcription factor, DNA bridging, transc DNA complex; HET: DNA; 1.60A {Homo sapiens} PDB: 4hc7_A* 4hca_A* 3dfx_A* 3dfv_D* 2gat_A* 3gat_A* 1gat_A* 1gau_A* 1gnf_A 1y0j_A 2l6y_A 2l6z_A
Probab=25.23 E-value=32 Score=24.33 Aligned_cols=24 Identities=38% Similarity=0.796 Sum_probs=15.1
Q ss_pred ccccccccccc--cc--CCCC-CCCcccc
Q psy5308 80 DATCHICLKTK--FA--DGVG-HMCNYCN 103 (137)
Q Consensus 80 ~~~C~~C~ktk--f~--~g~G-~~C~~C~ 103 (137)
.+.|..|+.+. ++ ++.| .+|..|-
T Consensus 5 ~~~C~~Cg~~~Tp~WRr~~~g~~lCnaCg 33 (115)
T 4hc9_A 5 GRECVNCGATSTPLWRRDGTGHYLCNACG 33 (115)
T ss_dssp -CCCTTTCCSCCSSCEECTTSCEECHHHH
T ss_pred CCCCCCCCCccCCcceECCCCCCcCcchh
Confidence 57899998443 33 3444 4888884
No 174
>2xzm_M RPS18E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_M
Probab=25.17 E-value=1.3e+02 Score=22.33 Aligned_cols=21 Identities=14% Similarity=0.109 Sum_probs=18.0
Q ss_pred CCCCCCCCHHHHHHHHHHHHh
Q psy5308 19 IPDLSHLTLEERQIIESVMMR 39 (137)
Q Consensus 19 ~~dLS~LteeEr~~Il~VL~R 39 (137)
..-...||++|-+.|..+|..
T Consensus 55 ~~r~~~Lt~~ei~~l~~~i~~ 75 (155)
T 2xzm_M 55 NARAGLLTEDQCNKITDLIAD 75 (155)
T ss_dssp SSCSSCSCHHHHHHHHHHHHS
T ss_pred ccccccCCHHHHHHHHHHHhC
Confidence 344789999999999999976
No 175
>3ivp_A Putative transposon-related DNA-binding protein; APC62618, clostridium diffic structural genomics, PSI-2, protein structure initiative; HET: PG4; 2.02A {Clostridium difficile}
Probab=25.11 E-value=94 Score=20.62 Aligned_cols=20 Identities=25% Similarity=0.192 Sum_probs=14.7
Q ss_pred CCCCCHHHHHHHHHHHHhhH
Q psy5308 22 LSHLTLEERQIIESVMMRQK 41 (137)
Q Consensus 22 LS~LteeEr~~Il~VL~R~~ 41 (137)
+..|++++++.|+.++..-.
T Consensus 91 ~~~l~~~~~~~i~~~i~~l~ 110 (126)
T 3ivp_A 91 IDNFTDADLVIMESVADGIV 110 (126)
T ss_dssp TTTCCHHHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHHH
Confidence 56788888888888874433
No 176
>2jne_A Hypothetical protein YFGJ; zinc fingers, two zinc, structural genomics, PSI-2, protein structure initiative; NMR {Escherichia coli} SCOP: g.41.18.1
Probab=25.04 E-value=14 Score=26.23 Aligned_cols=36 Identities=19% Similarity=0.467 Sum_probs=26.4
Q ss_pred ccccccccccccccCCCCCCCcccccc-----ccccCCcee
Q psy5308 79 LDATCHICLKTKFADGVGHMCNYCNIR-----CCARCGGKV 114 (137)
Q Consensus 79 ~~~~C~~C~ktkf~~g~G~~C~~C~~r-----vC~rCg~~v 114 (137)
.+..|..|+..+-++|....|..|+.. .|..|+-.+
T Consensus 31 M~~~CP~Cq~eL~~~g~~~hC~~C~~~f~~~a~CPdC~q~L 71 (101)
T 2jne_A 31 MELHCPQCQHVLDQDNGHARCRSCGEFIEMKALCPDCHQPL 71 (101)
T ss_dssp CCCBCSSSCSBEEEETTEEEETTTCCEEEEEEECTTTCSBC
T ss_pred ccccCccCCCcceecCCEEECccccchhhccccCcchhhHH
Confidence 358999999887666666668888765 477886543
No 177
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=25.00 E-value=1.4e+02 Score=25.00 Aligned_cols=12 Identities=25% Similarity=0.343 Sum_probs=6.1
Q ss_pred HHHHHHHHHHHH
Q psy5308 51 MRRKQDEVHLLE 62 (137)
Q Consensus 51 irkL~~el~~lk 62 (137)
.++|++++++|+
T Consensus 47 rr~l~n~~~elk 58 (403)
T 4etp_A 47 RRTLHNELQELR 58 (403)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHcC
Confidence 345555555554
No 178
>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B
Probab=24.94 E-value=10 Score=27.17 Aligned_cols=31 Identities=29% Similarity=0.597 Sum_probs=18.2
Q ss_pred cccccccccccccCCCCCCCccccccccccCCce
Q psy5308 80 DATCHICLKTKFADGVGHMCNYCNIRCCARCGGK 113 (137)
Q Consensus 80 ~~~C~~C~ktkf~~g~G~~C~~C~~rvC~rCg~~ 113 (137)
...|.||... |.+ ......|.|.||..|-..
T Consensus 54 ~~~C~IC~~~-~~~--p~~~~~CgH~fC~~Ci~~ 84 (165)
T 2ckl_B 54 ELMCPICLDM-LKN--TMTTKECLHRFCADCIIT 84 (165)
T ss_dssp HHBCTTTSSB-CSS--EEEETTTCCEEEHHHHHH
T ss_pred CCCCcccChH-hhC--cCEeCCCCChhHHHHHHH
Confidence 4679999855 332 122335666777777433
No 179
>2y7c_A Type-1 restriction enzyme ecoki specificity prote; transferase; 18.00A {Escherichia coli} PDB: 2y7h_A*
Probab=24.92 E-value=1.9e+02 Score=22.71 Aligned_cols=39 Identities=21% Similarity=0.164 Sum_probs=20.7
Q ss_pred CHHHHHHHHHHHHhhHH-HHHHHHHHHHHHHHHHHHHHHHH
Q psy5308 26 TLEERQIIESVMMRQKQ-EEERELEIMRRKQDEVHLLEQSI 65 (137)
Q Consensus 26 teeEr~~Il~VL~R~~~-le~~E~~RirkL~~el~~lk~~~ 65 (137)
.-+||+.|..+|..--. ++..+ +.+.++.+.|+++++.+
T Consensus 374 pl~EQ~~Iv~~l~~~~~~id~l~-~~~~~~~~~l~~lk~sL 413 (464)
T 2y7c_A 374 PVKEQAEIVRRVEQLFAYADTIE-KQVNNALARVNNLTQSI 413 (464)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHH
Confidence 46789999877743221 22222 22334445566666655
No 180
>1kx2_A Mono-heme C-type cytochrome SCYA; HAEM protein, ferrocytochrome, electron transport, GRAM negative, bacteria; HET: HEC; NMR {Shewanella putrefaciens} SCOP: a.3.1.1 PDB: 1kx7_A*
Probab=24.57 E-value=32 Score=21.27 Aligned_cols=17 Identities=18% Similarity=0.130 Sum_probs=14.0
Q ss_pred CCCCHHHHHHHHHHHHh
Q psy5308 23 SHLTLEERQIIESVMMR 39 (137)
Q Consensus 23 S~LteeEr~~Il~VL~R 39 (137)
..||++|...|...|..
T Consensus 63 ~~Lsd~ei~~l~~Yi~~ 79 (81)
T 1kx2_A 63 TDCTDEDYKAAIEFMSK 79 (81)
T ss_dssp SSCCHHHHHHHHHHHTS
T ss_pred CCCCHHHHHHHHHHHHH
Confidence 57999999999887753
No 181
>1wve_C 4-cresol dehydrogenase [hydroxylating] cytochrome C subunit; flavocytochrome, electron-transfer, FAD, heme, oxidoreductase; HET: FAD HEM; 1.85A {Pseudomonas putida} SCOP: a.3.1.1 PDB: 1diq_C* 1dii_C*
Probab=24.55 E-value=64 Score=19.79 Aligned_cols=17 Identities=12% Similarity=0.020 Sum_probs=14.3
Q ss_pred CCCCHHHHHHHHHHHHh
Q psy5308 23 SHLTLEERQIIESVMMR 39 (137)
Q Consensus 23 S~LteeEr~~Il~VL~R 39 (137)
..||++|...|...|..
T Consensus 56 ~~ls~~ei~~l~~yl~~ 72 (80)
T 1wve_C 56 SYVDDESLTQVAEYLSS 72 (80)
T ss_dssp TTSCHHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHHHH
Confidence 57999999999988753
No 182
>3v43_A Histone acetyltransferase KAT6A; MOZ, PHD finger, transferase-structural protein; 1.47A {Homo sapiens} PDB: 2ln0_A
Probab=24.43 E-value=24 Score=24.22 Aligned_cols=48 Identities=15% Similarity=0.205 Sum_probs=26.5
Q ss_pred ccccccccccccCCCCCCCccccccccccCCce-eecCCCCcceEEeeec
Q psy5308 81 ATCHICLKTKFADGVGHMCNYCNIRCCARCGGK-VTLRSNKVSVEVTTRG 129 (137)
Q Consensus 81 ~~C~~C~ktkf~~g~G~~C~~C~~rvC~rCg~~-v~lr~n~~~W~Ctvc~ 129 (137)
.+|.+|++....++.-..|..|..-+=..|=.. +...+.+ .|.|..|.
T Consensus 62 ~~C~vC~~~~~~~~~ll~Cd~C~~~yH~~Cl~p~l~~~P~~-~W~C~~C~ 110 (112)
T 3v43_A 62 KTCSSCRDQGKNADNMLFCDSCDRGFHMECCDPPLTRMPKG-MWICQICR 110 (112)
T ss_dssp CCBTTTCCCCCTTCCCEECTTTCCEECGGGCSSCCSSCCSS-CCCCTTTS
T ss_pred CccccccCcCCCccceEEcCCCCCeeecccCCCCCCCCCCC-CeECCCCC
Confidence 357777754333334556777766666666421 1222323 69998764
No 183
>3qc5_X Platelet binding protein GSPB; carbohydrate/sugar binding, sugar binding protein; HET: GOL; 1.40A {Streptococcus gordonii} PDB: 3qc6_X 4i8e_X* 3qd1_X*
Probab=24.03 E-value=58 Score=27.70 Aligned_cols=20 Identities=15% Similarity=0.371 Sum_probs=16.9
Q ss_pred CCCCCCCCCHHHHHHHHHHH
Q psy5308 18 IIPDLSHLTLEERQIIESVM 37 (137)
Q Consensus 18 ~~~dLS~LteeEr~~Il~VL 37 (137)
...|.++||+.|++.|.+=+
T Consensus 288 ~V~DPnnLTd~EKekVkeaV 307 (360)
T 3qc5_X 288 FVNNPNQLTEVEKNLVREAV 307 (360)
T ss_dssp EESCTTSCCHHHHHHHHHHH
T ss_pred EecCcccCCHHHHHHHHHHH
Confidence 56799999999999887744
No 184
>3okg_A Restriction endonuclease S subunits; coiled-coil, type I methyltransferase, DNA binding, DNA BIND protein; 1.95A {Thermoanaerobacter tengcongensis}
Probab=23.97 E-value=2.1e+02 Score=22.18 Aligned_cols=39 Identities=21% Similarity=0.204 Sum_probs=22.1
Q ss_pred CHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5308 26 TLEERQIIESVMMRQKQEEERELEIMRRKQDEVHLLEQS 64 (137)
Q Consensus 26 teeEr~~Il~VL~R~~~le~~E~~RirkL~~el~~lk~~ 64 (137)
+-+||+.|-++|..-.+.-+.-++.+.+|++.++.|.++
T Consensus 173 ~l~eQ~~I~~~l~~~~~~i~~~~~~~~~~~~~~~~l~q~ 211 (412)
T 3okg_A 173 PLEEQRRIVAKVEALMERVREVRRLRAEAQKDTELLMQT 211 (412)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 468999999999554432222223344555555555443
No 185
>1lj9_A Transcriptional regulator SLYA; HTH DNA binding protein, structural genomics, PSI, protein structure initiative; 1.60A {Enterococcus faecalis} SCOP: a.4.5.28
Probab=23.83 E-value=1.4e+02 Score=19.51 Aligned_cols=14 Identities=7% Similarity=0.119 Sum_probs=8.3
Q ss_pred CCCHHHHHHHHHHH
Q psy5308 24 HLTLEERQIIESVM 37 (137)
Q Consensus 24 ~LteeEr~~Il~VL 37 (137)
.||+.=++.+..+.
T Consensus 88 ~lT~~G~~~~~~~~ 101 (144)
T 1lj9_A 88 YATEKGKNVYPIIV 101 (144)
T ss_dssp EECHHHHHHHHHHH
T ss_pred EEChhHHHHHHHHH
Confidence 46776666655543
No 186
>3oi8_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: ADN; 1.99A {Neisseria meningitidis serogroup B}
Probab=23.78 E-value=47 Score=22.66 Aligned_cols=31 Identities=13% Similarity=0.052 Sum_probs=21.4
Q ss_pred CCCCHHHHHHHHHHHHhhHHHHHHHHHHHHH
Q psy5308 23 SHLTLEERQIIESVMMRQKQEEERELEIMRR 53 (137)
Q Consensus 23 S~LteeEr~~Il~VL~R~~~le~~E~~Rirk 53 (137)
|.+|++|-..++..-.+...+.+.|.+++.+
T Consensus 1 ~~~t~~el~~li~~~~~~g~l~~~e~~~i~~ 31 (156)
T 3oi8_A 1 SNASAEDVLNLLRQAHEQEVFDADTLLRLEK 31 (156)
T ss_dssp CCCCHHHHHHHHHHHHHTTSSCHHHHHHHHH
T ss_pred CCCCHHHHHHHHHhHHhcCCcCHHHHHHHHH
Confidence 6788999888888666655566656555554
No 187
>3oj7_A Putative histidine triad family protein; hydrolase, structural genomics, seattle structural genomics for infectious disease, ssgcid; 1.40A {Entamoeba histolytica} SCOP: d.13.1.0 PDB: 3omf_A* 3oxk_A*
Probab=23.72 E-value=40 Score=22.68 Aligned_cols=23 Identities=26% Similarity=0.421 Sum_probs=18.3
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHh
Q psy5308 17 DIIPDLSHLTLEERQIIESVMMR 39 (137)
Q Consensus 17 ~~~~dLS~LteeEr~~Il~VL~R 39 (137)
....+++.||++|++.+..++..
T Consensus 50 ~H~~~l~dL~~~e~~~l~~l~~~ 72 (117)
T 3oj7_A 50 QHIASLNEITEENEAFIGKVLYK 72 (117)
T ss_dssp SCCCSGGGCCTTTHHHHHHHHHH
T ss_pred hHhCCHHHCCHHHHHHHHHHHHH
Confidence 35788999999999888887643
No 188
>3kzn_A Aotcase, N-acetylornithine carbamoyltransferase; transcarbamylase, amino-acid biosynthesis, arginine biosynthesis, cytoplasm; HET: KCX AOR; 1.80A {Xanthomonas campestris PV} PDB: 3kzc_A* 3kzm_A* 3kzk_A* 3kzo_A* 3m4j_A* 3m5d_A* 3m5c_A* 3l05_A* 3l02_A* 3m4n_A* 3l06_A* 3l04_A*
Probab=23.35 E-value=52 Score=27.15 Aligned_cols=38 Identities=8% Similarity=0.081 Sum_probs=19.6
Q ss_pred cCcccccCCCCCCCCCCCCCCCCHHHHHHHHHHHHhhHHHH
Q psy5308 4 TEGMVTSMAQTNADIIPDLSHLTLEERQIIESVMMRQKQEE 44 (137)
Q Consensus 4 ~~~~~~~~~~~~~~~~~dLS~LteeEr~~Il~VL~R~~~le 44 (137)
+.|+++..+.=.|-+++++..||.+|-+.|+. +..+++
T Consensus 11 s~gl~p~~~~m~mkhlLsi~Dls~~ei~~ll~---~A~~~k 48 (359)
T 3kzn_A 11 SSGLVPRGSHMSLKHFLNTQDWSRAELDALLT---QAALFK 48 (359)
T ss_dssp ------------CCCBSCGGGSCHHHHHHHHH---HHHHHH
T ss_pred ccCCCCCCCCCccccccchhhCCHHHHHHHHH---HHHHHH
Confidence 33444333333556799999999999766665 566654
No 189
>3u5c_S 40S ribosomal protein S18-A, 40S ribosomal protein S17-A; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_M 3o30_L 3o2z_L 3u5g_S 1s1h_M 3jyv_M* 2zkq_m
Probab=23.16 E-value=1.3e+02 Score=22.10 Aligned_cols=21 Identities=29% Similarity=0.235 Sum_probs=17.7
Q ss_pred CCCCCCCCHHHHHHHHHHHHh
Q psy5308 19 IPDLSHLTLEERQIIESVMMR 39 (137)
Q Consensus 19 ~~dLS~LteeEr~~Il~VL~R 39 (137)
..-...|||+|-+.|..+|..
T Consensus 55 ~~r~g~Lt~~ei~~l~~~i~~ 75 (146)
T 3u5c_S 55 HKRAGELTQEELERIVQIMQN 75 (146)
T ss_dssp TSCSSSCCHHHHHHHHHHHTC
T ss_pred CceeccCCHHHHHHHHHHHHh
Confidence 345689999999999999975
No 190
>1mxr_A Ribonucleotide reductase R2; radical protein, DI iron, oxidoreductase; 1.42A {Escherichia coli} SCOP: a.25.1.2 PDB: 1jpr_A 1jqc_A 1xik_A 3uus_E* 1yfd_A 1piy_A 1r65_A 2xof_A* 1biq_B* 1rsv_A 1piz_A 1piu_A 1pim_A 1rsr_A 1biq_A* 1rib_A 1mrr_A 1rnr_A* 1pj0_A 1pj1_A ...
Probab=23.16 E-value=78 Score=26.07 Aligned_cols=27 Identities=19% Similarity=0.090 Sum_probs=22.6
Q ss_pred CCCCHHHHHHHHHHHHhhHHHHHHHHH
Q psy5308 23 SHLTLEERQIIESVMMRQKQEEERELE 49 (137)
Q Consensus 23 S~LteeEr~~Il~VL~R~~~le~~E~~ 49 (137)
..||+.||.+|..||.-...++.+--.
T Consensus 63 ~~Lt~~Er~~~~~~l~~~~~~Dsiv~~ 89 (375)
T 1mxr_A 63 QALPEHEKHIFISNLKYQTLLDSIQGR 89 (375)
T ss_dssp HTSCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 479999999999999888888776443
No 191
>3uul_A Utrophin; spectrin repeat, structural protein, cytoskeletal, helical bundle; 1.95A {Rattus norvegicus} PDB: 3uum_A
Probab=23.11 E-value=1.4e+02 Score=19.17 Aligned_cols=40 Identities=23% Similarity=0.130 Sum_probs=20.5
Q ss_pred CCCCCHHHHHHH----HHHHHhhHHHHHHHHHHHHHHHHHHHHH
Q psy5308 22 LSHLTLEERQII----ESVMMRQKQEEERELEIMRRKQDEVHLL 61 (137)
Q Consensus 22 LS~LteeEr~~I----l~VL~R~~~le~~E~~RirkL~~el~~l 61 (137)
-+|.++++...| -.+-.|-..+...=.+|..+|.+-|..+
T Consensus 72 ~~~~~~~~~~~i~~~l~~l~~rw~~L~~~~~~R~~~L~~aL~~~ 115 (118)
T 3uul_A 72 QGTLSDEEEFEIQEQMTLLNARWEALRVESMERQSRLHDALMEL 115 (118)
T ss_dssp TTCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555443333 3344555566655556666665555444
No 192
>2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=23.11 E-value=30 Score=22.53 Aligned_cols=29 Identities=31% Similarity=0.690 Sum_probs=18.9
Q ss_pred cccccccccccccCCCCCCCccccccccccCC
Q psy5308 80 DATCHICLKTKFADGVGHMCNYCNIRCCARCG 111 (137)
Q Consensus 80 ~~~C~~C~ktkf~~g~G~~C~~C~~rvC~rCg 111 (137)
...|+||+.... .|..|..|.++|=..|-
T Consensus 15 i~~C~IC~~~i~---~g~~C~~C~h~fH~~Ci 43 (74)
T 2ct0_A 15 VKICNICHSLLI---QGQSCETCGIRMHLPCV 43 (74)
T ss_dssp SCBCSSSCCBCS---SSEECSSSCCEECHHHH
T ss_pred CCcCcchhhHcc---cCCccCCCCchhhHHHH
Confidence 478999985543 35567777666555553
No 193
>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_B 2h0d_A
Probab=22.80 E-value=13 Score=24.80 Aligned_cols=28 Identities=25% Similarity=0.555 Sum_probs=15.5
Q ss_pred cccccccccccccCCCCCCCccccccccccC
Q psy5308 80 DATCHICLKTKFADGVGHMCNYCNIRCCARC 110 (137)
Q Consensus 80 ~~~C~~C~ktkf~~g~G~~C~~C~~rvC~rC 110 (137)
+..|.||... |.+. .....|.|.||..|
T Consensus 15 ~~~C~IC~~~-~~~p--~~~~~CgH~fC~~C 42 (108)
T 2ckl_A 15 HLMCVLCGGY-FIDA--TTIIECLHSFCKTC 42 (108)
T ss_dssp GTBCTTTSSB-CSSE--EEETTTCCEEEHHH
T ss_pred cCCCccCChH-HhCc--CEeCCCCChhhHHH
Confidence 5789999855 3221 11124555555555
No 194
>1yyb_A Programmed cell death protein 5; PDCD5(1-26), solution structure, apoptosis; NMR {Homo sapiens} SCOP: j.121.1.1
Probab=22.64 E-value=76 Score=16.96 Aligned_cols=15 Identities=13% Similarity=0.051 Sum_probs=8.6
Q ss_pred HHHHHHHHHHHHHHH
Q psy5308 41 KQEEERELEIMRRKQ 55 (137)
Q Consensus 41 ~~le~~E~~RirkL~ 55 (137)
.+|+++.+.|+..|+
T Consensus 5 ~ELeair~~rl~~lq 19 (27)
T 1yyb_A 5 EELEALRRQRLAELQ 19 (27)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 456666666655443
No 195
>3cu4_A Cytochrome C family protein; monoheme cytochrome, electron transport; HET: HEM; 1.30A {Geobacter sulfurreducens}
Probab=22.52 E-value=86 Score=19.01 Aligned_cols=21 Identities=10% Similarity=0.237 Sum_probs=16.0
Q ss_pred CCCCC--CCCHHHHHHHHHHHHh
Q psy5308 19 IPDLS--HLTLEERQIIESVMMR 39 (137)
Q Consensus 19 ~~dLS--~LteeEr~~Il~VL~R 39 (137)
||-+. .||++|.+.|...|..
T Consensus 60 Mp~~~~~~ls~~ei~~l~~yi~~ 82 (85)
T 3cu4_A 60 MPAFGEAMIPPADALKIGEYVVA 82 (85)
T ss_dssp SCCCCTTTSCHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCHHHHHHHHHHHHH
Confidence 44454 6999999999988753
No 196
>1gks_A Cytochrome C551; halophilic purple phototrophic bacterium, electron transport; HET: HEM; NMR {Halorhodospira halophila} SCOP: a.3.1.1
Probab=22.50 E-value=67 Score=19.57 Aligned_cols=21 Identities=14% Similarity=0.167 Sum_probs=15.4
Q ss_pred CCCC-CCCCHHHHHHHHHHHHh
Q psy5308 19 IPDL-SHLTLEERQIIESVMMR 39 (137)
Q Consensus 19 ~~dL-S~LteeEr~~Il~VL~R 39 (137)
||-+ ..||++|...|...|..
T Consensus 55 Mp~~~~~Lsd~ei~~l~~yi~~ 76 (78)
T 1gks_A 55 MPAYDGRADREDLVKAIEYMLS 76 (78)
T ss_dssp BCCCBTTBCHHHHHHHHHHHHT
T ss_pred CCCCCCCCCHHHHHHHHHHHHh
Confidence 4444 46999999999887753
No 197
>1umq_A Photosynthetic apparatus regulatory protein; DNA-binding protein, response regulator, DNA binding domain, helix-turn-helix; NMR {Rhodobacter sphaeroides} SCOP: a.4.1.12
Probab=22.49 E-value=67 Score=21.13 Aligned_cols=19 Identities=5% Similarity=-0.099 Sum_probs=14.7
Q ss_pred CCCCHHHHHHHHHHHHhhH
Q psy5308 23 SHLTLEERQIIESVMMRQK 41 (137)
Q Consensus 23 S~LteeEr~~Il~VL~R~~ 41 (137)
..|.+-|++.|..+|.+..
T Consensus 36 ~~l~~~Er~~I~~aL~~~~ 54 (81)
T 1umq_A 36 MSADRVRWEHIQRIYEMCD 54 (81)
T ss_dssp SCHHHHHHHHHHHHHHHTT
T ss_pred hhHHHHHHHHHHHHHHHhC
Confidence 3466789999999988754
No 198
>2y7c_A Type-1 restriction enzyme ecoki specificity prote; transferase; 18.00A {Escherichia coli} PDB: 2y7h_A*
Probab=22.36 E-value=2.1e+02 Score=22.55 Aligned_cols=38 Identities=13% Similarity=0.173 Sum_probs=20.1
Q ss_pred CHHHHHHHHHHHHhhHHHHHHHH--HHHHHHHHHHHHHHHHH
Q psy5308 26 TLEERQIIESVMMRQKQEEEREL--EIMRRKQDEVHLLEQSI 65 (137)
Q Consensus 26 teeEr~~Il~VL~R~~~le~~E~--~RirkL~~el~~lk~~~ 65 (137)
.-+||+.|.++|. +.+...++ +.+.++.+.|+++++.+
T Consensus 161 pl~EQ~~Iv~~Ld--~~~~~id~~~~~~~~~~~~l~~~k~~l 200 (464)
T 2y7c_A 161 PLAEQKIIAEKLD--TLLAQVDSTKARFEQIPQILKRFRQAV 200 (464)
T ss_dssp CHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3579999998883 33333321 22333344455555544
No 199
>2lv9_A Histone-lysine N-methyltransferase MLL5; zinc finger, transcription, protein binding, NESG, northeast structural genomics consortium, SGC; NMR {Homo sapiens}
Probab=22.19 E-value=21 Score=24.18 Aligned_cols=49 Identities=22% Similarity=0.314 Sum_probs=29.6
Q ss_pred ccccccccccccCCCCCCCccccccccccCCceeecCCCCcceEEeeeccCC
Q psy5308 81 ATCHICLKTKFADGVGHMCNYCNIRCCARCGGKVTLRSNKVSVEVTTRGHNN 132 (137)
Q Consensus 81 ~~C~~C~ktkf~~g~G~~C~~C~~rvC~rCg~~v~lr~n~~~W~Ctvc~~~~ 132 (137)
-.| +|++. ..++.-..|..|..-+=..|-+....... ..|.|..|-..+
T Consensus 29 vrC-iC~~~-~~~~~mi~Cd~C~~w~H~~C~~~~~~~~p-~~w~C~~C~~~~ 77 (98)
T 2lv9_A 29 TRC-ICGFT-HDDGYMICCDKCSVWQHIDCMGIDRQHIP-DTYLCERCQPRN 77 (98)
T ss_dssp CCC-TTSCC-SCSSCEEEBTTTCBEEETTTTTCCTTSCC-SSBCCTTTSSSC
T ss_pred EEe-ECCCc-cCCCcEEEcCCCCCcCcCcCCCCCccCCC-CCEECCCCcCCC
Confidence 457 78755 23345567888887777777544211221 269999986443
No 200
>3okg_A Restriction endonuclease S subunits; coiled-coil, type I methyltransferase, DNA binding, DNA BIND protein; 1.95A {Thermoanaerobacter tengcongensis}
Probab=21.98 E-value=1.1e+02 Score=23.80 Aligned_cols=40 Identities=25% Similarity=0.260 Sum_probs=22.7
Q ss_pred CHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5308 26 TLEERQIIESVMMRQKQEEERELEIMRRKQDEVHLLEQSI 65 (137)
Q Consensus 26 teeEr~~Il~VL~R~~~le~~E~~RirkL~~el~~lk~~~ 65 (137)
..+||+.|..+|..-..+-..-++.+.++.+.|+++++.+
T Consensus 364 ~l~eQ~~I~~~l~~~d~~i~~l~~~~~~~~~~L~~lk~~L 403 (412)
T 3okg_A 364 PLEEQRRIVAYLDQIQQQVAALKRAQAETEAELKRLEQAI 403 (412)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHSCCHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4689999999986433322222222333455666666654
No 201
>2l2l_A Transcriptional repressor P66-alpha; DNA methylation, coiled-coil, NURD, MBD2, P66alpha, transfer; NMR {Homo sapiens}
Probab=21.88 E-value=1.4e+02 Score=17.90 Aligned_cols=12 Identities=25% Similarity=0.324 Sum_probs=8.4
Q ss_pred CHHHHHHHHHHH
Q psy5308 26 TLEERQIIESVM 37 (137)
Q Consensus 26 teeEr~~Il~VL 37 (137)
+++||+.++.-|
T Consensus 2 s~~ere~~i~~L 13 (43)
T 2l2l_A 2 SPEERERMIKQL 13 (43)
T ss_dssp CHHHHHHHHHHH
T ss_pred CHHHHHHHHHHH
Confidence 467777777755
No 202
>3iz6_M 40S ribosomal protein S18 (S13P); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=21.80 E-value=1.5e+02 Score=21.90 Aligned_cols=21 Identities=19% Similarity=0.162 Sum_probs=17.8
Q ss_pred CCCCCCCCHHHHHHHHHHHHh
Q psy5308 19 IPDLSHLTLEERQIIESVMMR 39 (137)
Q Consensus 19 ~~dLS~LteeEr~~Il~VL~R 39 (137)
..-...|||+|-+.|..+|+.
T Consensus 53 ~~r~g~Lt~~ei~~l~~~i~~ 73 (152)
T 3iz6_M 53 NKRAGELSAEEMDRLMAVVHN 73 (152)
T ss_dssp SSBTTTSCHHHHHHHHHHHHS
T ss_pred CcEeCcCCHHHHHHHHHHHHh
Confidence 345789999999999999975
No 203
>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=21.64 E-value=17 Score=22.18 Aligned_cols=43 Identities=19% Similarity=0.311 Sum_probs=25.1
Q ss_pred cccccccccccccCCCCCCCccccccccccCCceeecCCCCcceEEeeecc
Q psy5308 80 DATCHICLKTKFADGVGHMCNYCNIRCCARCGGKVTLRSNKVSVEVTTRGH 130 (137)
Q Consensus 80 ~~~C~~C~ktkf~~g~G~~C~~C~~rvC~rCg~~v~lr~n~~~W~Ctvc~~ 130 (137)
...|.||... |.+. +=..|.|.||..|-.... .. ...|.+|-.
T Consensus 15 ~~~C~IC~~~-~~~~---~~~~CgH~fC~~Ci~~~~-~~---~~~CP~Cr~ 57 (71)
T 2d8t_A 15 VPECAICLQT-CVHP---VSLPCKHVFCYLCVKGAS-WL---GKRCALCRQ 57 (71)
T ss_dssp CCBCSSSSSB-CSSE---EEETTTEEEEHHHHHHCT-TC---SSBCSSSCC
T ss_pred CCCCccCCcc-cCCC---EEccCCCHHHHHHHHHHH-HC---CCcCcCcCc
Confidence 5789999855 3322 112488888888854321 11 246766543
No 204
>3hd7_A Vesicle-associated membrane protein 2; membrane protein, coiled-coil, 4-helical bundle, cell juncti cytoplasmic vesicle, membrane, phosphoprotein; HET: GGG; 3.40A {Rattus norvegicus} PDB: 3hd9_A 3ipd_A
Probab=21.54 E-value=1.8e+02 Score=19.21 Aligned_cols=34 Identities=21% Similarity=0.207 Sum_probs=21.0
Q ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5308 30 RQIIESVMMRQKQEEERELEIMRRKQDEVHLLEQS 64 (137)
Q Consensus 30 r~~Il~VL~R~~~le~~E~~RirkL~~el~~lk~~ 64 (137)
++-|-.||+|.+.++...++- ..|.++-...+++
T Consensus 22 ~~NI~kvL~RgekL~~L~~kt-~~L~~~s~~F~~~ 55 (91)
T 3hd7_A 22 RVNVDKVLERDQKLSELDDRA-DALQAGASQFETS 55 (91)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHccchHHHHHHHH-HHHHHHHHHHHHH
Confidence 456778899998888776433 3444444444443
No 205
>2lo3_A SAGA-associated factor 73; zinc-finger, deubiquitination, transcription factor, SAGA CO transcription; NMR {Saccharomyces cerevisiae}
Probab=21.50 E-value=35 Score=20.73 Aligned_cols=15 Identities=33% Similarity=0.922 Sum_probs=11.4
Q ss_pred cccccccCCceeecC
Q psy5308 103 NIRCCARCGGKVTLR 117 (137)
Q Consensus 103 ~~rvC~rCg~~v~lr 117 (137)
+-|||..||..+.+.
T Consensus 16 ~YRvC~~CgkPi~ls 30 (44)
T 2lo3_A 16 QYRVCEKCGKPLALT 30 (44)
T ss_dssp CEEECTTTCCEEETT
T ss_pred cchhhcccCCcchHH
Confidence 458999999887654
No 206
>1cc5_A Cytochrome C5; electron transport (heme protein); HET: HEM; 2.50A {Azotobacter vinelandii} SCOP: a.3.1.1
Probab=21.28 E-value=78 Score=19.79 Aligned_cols=16 Identities=13% Similarity=0.011 Sum_probs=13.0
Q ss_pred CCCCHHHHHHHHHHHH
Q psy5308 23 SHLTLEERQIIESVMM 38 (137)
Q Consensus 23 S~LteeEr~~Il~VL~ 38 (137)
..||++|...|...|.
T Consensus 66 ~~Lsd~ei~~v~~yi~ 81 (83)
T 1cc5_A 66 ADCSDDELKAAIGKMS 81 (83)
T ss_dssp SSCCHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHH
Confidence 3699999999888764
No 207
>1m2o_A SEC23, protein transport protein SEC23, SEC23P; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 PDB: 1m2v_A 2qtv_A*
Probab=21.25 E-value=29 Score=31.57 Aligned_cols=34 Identities=15% Similarity=0.156 Sum_probs=22.0
Q ss_pred CCCCcc--ccccccccCCceeecCCCCcceEEeeeccCCC
Q psy5308 96 GHMCNY--CNIRCCARCGGKVTLRSNKVSVEVTTRGHNNN 133 (137)
Q Consensus 96 G~~C~~--C~~rvC~rCg~~v~lr~n~~~W~Ctvc~~~~~ 133 (137)
-..|.. |+-.+..-|... . ++..|+|.+|.+.|.
T Consensus 53 pvRC~~~~CrayiNPf~~~~---~-~~~~W~C~~C~~~N~ 88 (768)
T 1m2o_A 53 PVVCSGPHCKSILNPYCVID---P-RNSSWSCPICNSRNH 88 (768)
T ss_dssp CCBCCSTTTCCBCCTTSCEE---T-TTTEECCTTTCCCCB
T ss_pred CCccCCCCCCeEECCceEEe---C-CCCEEEcccCCCCCC
Confidence 345665 666666666532 2 234899999988764
No 208
>2vje_B MDM4 protein; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_B*
Probab=21.11 E-value=18 Score=22.05 Aligned_cols=26 Identities=31% Similarity=0.700 Sum_probs=15.0
Q ss_pred cccccccccccc----cc-CCCCCC--Cccccc
Q psy5308 79 LDATCHICLKTK----FA-DGVGHM--CNYCNI 104 (137)
Q Consensus 79 ~~~~C~~C~ktk----f~-~g~G~~--C~~C~~ 104 (137)
....|.+|.... ++ ..+||. |..|-.
T Consensus 6 ~~~~C~IC~~~~~~~~~~~~pCgH~~~C~~C~~ 38 (63)
T 2vje_B 6 LLKPCSLCEKRPRDGNIIHGRTGHLVTCFHCAR 38 (63)
T ss_dssp GGSBCTTTSSSBSCEEEEETTEEEEEECHHHHH
T ss_pred cCCCCcccCCcCCCeEEEecCCCCHhHHHHHHH
Confidence 367899998542 22 146664 455543
No 209
>1w7p_D VPS36P, YLR417W; ESCRT-II complex, endosomal protein sorting, protein transpo; 3.60A {Saccharomyces cerevisiae} SCOP: a.4.5.54 a.4.5.54
Probab=20.80 E-value=21 Score=31.93 Aligned_cols=14 Identities=7% Similarity=-0.194 Sum_probs=0.0
Q ss_pred CcceEEeeeccCCC
Q psy5308 120 KVSVEVTTRGHNNN 133 (137)
Q Consensus 120 ~~~W~Ctvc~~~~~ 133 (137)
...|+|+||.+.|-
T Consensus 115 ~~tWvC~ICsfsN~ 128 (566)
T 1w7p_D 115 VSTWVCPICMVSNE 128 (566)
T ss_dssp --------------
T ss_pred ccceeccccccCCC
Confidence 35799999998875
No 210
>2l5u_A Chromodomain-helicase-DNA-binding protein 4; CHD4, MI2B, MI2-beta, PHD, protein binding, peptide binding metal binding protein; NMR {Homo sapiens}
Probab=20.77 E-value=13 Score=23.06 Aligned_cols=48 Identities=13% Similarity=0.275 Sum_probs=29.1
Q ss_pred ccccccccccccccCCCCCCCccccccccccCCce-eecCCCCcceEEeeeccC
Q psy5308 79 LDATCHICLKTKFADGVGHMCNYCNIRCCARCGGK-VTLRSNKVSVEVTTRGHN 131 (137)
Q Consensus 79 ~~~~C~~C~ktkf~~g~G~~C~~C~~rvC~rCg~~-v~lr~n~~~W~Ctvc~~~ 131 (137)
.+..|.+|++. +.-..|..|..-+=..|=.. ++..+.+ .|.|..|...
T Consensus 10 ~~~~C~vC~~~----g~ll~CD~C~~~fH~~Cl~p~l~~~p~g-~W~C~~C~~~ 58 (61)
T 2l5u_A 10 HQDYCEVCQQG----GEIILCDTCPRAYHMVCLDPDMEKAPEG-KWSCPHCEKE 58 (61)
T ss_dssp CCSSCTTTSCC----SSEEECSSSSCEEEHHHHCTTCCSCCCS-SCCCTTGGGG
T ss_pred CCCCCccCCCC----CcEEECCCCChhhhhhccCCCCCCCCCC-ceECcccccc
Confidence 36789999864 33345666666555555322 1122333 7999998754
No 211
>3h8k_B Autocrine motility factor receptor, isoform 2; alpha beta, all alpha, ligase, UBL conjugation pathway, endo reticulum, membrane, metal-binding; 1.80A {Homo sapiens} PDB: 3fsh_C
Probab=20.70 E-value=1.2e+02 Score=16.59 Aligned_cols=24 Identities=25% Similarity=0.228 Sum_probs=12.9
Q ss_pred CHHHHHHHHHHHHhhHHHHHHHHHHHHH
Q psy5308 26 TLEERQIIESVMMRQKQEEERELEIMRR 53 (137)
Q Consensus 26 teeEr~~Il~VL~R~~~le~~E~~Rirk 53 (137)
+++||+.+|+ +...+-+.+.|-+-
T Consensus 2 s~~eRq~~Lq----~Rk~~mi~~ARrry 25 (28)
T 3h8k_B 2 SADERQRMLV----QRKDELLQQARKRF 25 (28)
T ss_dssp CHHHHHHHHH----HHHHHHHHHHHHHH
T ss_pred CHHHHHHHHH----HHHHHHHHHHHHHH
Confidence 5677777755 33344444455433
No 212
>2cuj_A Transcriptional adaptor 2-like; transcriptional regulation, nuclear protein, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.18
Probab=20.55 E-value=1.1e+02 Score=21.44 Aligned_cols=17 Identities=18% Similarity=0.356 Sum_probs=14.5
Q ss_pred CCCCCCCCCCHHHHHHH
Q psy5308 17 DIIPDLSHLTLEERQII 33 (137)
Q Consensus 17 ~~~~dLS~LteeEr~~I 33 (137)
..+||+..||++|++.-
T Consensus 33 ~~~pg~~LLs~~E~~LC 49 (108)
T 2cuj_A 33 TGLPGTEKLNEKEKELC 49 (108)
T ss_dssp TTSTTTTTSCHHHHHHH
T ss_pred cCCCCchhcCHHHHHHH
Confidence 56899999999999863
No 213
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=20.47 E-value=14 Score=24.69 Aligned_cols=10 Identities=30% Similarity=0.989 Sum_probs=8.1
Q ss_pred cccccccccc
Q psy5308 80 DATCHICLKT 89 (137)
Q Consensus 80 ~~~C~~C~kt 89 (137)
+..|.||...
T Consensus 7 ~~~C~IC~~~ 16 (133)
T 4ap4_A 7 TVSCPICMDG 16 (133)
T ss_dssp SCBCTTTCCB
T ss_pred CCCCcccChh
Confidence 5789999865
No 214
>1wfe_A Riken cDNA 2310008M20 protein; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.80.1.1
Probab=20.31 E-value=26 Score=23.72 Aligned_cols=28 Identities=29% Similarity=0.860 Sum_probs=21.7
Q ss_pred cccccc--cccccccCCCCCCCccccccccccC
Q psy5308 80 DATCHI--CLKTKFADGVGHMCNYCNIRCCARC 110 (137)
Q Consensus 80 ~~~C~~--C~ktkf~~g~G~~C~~C~~rvC~rC 110 (137)
...|.. |.+..| .+..|.+|...||.+=
T Consensus 25 ~~~C~~~~Ck~~~~---l~f~C~~C~~~FC~~H 54 (86)
T 1wfe_A 25 SYSCSFKGCTDVEL---VAVICPYCEKNFCLRH 54 (86)
T ss_dssp CEECCSTTCCCEES---SCEECTTTCCEECGGG
T ss_pred CCCCCCcCCCCCCc---cceECCCCCccccccc
Confidence 467888 986544 5669999999999853
No 215
>3ulq_B Transcriptional regulatory protein COMA; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} PDB: 2krf_A
Probab=20.16 E-value=61 Score=21.12 Aligned_cols=21 Identities=24% Similarity=0.166 Sum_probs=12.2
Q ss_pred CCCCCCCCCCHHHHHHHHHHH
Q psy5308 17 DIIPDLSHLTLEERQIIESVM 37 (137)
Q Consensus 17 ~~~~dLS~LteeEr~~Il~VL 37 (137)
........||+.|++++.-+.
T Consensus 22 ~~~~~~~~Lt~rE~~Vl~l~~ 42 (90)
T 3ulq_B 22 SSQKEQDVLTPRECLILQEVE 42 (90)
T ss_dssp -------CCCHHHHHHHHHHH
T ss_pred cccccccCCCHHHHHHHHHHH
Confidence 445667899999999887765
Done!