BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy5309
(1618 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1WZ2|A Chain A, The Crystal Structure Of Leucyl-Trna Synthetase And
Trna(Leucine) Complex
pdb|1WZ2|B Chain B, The Crystal Structure Of Leucyl-Trna Synthetase And
Trna(Leucine) Complex
Length = 967
Score = 196 bits (498), Expect = 8e-50, Method: Compositional matrix adjust.
Identities = 154/560 (27%), Positives = 236/560 (42%), Gaps = 120/560 (21%)
Query: 659 VPIIQVPEYGNLCAVTVYEKLKIQSQNDKDKLQEAKELVYLKGFYDGIMLVXXXXXXXXX 718
+ +I++ YG+ AV KL I+SQ DK+KL++A + +Y ++ GI V
Sbjct: 362 ISLIKLEGYGDFPAVEEVNKLGIKSQKDKEKLEQATKTIYKAEYHKGIFKVPPYEGKPVQ 421
Query: 719 XXXXXXXXXIDIIGVALKAPVTSHSVIYTLPMLSIREDKGTGIVTSVPSDSPDDYAALVD 778
+ G+A ++Y ++ G V + D
Sbjct: 422 EVKEAIAKEMLEKGIA--------EIMYEFAEKNVISRFGNRAVIKIIHD---------- 463
Query: 779 LKKKPPFREKYHVTDEMCVVALCDQWYLDYGEPTWKAAAEQCLANMNTYHDEVRRNFGAS 838
QW++DYG P WK A + L M + R F A
Sbjct: 464 ------------------------QWFIDYGNPEWKEKARKALERMKILPETRRAQFEAI 499
Query: 839 LNWLHEYACSRTYGLGTKLPWDEQWLIESLSDSTIYMAYYTVAHLLQGGTFRGENGNALN 898
++WL + AC+R GLGT LPWD +W+IESLSDSTIYMAYYT++ + R E
Sbjct: 500 IDWLDKKACARKIGLGTPLPWDPEWVIESLSDSTIYMAYYTISRHI--NKLRQEG----K 553
Query: 899 IKAEDLTPEVWDYVFFK------AAPFPPKCRVPKAKLDIMRREFQYWYPVDLRCSGKDL 952
+ E LTPE +DY+F + K +P + M+ EF+YWYP+D RCSGKDL
Sbjct: 554 LDPEKLTPEFFDYIFLEEFSEDKEKELEKKTGIPAEIIHEMKEEFEYWYPLDWRCSGKDL 613
Query: 953 IQNHLTFFIYIHTAIWGDEPEMWPRGIRANGHLLLNSAKDLIQNHLTFFIYKLFSDLIQN 1012
I NHLTFFI+ H AI+ + E WP+GI NG L K
Sbjct: 614 IPNHLTFFIFNHVAIFRE--EHWPKGIAVNGFGTLEGQK--------------------- 650
Query: 1013 HLTFFIYIHTAIWGDEPEMWPRGIRANGHLLLNSAKMSKSEGNFLTLTEAVKKFSADGMR 1072
++ G++L NF+ +A+++ AD +R
Sbjct: 651 ----------------------MSKSKGNVL-----------NFI---DAIEENGADVVR 674
Query: 1073 LCLADSGDSVEDANFVESMADAGILR--LYTFIEWVKEILATQSTLRTGSQDSFNDKVFL 1130
L + + D++F + G LR + F E + + + +D D+ L
Sbjct: 675 LYIMSLAEH--DSDFDWRRKEVGKLRKQIERFYELISQFAEYEVKGNVELKDI--DRWML 730
Query: 1131 SEMNLKIKETEDHYTKMLFKEALRTGFFELQAARDKYRELTAAEGGMHRTLVLR-FVEVQ 1189
+N IKET + + + A++ F+ + Y T + VLR +V
Sbjct: 731 HRLNKAIKETTNALEEFRTRTAVQWAFYSIMNDLRWYLRRTEGRDDEAKRYVLRTLADVW 790
Query: 1190 ALLLCPVCPHVAEHVYQLLG 1209
L+ P PH+ E +++ LG
Sbjct: 791 VRLMAPFTPHICEELWEKLG 810
Score = 143 bits (360), Expect = 9e-34, Method: Compositional matrix adjust.
Identities = 78/200 (39%), Positives = 107/200 (53%), Gaps = 18/200 (9%)
Query: 406 CTERSARNMAYQGFTEVEGKINVLLRLTGQVCIRSGDECVVALC-DQWYLDYGEPTWKAA 464
E A+ M +G E+ + V R G+ V+ + DQW++DYG P WK
Sbjct: 423 VKEAIAKEMLEKGIAEIMYEF-----AEKNVISRFGNRAVIKIIHDQWFIDYGNPEWKEK 477
Query: 465 AEQCLANMNTYHDEVRRNFGASLNWLHEYACSRTYGLGTKLPWDEQWLIESLSDSTIYMA 524
A + L M + R F A ++WL + AC+R GLGT LPWD +W+IESLSDSTIYMA
Sbjct: 478 ARKALERMKILPETRRAQFEAIIDWLDKKACARKIGLGTPLPWDPEWVIESLSDSTIYMA 537
Query: 525 YYTVAHLLQGGTFRGENGNALNIKAEDLTPEVWDYVFFKS------APFPPKCRVPKAKL 578
YYT++ + R E + E LTPE +DY+F + K +P +
Sbjct: 538 YYTISRHI--NKLRQEG----KLDPEKLTPEFFDYIFLEEFSEDKEKELEKKTGIPAEII 591
Query: 579 DIMRREFQYWYPVDLRCSGK 598
M+ EF+YWYP+D RCSGK
Sbjct: 592 HEMKEEFEYWYPLDWRCSGK 611
Score = 119 bits (298), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 79/286 (27%), Positives = 122/286 (42%), Gaps = 56/286 (19%)
Query: 72 KIYEETVGDAVRSSPDDKXXXXXXXXYMNGRLHLGHTFSLSKCEFSVRFNRLKGKRVLFP 131
KI+E + D + + K Y++G LH+GH + + + RF R++G VLFP
Sbjct: 21 KIFEPNIRDKPK---EKKFYITVAFPYLSGHLHVGHARTYTIPDVIARFKRMQGYNVLFP 77
Query: 132 FGFHCTGMPIKACADKLKREMESFGFPPQFPSEDTEPQTXXXXXXXXXXXXXXXXXXXXX 191
+H TG PI A+++K + +P+T
Sbjct: 78 MAWHITGSPIVGIAERIK---------------NRDPKTI-------------------- 102
Query: 192 XXXXXXXYQWQIMQSLGLEDDEIRKFADASHWLDHFPPLAVQDLRSIGIHVDWRRTFITT 251
W + ++ + F D + + +F A + G VDW R F TT
Sbjct: 103 ---------WIYRDVYKVPEEILWTFEDPINIVKYFMKAAKETFIRAGFSVDWSREFYTT 153
Query: 252 DSNPFFDSFVRWQFMRLRDRHKIKYGKRYTVFSPRDNQPCMDHDRASGEGVGPQEYTLIK 311
P F F+ WQF +L+++ I G + P P DHD GE V +Y +IK
Sbjct: 154 SLFPPFSKFIEWQFWKLKEKGYIVKGAHRVRWDPVVGTPLGDHDLMEGEDVPILDYIIIK 213
Query: 312 MRLVKPYPAKLCCLDSKPVFLVAATLRPETMYGQTNAWVRPDMAYI 357
L + + + ++L AATLRPET+YG TN WV P+ Y+
Sbjct: 214 FELRE---------NGEVIYLPAATLRPETVYGVTNMWVNPNATYV 250
Score = 80.9 bits (198), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 66/235 (28%), Positives = 102/235 (43%), Gaps = 42/235 (17%)
Query: 1209 GKDLIQNHLTFFIYIHTAIWGDEPEMWPRGIRANGHLLLNSAKMSKSEGNFLTLTEAVKK 1268
GKDLI NHLTFFI+ H AI+ +E WP+GI NG L KMSKS+GN L +A+++
Sbjct: 610 GKDLIPNHLTFFIFNHVAIFREE--HWPKGIAVNGFGTLEGQKMSKSKGNVLNFIDAIEE 667
Query: 1269 FSADGMRLCLADSGDSVEDANFVESMADAAVKKFSADGMRLCLADSGDSVEDANFVESMA 1328
AD +RL ++ S+A+ D++F
Sbjct: 668 NGADVVRL-------------YIMSLAE----------------------HDSDFDWRRK 692
Query: 1329 DAGILR--LYTFIEWVKEILATQSTLRTGSQDSFNDKVFLSEMNLKIKETEDHYTKMLFK 1386
+ G LR + F E + + + +D D+ L +N IKET + + +
Sbjct: 693 EVGKLRKQIERFYELISQFAEYEVKGNVELKDI--DRWMLHRLNKAIKETTNALEEFRTR 750
Query: 1387 EALRTGFFELQAARDKYRELTAAEGGMHRTLVLR-FVEVQALLLCPVCPHVAEHV 1440
A++ F+ + Y T + VLR +V L+ P PH+ E +
Sbjct: 751 TAVQWAFYSIMNDLRWYLRRTEGRDDEAKRYVLRTLADVWVRLMAPFTPHICEEL 805
Score = 53.5 bits (127), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 23/36 (63%), Positives = 29/36 (80%), Gaps = 2/36 (5%)
Query: 595 CSGKVS--TKLPWDEQWLIESLSDSTIYMAYYTVAH 628
C+ K+ T LPWD +W+IESLSDSTIYMAYYT++
Sbjct: 508 CARKIGLGTPLPWDPEWVIESLSDSTIYMAYYTISR 543
Score = 47.4 bits (111), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 25/62 (40%), Positives = 37/62 (59%), Gaps = 1/62 (1%)
Query: 730 IIGVALKAPVTSHSVIYTLPMLSIREDKGTGIVTSVPSDSPDDYAALVDLKKKPPFREKY 789
+IG ++ PV+ VI LP + D TG+V SVP+ +P D+ AL DLK++ EKY
Sbjct: 291 LIGKYVRNPVSGDEVI-ILPAEFVDPDNATGVVMSVPAHAPFDHVALEDLKRETEILEKY 349
Query: 790 HV 791
+
Sbjct: 350 DI 351
Score = 43.9 bits (102), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 26/96 (27%), Positives = 47/96 (48%), Gaps = 3/96 (3%)
Query: 1442 MNLKIKETEDHYTKMLFKEALRTGFFELQAARDKYRELTAAEGGMHRTLVLR-FVEVQAL 1500
+N IKET + + + A++ F+ + Y T + VLR +V
Sbjct: 733 LNKAIKETTNALEEFRTRTAVQWAFYSIMNDLRWYLRRTEGRDDEAKRYVLRTLADVWVR 792
Query: 1501 LLCPVCPHVAEHVYQLLGKKGSIVKARWPEGGPIDD 1536
L+ P PH+ E +++ LG +G + A+WPE P+++
Sbjct: 793 LMAPFTPHICEELWEKLGGEGFVSLAKWPE--PVEE 826
>pdb|1WKB|A Chain A, Crystal Structure Of Leucyl-Trna Synthetase From The
Archaeon Pyrococcus Horikoshii Reveals A Novel Editing
Domain Orientation
Length = 810
Score = 196 bits (497), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 153/560 (27%), Positives = 236/560 (42%), Gaps = 120/560 (21%)
Query: 659 VPIIQVPEYGNLCAVTVYEKLKIQSQNDKDKLQEAKELVYLKGFYDGIMLVXXXXXXXXX 718
+ +I++ YG+ AV KL I+SQ DK+KL++A + +Y ++ GI V
Sbjct: 362 ISLIKLEGYGDFPAVEEVNKLGIKSQKDKEKLEQATKTIYKAEYHKGIFKVPPYEGKPVQ 421
Query: 719 XXXXXXXXXIDIIGVALKAPVTSHSVIYTLPMLSIREDKGTGIVTSVPSDSPDDYAALVD 778
+ G+A ++Y ++ G V + D
Sbjct: 422 EVKEAIAKEMLEKGIA--------EIMYEFAEKNVISRFGNRAVIKIIHD---------- 463
Query: 779 LKKKPPFREKYHVTDEMCVVALCDQWYLDYGEPTWKAAAEQCLANMNTYHDEVRRNFGAS 838
QW++DYG P WK A + L M + R F A
Sbjct: 464 ------------------------QWFIDYGNPEWKEKARKALERMKILPETRRAQFEAI 499
Query: 839 LNWLHEYACSRTYGLGTKLPWDEQWLIESLSDSTIYMAYYTVAHLLQGGTFRGENGNALN 898
++WL + AC+R GLGT LPWD +W+IESLSDSTIYMAYYT++ + G+
Sbjct: 500 IDWLDKKACARKIGLGTPLPWDPEWVIESLSDSTIYMAYYTISRHINKLRQEGK------ 553
Query: 899 IKAEDLTPEVWDYVFFK------AAPFPPKCRVPKAKLDIMRREFQYWYPVDLRCSGKDL 952
+ E LTPE +DY+F + K +P + M+ EF+YWYP+D RCSGKDL
Sbjct: 554 LDPEKLTPEFFDYIFLEEFSEDKEKELEKKTGIPAEIIHEMKEEFEYWYPLDWRCSGKDL 613
Query: 953 IQNHLTFFIYIHTAIWGDEPEMWPRGIRANGHLLLNSAKDLIQNHLTFFIYKLFSDLIQN 1012
I NHLTFFI+ H AI+ + E WP+GI NG L K
Sbjct: 614 IPNHLTFFIFNHVAIFRE--EHWPKGIAVNGFGTLEGQK--------------------- 650
Query: 1013 HLTFFIYIHTAIWGDEPEMWPRGIRANGHLLLNSAKMSKSEGNFLTLTEAVKKFSADGMR 1072
++ G++L NF+ +A+++ AD +R
Sbjct: 651 ----------------------MSKSKGNVL-----------NFI---DAIEENGADVVR 674
Query: 1073 LCLADSGDSVEDANFVESMADAGILR--LYTFIEWVKEILATQSTLRTGSQDSFNDKVFL 1130
L + + D++F + G LR + F E + + + +D D+ L
Sbjct: 675 LYIMSLAEH--DSDFDWRRKEVGKLRKQIERFYELISQFAEYEVKGNVELKDI--DRWML 730
Query: 1131 SEMNLKIKETEDHYTKMLFKEALRTGFFELQAARDKYRELTAAEGGMHRTLVLR-FVEVQ 1189
+N IKET + + + A++ F+ + Y T + VLR +V
Sbjct: 731 HRLNKAIKETTNALEEFRTRTAVQWAFYSIMNDLRWYLRRTEGRDDEAKRYVLRTLADVW 790
Query: 1190 ALLLCPVCPHVAEHVYQLLG 1209
L+ P PH+ E +++ LG
Sbjct: 791 VRLMAPFTPHICEELWEKLG 810
Score = 142 bits (358), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 77/200 (38%), Positives = 107/200 (53%), Gaps = 18/200 (9%)
Query: 406 CTERSARNMAYQGFTEVEGKINVLLRLTGQVCIRSGDECVVALC-DQWYLDYGEPTWKAA 464
E A+ M +G E+ + V R G+ V+ + DQW++DYG P WK
Sbjct: 423 VKEAIAKEMLEKGIAEIMYEF-----AEKNVISRFGNRAVIKIIHDQWFIDYGNPEWKEK 477
Query: 465 AEQCLANMNTYHDEVRRNFGASLNWLHEYACSRTYGLGTKLPWDEQWLIESLSDSTIYMA 524
A + L M + R F A ++WL + AC+R GLGT LPWD +W+IESLSDSTIYMA
Sbjct: 478 ARKALERMKILPETRRAQFEAIIDWLDKKACARKIGLGTPLPWDPEWVIESLSDSTIYMA 537
Query: 525 YYTVAHLLQGGTFRGENGNALNIKAEDLTPEVWDYVFFKS------APFPPKCRVPKAKL 578
YYT++ + G+ + E LTPE +DY+F + K +P +
Sbjct: 538 YYTISRHINKLRQEGK------LDPEKLTPEFFDYIFLEEFSEDKEKELEKKTGIPAEII 591
Query: 579 DIMRREFQYWYPVDLRCSGK 598
M+ EF+YWYP+D RCSGK
Sbjct: 592 HEMKEEFEYWYPLDWRCSGK 611
Score = 119 bits (298), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 79/286 (27%), Positives = 122/286 (42%), Gaps = 56/286 (19%)
Query: 72 KIYEETVGDAVRSSPDDKXXXXXXXXYMNGRLHLGHTFSLSKCEFSVRFNRLKGKRVLFP 131
KI+E + D + + K Y++G LH+GH + + + RF R++G VLFP
Sbjct: 21 KIFEPNIRDKPK---EKKFYITVAFPYLSGHLHVGHARTYTIPDVIARFKRMQGYNVLFP 77
Query: 132 FGFHCTGMPIKACADKLKREMESFGFPPQFPSEDTEPQTXXXXXXXXXXXXXXXXXXXXX 191
+H TG PI A+++K + +P+T
Sbjct: 78 MAWHITGSPIVGIAERIK---------------NRDPKTI-------------------- 102
Query: 192 XXXXXXXYQWQIMQSLGLEDDEIRKFADASHWLDHFPPLAVQDLRSIGIHVDWRRTFITT 251
W + ++ + F D + + +F A + G VDW R F TT
Sbjct: 103 ---------WIYRDVYKVPEEILWTFEDPINIVKYFMKAAKETFIRAGFSVDWSREFYTT 153
Query: 252 DSNPFFDSFVRWQFMRLRDRHKIKYGKRYTVFSPRDNQPCMDHDRASGEGVGPQEYTLIK 311
P F F+ WQF +L+++ I G + P P DHD GE V +Y +IK
Sbjct: 154 SLFPPFSKFIEWQFWKLKEKGYIVKGAHRVRWDPVVGTPLGDHDLMEGEDVPILDYIIIK 213
Query: 312 MRLVKPYPAKLCCLDSKPVFLVAATLRPETMYGQTNAWVRPDMAYI 357
L + + + ++L AATLRPET+YG TN WV P+ Y+
Sbjct: 214 FELRE---------NGEVIYLPAATLRPETVYGVTNMWVNPNATYV 250
Score = 81.3 bits (199), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 66/235 (28%), Positives = 102/235 (43%), Gaps = 42/235 (17%)
Query: 1209 GKDLIQNHLTFFIYIHTAIWGDEPEMWPRGIRANGHLLLNSAKMSKSEGNFLTLTEAVKK 1268
GKDLI NHLTFFI+ H AI+ +E WP+GI NG L KMSKS+GN L +A+++
Sbjct: 610 GKDLIPNHLTFFIFNHVAIFREE--HWPKGIAVNGFGTLEGQKMSKSKGNVLNFIDAIEE 667
Query: 1269 FSADGMRLCLADSGDSVEDANFVESMADAAVKKFSADGMRLCLADSGDSVEDANFVESMA 1328
AD +RL ++ S+A+ D++F
Sbjct: 668 NGADVVRL-------------YIMSLAE----------------------HDSDFDWRRK 692
Query: 1329 DAGILR--LYTFIEWVKEILATQSTLRTGSQDSFNDKVFLSEMNLKIKETEDHYTKMLFK 1386
+ G LR + F E + + + +D D+ L +N IKET + + +
Sbjct: 693 EVGKLRKQIERFYELISQFAEYEVKGNVELKDI--DRWMLHRLNKAIKETTNALEEFRTR 750
Query: 1387 EALRTGFFELQAARDKYRELTAAEGGMHRTLVLR-FVEVQALLLCPVCPHVAEHV 1440
A++ F+ + Y T + VLR +V L+ P PH+ E +
Sbjct: 751 TAVQWAFYSIMNDLRWYLRRTEGRDDEAKRYVLRTLADVWVRLMAPFTPHICEEL 805
Score = 53.1 bits (126), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 23/35 (65%), Positives = 29/35 (82%), Gaps = 2/35 (5%)
Query: 595 CSGKVS--TKLPWDEQWLIESLSDSTIYMAYYTVA 627
C+ K+ T LPWD +W+IESLSDSTIYMAYYT++
Sbjct: 508 CARKIGLGTPLPWDPEWVIESLSDSTIYMAYYTIS 542
Score = 47.4 bits (111), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 25/62 (40%), Positives = 37/62 (59%), Gaps = 1/62 (1%)
Query: 730 IIGVALKAPVTSHSVIYTLPMLSIREDKGTGIVTSVPSDSPDDYAALVDLKKKPPFREKY 789
+IG ++ PV+ VI LP + D TG+V SVP+ +P D+ AL DLK++ EKY
Sbjct: 291 LIGKYVRNPVSGDEVI-ILPAEFVDPDNATGVVMSVPAHAPFDHVALEDLKRETEILEKY 349
Query: 790 HV 791
+
Sbjct: 350 DI 351
>pdb|2WFD|A Chain A, Structure Of The Human Cytosolic Leucyl-Trna Synthetase
Editing Domain
pdb|2WFD|B Chain B, Structure Of The Human Cytosolic Leucyl-Trna Synthetase
Editing Domain
Length = 252
Score = 116 bits (291), Expect = 8e-26, Method: Composition-based stats.
Identities = 56/133 (42%), Positives = 76/133 (57%), Gaps = 37/133 (27%)
Query: 303 GPQEYTLIKMRLVKPYPAKLCCLDSKPVFLVAATLRPETMYGQTNAWVRPDMAYIALSCL 362
GPQEYTL+K+++++PYP+KL S L
Sbjct: 3 GPQEYTLLKLKVLEPYPSKL-------------------------------------SGL 25
Query: 363 DSKPVFLVAATLRPETMYGQTNAWVRPDMAYIAFTTATGEVFVCTERSARNMAYQGFTEV 422
K +FLVAATLRPET +GQTN WVRPD YI F T G++F+CT+++ARN +YQGFT+
Sbjct: 26 KGKNIFLVAATLRPETXFGQTNCWVRPDXKYIGFETVNGDIFICTQKAARNXSYQGFTKD 85
Query: 423 EGKINVLLRLTGQ 435
G + V+ L G+
Sbjct: 86 NGVVPVVKELXGE 98
Score = 95.5 bits (236), Expect = 2e-19, Method: Composition-based stats.
Identities = 43/66 (65%), Positives = 53/66 (80%)
Query: 729 DIIGVALKAPVTSHSVIYTLPMLSIREDKGTGIVTSVPSDSPDDYAALVDLKKKPPFREK 788
+I+G +L AP+TS+ VIY LP L+I+EDKGTG+VTSVPSDSPDD AAL DLKKK R K
Sbjct: 99 EILGASLSAPLTSYKVIYVLPXLTIKEDKGTGVVTSVPSDSPDDIAALRDLKKKQALRAK 158
Query: 789 YHVTDE 794
Y + D+
Sbjct: 159 YGIRDD 164
Score = 90.5 bits (223), Expect = 6e-18, Method: Composition-based stats.
Identities = 38/57 (66%), Positives = 51/57 (89%)
Query: 653 VLPYDPVPIIQVPEYGNLCAVTVYEKLKIQSQNDKDKLQEAKELVYLKGFYDGIMLV 709
VLP++PVP+I++P +GNL AVT+ ++LKIQSQND++KL EAKE +YLKGFY+GI LV
Sbjct: 166 VLPFEPVPVIEIPGFGNLSAVTICDELKIQSQNDREKLAEAKEKIYLKGFYEGIXLV 222
>pdb|2WFE|A Chain A, Structure Of The Candida Albicans Cytosolic Leucyl-Trna
Synthetase Editing Domain
pdb|2WFE|B Chain B, Structure Of The Candida Albicans Cytosolic Leucyl-Trna
Synthetase Editing Domain
pdb|2WFE|C Chain C, Structure Of The Candida Albicans Cytosolic Leucyl-Trna
Synthetase Editing Domain
pdb|2WFE|D Chain D, Structure Of The Candida Albicans Cytosolic Leucyl-Trna
Synthetase Editing Domain
pdb|2WFG|A Chain A, Structure Of The Candida Albicans Cytosolic Leucyl-Trna
Synthetase Editing Domain Bound To A Benzoxaborole-Amp
Adduct
Length = 261
Score = 72.4 bits (176), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 34/74 (45%), Positives = 45/74 (60%)
Query: 367 VFLVAATLRPETMYGQTNAWVRPDMAYIAFTTATGEVFVCTERSARNMAYQGFTEVEGKI 426
V+LVAATLRPETMYGQT +V P + Y F G+ F+ TER+ +NM++Q T G
Sbjct: 33 VYLVAATLRPETMYGQTCCFVSPKIDYGVFDAGNGDYFITTERAFKNMSFQNLTPKRGYY 92
Query: 427 NVLLRLTGQVCIRS 440
L + G+ I S
Sbjct: 93 KPLFTINGKTLIGS 106
Score = 54.7 bits (130), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 25/56 (44%), Positives = 34/56 (60%)
Query: 730 IIGVALKAPVTSHSVIYTLPMLSIREDKGTGIVTSVPSDSPDDYAALVDLKKKPPF 785
+IG + AP + + LPM ++ KGTG+VT VPSDSPDD+ DL KP +
Sbjct: 103 LIGSRIDAPYAVNKNLRVLPMETVLATKGTGVVTCVPSDSPDDFVTTRDLANKPEY 158
Score = 53.5 bits (127), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 26/53 (49%), Positives = 34/53 (64%)
Query: 657 DPVPIIQVPEYGNLCAVTVYEKLKIQSQNDKDKLQEAKELVYLKGFYDGIMLV 709
D VPI+ +YG+ CA + LKIQS D +L AKEL Y +GFY+G ML+
Sbjct: 169 DIVPIVHTEKYGDKCAEFLVNDLKIQSPKDSVQLANAKELAYKEGFYNGTMLI 221
>pdb|3PZ6|A Chain A, The Crystal Structure Of Glleurs-Cp1
pdb|3PZ6|B Chain B, The Crystal Structure Of Glleurs-Cp1
pdb|3PZ6|C Chain C, The Crystal Structure Of Glleurs-Cp1
pdb|3PZ6|D Chain D, The Crystal Structure Of Glleurs-Cp1
pdb|3PZ6|E Chain E, The Crystal Structure Of Glleurs-Cp1
pdb|3PZ6|F Chain F, The Crystal Structure Of Glleurs-Cp1
Length = 311
Score = 67.8 bits (164), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 49/150 (32%), Positives = 74/150 (49%), Gaps = 13/150 (8%)
Query: 297 ASGEGVGPQEYTLIKMRLVKPYPAKLCCLDSKPVFL----------VAATLRPETMYGQT 346
SGEGV PQEY IK+ L+ Y L + +A L + +
Sbjct: 1 GSGEGVQPQEYIGIKLELIN-YTTLLEEQREQQQEGEEEGDGMDDSLAEKLNIKLPRFYS 59
Query: 347 NAWVRPDMAYIALSCLDSKPVFLVAATLRPETMYGQTNAWVRPDMAYIAFTTATGEVFVC 406
N + + + +D+ V+L+AATLRPETM GQTN WV P Y A+ EV +
Sbjct: 60 NPKNKAIFDQLWENQVDNAKVYLLAATLRPETMVGQTNCWVLPTGRYGAYYINKDEVIIV 119
Query: 407 TERSARNMAYQGFTEVE--GKINVLLRLTG 434
+E +A NMA+QG + G+++ + ++G
Sbjct: 120 SEHAAVNMAHQGLNNNKPFGELDFISEISG 149
Score = 63.5 bits (153), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 31/64 (48%), Positives = 45/64 (70%), Gaps = 1/64 (1%)
Query: 729 DIIGVALKAPVTSHSVIYTLPMLSIREDKGTGIVTSVPSDSPDDYAALVD-LKKKPPFRE 787
D++ ++AP++ + I+ LP+ +I+ DKGTGIVTSVPSD+PDDYA D L+ + E
Sbjct: 151 DLLLATVRAPLSPYEQIFVLPLETIKMDKGTGIVTSVPSDAPDDYACYKDILENRNGIAE 210
Query: 788 KYHV 791
KY V
Sbjct: 211 KYGV 214
Score = 60.1 bits (144), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 29/73 (39%), Positives = 42/73 (57%)
Query: 635 FRGENGNALNINCVIVFQVLPYDPVPIIQVPEYGNLCAVTVYEKLKIQSQNDKDKLQEAK 694
NG A + + PY P+PII++P+ G L AV + E+ + S +D+ KL + K
Sbjct: 202 LENRNGIAEKYGVDVGLMLEPYSPLPIIEIPDIGTLSAVRLCEESNVSSLHDRAKLTQIK 261
Query: 695 ELVYLKGFYDGIM 707
E+ Y KGFY GIM
Sbjct: 262 EICYTKGFYTGIM 274
>pdb|3ZIU|A Chain A, Crystal Structure Of Mycoplasma Mobile Leucyl-trna
Synthetase With Leu-ams In The Active Site
pdb|3ZIU|B Chain B, Crystal Structure Of Mycoplasma Mobile Leucyl-trna
Synthetase With Leu-ams In The Active Site
Length = 637
Score = 44.7 bits (104), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 40/169 (23%), Positives = 69/169 (40%), Gaps = 15/169 (8%)
Query: 1045 NSAKMSKSEGNFLTLTEAVKKFSADGMRLCLADSGDSVEDANFVESMADAGILRLYTFIE 1104
+ KMSKS GN + E ++ F AD +R+ G + + ES +A Y +I
Sbjct: 407 DGQKMSKSLGNVVNPDEIIQNFGADTLRVYEMFMGPLTDTKKWNESTVEA----TYKWIL 462
Query: 1105 WVKEILATQSTLRTGSQDSFNDKVFLSEMNLKIKETEDHYTKMLFKEALRTGFFELQAAR 1164
VK I ++ D F+SE NL IKE + F + + +
Sbjct: 463 RVKRIFQIFIEDKSKINSLHKDDQFISEHNLLIKEITQDIEDLKFNIMISKLMIFVNSLY 522
Query: 1165 DKYRELTAAEGGMHRTLVLRFVEVQALLLCPVCPHVAEHVYQLLGKDLI 1213
K + L+ ++ A++ + PH++E + + LG+ I
Sbjct: 523 KK-----------EKIYSLKPLKDFAIMFSTIAPHISEELLESLGEKEI 560
Score = 40.0 bits (92), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 29/122 (23%), Positives = 50/122 (40%), Gaps = 16/122 (13%)
Query: 59 HLGHTFSLSKFREKIYEETVGDAVRSSPDDKXXXXXXXXYMNGR-LHLGHTFSLSKCEFS 117
H+ + + K + +E+T + DK Y +G LH+GH + +
Sbjct: 7 HMYNHNEIEKKWQTRWEKTKAFKTTNKSKDKFYALDMFPYPSGSGLHVGHPEGYTATDII 66
Query: 118 VRFNRLKGKRVLFPFGFHCTGMPIKACA---------------DKLKREMESFGFPPQFP 162
R+ RLKG VL P G+ G+P + A + +R+++S GF +
Sbjct: 67 SRYKRLKGFDVLHPIGWDAFGLPAEQYALSSGKHPQPFTLKNIENFRRQLKSLGFSFDYE 126
Query: 163 SE 164
E
Sbjct: 127 KE 128
Score = 31.2 bits (69), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 17/53 (32%), Positives = 26/53 (49%)
Query: 1248 NSAKMSKSEGNFLTLTEAVKKFSADGMRLCLADSGDSVEDANFVESMADAAVK 1300
+ KMSKS GN + E ++ F AD +R+ G + + ES +A K
Sbjct: 407 DGQKMSKSLGNVVNPDEIIQNFGADTLRVYEMFMGPLTDTKKWNESTVEATYK 459
>pdb|4AQ7|A Chain A, Ternary Complex Of E. Coli Leucyl-Trna Synthetase,
Trna(Leu) And Leucyl-Adenylate Analogue In The
Aminoacylation Conformation
pdb|4AQ7|D Chain D, Ternary Complex Of E. Coli Leucyl-Trna Synthetase,
Trna(Leu) And Leucyl-Adenylate Analogue In The
Aminoacylation Conformation
pdb|4ARC|A Chain A, Ternary Complex Of E. Coli Leucyl-Trna Synthetase,
Trna(Leu) And Leucine In The Editing Conformation
pdb|4ARI|A Chain A, Ternary Complex Of E. Coli Leucyl-Trna Synthetase,
Trna(Leu) And The Benzoxaborole An2679 In The Editing
Conformation
pdb|4AS1|A Chain A, Ternary Complex Of E. Coli Leucyl-Trna Synthetase,
Trna(Leu) And The Benzoxaborole An2679 In The Editing
Conformation
pdb|3ZGZ|A Chain A, Ternary Complex Of E. Coli Leucyl-trna Synthetase,
Trna(leu) And Toxic Moiety From Agrocin 84 (tm84) In
Aminoacylation- Like Conformation
pdb|3ZGZ|D Chain D, Ternary Complex Of E. Coli Leucyl-trna Synthetase,
Trna(leu) And Toxic Moiety From Agrocin 84 (tm84) In
Aminoacylation- Like Conformation
Length = 880
Score = 44.7 bits (104), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 29/50 (58%)
Query: 98 YMNGRLHLGHTFSLSKCEFSVRFNRLKGKRVLFPFGFHCTGMPIKACADK 147
Y +GRLH+GH + + + R+ R+ GK VL P G+ G+P + A K
Sbjct: 63 YPSGRLHMGHVRNYTIGDVIARYQRMLGKNVLQPIGWDAFGLPAEGAAVK 112
>pdb|1P7P|A Chain A, Methionyl-trna Synthetase From Escherichia Coli Complexed
With Methionine Phosphonate
pdb|1PFU|A Chain A, Methionyl-Trna Synthetase From Escherichia Coli Complexed
With Methionine Phosphinate
pdb|1PFV|A Chain A, Methionyl-Trna Synthetase From Escherichia Coli Complexed
With Difluoromethionine
pdb|1PFW|A Chain A, Methionyl-Trna Synthetase From Escherichia Coli Complexed
With Trifluoromethionine
pdb|1PFY|A Chain A, Methionyl-Trna Synthetase From Escherichia Coli Complexed
With Methionyl Sulphamoyl Adenosine
pdb|1PG0|A Chain A, Methionyl-Trna Synthetase From Escherichia Coli Complexed
With Methioninyl Adenylate
pdb|1PG2|A Chain A, Methionyl-Trna Synthetase From Escherichia Coli Complexed
With Methionine And Adenosine
Length = 551
Score = 42.4 bits (98), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/79 (30%), Positives = 38/79 (48%), Gaps = 18/79 (22%)
Query: 1204 VYQLLGKDLIQNHLTFFIYIHTAIWGDEPEMW-------PRGIRANGHLLLNSAKMSKSE 1256
+Y +GKD++ Y H+ W P M P + +G++ +N AKMSKS
Sbjct: 289 LYHFIGKDIV--------YFHSLFW---PAMLEGSNFRKPSNLFVHGYVTVNGAKMSKSR 337
Query: 1257 GNFLTLTEAVKKFSADGMR 1275
G F+ + + F AD +R
Sbjct: 338 GTFIKASTWLNHFDADSLR 356
Score = 38.5 bits (88), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 31/62 (50%), Gaps = 10/62 (16%)
Query: 1018 IYIHTAIWGDEPEMW-------PRGIRANGHLLLNSAKMSKSEGNFLTLTEAVKKFSADG 1070
+Y H+ W P M P + +G++ +N AKMSKS G F+ + + F AD
Sbjct: 298 VYFHSLFW---PAMLEGSNFRKPSNLFVHGYVTVNGAKMSKSRGTFIKASTWLNHFDADS 354
Query: 1071 MR 1072
+R
Sbjct: 355 LR 356
Score = 37.4 bits (85), Expect = 0.074, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 25/51 (49%)
Query: 98 YMNGRLHLGHTFSLSKCEFSVRFNRLKGKRVLFPFGFHCTGMPIKACADKL 148
Y NG +HLGH + + VR+ R++G V F G PI A +L
Sbjct: 15 YANGSIHLGHMLEHIQADVWVRYQRMRGHEVNFICADDAHGTPIMLKAQQL 65
>pdb|1F4L|A Chain A, Crystal Structure Of The E.Coli Methionyl-Trna Synthetase
Complexed With Methionine
Length = 551
Score = 42.4 bits (98), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/79 (30%), Positives = 38/79 (48%), Gaps = 18/79 (22%)
Query: 1204 VYQLLGKDLIQNHLTFFIYIHTAIWGDEPEMW-------PRGIRANGHLLLNSAKMSKSE 1256
+Y +GKD++ Y H+ W P M P + +G++ +N AKMSKS
Sbjct: 290 LYHFIGKDIV--------YFHSLFW---PAMLEGSNFRKPSNLFVHGYVTVNGAKMSKSR 338
Query: 1257 GNFLTLTEAVKKFSADGMR 1275
G F+ + + F AD +R
Sbjct: 339 GTFIKASTWLNHFDADSLR 357
Score = 38.5 bits (88), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 31/62 (50%), Gaps = 10/62 (16%)
Query: 1018 IYIHTAIWGDEPEMW-------PRGIRANGHLLLNSAKMSKSEGNFLTLTEAVKKFSADG 1070
+Y H+ W P M P + +G++ +N AKMSKS G F+ + + F AD
Sbjct: 299 VYFHSLFW---PAMLEGSNFRKPSNLFVHGYVTVNGAKMSKSRGTFIKASTWLNHFDADS 355
Query: 1071 MR 1072
+R
Sbjct: 356 LR 357
Score = 37.4 bits (85), Expect = 0.071, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 25/51 (49%)
Query: 98 YMNGRLHLGHTFSLSKCEFSVRFNRLKGKRVLFPFGFHCTGMPIKACADKL 148
Y NG +HLGH + + VR+ R++G V F G PI A +L
Sbjct: 16 YANGSIHLGHMLEHIQADVWVRYQRMRGHEVNFICADDAHGTPIMLKAQQL 66
>pdb|3H9C|A Chain A, Structure Of Methionyl-Trna Synthetase: Crystal Form 2
Length = 547
Score = 42.4 bits (98), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/79 (30%), Positives = 38/79 (48%), Gaps = 18/79 (22%)
Query: 1204 VYQLLGKDLIQNHLTFFIYIHTAIWGDEPEMW-------PRGIRANGHLLLNSAKMSKSE 1256
+Y +GKD++ Y H+ W P M P + +G++ +N AKMSKS
Sbjct: 289 LYHFIGKDIV--------YFHSLFW---PAMLEGSNFRKPSNLFVHGYVTVNGAKMSKSR 337
Query: 1257 GNFLTLTEAVKKFSADGMR 1275
G F+ + + F AD +R
Sbjct: 338 GTFIKASTWLNHFDADSLR 356
Score = 38.5 bits (88), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 31/62 (50%), Gaps = 10/62 (16%)
Query: 1018 IYIHTAIWGDEPEMW-------PRGIRANGHLLLNSAKMSKSEGNFLTLTEAVKKFSADG 1070
+Y H+ W P M P + +G++ +N AKMSKS G F+ + + F AD
Sbjct: 298 VYFHSLFW---PAMLEGSNFRKPSNLFVHGYVTVNGAKMSKSRGTFIKASTWLNHFDADS 354
Query: 1071 MR 1072
+R
Sbjct: 355 LR 356
Score = 37.4 bits (85), Expect = 0.076, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 25/51 (49%)
Query: 98 YMNGRLHLGHTFSLSKCEFSVRFNRLKGKRVLFPFGFHCTGMPIKACADKL 148
Y NG +HLGH + + VR+ R++G V F G PI A +L
Sbjct: 15 YANGSIHLGHMLEHIQADVWVRYQRMRGHEVNFICADDAHGTPIMLKAQQL 65
>pdb|1QQT|A Chain A, Methionyl-Trna Synthetase From Escherichia Coli
Length = 551
Score = 42.4 bits (98), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/79 (30%), Positives = 38/79 (48%), Gaps = 18/79 (22%)
Query: 1204 VYQLLGKDLIQNHLTFFIYIHTAIWGDEPEMW-------PRGIRANGHLLLNSAKMSKSE 1256
+Y +GKD++ Y H+ W P M P + +G++ +N AKMSKS
Sbjct: 289 LYHFIGKDIV--------YFHSLFW---PAMLEGSNFRKPSNLFVHGYVTVNGAKMSKSR 337
Query: 1257 GNFLTLTEAVKKFSADGMR 1275
G F+ + + F AD +R
Sbjct: 338 GTFIKASTWLNHFDADSLR 356
Score = 38.5 bits (88), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 31/62 (50%), Gaps = 10/62 (16%)
Query: 1018 IYIHTAIWGDEPEMW-------PRGIRANGHLLLNSAKMSKSEGNFLTLTEAVKKFSADG 1070
+Y H+ W P M P + +G++ +N AKMSKS G F+ + + F AD
Sbjct: 298 VYFHSLFW---PAMLEGSNFRKPSNLFVHGYVTVNGAKMSKSRGTFIKASTWLNHFDADS 354
Query: 1071 MR 1072
+R
Sbjct: 355 LR 356
Score = 37.4 bits (85), Expect = 0.075, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 25/51 (49%)
Query: 98 YMNGRLHLGHTFSLSKCEFSVRFNRLKGKRVLFPFGFHCTGMPIKACADKL 148
Y NG +HLGH + + VR+ R++G V F G PI A +L
Sbjct: 15 YANGSIHLGHMLEHIQADVWVRYQRMRGHEVNFICADDAHGTPIMLKAQQL 65
>pdb|2V0C|A Chain A, Leucyl-Trna Synthetase From Thermus Thermophilus Complexed
With A Sulphamoyl Analogue Of Leucyl-Adenylate In The
Synthetic Site And An Adduct Of Amp With 5-Fluoro-1,3-
Dihydro-1-Hydroxy-2,1-Benzoxaborole (An2690) In The
Editing Site
Length = 878
Score = 41.2 bits (95), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 28/51 (54%)
Query: 98 YMNGRLHLGHTFSLSKCEFSVRFNRLKGKRVLFPFGFHCTGMPIKACADKL 148
Y +G LH+GH + + + RF R++G VL P G+ G+P + A K
Sbjct: 43 YPSGDLHMGHLKNYTMGDVLARFRRMQGYEVLHPMGWDAFGLPAENAALKF 93
Score = 36.2 bits (82), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 41/203 (20%), Positives = 81/203 (39%), Gaps = 6/203 (2%)
Query: 231 AVQDLRSIGIHVDWRRTFITTDSNPFFDSFVRWQFMRLRDRHKIKYGKRYTVFSPRDNQP 290
A + LR +GI DW R T + P + + +W F+++ ++ K + P+ Q
Sbjct: 108 AKESLRLMGILYDWDREVTTCE--PEYYRWNQWIFLKMWEKGLAYRAKGLVNWCPK-CQT 164
Query: 291 CMDHDRASGEGVGPQEYTLIKMRLVKPYPAKLCCLDSKPVFLVAATLRPETMYGQTNAWV 350
+ +++ E T ++ R ++ + ++ + + + PE + AW+
Sbjct: 165 VLANEQVVEGRCWRHEDTPVEKRELEQWYLRITAYAERLLKDLEGLNWPEKVKAMQRAWI 224
Query: 351 RPDMAYIALSCLDSKPVFLVAATLRPETMYGQTNAWVRPDMAY---IAFTTATGEVFVCT 407
L ++ K V + T RP+T++G T + P+ +A EV
Sbjct: 225 GRSEGAEILFPVEGKEVRIPVFTTRPDTLFGATFLVLAPEHPLTLELAAPEKREEVLAYV 284
Query: 408 ERSARNMAYQGFTEVEGKINVLL 430
E + R + E K V L
Sbjct: 285 EAAKRKTEIERQAEGREKTGVFL 307
Score = 35.4 bits (80), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 36/172 (20%), Positives = 71/172 (41%), Gaps = 9/172 (5%)
Query: 1043 LLNSAKMSKSEGNFLTLTEAVKKFSADGMRLCLADSGDSVEDANFVESMADAG---ILRL 1099
L A MSKS+GN + + VK+ AD R+ + + + + E + R+
Sbjct: 632 LWKPAVMSKSKGNGVMVGPFVKEQGADIARITILFAAPPENEMVWTEEGVQGAWRFLNRI 691
Query: 1100 YTFIEWVKEILATQSTLRTGSQDSFNDKVFLSEMNLKIKETEDHYTKMLFKEALRTGFFE 1159
Y + +E L S + D+ +++ +K+ + + F A+ E
Sbjct: 692 YRRVAEDREALLETSGVFQAEALEGKDRELYGKLHETLKKVTEDLEALRFNTAI-AALME 750
Query: 1160 LQAARDKYRELTAAEGGMHRTLVLRFVEVQALLLCPVCPHVAEHVYQLLGKD 1211
A +YR+ ++RT + +++ +L P PH+AE ++ D
Sbjct: 751 FLNALYEYRKDRPVT-PVYRTAIRYYLQ----MLFPFAPHLAEELWHWFWPD 797
>pdb|1OBH|A Chain A, Leucyl-Trna Synthetase From Thermus Thermophilus Complexed
With A Pre-Transfer Editing Substrate Analogue In Both
Synthetic Active Site And Editing Site
pdb|2BTE|A Chain A, Thermus Thermophilus Leucyl-Trna Synthetase Complexed With
With A Trnaleu Transcript In The Post-Editing
Conformation And A Post-Transfer Editing Substrate
Analogue
pdb|2BTE|D Chain D, Thermus Thermophilus Leucyl-Trna Synthetase Complexed With
With A Trnaleu Transcript In The Post-Editing
Conformation And A Post-Transfer Editing Substrate
Analogue
pdb|2BYT|A Chain A, Thermus Thermophilus Leucyl-Trna Synthetase Complexed With
A Trnaleu Transcript In The Post-Editing Conformation
pdb|2BYT|D Chain D, Thermus Thermophilus Leucyl-Trna Synthetase Complexed With
A Trnaleu Transcript In The Post-Editing Conformation
pdb|1H3N|A Chain A, Leucyl-Trna Synthetase From Thermus Thermophilus Complexed
With A Sulphamoyl Analogue Of Leucyl-Adenylate
pdb|1OBC|A Chain A, Leucyl-Trna Synthetase From Thermus Thermophilus Complexed
With A Post-Transfer Editing Substrate Analogue
pdb|2V0G|A Chain A, Leucyl-Trna Synthetase From Thermus Thermophilus Complexed
With A Trna(Leu) Transcript With 5-Fluoro-1,3-Dihydro-1-
Hydroxy-2,1-Benzoxaborole (An2690) Forming An Adduct To
The Ribose Of Adenosine-76 In The Enzyme Editing Site.
pdb|2V0G|D Chain D, Leucyl-Trna Synthetase From Thermus Thermophilus Complexed
With A Trna(Leu) Transcript With 5-Fluoro-1,3-Dihydro-1-
Hydroxy-2,1-Benzoxaborole (An2690) Forming An Adduct To
The Ribose Of Adenosine-76 In The Enzyme Editing Site
Length = 878
Score = 41.2 bits (95), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 28/51 (54%)
Query: 98 YMNGRLHLGHTFSLSKCEFSVRFNRLKGKRVLFPFGFHCTGMPIKACADKL 148
Y +G LH+GH + + + RF R++G VL P G+ G+P + A K
Sbjct: 43 YPSGDLHMGHLKNYTMGDVLARFRRMQGYEVLHPMGWDAFGLPAENAALKF 93
Score = 36.2 bits (82), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 41/203 (20%), Positives = 81/203 (39%), Gaps = 6/203 (2%)
Query: 231 AVQDLRSIGIHVDWRRTFITTDSNPFFDSFVRWQFMRLRDRHKIKYGKRYTVFSPRDNQP 290
A + LR +GI DW R T + P + + +W F+++ ++ K + P+ Q
Sbjct: 108 AKESLRLMGILYDWDREVTTCE--PEYYRWNQWIFLKMWEKGLAYRAKGLVNWCPK-CQT 164
Query: 291 CMDHDRASGEGVGPQEYTLIKMRLVKPYPAKLCCLDSKPVFLVAATLRPETMYGQTNAWV 350
+ +++ E T ++ R ++ + ++ + + + PE + AW+
Sbjct: 165 VLANEQVVEGRCWRHEDTPVEKRELEQWYLRITAYAERLLKDLEGLNWPEKVKAMQRAWI 224
Query: 351 RPDMAYIALSCLDSKPVFLVAATLRPETMYGQTNAWVRPDMAY---IAFTTATGEVFVCT 407
L ++ K V + T RP+T++G T + P+ +A EV
Sbjct: 225 GRSEGAEILFPVEGKEVRIPVFTTRPDTLFGATFLVLAPEHPLTLELAAPEKREEVLAYV 284
Query: 408 ERSARNMAYQGFTEVEGKINVLL 430
E + R + E K V L
Sbjct: 285 EAAKRKTEIERQAEGREKTGVFL 307
Score = 35.4 bits (80), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 36/172 (20%), Positives = 71/172 (41%), Gaps = 9/172 (5%)
Query: 1043 LLNSAKMSKSEGNFLTLTEAVKKFSADGMRLCLADSGDSVEDANFVESMADAG---ILRL 1099
L A MSKS+GN + + VK+ AD R+ + + + + E + R+
Sbjct: 632 LWKPAVMSKSKGNGVMVGPFVKEQGADIARITILFAAPPENEMVWTEEGVQGAWRFLNRI 691
Query: 1100 YTFIEWVKEILATQSTLRTGSQDSFNDKVFLSEMNLKIKETEDHYTKMLFKEALRTGFFE 1159
Y + +E L S + D+ +++ +K+ + + F A+ E
Sbjct: 692 YRRVAEDREALLETSGVFQAEALEGKDRELYGKLHETLKKVTEDLEALRFNTAI-AALME 750
Query: 1160 LQAARDKYRELTAAEGGMHRTLVLRFVEVQALLLCPVCPHVAEHVYQLLGKD 1211
A +YR+ ++RT + +++ +L P PH+AE ++ D
Sbjct: 751 FLNALYEYRKDRPVT-PVYRTAIRYYLQ----MLFPFAPHLAEELWHWFWPD 797
>pdb|1LI5|A Chain A, Crystal Structure Of Cysteinyl-Trna Synthetase
pdb|1LI5|B Chain B, Crystal Structure Of Cysteinyl-Trna Synthetase
pdb|1LI7|A Chain A, Crystal Structure Of Cysteinyl-Trna Synthetase With Cysteine
Substrate Bound
pdb|1LI7|B Chain B, Crystal Structure Of Cysteinyl-Trna Synthetase With Cysteine
Substrate Bound
pdb|1U0B|B Chain B, Crystal Structure Of Cysteinyl-Trna Synthetase Binary
Complex With Trnacys
Length = 461
Score = 40.0 bits (92), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 29/93 (31%), Positives = 50/93 (53%), Gaps = 6/93 (6%)
Query: 1242 NGHLLLNSAKMSKSEGNFLTLTEAVKKFSADGMRLCLADSGDSVEDANFVE---SMADAA 1298
+G ++++ KMSKS GNF T+ + +K + A+ +R L SG N+ E A AA
Sbjct: 257 SGMVMVDREKMSKSLGNFFTVRDVLKYYDAETVRYFLM-SGHYRSQLNYSEENLKQARAA 315
Query: 1299 VKKF--SADGMRLCLADSGDSVEDANFVESMAD 1329
+++ + G +A +G +A F+E+M D
Sbjct: 316 LERLYTALRGTDKTVAPAGGEAFEARFIEAMDD 348
Score = 37.7 bits (86), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 25/76 (32%), Positives = 41/76 (53%), Gaps = 4/76 (5%)
Query: 1039 NGHLLLNSAKMSKSEGNFLTLTEAVKKFSADGMRLCLADSGDSVEDANFVE---SMADAG 1095
+G ++++ KMSKS GNF T+ + +K + A+ +R L SG N+ E A A
Sbjct: 257 SGMVMVDREKMSKSLGNFFTVRDVLKYYDAETVRYFLM-SGHYRSQLNYSEENLKQARAA 315
Query: 1096 ILRLYTFIEWVKEILA 1111
+ RLYT + + +A
Sbjct: 316 LERLYTALRGTDKTVA 331
>pdb|1GAX|A Chain A, Crystal Structure Of Thermus Thermophilus Valyl-Trna
Synthetase Complexed With Trna(Val) And Valyl-Adenylate
Analogue
pdb|1GAX|B Chain B, Crystal Structure Of Thermus Thermophilus Valyl-Trna
Synthetase Complexed With Trna(Val) And Valyl-Adenylate
Analogue
pdb|1IVS|A Chain A, Crystal Structure Of Thermus Thermophilus Valyl-Trna
Synthetase Complexed With Trna(Val) And Valyl-Adenylate
Analogue
pdb|1IVS|B Chain B, Crystal Structure Of Thermus Thermophilus Valyl-Trna
Synthetase Complexed With Trna(Val) And Valyl-Adenylate
Analogue
pdb|1IYW|A Chain A, Preliminary Structure Of Thermus Thermophilus Ligand-Free
Valyl-Trna Synthetase
pdb|1IYW|B Chain B, Preliminary Structure Of Thermus Thermophilus Ligand-Free
Valyl-Trna Synthetase
Length = 862
Score = 38.9 bits (89), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 47/178 (26%), Positives = 78/178 (43%), Gaps = 21/178 (11%)
Query: 1048 KMSKSEGNFLTLTEAVKKFSADGMRLC---LADSGDSVE-DANFVESMADAGILRLYTFI 1103
KMSKS+GN + E V+++ AD +R LA G + D ++E MA +LY
Sbjct: 528 KMSKSKGNVIDPLEMVERYGADALRFALIYLATGGQDIRLDLRWLE-MARNFANKLYNAA 586
Query: 1104 EWVKEILATQSTLRTGSQDSFNDKVFLSEMNLKIKETEDHYTKMLFKEALRTGF------ 1157
+V +L+ + + D+ S ++ ++E Y + +A R +
Sbjct: 587 RFV--LLSREGFQAKEDTPTLADRFMRSRLSRGVEEITALYEALDLAQAAREVYELVWSE 644
Query: 1158 ---FELQAARDKYRELTAAEGGMHRTLVLRFVEVQALLLCPVCPHVAEHVYQ-LLGKD 1211
+ L+AA+ L A RTL + V LL P+ P + +YQ L GK+
Sbjct: 645 FCDWYLEAAKPA---LKAGNAHTLRTLE-EVLAVLLKLLHPMMPFLTSELYQALTGKE 698
Score = 33.5 bits (75), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 27/99 (27%), Positives = 44/99 (44%), Gaps = 9/99 (9%)
Query: 1251 KMSKSEGNFLTLTEAVKKFSADGMRLC---LADSGDSVE-DANFVESMADAAVKKFSADG 1306
KMSKS+GN + E V+++ AD +R LA G + D ++E + A K ++A
Sbjct: 528 KMSKSKGNVIDPLEMVERYGADALRFALIYLATGGQDIRLDLRWLEMARNFANKLYNAAR 587
Query: 1307 MRLCLADSGDSVEDA-----NFVESMADAGILRLYTFIE 1340
L + + ED F+ S G+ + E
Sbjct: 588 FVLLSREGFQAKEDTPTLADRFMRSRLSRGVEEITALYE 626
Score = 32.3 bits (72), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 25/53 (47%)
Query: 1501 LLCPVCPHVAEHVYQLLGKKGSIVKARWPEGGPIDDILVRSSSYLMEAAHAFR 1553
LL P+ P + +YQ L K + WPE G D+ R+ L +A A R
Sbjct: 678 LLHPMMPFLTSELYQALTGKEELALEAWPEPGGRDEEAERAFEALKQAVTAVR 730
>pdb|3H97|A Chain A, Structure Of A Mutant Methionyl-trna Synthetase With
Modified Specificity
pdb|3H99|A Chain A, Structure Of A Mutant Methionyl-Trna Synthetase With
Modified Specificity Complexed With Methionine
pdb|3H9B|A Chain A, Structure Of A Mutant Methionyl-Trna Synthetase With
Modified Specificity Complexed With Azidonorleucine
Length = 560
Score = 38.1 bits (87), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 23/79 (29%), Positives = 37/79 (46%), Gaps = 18/79 (22%)
Query: 1204 VYQLLGKDLIQNHLTFFIYIHTAIWGDEPEMW-------PRGIRANGHLLLNSAKMSKSE 1256
+Y +GKD++ Y + W P M P + +G++ +N AKMSKS
Sbjct: 302 LYHFIGKDIV--------YFLSLFW---PAMLEGSNFRKPSNLFVHGYVTVNGAKMSKSR 350
Query: 1257 GNFLTLTEAVKKFSADGMR 1275
G F+ + + F AD +R
Sbjct: 351 GTFIKASTWLNHFDADSLR 369
Score = 37.0 bits (84), Expect = 0.082, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 25/51 (49%)
Query: 98 YMNGRLHLGHTFSLSKCEFSVRFNRLKGKRVLFPFGFHCTGMPIKACADKL 148
Y NG +HLGH + + VR+ R++G V F G PI A +L
Sbjct: 28 YANGSIHLGHMLEHIQADVWVRYQRMRGHEVNFICADDAHGTPIMLKAQQL 78
Score = 35.8 bits (81), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 15/40 (37%), Positives = 24/40 (60%)
Query: 1033 PRGIRANGHLLLNSAKMSKSEGNFLTLTEAVKKFSADGMR 1072
P + +G++ +N AKMSKS G F+ + + F AD +R
Sbjct: 330 PSNLFVHGYVTVNGAKMSKSRGTFIKASTWLNHFDADSLR 369
>pdb|2X1L|A Chain A, Crystal Structure Of Mycobacterium Smegmatis Methionyl-Trna
Synthetase In Complex With Methionine And Adenosine
pdb|2X1L|B Chain B, Crystal Structure Of Mycobacterium Smegmatis Methionyl-Trna
Synthetase In Complex With Methionine And Adenosine
pdb|2X1L|C Chain C, Crystal Structure Of Mycobacterium Smegmatis Methionyl-Trna
Synthetase In Complex With Methionine And Adenosine
pdb|2X1M|A Chain A, Crystal Structure Of Mycobacterium Smegmatis Methionyl-Trna
Synthetase In Complex With Methionine
Length = 524
Score = 37.0 bits (84), Expect = 0.084, Method: Compositional matrix adjust.
Identities = 30/100 (30%), Positives = 46/100 (46%), Gaps = 7/100 (7%)
Query: 1206 QLLGKDLIQNHLTFFIYIHTAIWGDEPEMWPRGIRANGHLLLNSAKMSKSEGNFLTLTEA 1265
++GKD+I+ H ++ A P+ I A+G LL KMSKS GN +
Sbjct: 269 HMIGKDIIRFHTVYW----PAFLMSAGLPLPKRIFAHGWLLNRGEKMSKSIGNVVDPVNL 324
Query: 1266 VKKFSADGMRLCLADSGDSVEDANFVESMADAAVKKFSAD 1305
V F D +R L +D ++ E DA + + +AD
Sbjct: 325 VDTFGLDQVRYFLLREVPFGQDGSYNE---DAIIGRVNAD 361
Score = 32.7 bits (73), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 52/198 (26%), Positives = 75/198 (37%), Gaps = 21/198 (10%)
Query: 1033 PRGIRANGHLLLNSAKMSKSEGNFLTLTEAVKKFSADGMRLCL------ADSGDSVEDAN 1086
P+ I A+G LL KMSKS GN + V F D +R L G EDA
Sbjct: 295 PKRIFAHGWLLNRGEKMSKSIGNVVDPVNLVDTFGLDQVRYFLLREVPFGQDGSYNEDAI 354
Query: 1087 FVESMADAGILRLYTFIEWVKEILATQSTLRTGSQDSFNDK--VFLSEMNLKIKETEDHY 1144
AD L + ++A F D+ L+ + ++ +H+
Sbjct: 355 IGRVNADLAN-ELGNLAQRSLSMVAKNLGAAVPDPGEFTDEDTALLAAADALLERVREHF 413
Query: 1145 TKMLFKEALRTGFFELQAARDKY--------RELTAAEGGMH-RTLV---LRFVEVQALL 1192
AL + L AA + R+ AAE RT++ L V + +LL
Sbjct: 414 DVPAMHLALEAIWSVLGAANRYFSAQEPWVLRKSDAAEDQQRFRTVLYTTLEVVRIASLL 473
Query: 1193 LCPVCPHVAEHVYQLLGK 1210
L PV P + LLG+
Sbjct: 474 LQPVMPESTAKLLDLLGQ 491
>pdb|4DLP|A Chain A, Crystal Structure Of Methionyl-Trna Synthetase Metrs From
Brucella Melitensis Bound To Selenomethionine
pdb|4DLP|B Chain B, Crystal Structure Of Methionyl-Trna Synthetase Metrs From
Brucella Melitensis Bound To Selenomethionine
pdb|4DLP|C Chain C, Crystal Structure Of Methionyl-Trna Synthetase Metrs From
Brucella Melitensis Bound To Selenomethionine
Length = 536
Score = 36.6 bits (83), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 24/50 (48%)
Query: 98 YMNGRLHLGHTFSLSKCEFSVRFNRLKGKRVLFPFGFHCTGMPIKACADK 147
Y NG+ H+GH + L + RF RL G V F G G+ + A K
Sbjct: 35 YPNGKPHIGHAYELIATDAMARFQRLNGMDVYFLTGTDEHGIKMLQSARK 84
Score = 32.7 bits (73), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 26/100 (26%), Positives = 46/100 (46%), Gaps = 7/100 (7%)
Query: 1206 QLLGKDLIQNHLTFFIYIHTAIWGDEPEMWPRGIRANGHLLLNSAKMSKSEGNFLTLTEA 1265
++GKD+ + H ++ A P+ + A+G L KMSKS GN + E
Sbjct: 280 HIIGKDISRFHAVYW----PAFLMSAQLPLPKRVFAHGFLFNRGEKMSKSVGNVIDPFEL 335
Query: 1266 VKKFSADGMRLCLADSGDSVEDANFVESMADAAVKKFSAD 1305
V+++ D +R L +D ++ +A V + +AD
Sbjct: 336 VERYGLDQLRYFLMREVPFGQDGSYSH---EAIVNRTNAD 372
Score = 32.0 bits (71), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 16/43 (37%), Positives = 24/43 (55%)
Query: 1033 PRGIRANGHLLLNSAKMSKSEGNFLTLTEAVKKFSADGMRLCL 1075
P+ + A+G L KMSKS GN + E V+++ D +R L
Sbjct: 306 PKRVFAHGFLFNRGEKMSKSVGNVIDPFELVERYGLDQLRYFL 348
>pdb|1QU2|A Chain A, Insights Into Editing From An Ile-Trna Synthetase
Structure With Trna(Ile) And Mupirocin
pdb|1QU3|A Chain A, Insights Into Editing From An Ile-Trna Synthetase
Structure With Trna(Ile) And Mupirocin
pdb|1FFY|A Chain A, Insights Into Editing From An Ile-Trna Synthetase
Structure With Trna(Ile) And Mupirocin
Length = 917
Score = 36.2 bits (82), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 16/50 (32%), Positives = 26/50 (52%)
Query: 98 YMNGRLHLGHTFSLSKCEFSVRFNRLKGKRVLFPFGFHCTGMPIKACADK 147
Y NG LH+GH + +F VR+ ++G + G+ G+PI+ K
Sbjct: 58 YANGNLHMGHALNKILKDFIVRYKTMQGFYAPYVPGWDTHGLPIEQALTK 107
>pdb|1A8H|A Chain A, Methionyl-Trna Synthetase From Thermus Thermophilus
Length = 500
Score = 34.3 bits (77), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 66/272 (24%), Positives = 111/272 (40%), Gaps = 44/272 (16%)
Query: 1203 HVYQLLGKDLIQNHLTFFIYIHTAIWGDEPEMWPRGIRANGHLL-LNSAKMSKSEGNFLT 1261
H + L+GKD+++ H F+ T + M+ R + G LL + KMSK+ GN +
Sbjct: 252 HAWHLIGKDILKPHAVFW---PTMLKAAGIPMY-RHLNVGGFLLGPDGRKMSKTLGNVVD 307
Query: 1262 LTEAVKKFSADGMRLCLADSGDSVEDANFVESMADAAVKKFSADGMRLCLADS-GDSVED 1320
++K+ D +R L +D E +A ++ AD LAD G+ V+
Sbjct: 308 PFALLEKYGRDALRYYLLREIPYGQDTPVSE---EALRTRYEAD-----LADDLGNLVQR 359
Query: 1321 ANFVESMADAGILRLYTFIEW-VKEILATQSTLRTGSQDSFNDKVFLSEMNLKIKETEDH 1379
+ L+ F E + E +A + L G+ + + + E+ + E
Sbjct: 360 TRAM----------LFRFAEGRIPEPVAGEE-LAEGTGLAGRLRPLVRELKFHVALEE-- 406
Query: 1380 YTKMLFKEALRTGFFELQAARDKYRELTAAEGGMHRTLVLRFVE---VQALLLCPVCPHV 1436
M + +AL E K EL E R ++ R VE + ++LL P P
Sbjct: 407 --AMAYVKALNRYINE-----KKPWELFKKEPEEARAVLYRVVEGLRIASILLTPAMPDK 459
Query: 1437 AEHVEMNLKIKETEDHYTKMLFKEALRTGFFE 1468
+ L +KE ++ +EA R G E
Sbjct: 460 MAELRRALGLKE------EVRLEEAERWGLAE 485
Score = 34.3 bits (77), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 17/58 (29%), Positives = 27/58 (46%)
Query: 98 YMNGRLHLGHTFSLSKCEFSVRFNRLKGKRVLFPFGFHCTGMPIKACADKLKREMESF 155
Y+N HLGH ++ +F R++RL G R F G G + A + ++F
Sbjct: 13 YVNAEPHLGHAYTTVVADFLARWHRLDGYRTFFLTGTDEHGETVYRAAQAAGEDPKAF 70
>pdb|1WOY|A Chain A, Crystal Structure Of Methionyl Trna Synthetase Y225f Mutant
From Thermus Thermophilus
pdb|2D5B|A Chain A, Crystal Structure Of Thermus Thermophilus Methionyl Trna
Synthetase Y225f Mutant Obtained In The Presence Of
Peg6000
Length = 500
Score = 34.3 bits (77), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 66/272 (24%), Positives = 111/272 (40%), Gaps = 44/272 (16%)
Query: 1203 HVYQLLGKDLIQNHLTFFIYIHTAIWGDEPEMWPRGIRANGHLL-LNSAKMSKSEGNFLT 1261
H + L+GKD+++ H F+ T + M+ R + G LL + KMSK+ GN +
Sbjct: 252 HAWHLIGKDILKPHAVFW---PTMLKAAGIPMY-RHLNVGGFLLGPDGRKMSKTLGNVVD 307
Query: 1262 LTEAVKKFSADGMRLCLADSGDSVEDANFVESMADAAVKKFSADGMRLCLADS-GDSVED 1320
++K+ D +R L +D E +A ++ AD LAD G+ V+
Sbjct: 308 PFALLEKYGRDALRYYLLREIPYGQDTPVSE---EALRTRYEAD-----LADDLGNLVQR 359
Query: 1321 ANFVESMADAGILRLYTFIEW-VKEILATQSTLRTGSQDSFNDKVFLSEMNLKIKETEDH 1379
+ L+ F E + E +A + L G+ + + + E+ + E
Sbjct: 360 TRAM----------LFRFAEGRIPEPVAGEE-LAEGTGLAGRLRPLVRELKFHVALEE-- 406
Query: 1380 YTKMLFKEALRTGFFELQAARDKYRELTAAEGGMHRTLVLRFVE---VQALLLCPVCPHV 1436
M + +AL E K EL E R ++ R VE + ++LL P P
Sbjct: 407 --AMAYVKALNRYINE-----KKPWELFKKEPEEARAVLYRVVEGLRIASILLTPAMPDK 459
Query: 1437 AEHVEMNLKIKETEDHYTKMLFKEALRTGFFE 1468
+ L +KE ++ +EA R G E
Sbjct: 460 MAELRRALGLKE------EVRLEEAERWGLAE 485
Score = 34.3 bits (77), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 17/58 (29%), Positives = 27/58 (46%)
Query: 98 YMNGRLHLGHTFSLSKCEFSVRFNRLKGKRVLFPFGFHCTGMPIKACADKLKREMESF 155
Y+N HLGH ++ +F R++RL G R F G G + A + ++F
Sbjct: 13 YVNAEPHLGHAYTTVVADFLARWHRLDGYRTFFLTGTDEHGETVYRAAQAAGEDPKAF 70
>pdb|2D54|A Chain A, Crystal Structure Of Methionyl Trna Synthetase Y225a
Mutant From Thermus Thermophilus
Length = 502
Score = 34.3 bits (77), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 17/58 (29%), Positives = 27/58 (46%)
Query: 98 YMNGRLHLGHTFSLSKCEFSVRFNRLKGKRVLFPFGFHCTGMPIKACADKLKREMESF 155
Y+N HLGH ++ +F R++RL G R F G G + A + ++F
Sbjct: 13 YVNAEPHLGHAYTTVVADFLARWHRLDGYRTFFLTGTDEHGETVYRAAQAAGEDPKAF 70
Score = 34.3 bits (77), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 66/272 (24%), Positives = 111/272 (40%), Gaps = 44/272 (16%)
Query: 1203 HVYQLLGKDLIQNHLTFFIYIHTAIWGDEPEMWPRGIRANGHLL-LNSAKMSKSEGNFLT 1261
H + L+GKD+++ H F+ T + M+ R + G LL + KMSK+ GN +
Sbjct: 252 HAWHLIGKDILKPHAVFW---PTMLKAAGIPMY-RHLNVGGFLLGPDGRKMSKTLGNVVD 307
Query: 1262 LTEAVKKFSADGMRLCLADSGDSVEDANFVESMADAAVKKFSADGMRLCLADS-GDSVED 1320
++K+ D +R L +D E +A ++ AD LAD G+ V+
Sbjct: 308 PFALLEKYGRDALRYYLLREIPYGQDTPVSE---EALRTRYEAD-----LADDLGNLVQR 359
Query: 1321 ANFVESMADAGILRLYTFIEW-VKEILATQSTLRTGSQDSFNDKVFLSEMNLKIKETEDH 1379
+ L+ F E + E +A + L G+ + + + E+ + E
Sbjct: 360 TRAM----------LFRFAEGRIPEPVAGEE-LAEGTGLAGRLRPLVRELKFHVALEE-- 406
Query: 1380 YTKMLFKEALRTGFFELQAARDKYRELTAAEGGMHRTLVLRFVE---VQALLLCPVCPHV 1436
M + +AL E K EL E R ++ R VE + ++LL P P
Sbjct: 407 --AMAYVKALNRYINE-----KKPWELFKKEPEEARAVLYRVVEGLRIASILLTPAMPDK 459
Query: 1437 AEHVEMNLKIKETEDHYTKMLFKEALRTGFFE 1468
+ L +KE ++ +EA R G E
Sbjct: 460 MAELRRALGLKE------EVRLEEAERWGLAE 485
>pdb|2CSX|A Chain A, Crystal Structure Of Aquifex Aeolicus Methionyl-Trna
Synthetase Complexed With Trna(Met)
pdb|2CSX|B Chain B, Crystal Structure Of Aquifex Aeolicus Methionyl-Trna
Synthetase Complexed With Trna(Met)
pdb|2CT8|A Chain A, Crystal Structure Of Aquifex Aeolicus Methionyl-Trna
Synthetase Complexed With Trna(Met) And
Methionyl-Adenylate Anologue
pdb|2CT8|B Chain B, Crystal Structure Of Aquifex Aeolicus Methionyl-Trna
Synthetase Complexed With Trna(Met) And
Methionyl-Adenylate Anologue
Length = 497
Score = 33.9 bits (76), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 23/85 (27%), Positives = 43/85 (50%), Gaps = 4/85 (4%)
Query: 1206 QLLGKDLIQNHLTFFIYIHTAIWGDEPEMWPRGIRANGHLLLNSAKMSKSEGNFLTLTEA 1265
L+GKD+++ H ++ ++ G E P+ + A+G + KMSK+ GN + E
Sbjct: 254 HLVGKDILRFHTVYWPAFLMSL-GYE---LPKKVFAHGWWTVEGKKMSKTLGNVVDPYEV 309
Query: 1266 VKKFSADGMRLCLADSGDSVEDANF 1290
V+++ D +R L +D +F
Sbjct: 310 VQEYGLDEVRYFLLREVPFGQDGDF 334
>pdb|1JZQ|A Chain A, Isoleucyl-Trna Synthetase Complexed With Isoleucyl-
Adenylate Analogue
pdb|1JZS|A Chain A, Isoleucyl-trna Synthetase Complexed With Mupirocin
pdb|1ILE|A Chain A, Isoleucyl-Trna Synthetase
Length = 821
Score = 33.5 bits (75), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 16/52 (30%), Positives = 27/52 (51%)
Query: 1251 KMSKSEGNFLTLTEAVKKFSADGMRLCLADSGDSVEDANFVESMADAAVKKF 1302
KMSKS+GN + + ++KF AD +R + S D F ++ V+ +
Sbjct: 591 KMSKSKGNVVDPWDIIRKFGADALRWYIYVSAPPEADRRFGPNLVRETVRDY 642
Score = 32.7 bits (73), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 24/93 (25%), Positives = 43/93 (46%), Gaps = 8/93 (8%)
Query: 70 REKIYEETVGDAVRSSPDDKXXXXXXXXYMNGRLHLGHTFSLSKCEFSVRFNRLKGKRVL 129
REKI++++V + + P + NG H+GH + S + R+ ++G
Sbjct: 23 REKIFQKSVENR-KGGP--RYTVYEGPPTANGLPHVGHAQARSYKDLFPRYKTMRGYYAP 79
Query: 130 FPFGFHCTGMPI-----KACADKLKREMESFGF 157
G+ G+P+ K K KRE+E++G
Sbjct: 80 RRAGWDTHGLPVELEVEKKLGLKSKREIEAYGI 112
Score = 31.6 bits (70), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 15/40 (37%), Positives = 22/40 (55%)
Query: 1048 KMSKSEGNFLTLTEAVKKFSADGMRLCLADSGDSVEDANF 1087
KMSKS+GN + + ++KF AD +R + S D F
Sbjct: 591 KMSKSKGNVVDPWDIIRKFGADALRWYIYVSAPPEADRRF 630
>pdb|2O9P|A Chain A, Beta-Glucosidase B From Paenibacillus Polymyxa
pdb|2O9T|A Chain A, Beta-Glucosidase B From Bacillus Polymyxa Complexed With
Glucose
pdb|2Z1S|A Chain A, Beta-Glucosidase B From Paenibacillus Polymyxa Complexed
With Cellotetraose
Length = 454
Score = 32.3 bits (72), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 28/110 (25%), Positives = 44/110 (40%), Gaps = 9/110 (8%)
Query: 451 QWYLDYGEPTWKAAAEQCLANMNTYHDEVRRNFGASLNW---LHEYACSRT--YGLGTKL 505
QW D G T + + + TY + FG +NW ++E C+ YG G
Sbjct: 133 QWIEDEGGWT----QRETIQHFKTYASVIMDRFGERINWWNTINEPYCASILGYGTGEHA 188
Query: 506 PWDEQWLIESLSDSTIYMAYYTVAHLLQGGTFRGENGNALNIKAEDLTPE 555
P E W + I M + ++L + G+ G LN++ D E
Sbjct: 189 PGHENWREAFTAAHHILMCHGIASNLHKEKGLTGKIGITLNMEHVDAASE 238
Score = 32.3 bits (72), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 28/110 (25%), Positives = 44/110 (40%), Gaps = 9/110 (8%)
Query: 803 QWYLDYGEPTWKAAAEQCLANMNTYHDEVRRNFGASLNW---LHEYACSRT--YGLGTKL 857
QW D G T + + + TY + FG +NW ++E C+ YG G
Sbjct: 133 QWIEDEGGWT----QRETIQHFKTYASVIMDRFGERINWWNTINEPYCASILGYGTGEHA 188
Query: 858 PWDEQWLIESLSDSTIYMAYYTVAHLLQGGTFRGENGNALNIKAEDLTPE 907
P E W + I M + ++L + G+ G LN++ D E
Sbjct: 189 PGHENWREAFTAAHHILMCHGIASNLHKEKGLTGKIGITLNMEHVDAASE 238
>pdb|2JIE|A Chain A, Beta-Glucosidase B From Bacillus Polymyxa Complexed With
2- F-Glucose
Length = 454
Score = 32.3 bits (72), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 28/110 (25%), Positives = 44/110 (40%), Gaps = 9/110 (8%)
Query: 451 QWYLDYGEPTWKAAAEQCLANMNTYHDEVRRNFGASLNW---LHEYACSRT--YGLGTKL 505
QW D G T + + + TY + FG +NW ++E C+ YG G
Sbjct: 133 QWIEDEGGWT----QRETIQHFKTYASVIMDRFGERINWWNTINEPYCASILGYGTGEHA 188
Query: 506 PWDEQWLIESLSDSTIYMAYYTVAHLLQGGTFRGENGNALNIKAEDLTPE 555
P E W + I M + ++L + G+ G LN++ D E
Sbjct: 189 PGHENWREAFTAAHHILMCHGIASNLHKEKGLTGKIGITLNMEHVDAASE 238
Score = 32.3 bits (72), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 28/110 (25%), Positives = 44/110 (40%), Gaps = 9/110 (8%)
Query: 803 QWYLDYGEPTWKAAAEQCLANMNTYHDEVRRNFGASLNW---LHEYACSRT--YGLGTKL 857
QW D G T + + + TY + FG +NW ++E C+ YG G
Sbjct: 133 QWIEDEGGWT----QRETIQHFKTYASVIMDRFGERINWWNTINEPYCASILGYGTGEHA 188
Query: 858 PWDEQWLIESLSDSTIYMAYYTVAHLLQGGTFRGENGNALNIKAEDLTPE 907
P E W + I M + ++L + G+ G LN++ D E
Sbjct: 189 PGHENWREAFTAAHHILMCHGIASNLHKEKGLTGKIGITLNMEHVDAASE 238
>pdb|2O9R|A Chain A, Beta-Glucosidase B Complexed With Thiocellobiose
Length = 452
Score = 32.3 bits (72), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 32/133 (24%), Positives = 51/133 (38%), Gaps = 19/133 (14%)
Query: 790 HVTDEMCVVALCD----------QWYLDYGEPTWKAAAEQCLANMNTYHDEVRRNFGASL 839
H+ DE+ + L QW D G T + + + TY + FG +
Sbjct: 108 HLLDEIELAGLIPMLTLYHWDLPQWIEDEGGWT----QRETIQHFKTYASVIMDRFGERI 163
Query: 840 NW---LHEYACSRT--YGLGTKLPWDEQWLIESLSDSTIYMAYYTVAHLLQGGTFRGENG 894
NW ++E C+ YG G P E W + I M + ++L + G+ G
Sbjct: 164 NWWNTINEPYCASILGYGTGEHAPGHENWREAFTAAHHILMCHGIASNLHKEKGLTGKIG 223
Query: 895 NALNIKAEDLTPE 907
LN++ D E
Sbjct: 224 ITLNMEHVDAASE 236
Score = 32.3 bits (72), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 28/110 (25%), Positives = 44/110 (40%), Gaps = 9/110 (8%)
Query: 451 QWYLDYGEPTWKAAAEQCLANMNTYHDEVRRNFGASLNW---LHEYACSRT--YGLGTKL 505
QW D G T + + + TY + FG +NW ++E C+ YG G
Sbjct: 131 QWIEDEGGWT----QRETIQHFKTYASVIMDRFGERINWWNTINEPYCASILGYGTGEHA 186
Query: 506 PWDEQWLIESLSDSTIYMAYYTVAHLLQGGTFRGENGNALNIKAEDLTPE 555
P E W + I M + ++L + G+ G LN++ D E
Sbjct: 187 PGHENWREAFTAAHHILMCHGIASNLHKEKGLTGKIGITLNMEHVDAASE 236
>pdb|1RQG|A Chain A, Methionyl-Trna Synthetase From Pyrococcus Abyssi
Length = 722
Score = 32.0 bits (71), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 21/54 (38%), Positives = 27/54 (50%), Gaps = 1/54 (1%)
Query: 98 YMNGRLHLGH-TFSLSKCEFSVRFNRLKGKRVLFPFGFHCTGMPIKACADKLKR 150
Y NG +H GH + + VR+ RLKG+ V+F G G PI A K R
Sbjct: 12 YANGPIHAGHLAGAYLPADIFVRYLRLKGEDVVFICGTDEHGTPISFRALKEGR 65
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.136 0.425
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 47,869,854
Number of Sequences: 62578
Number of extensions: 2006097
Number of successful extensions: 4110
Number of sequences better than 100.0: 29
Number of HSP's better than 100.0 without gapping: 23
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 3951
Number of HSP's gapped (non-prelim): 140
length of query: 1618
length of database: 14,973,337
effective HSP length: 112
effective length of query: 1506
effective length of database: 7,964,601
effective search space: 11994689106
effective search space used: 11994689106
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 58 (26.9 bits)