RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy5308
(137 letters)
>d1zbdb_ g.50.1.1 (B:) Effector domain of rabphilin-3a {Rat (Rattus
norvegicus) [TaxId: 10116]}
Length = 124
Score = 61.7 bits (149), Expect = 7e-14
Identities = 20/97 (20%), Positives = 38/97 (39%), Gaps = 11/97 (11%)
Query: 25 LTLEERQIIESVMMRQKQEEERELEIMRRKQDEVHLLEQSIRQRSEQQKKAGVELDATCH 84
LT EE++II V+ R ++ E E E + R D + + +++ + C
Sbjct: 3 LTDEEKEIINRVIARAEKMETMEQERIGRLVDRLETMRKNVAGDGVNR----------CI 52
Query: 85 ICLKT-KFADGVGHMCNYCNIRCCARCGGKVTLRSNK 120
+C + +C C C +CG + +
Sbjct: 53 LCGEQLGMLGSASVVCEDCKKNVCTKCGVETSNNRPH 89
>d1faqa_ g.49.1.1 (A:) RAF-1 {Human (Homo sapiens) [TaxId: 9606]}
Length = 52
Score = 25.3 bits (55), Expect = 0.71
Identities = 11/35 (31%), Positives = 12/35 (34%), Gaps = 3/35 (8%)
Query: 81 ATCHICLKTKFADGVGHMCNYCNIRCCARCGGKVT 115
A C IC K G C C + C KV
Sbjct: 15 AFCDICQKFLLN---GFRCQTCGYKFHEHCSTKVP 46
>d1h16a_ c.7.1.1 (A:) Pyruvate formate-lyase, PFL {Escherichia coli
[TaxId: 562]}
Length = 759
Score = 26.7 bits (59), Expect = 1.1
Identities = 9/47 (19%), Positives = 21/47 (44%), Gaps = 2/47 (4%)
Query: 42 QEEERELEIMRRKQDEVHLLEQSIRQRSE--QQKKAGVELDATCHIC 86
+++ + ++ + LEQ+IR R E +Q +A ++
Sbjct: 194 KDKLAQFTSLQADLENGVNLEQTIRLREEIAEQHRALGQMKEMAAKY 240
>d1r79a_ g.49.1.1 (A:) Diacylglycerol kinase delta {Human (Homo
sapiens) [TaxId: 9606]}
Length = 84
Score = 25.0 bits (54), Expect = 1.7
Identities = 8/37 (21%), Positives = 11/37 (29%), Gaps = 2/37 (5%)
Query: 81 ATCHICLKT--KFADGVGHMCNYCNIRCCARCGGKVT 115
A C +C KT C +C C +
Sbjct: 39 AKCTVCDKTCGSVLRLQDWRCLWCKAMVHTSCKESLL 75
>d1ptqa_ g.49.1.1 (A:) Protein kinase C-delta (PKCdelta) {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 50
Score = 24.3 bits (52), Expect = 2.0
Identities = 8/36 (22%), Positives = 10/36 (27%), Gaps = 1/36 (2%)
Query: 81 ATCHICLKT-KFADGVGHMCNYCNIRCCARCGGKVT 115
C C G C C + +C KV
Sbjct: 12 TFCDHCGSLLWGLVKQGLKCEDCGMNVHHKCREKVA 47
>d1dvpa2 g.50.1.1 (A:149-220) Hrs {Fruit fly (Drosophila
melanogaster) [TaxId: 7227]}
Length = 72
Score = 24.2 bits (52), Expect = 2.5
Identities = 8/31 (25%), Positives = 9/31 (29%)
Query: 80 DATCHICLKTKFADGVGHMCNYCNIRCCARC 110
CH C H C C C +C
Sbjct: 13 GRVCHRCRVEFTFTNRKHHCRNCGQVFCGQC 43
>d1sa0e_ a.137.10.1 (E:) Stathmin 4 {Rat (Rattus norvegicus) [TaxId:
10116]}
Length = 138
Score = 24.8 bits (54), Expect = 3.1
Identities = 8/46 (17%), Positives = 18/46 (39%)
Query: 28 EERQIIESVMMRQKQEEERELEIMRRKQDEVHLLEQSIRQRSEQQK 73
++ + M K+ E L M + E + +R+ E ++
Sbjct: 93 MAKEKLAQKMESNKENREAHLAAMLERLQEKDKHAEEVRKNKELKE 138
>d1v5na_ g.49.1.3 (A:) Pdi-like hypothetical protein At1g60420
{Thale cress (Arabidopsis thaliana) [TaxId: 3702]}
Length = 89
Score = 24.1 bits (52), Expect = 3.5
Identities = 7/29 (24%), Positives = 12/29 (41%), Gaps = 2/29 (6%)
Query: 82 TCHICLKTKFADGVGHMCNYCNIRCCARC 110
TC C + + C+ C+ A+C
Sbjct: 49 TCDKC--EEEGTIWSYHCDECDFDLHAKC 75
>d1xu2r_ g.24.1.2 (R:) Tumor necrosis factor receptor superfamily
member 17, BCMA {Human (Homo sapiens) [TaxId: 9606]}
Length = 36
Score = 23.2 bits (49), Expect = 3.8
Identities = 7/21 (33%), Positives = 12/21 (57%)
Query: 86 CLKTKFADGVGHMCNYCNIRC 106
C + ++ D + H C C +RC
Sbjct: 1 CSQNEYFDSLLHACIPCQLRC 21
>d1vfya_ g.50.1.1 (A:) vps27p protein {Baker's yeast (Saccharomyces
cerevisiae) [TaxId: 4932]}
Length = 67
Score = 23.8 bits (51), Expect = 4.0
Identities = 8/31 (25%), Positives = 8/31 (25%)
Query: 80 DATCHICLKTKFADGVGHMCNYCNIRCCARC 110
C IC K H C C C
Sbjct: 5 SDACMICSKKFSLLNRKHHCRSCGGVFCQEH 35
>d1wfka_ g.50.1.1 (A:) Zinc finger FYVE domain containing protein 19
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 88
Score = 23.5 bits (50), Expect = 5.3
Identities = 8/38 (21%), Positives = 13/38 (34%), Gaps = 2/38 (5%)
Query: 74 KAGVELDATCHICLKTKFADGVG-HMCNYCNIRCCARC 110
+++ C+ C KF + C C C C
Sbjct: 3 SGSSGMESRCYGC-AVKFTLFKKEYGCKNCGRAFCNGC 39
>d1kbea_ g.49.1.1 (A:) Kinase suppressor of Ras, Ksr {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 49
Score = 22.9 bits (49), Expect = 5.5
Identities = 8/33 (24%), Positives = 16/33 (48%), Gaps = 3/33 (9%)
Query: 82 TCHICLKTKFADGVGHMCNYCNIRCCARCGGKV 114
C++C K+ G C +C ++C +C +
Sbjct: 16 VCNVCQKSMIF---GVKCKHCRLKCHNKCTKEA 45
>d1wepa_ g.50.1.2 (A:) PHD finger protein 8 {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 79
Score = 23.5 bits (50), Expect = 5.7
Identities = 7/38 (18%), Positives = 12/38 (31%)
Query: 75 AGVELDATCHICLKTKFADGVGHMCNYCNIRCCARCGG 112
+G+ L +C + + C C C G
Sbjct: 6 SGMALVPVYCLCRQPYNVNHFMIECGLCQDWFHGSCVG 43
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.319 0.131 0.379
Gapped
Lambda K H
0.267 0.0554 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 479,855
Number of extensions: 20802
Number of successful extensions: 124
Number of sequences better than 10.0: 1
Number of HSP's gapped: 121
Number of HSP's successfully gapped: 47
Length of query: 137
Length of database: 2,407,596
Length adjustment: 76
Effective length of query: 61
Effective length of database: 1,364,116
Effective search space: 83211076
Effective search space used: 83211076
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 48 (22.7 bits)