Query psy5309
Match_columns 1618
No_of_seqs 677 out of 5465
Neff 7.3
Searched_HMMs 29240
Date Fri Aug 16 23:18:06 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy5309.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/5309hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1wz2_A Leucyl-tRNA synthetase; 100.0 3E-128 1E-132 1291.7 49.6 862 11-1605 5-878 (967)
2 1ffy_A Isoleucyl-tRNA syntheta 100.0 7E-120 2E-124 1197.9 28.1 777 5-1572 13-824 (917)
3 1wkb_A Leucyl-tRNA synthetase; 100.0 4E-117 1E-121 1174.0 47.6 793 10-1209 4-810 (810)
4 1gax_A Valrs, valyl-tRNA synth 100.0 8E-115 3E-119 1139.7 48.1 714 8-1558 5-735 (862)
5 1ile_A Ilers, isoleucyl-tRNA s 100.0 4E-109 1E-113 1094.9 30.7 739 8-1232 6-790 (821)
6 4arc_A Leucine--tRNA ligase; l 100.0 4.5E-95 1.5E-99 947.8 37.8 687 8-1232 23-811 (880)
7 2v0c_A Aminoacyl-tRNA syntheta 100.0 1.2E-93 4.1E-98 943.9 37.7 688 10-1231 4-807 (878)
8 1rqg_A Methionyl-tRNA syntheta 100.0 1.7E-68 5.7E-73 694.6 29.0 319 796-1211 180-522 (722)
9 3u1f_A Methionyl-tRNA syntheta 100.0 4E-68 1.4E-72 678.0 29.2 286 825-1211 195-500 (542)
10 2x1l_A Methionyl-tRNA syntheta 100.0 1.8E-62 6.3E-67 622.6 32.3 276 826-1211 195-492 (524)
11 4dlp_A Aminoacyl-tRNA syntheta 100.0 9.4E-62 3.2E-66 616.4 34.0 275 826-1211 207-499 (536)
12 3h99_A Methionyl-tRNA syntheta 100.0 1.2E-61 4.1E-66 618.5 32.2 303 797-1211 196-522 (560)
13 1wz2_A Leucyl-tRNA synthetase; 100.0 5.8E-62 2E-66 651.9 24.5 672 43-1232 34-824 (967)
14 3kfl_A Methionyl-tRNA syntheta 100.0 4.9E-61 1.7E-65 611.2 30.2 306 801-1212 188-517 (564)
15 2d5b_A Methionyl-tRNA syntheta 100.0 1.9E-60 6.6E-65 601.4 28.3 270 827-1211 182-470 (500)
16 2csx_A Methionyl-tRNA syntheta 100.0 5.8E-60 2E-64 596.0 27.1 266 827-1211 185-469 (497)
17 1gax_A Valrs, valyl-tRNA synth 100.0 5E-57 1.7E-61 592.6 14.5 187 1033-1231 512-708 (862)
18 1ffy_A Isoleucyl-tRNA syntheta 100.0 8.3E-54 2.8E-58 567.1 8.1 190 1033-1231 579-787 (917)
19 3pz6_A Leurs, leucyl-tRNA synt 100.0 3.9E-37 1.3E-41 346.6 9.4 231 326-752 76-310 (311)
20 3tqo_A Cysteinyl-tRNA syntheta 100.0 1.9E-33 6.4E-38 343.2 22.4 170 973-1170 199-374 (462)
21 3sp1_A Cysteinyl-tRNA syntheta 100.0 1.3E-33 4.3E-38 345.5 16.7 176 973-1164 229-415 (501)
22 1wkb_A Leucyl-tRNA synthetase; 100.0 1.8E-32 6.3E-37 363.5 9.8 461 43-598 34-611 (810)
23 1ile_A Ilers, isoleucyl-tRNA s 100.0 1.1E-31 3.7E-36 355.4 13.2 254 1208-1557 550-817 (821)
24 2wfd_A Leucyl-tRNA synthetase, 100.0 5.4E-31 1.8E-35 299.5 14.3 246 301-733 1-246 (252)
25 3c8z_A Cysteinyl-tRNA syntheta 100.0 1.2E-29 4E-34 310.9 25.3 157 980-1166 226-390 (414)
26 3u1f_A Methionyl-tRNA syntheta 100.0 1.3E-29 4.5E-34 323.1 12.8 212 1207-1450 283-503 (542)
27 2v0c_A Aminoacyl-tRNA syntheta 100.0 1E-28 3.4E-33 326.3 15.3 235 1216-1565 548-836 (878)
28 1li5_A Cysrs, cysteinyl-tRNA s 100.0 1.8E-27 6.2E-32 294.3 22.4 142 1006-1170 227-372 (461)
29 2wfg_A Cytosolic leucyl-tRNA s 99.9 1.1E-28 3.8E-33 281.2 9.0 123 545-734 124-246 (261)
30 3kfl_A Methionyl-tRNA syntheta 99.9 4.5E-28 1.5E-32 308.4 12.2 215 1205-1451 297-520 (564)
31 1rqg_A Methionyl-tRNA syntheta 99.9 5.9E-28 2E-32 314.2 12.2 216 1205-1448 292-523 (722)
32 4dlp_A Aminoacyl-tRNA syntheta 99.9 7.9E-28 2.7E-32 305.3 12.8 218 1206-1454 280-506 (536)
33 3h99_A Methionyl-tRNA syntheta 99.9 1.1E-27 3.7E-32 305.7 11.3 226 1203-1530 301-527 (560)
34 4arc_A Leucine--tRNA ligase; l 99.9 8E-27 2.7E-31 305.4 15.6 191 1232-1532 576-811 (880)
35 2csx_A Methionyl-tRNA syntheta 99.9 2E-26 6.7E-31 290.4 13.4 216 1206-1520 254-469 (497)
36 2x1l_A Methionyl-tRNA syntheta 99.9 3E-26 1E-30 290.6 12.9 215 1206-1451 269-496 (524)
37 2d5b_A Methionyl-tRNA syntheta 99.9 3.5E-25 1.2E-29 279.5 9.6 207 1206-1448 255-471 (500)
38 3fnr_A Arginyl-tRNA synthetase 99.9 4.1E-22 1.4E-26 245.0 25.4 160 86-276 28-190 (464)
39 1iq0_A Arginyl-tRNA synthetase 99.8 6.8E-19 2.3E-23 224.6 21.8 136 1035-1172 381-547 (592)
40 2zue_A Arginyl-tRNA synthetase 99.8 2.3E-17 8E-22 210.9 26.4 136 1035-1172 411-591 (629)
41 1wny_A Isoleucyl-tRNA syntheta 99.7 1.2E-18 4E-23 189.6 6.0 33 329-361 22-54 (186)
42 1wka_A Valyl-tRNA synthetase; 99.6 4.8E-16 1.6E-20 162.3 10.1 26 329-354 16-41 (147)
43 3o0a_A Leucyl-tRNA synthetase 99.6 3.7E-17 1.3E-21 181.5 0.7 31 330-360 38-68 (219)
44 2ajg_A Leucyl-tRNA synthetase; 99.6 1.6E-16 5.4E-21 174.4 4.0 33 328-360 22-54 (196)
45 1li5_A Cysrs, cysteinyl-tRNA s 99.6 1.4E-15 4.8E-20 188.1 8.1 146 1208-1406 226-372 (461)
46 3c8z_A Cysteinyl-tRNA syntheta 99.6 1.1E-15 3.7E-20 187.3 6.9 139 1207-1402 249-390 (414)
47 3sp1_A Cysteinyl-tRNA syntheta 99.4 4.1E-14 1.4E-18 173.6 6.6 150 1207-1399 258-414 (501)
48 3tqo_A Cysteinyl-tRNA syntheta 99.4 7.9E-13 2.7E-17 161.7 9.6 126 89-287 25-151 (462)
49 3fnr_A Arginyl-tRNA synthetase 99.4 1E-12 3.5E-17 161.7 10.3 167 1215-1408 245-418 (464)
50 1f7u_A Arginyl-tRNA synthetase 99.2 8.5E-11 2.9E-15 149.4 13.3 160 86-277 141-318 (607)
51 1iq0_A Arginyl-tRNA synthetase 99.0 3.5E-10 1.2E-14 144.5 8.9 156 89-276 104-264 (592)
52 1irx_A Lysyl-tRNA synthetase; 98.8 9.7E-10 3.3E-14 138.7 3.1 61 1035-1096 264-327 (523)
53 1irx_A Lysyl-tRNA synthetase; 98.7 1.4E-09 4.9E-14 137.2 1.1 126 90-277 21-153 (523)
54 2zue_A Arginyl-tRNA synthetase 98.7 1.5E-08 5.2E-13 129.8 10.0 172 86-276 117-294 (629)
55 2o5r_A Glutamyl-tRNA synthetas 97.5 0.00011 3.7E-09 91.0 7.1 41 88-130 11-51 (481)
56 3aii_A Glutamyl-tRNA synthetas 97.4 3.1E-05 1E-09 96.0 0.5 104 979-1097 270-394 (553)
57 1f7u_A Arginyl-tRNA synthetase 97.3 0.00028 9.5E-09 89.9 8.8 138 1031-1172 392-569 (607)
58 1nzj_A Hypothetical protein YA 97.3 0.00024 8.2E-09 82.5 6.3 45 226-276 55-100 (298)
59 3al0_C Glutamyl-tRNA(Gln) amid 97.2 0.00077 2.6E-08 85.2 10.1 39 88-129 128-166 (592)
60 3aii_A Glutamyl-tRNA synthetas 97.0 0.00044 1.5E-08 85.7 5.9 45 226-276 146-190 (553)
61 1qtq_A GLNRS, protein (glutami 96.8 0.0011 3.8E-08 82.1 7.0 30 89-119 26-55 (553)
62 2hz7_A Glutaminyl-tRNA synthet 96.6 0.0017 5.8E-08 84.0 6.0 46 226-276 116-161 (851)
63 1qtq_A GLNRS, protein (glutami 96.5 0.00053 1.8E-08 85.0 1.2 99 979-1090 207-325 (553)
64 1wka_A Valyl-tRNA synthetase; 96.4 0.00091 3.1E-08 69.5 2.1 77 360-438 54-140 (147)
65 2cfo_A Glutamyl-tRNA synthetas 96.3 0.0027 9.4E-08 78.6 5.3 44 1035-1079 233-278 (492)
66 4g6z_A Glutamate-tRNA ligase; 96.2 0.0041 1.4E-07 76.5 6.2 39 88-129 24-62 (490)
67 4gri_A Glutamate--tRNA ligase; 95.8 0.0078 2.7E-07 75.2 6.5 37 90-129 25-61 (512)
68 3o0a_A Leucyl-tRNA synthetase 95.8 0.0032 1.1E-07 69.7 2.5 77 360-438 115-211 (219)
69 3afh_A Glutamyl-tRNA synthetas 95.7 0.0067 2.3E-07 75.0 5.3 44 1035-1079 241-286 (488)
70 1j09_A Glutamyl-tRNA synthetas 95.5 0.011 3.8E-07 72.8 6.2 44 1035-1079 229-274 (468)
71 2hz7_A Glutaminyl-tRNA synthet 95.4 0.0047 1.6E-07 80.0 2.3 99 979-1090 247-365 (851)
72 2cfo_A Glutamyl-tRNA synthetas 95.2 0.0036 1.2E-07 77.5 0.4 43 228-276 53-96 (492)
73 1wny_A Isoleucyl-tRNA syntheta 95.1 0.0039 1.3E-07 67.5 0.0 72 364-438 99-177 (186)
74 2ja2_A Glutamyl-tRNA synthetas 95.0 0.026 9E-07 69.8 7.1 44 1035-1079 243-288 (498)
75 2ajg_A Leucyl-tRNA synthetase; 94.6 0.013 4.3E-07 64.0 2.6 77 360-438 94-192 (196)
76 2cyb_A Tyrosyl-tRNA synthetase 91.7 0.097 3.3E-06 61.6 4.1 39 1035-1078 200-239 (323)
77 2wfd_A Leucyl-tRNA synthetase, 91.5 0.1 3.6E-06 59.0 3.9 36 360-397 107-144 (252)
78 2wfg_A Cytosolic leucyl-tRNA s 91.1 0.059 2E-06 61.3 1.4 130 306-438 2-246 (261)
79 2cyb_A Tyrosyl-tRNA synthetase 88.4 0.089 3.1E-06 61.9 0.1 38 1239-1281 201-239 (323)
80 1h3f_A Tyrosyl-tRNA synthetase 83.9 0.58 2E-05 56.9 3.9 29 1033-1061 215-245 (432)
81 3tzl_A Tryptophanyl-tRNA synth 83.3 0.52 1.8E-05 55.2 3.1 27 1236-1262 174-203 (322)
82 2jan_A Tyrosyl-tRNA synthetase 83.3 0.59 2E-05 56.7 3.6 27 1035-1061 217-245 (432)
83 1n3l_A Tyrosyl-tRNA synthetase 82.2 0.68 2.3E-05 55.4 3.5 25 1036-1060 209-235 (372)
84 2o5r_A Glutamyl-tRNA synthetas 80.7 0.8 2.7E-05 56.6 3.5 61 1239-1303 249-313 (481)
85 3tzl_A Tryptophanyl-tRNA synth 80.5 0.4 1.4E-05 56.1 0.7 29 1032-1060 173-204 (322)
86 3pz6_A Leurs, leucyl-tRNA synt 79.6 0.71 2.4E-05 52.8 2.3 38 361-398 74-111 (311)
87 2g36_A Tryptophanyl-tRNA synth 77.3 0.6 2.1E-05 55.1 0.9 29 1236-1264 188-218 (340)
88 2g36_A Tryptophanyl-tRNA synth 76.5 0.76 2.6E-05 54.2 1.5 29 1033-1061 188-218 (340)
89 2dlc_X Tyrosyl-tRNA synthetase 75.9 1.3 4.5E-05 53.3 3.3 26 1035-1060 212-240 (394)
90 1y42_X Tyrosyl-tRNA synthetase 75.7 0.71 2.4E-05 55.5 0.9 27 1238-1264 279-306 (392)
91 1j09_A Glutamyl-tRNA synthetas 75.0 1.2 4.2E-05 54.6 2.8 54 1240-1294 231-288 (468)
92 2ja2_A Glutamyl-tRNA synthetas 72.6 1.6 5.4E-05 54.0 2.9 53 1241-1294 246-302 (498)
93 1y42_X Tyrosyl-tRNA synthetase 72.4 1.3 4.3E-05 53.3 1.9 28 1034-1061 278-306 (392)
94 2ts1_A Tyrosyl-tRNA synthetase 72.4 0.85 2.9E-05 55.2 0.5 25 1240-1264 218-243 (419)
95 2pid_A Tyrosyl-tRNA synthetase 72.0 0.73 2.5E-05 54.7 -0.2 25 1240-1264 242-267 (356)
96 1jil_A Tyrrs, tyrosyl-tRNA syn 71.9 0.95 3.2E-05 54.9 0.7 26 1239-1264 218-244 (420)
97 2yxn_A Tyrosyl-tRNA synthetase 71.4 0.87 3E-05 53.3 0.2 24 1241-1264 224-248 (322)
98 2el7_A Tryptophanyl-tRNA synth 71.3 0.91 3.1E-05 53.5 0.3 21 1243-1263 185-207 (337)
99 3vgj_A Tyrosyl-tRNA synthetase 71.1 2.4 8.3E-05 50.5 4.0 24 1036-1059 232-259 (373)
100 1yi8_B Tryptophanyl-tRNA synth 71.0 1 3.5E-05 53.3 0.7 27 1236-1262 197-226 (351)
101 3afh_A Glutamyl-tRNA synthetas 70.8 1.7 6E-05 53.6 2.7 53 1241-1294 244-299 (488)
102 2jan_A Tyrosyl-tRNA synthetase 70.3 1.1 3.9E-05 54.3 0.9 24 1240-1263 219-244 (432)
103 1yi8_B Tryptophanyl-tRNA synth 69.4 1.4 4.8E-05 52.2 1.4 29 1032-1060 196-227 (351)
104 2yxn_A Tyrosyl-tRNA synthetase 69.1 1.5 5E-05 51.4 1.5 26 1036-1061 222-248 (322)
105 3al0_C Glutamyl-tRNA(Gln) amid 68.8 1.2 4.2E-05 56.2 0.8 44 1035-1079 345-390 (592)
106 2el7_A Tryptophanyl-tRNA synth 68.6 1.3 4.3E-05 52.3 0.8 29 1033-1061 176-208 (337)
107 1h3f_A Tyrosyl-tRNA synthetase 68.0 1.3 4.5E-05 53.8 0.8 28 1237-1264 216-245 (432)
108 2pid_A Tyrosyl-tRNA synthetase 68.0 1.4 4.7E-05 52.3 0.9 27 1035-1061 240-267 (356)
109 2ts1_A Tyrosyl-tRNA synthetase 67.8 1.7 5.7E-05 52.7 1.6 27 1035-1061 216-243 (419)
110 1jil_A Tyrrs, tyrosyl-tRNA syn 67.6 1.8 6.1E-05 52.5 1.8 27 1035-1061 217-244 (420)
111 1n3l_A Tyrosyl-tRNA synthetase 66.0 1.2 4.2E-05 53.1 -0.0 24 1240-1263 210-235 (372)
112 2zp1_A Tyrosyl-tRNA synthetase 66.0 1.5 5.2E-05 51.1 0.7 23 1240-1262 191-215 (314)
113 3tze_A Tryptophanyl-tRNA synth 64.8 3.1 0.00011 50.1 3.1 25 1036-1060 274-302 (406)
114 1i6k_A TRPRS, tryptophanyl-tRN 61.5 3.7 0.00013 48.1 2.9 33 1236-1268 172-216 (328)
115 2yy5_A Tryptophanyl-tRNA synth 61.3 2.1 7.3E-05 50.6 0.8 27 1236-1262 182-216 (348)
116 3i05_A Tryptophanyl-tRNA synth 60.9 3.1 0.00011 49.9 2.1 30 1239-1268 255-291 (395)
117 2yy5_A Tryptophanyl-tRNA synth 59.4 2.7 9.4E-05 49.6 1.3 28 1033-1060 182-217 (348)
118 3hzr_A Tryptophanyl-tRNA synth 59.3 4.1 0.00014 48.7 2.7 25 1238-1262 254-281 (386)
119 2zp1_A Tyrosyl-tRNA synthetase 57.1 3.2 0.00011 48.4 1.3 25 1036-1060 190-216 (314)
120 1nzj_A Hypothetical protein YA 56.9 4.3 0.00015 46.9 2.3 22 1035-1056 214-236 (298)
121 2dlc_X Tyrosyl-tRNA synthetase 56.3 2.4 8.3E-05 51.0 0.1 23 1240-1262 214-239 (394)
122 2cya_A Tyrosyl-tRNA synthetase 56.1 5.1 0.00017 47.6 2.9 15 941-955 176-190 (364)
123 1i6k_A TRPRS, tryptophanyl-tRN 55.9 3.4 0.00012 48.4 1.3 34 1032-1065 171-216 (328)
124 3jxe_A Tryptophanyl-tRNA synth 53.4 5.3 0.00018 47.8 2.4 22 1240-1261 239-264 (392)
125 1r6u_A Tryptophanyl-tRNA synth 53.0 3 0.0001 50.7 0.2 23 1240-1262 288-314 (437)
126 3hv0_A Tryptophanyl-tRNA synth 52.7 3 0.0001 50.1 0.1 25 1238-1262 250-278 (393)
127 2ip1_A Tryptophanyl-tRNA synth 50.9 3.1 0.00011 50.6 -0.2 24 1240-1263 281-308 (432)
128 3prh_A Tryptophanyl-tRNA synth 49.9 6.8 0.00023 46.8 2.6 15 941-955 170-184 (388)
129 3p0j_A Tyrosyl-tRNA synthetase 49.1 9.8 0.00034 48.9 4.0 23 1036-1058 215-241 (690)
130 2ip1_A Tryptophanyl-tRNA synth 47.4 5.2 0.00018 48.6 1.0 26 1036-1061 280-309 (432)
131 1r6u_A Tryptophanyl-tRNA synth 47.1 4.8 0.00016 48.9 0.6 25 1036-1060 287-315 (437)
132 3tze_A Tryptophanyl-tRNA synth 47.0 7.7 0.00026 46.6 2.4 24 1239-1262 274-301 (406)
133 1r6t_A Tryptophanyl-tRNA synth 46.9 4.2 0.00014 50.0 0.1 24 1239-1262 334-361 (477)
134 3i05_A Tryptophanyl-tRNA synth 46.4 5.5 0.00019 47.8 1.0 31 1035-1065 254-291 (395)
135 3hv0_A Tryptophanyl-tRNA synth 46.0 5.5 0.00019 47.8 0.9 25 1035-1059 250-278 (393)
136 3jxe_A Tryptophanyl-tRNA synth 45.9 6.1 0.00021 47.3 1.3 23 1036-1058 238-264 (392)
137 3hzr_A Tryptophanyl-tRNA synth 45.6 7.3 0.00025 46.5 1.9 25 1035-1059 254-281 (386)
138 3sz3_A Tryptophanyl-tRNA synth 44.8 8.2 0.00028 45.4 2.1 15 1248-1262 197-215 (341)
139 1r6t_A Tryptophanyl-tRNA synth 41.3 7 0.00024 48.1 0.8 25 1036-1060 334-362 (477)
140 2cya_A Tyrosyl-tRNA synthetase 41.0 5.9 0.0002 47.1 0.1 15 1249-1263 236-251 (364)
141 3foc_A Tryptophanyl-tRNA synth 39.7 6.8 0.00023 47.6 0.4 23 1239-1261 318-344 (451)
142 3sz3_A Tryptophanyl-tRNA synth 38.1 5.4 0.00018 46.9 -0.8 28 1032-1059 180-215 (341)
143 2j5b_A Tyrosyl-tRNA synthetase 35.4 8.3 0.00028 45.5 0.2 24 1239-1262 217-244 (348)
144 2cyc_A Tyrosyl-tRNA synthetase 35.3 8.5 0.00029 45.9 0.3 14 1250-1263 250-264 (375)
145 2j5b_A Tyrosyl-tRNA synthetase 35.0 11 0.00036 44.6 1.0 25 1035-1059 216-244 (348)
146 3foc_A Tryptophanyl-tRNA synth 32.0 12 0.0004 45.6 0.7 23 1036-1058 318-344 (451)
147 4g6z_A Glutamate-tRNA ligase; 32.0 26 0.00089 43.1 3.8 55 1240-1295 252-309 (490)
148 3prh_A Tryptophanyl-tRNA synth 31.9 9.7 0.00033 45.4 -0.0 14 1249-1262 224-240 (388)
149 3a04_A Tryptophanyl-tRNA synth 31.6 22 0.00074 42.3 2.9 42 86-132 67-108 (372)
150 2cyc_A Tyrosyl-tRNA synthetase 31.6 13 0.00044 44.3 1.0 15 941-955 179-193 (375)
151 3n9i_A Tryptophanyl-tRNA synth 28.9 14 0.00048 43.5 0.6 15 941-955 151-165 (346)
152 3vgj_A Tyrosyl-tRNA synthetase 24.0 33 0.0011 40.7 2.6 31 99-133 65-96 (373)
153 3n9i_A Tryptophanyl-tRNA synth 22.9 17 0.00059 42.7 -0.1 14 1248-1261 203-220 (346)
154 3p0j_A Tyrosyl-tRNA synthetase 21.3 36 0.0012 43.7 2.4 46 88-139 39-85 (690)
No 1
>1wz2_A Leucyl-tRNA synthetase; ligase, riken structural genomics/proteomics initiativ structural genomics, ligase-RNA complex; 3.21A {Pyrococcus horikoshii}
Probab=100.00 E-value=3e-128 Score=1291.70 Aligned_cols=862 Identities=32% Similarity=0.571 Sum_probs=679.8
Q ss_pred hhHHHHHHHHHHhHhCCCccccCCCcCCCCCCCCceeeccccCCCCCcccCcccchhHHhHHHhhhhccccccCCCCCCe
Q psy5309 11 YLQKIEKEVQEEWDREKIYEETVGDAVRSSPDDKFFTTFPFPYMNGRLHLGHTFSLSKFREKIYEETVGDAVRSSPDDKF 90 (1618)
Q Consensus 11 ~~~~~E~~~~~~W~~~~if~~~~~~~~~~~~~~k~~~~~~~py~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f 90 (1618)
.++++|++||++|+++++|+++.+. +.+.++|
T Consensus 5 ~~~~iE~~~~~~W~~~~~f~~~~~~------------------------------------------------~~~~~kf 36 (967)
T 1wz2_A 5 NFKAIEEKWQKRWLEAKIFEPNIRD------------------------------------------------KPKEKKF 36 (967)
T ss_dssp CCHHHHHHHHHHHHHHTTTSCCGGG------------------------------------------------SCGGGCC
T ss_pred CHHHHHHHHHHHHHhCCCcccCccc------------------------------------------------cCCCCcE
Confidence 5789999999999999999987652 1134789
Q ss_pred EEeCCCCCCCCcchhhhhchhhhhHHHHHHHHHcCCcccccccccCCChhhHHHHHHHHHHHHhcCCCCCCCCCCCCCCC
Q psy5309 91 FTTFPFPYMNGRLHLGHTFSLSKCEFSVRFNRLKGKRVLFPFGFHCTGMPIKACADKLKREMESFGFPPQFPSEDTEPQT 170 (1618)
Q Consensus 91 ~v~~ppP~~nG~LHiGHa~~~~~~D~~aR~~rm~G~~V~~~~G~d~~G~pIe~~a~k~~~~~~~~gi~~~~~e~~~~~~~ 170 (1618)
++++|||||||.|||||++|++++|+++||+||+||+|+|++||||||+|||..|++++. |.
T Consensus 37 ~i~~~pPy~nG~lHiGH~~~~~~~Dii~Ry~rm~G~~Vl~~~GwD~~GlPie~~a~~~~~-----~~------------- 98 (967)
T 1wz2_A 37 YITVAFPYLSGHLHVGHARTYTIPDVIARFKRMQGYNVLFPMAWHITGSPIVGIAERIKN-----RD------------- 98 (967)
T ss_dssp BEEECCCBCSSCCBHHHHHHHHHHHHHHHHHHHTTCCCBCCCCBBCCSSHHHHHHHHHHT-----TC-------------
T ss_pred EEEeCCCCCCCCcchhhhHHHHHHHHHHHHHHcCCCccCCCCcCCCCCcHHHHHHHHhhc-----cc-------------
Confidence 999999999999999999999999999999999999999999999999999999987421 10
Q ss_pred CCCCCCchhcccccCcchHHHHHhhhhHHHHHHHHhcCCCHHHHHHHhhhhhHHhhchhHHHHHHHHcCCcccccCceee
Q psy5309 171 DKDDDDPVIKDKSKGKKSKAVAKAGSAKYQWQIMQSLGLEDDEIRKFADASHWLDHFPPLAVQDLRSIGIHVDWRRTFIT 250 (1618)
Q Consensus 171 ~~~~~~~~~~~~~~g~~~~~~ak~~~~~~~~~~~~~~g~~~~e~~~f~~~~~~~~~~~~~~~~~l~~lGi~~Dw~~~~~T 250 (1618)
....+.+.+.+|++.+++++|.+|++|+.++.+.++++|++||+++||+++|.|
T Consensus 99 --------------------------~~~~~~~~~~~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~lG~~~Dw~r~~~T 152 (967)
T 1wz2_A 99 --------------------------PKTIWIYRDVYKVPEEILWTFEDPINIVKYFMKAAKETFIRAGFSVDWSREFYT 152 (967)
T ss_dssp --------------------------HHHHHHHHTTSCCCHHHHHGGGSHHHHHHHHHHHHHHHHHTTTCCCCTTSCCBC
T ss_pred --------------------------hhHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCceEecCCCeEE
Confidence 001112223458999999999999999999999999999999999999999999
Q ss_pred cCCChhhhHHHHHHHHHHHhcCccccCceeEEEecCCCCcccchhhccCCCCCCeeEEEEEEeeccCCccccccCCCCCc
Q psy5309 251 TDSNPFFDSFVRWQFMRLRDRHKIKYGKRYTVFSPRDNQPCMDHDRASGEGVGPQEYTLIKMRLVKPYPAKLCCLDSKPV 330 (1618)
Q Consensus 251 ~d~~p~y~~~v~~~f~~L~~kG~iy~g~~~v~w~p~~~t~lsd~Ev~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~ 330 (1618)
+|.||.|.++++|+|.+|+++|+||+|.++|+|||.|+|+|||+||++++.++++.|+.++|++.+. +++.
T Consensus 153 ~d~np~y~~~v~~~F~~L~~kGliyr~~~~v~wcp~~~T~Lad~Ev~~~~~~~~~~~~~v~f~~~~~---------~~~~ 223 (967)
T 1wz2_A 153 TSLFPPFSKFIEWQFWKLKEKGYIVKGAHRVRWDPVVGTPLGDHDLMEGEDVPILDYIIIKFELREN---------GEVI 223 (967)
T ss_dssp STTSHHHHHHHHHHHHHTTTTTCEEECCCCCEECTTTSCBCCSSSCSSCCCCCEECCEEEEEECCCS---------SSCC
T ss_pred CCCChhHHHHHHHHHHHHHHCCCEEEeceEecccCCCCCCcchhhhccCCCceeceeEEEEEEecCC---------CCce
Confidence 9988999999999999999999999999999999999999999999999999999999999986321 1236
Q ss_pred EEEEeecCccccccCceEEeCCCCCceeecccCC---ccEEEEecccccCccCCCeeEEecCCCCeeEEEcCCCcEEEec
Q psy5309 331 FLVAATLRPETMYGQTNAWVRPDMAYIALSCLDS---KPVFLVAATLRPETMYGQTNAWVRPDMAYIAFTTATGEVFVCT 407 (1618)
Q Consensus 331 ~l~i~TTrPeTl~g~~avaV~P~~~Y~~~~~~~~---~~~~iv~~~~~~~t~~Gt~~v~v~P~~~y~~~~~~~~~~~i~~ 407 (1618)
+|+||||||||||||+||||||+..|+.++. .+ .+.+|++
T Consensus 224 ~l~i~TTrPeTl~g~~avav~P~~~Y~~~~~-~~~~~~~~~i~a------------------------------------ 266 (967)
T 1wz2_A 224 YLPAATLRPETVYGVTNMWVNPNATYVKAKV-RRKDKEETWIVS------------------------------------ 266 (967)
T ss_dssp EEEEEESCGGGGGGCCEEEECSSSCEEEEEE-ECSSCEEEEEEE------------------------------------
T ss_pred EEEEEcCCchHhhhheEEEECCCCcEEEEEe-cCCCcceeeehH------------------------------------
Confidence 9999999999999999999999999998743 12 1334443
Q ss_pred cccccccccCCCchhhhHHHHhhhhccCcceecCCEEEeccccceeeccCCchHHHHHHHHhccccccchhhhhhHhhhh
Q psy5309 408 ERSARNMAYQGFTEVEGKINVLLRLTGQVCIRSGDECVVALCDQWYLDYGEPTWKAAAEQCLANMNTYHDEVRRNFGASL 487 (1618)
Q Consensus 408 ~~~~~~~~~~g~~~~~a~~~ii~~l~~~~l~r~g~~i~~~l~~QWfl~~~~~~~k~~~~~~~~~~~~~p~~~~~~~~~~~ 487 (1618)
++.+.++.+++ ...+++.+++|..+. |..+.++++
T Consensus 267 ~~~~~~~~~~~-----~~~~~~~~~~G~~l~--G~~~~~P~~-------------------------------------- 301 (967)
T 1wz2_A 267 KEAAYKLSFQD-----REIEVIEEFKGEKLI--GKYVRNPVS-------------------------------------- 301 (967)
T ss_dssp HHHHHHHHHSS-----CEEEEEEECCSSTTS--SCEEECSSS--------------------------------------
T ss_pred HHHHHHHHhhc-----cCcEEEEEEEchhhc--CCEEECCCC--------------------------------------
Confidence 32222233332 112345556666666 666665554
Q ss_pred hccccceeeccccCCccCCCCCcchhhccCCCcccceEEEeeccccCcccccCCCCcccccccCCCcceeeeeeccCCCC
Q psy5309 488 NWLHEYACSRTYGLGTKLPWDEQWLIESLSDSTIYMAYYTVAHLLQGGTFRGENGNALNIKAEDLTPEVWDYVFFKSAPF 567 (1618)
Q Consensus 488 ~~l~dWciSRq~~WG~~iP~~~~w~i~~~~~~~i~~a~~~~~~~~~~~~~~g~~~~~~~v~~~~gtg~v~~~~~~~~~~~ 567 (1618)
|..+| ++++ ++|+++.|||+| |+
T Consensus 302 --------------~~~ip--------------------i~~~--------------~~V~~~~GTG~V------~~--- 324 (967)
T 1wz2_A 302 --------------GDEVI--------------------ILPA--------------EFVDPDNATGVV------MS--- 324 (967)
T ss_dssp --------------SCEEE--------------------EEEC--------------SSCCSSSTTSCE------EE---
T ss_pred --------------CCceE--------------------EEec--------------ccccCCCCcccE------Ee---
Confidence 12244 6654 899999999999 99
Q ss_pred CCCCCCChhhHHHHHhhhccccccceeccccccCCCCchhhhHhhhccchhhhhhhhhhhhhccCCccccCCCCcccccc
Q psy5309 568 PPKCRVPKAKLDIMRREFQYWYPVDLRCSGKVSTKLPWDEQWLIESLSDSTIYMAYYTVAHLLQGGTFRGENGNALNINC 647 (1618)
Q Consensus 568 ~~~~~~p~~~~~~~~~~f~~wyp~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 647 (1618)
+|+|+ |+||.++.++.++.+++++| ||+.
T Consensus 325 -----~Pah~------------~~Dy~~~~~~~~~~~~~~k~------------------------------~l~~---- 353 (967)
T 1wz2_A 325 -----VPAHA------------PFDHVALEDLKRETEILEKY------------------------------DIDP---- 353 (967)
T ss_dssp -----CTTSC------------TTTTTTTSCCSCCSCCCCTT------------------------------CCCC----
T ss_pred -----ecCCC------------HHHHHHHHhhccchhHHHHc------------------------------CCch----
Confidence 99999 99999999887777888888 6543
Q ss_pred eeeeeccCCCCccccccCCCCCchHHHHHHHhccCCcccHHHHHHHHHHHHhhcccceeeeecccCCcchHHHHHHHHHH
Q psy5309 648 VIVFQVLPYDPVPIIQVPEYGNLCAVTVYEKLKIQSQNDKDKLQEAKELVYLKGFYDGIMLVGEFKGKKVQEVKKLLQKK 727 (1618)
Q Consensus 648 ~~~~~~~~~~~~~~i~~~~~g~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~G~~~~~~~~G~~v~~a~~~i~~~ 727 (1618)
+++.+++++++|+++++|+++++.++++++|.+++|.+++++|++.+|.++|++|+|++|+|+|++|++||+.|+++
T Consensus 354 ---~~~~~l~~i~vi~~~~~g~~~~~~~~~~~~i~~~~d~~~l~~a~~~~y~~~~~~G~~~~g~~~G~~v~ea~~~i~~~ 430 (967)
T 1wz2_A 354 ---RIVENITYISLIKLEGYGDFPAVEEVNKLGIKSQKDKEKLEQATKTIYKAEYHKGIFKVPPYEGKPVQEVKEAIAKE 430 (967)
T ss_dssp ---CCC----------------CCSSCCTTTSSSCCCSSCTTHHHHTTHHHHHHHHSCBCCSSSSCSSBHHHHTTTTHHH
T ss_pred ---hhcccccceeeeecCCccccchhhhhhhccCCCccchHHHHHHHHHhhhccccCceEeccCcCCcCHHHHHHHHHHH
Confidence 36677889999999999999999999999999999988999999999999999999999999999999999999999
Q ss_pred HHHhCCcccCCCcccceeeecccccccccCCCCceEeeeCCCchhhHHhhhhcCCCCCcccccccCCeEEEe-ccCccee
Q psy5309 728 IDIIGVALKAPVTSHSVIYTLPMLSIREDKGTGIVTSVPSDSPDDYAALVDLKKKPPFREKYHVTDEMCVVA-LCDQWYL 806 (1618)
Q Consensus 728 L~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~v~~r~g~d~~~~~~l~~~~~~~~~~~H~y~~c~~~-~~~QWfi 806 (1618)
|++.|++.+ ++.+.. .++||||| ..|..+ +++|||+
T Consensus 431 L~~~g~l~~---------~~~~~~-----------~p~~~R~g-----------------------~~~i~~~~~~qWFi 467 (967)
T 1wz2_A 431 MLEKGIAEI---------MYEFAE-----------KNVISRFG-----------------------NRAVIKIIHDQWFI 467 (967)
T ss_dssp HHHHTSEEE---------CCEESS-----------SCCBCSSS-----------------------SBCEECCCSSCEEE
T ss_pred HHhCCCceE---------EEecCC-----------CceECCCC-----------------------CEEEEeccCCccce
Confidence 999996521 222111 12677887 566666 6999999
Q ss_pred ecCCchHHHHHHHHHhcccccChHHHHHHHHhhcCcCceeecccCCCCcccCCCccccccccCCcceEeehhHHHHHhhc
Q psy5309 807 DYGEPTWKAAAEQCLANMNTYHDEVRRNFGASLNWLHEYACSRTYGLGTKLPWDEQWLIESLSDSTIYMAYYTVAHLLQG 886 (1618)
Q Consensus 807 ~~~~~~~k~~~~~~i~~v~~~P~~~k~~~~~~l~~l~DW~ISRqr~WG~PIP~d~~w~~e~~~D~~iy~~~~ti~~~l~~ 886 (1618)
++++..||+++++++++++|+|+++++++.+||+|++||||||||+||||||+|+.|+|++++|+++|+|++++++++++
T Consensus 468 ~~~~~~~k~~~l~~~~~~~~~P~~~~~~~~~~l~~l~DW~ISRqr~WG~piP~d~~~~~~~~~ds~iYv~~~~~~~~~~~ 547 (967)
T 1wz2_A 468 DYGNPEWKEKARKALERMKILPETRRAQFEAIIDWLDKKACARKIGLGTPLPWDPEWVIESLSDSTIYMAYYTISRHINK 547 (967)
T ss_dssp ESCCTTHHHHHHHHHTTSCEESSTTHHHHHHHHHSCCEECCCBSSSSSEECTTCTTSEECHHHHTTSTHHHHHHHHHHHH
T ss_pred ecCchHHHHHHHHhhhccEeeCccccchHHHhhhcccCeeeccCCCCCccCCcCcccccccCCCCceEeehhhhhhHHHH
Confidence 99876899999999999999999999999999999999999999999999999999999999999999999999999852
Q ss_pred CccCCCCCccCCCCcCCCCCcceeEEecccC---C---CCCCCCCChhhHHHHHHhhccccccceEeecccccccchhHH
Q psy5309 887 GTFRGENGNALNIKAEDLTPEVWDYVFFKAA---P---FPPKCRVPKAKLDIMRREFQYWYPVDLRCSGKDLIQNHLTFF 960 (1618)
Q Consensus 887 ~~~~g~~~~~l~~~~~~l~~~~~d~~f~~~~---~---~~~~~~~~~~~~~~~~~~~~~w~p~Dl~v~G~D~~~~Hl~f~ 960 (1618)
+.+ ..+++++++.++++|+||.+.. . +....+.+...+.++++.|++|||+|++++|+||+++|+.|.
T Consensus 548 --~~~----~~g~~~~~l~~~~~d~~~~~~~~~g~~~~~~~~sG~~~~~~~~~~~~~~~w~P~Di~~~G~D~i~~H~~~~ 621 (967)
T 1wz2_A 548 --LRQ----EGKLDPEKLTPEFFDYIFLEEFSEDKEKELEKKTGIPAEIIHEMKEEFEYWYPLDWRCSGKDLIPNHLTFF 621 (967)
T ss_dssp --HHH----TTCCCGGGCCHHHHHHTTTSCCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHCSCSEEEEEGGGTTTHHHHH
T ss_pred --HHH----hcCCChHHcCcccceeeccCccccCccccchhhcCCCHHHHhhhHHHHHhhCCCeEEeeeeCcchhHHHHH
Confidence 100 1235667888999999986410 0 000112455555566788999999999999999999987665
Q ss_pred HHHHhhccCCCCCCCCccccCCCccchhhhHHHHhhhhhhhhhhcccccccccchhhhhhhhhccCCCCCCcCcEEEEcc
Q psy5309 961 IYIHTAIWGDEPEMWPRGIRANGHLLLNSAKDLIQNHLTFFIYKLFSDLIQNHLTFFIYIHTAIWGDEPEMWPRGIRANG 1040 (1618)
Q Consensus 961 lf~h~~lw~~~~~~wp~~lr~~g~~~~~e~~~~i~~~~~~~i~~~~~~~~~~h~~~~i~~~~~~~p~~~~~~pk~v~~hG 1040 (1618)
++.|.++| +
T Consensus 622 ~~~~~a~~---------------------------------------------------------~-------------- 630 (967)
T 1wz2_A 622 IFNHVAIF---------------------------------------------------------R-------------- 630 (967)
T ss_dssp HHHHHHHS---------------------------------------------------------C--------------
T ss_pred HHHHHHHc---------------------------------------------------------C--------------
Confidence 44333221 0
Q ss_pred ceeeCCccceeccCcccChHHHHhhcCccceEEeecccCcccccccccHHHHHHHHhhHHHHHHHHHHHHHhcccCCCCC
Q psy5309 1041 HLLLNSAKMSKSEGNFLTLTEAVKKFSADGMRLCLADSGDSVEDANFVESMADAGILRLYTFIEWVKEILATQSTLRTGS 1120 (1618)
Q Consensus 1041 ~vl~~G~KMSKS~GNvV~p~eii~~yGaDalRl~l~~~~~~~~D~~fs~~~~~~~~~kl~N~~~~l~~~l~~~~~~~~~~ 1120 (1618)
T Consensus 631 -------------------------------------------------------------------------------- 630 (967)
T 1wz2_A 631 -------------------------------------------------------------------------------- 630 (967)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCcchHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHhcccCcchHHHHHHHHHHHHHhcCcCCCCc
Q psy5309 1121 QDSFNDKVFLSEMNLKIKETEDHYTKMLFKEALRTGFFELQAARDKYRELTAAEGGMHRTLVLRFVEVQALLLCPVCPHV 1200 (1618)
Q Consensus 1121 ~~~~~D~~~l~~l~~~i~~v~~~~e~~~f~~al~~~~~~l~~~~n~Yi~~~k~~~~~~~~~l~~~l~~l~~lLaP~~P~~ 1200 (1618)
T Consensus 631 -------------------------------------------------------------------------------- 630 (967)
T 1wz2_A 631 -------------------------------------------------------------------------------- 630 (967)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hhHHHHHhCCCccccccchhhhhhhcccCCCCCCcccceeccccccccccccccccCCcCCHHHHHHhcCcceeeeehhc
Q psy5309 1201 AEHVYQLLGKDLIQNHLTFFIYIHTAIWGDEPEMWPRGIRANGHLLLNSAKMSKSEGNFLTLTEAVKKFSADGMRLCLAD 1280 (1618)
Q Consensus 1201 aEei~~~Lgkd~~svh~~~f~s~~~~~~p~~~~~~p~~v~~hGfvld~G~KMSKSlGNvI~P~~ii~~yGaD~lRl~l~~ 1280 (1618)
..++|+.+++||||+++|+|||||+||||+|.+++++||||++||||++
T Consensus 631 -------------------------------~~~~pk~v~~~G~v~~~G~KMSKS~GNvv~p~d~i~~yGaDalR~~ll~ 679 (967)
T 1wz2_A 631 -------------------------------EEHWPKGIAVNGFGTLEGQKMSKSKGNVLNFIDAIEENGADVVRLYIMS 679 (967)
T ss_dssp -------------------------------STTSCCCEEEECCEEESSSCCCTTTCCCCBHHHHHHTTCHHHHHHHHHH
T ss_pred -------------------------------cccccceEEEeeEEeeCCEEccccccCCCCHHHHHHHhChHHHHHHHHh
Confidence 0023578889999999999999999999999999999999999999998
Q ss_pred cCCCCcCcccCHHHHHHHHHHhhhhhhhhhcccCCCCcchhhHHHHHhhhhhhhhhhHHHHHHHHhhcccccCCCCCCCc
Q psy5309 1281 SGDSVEDANFVESMADAAVKKFSADGMRLCLADSGDSVEDANFVESMADAGILRLYTFIEWVKEILATQSTLRTGSQDSF 1360 (1618)
Q Consensus 1281 ~~~~~~D~~fs~~~l~~~~~~~n~~~~~~~l~n~gnl~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1360 (1618)
++++++|++||++.++++.+.++. ++++++++.. .. .+....+..
T Consensus 680 ~~~~~~d~~fs~~~~~~~~~~l~r------------------------------l~n~~~~~~~---~~--~~~~~~~~~ 724 (967)
T 1wz2_A 680 LAEHDSDFDWRRKEVGKLRKQIER------------------------------FYELISQFAE---YE--VKGNVELKD 724 (967)
T ss_dssp HCCTTCCEEECHHHHHHHHHHHHH------------------------------HHHHHHHHHS---SC--CCCCCCCCH
T ss_pred CCCCCCCcccCHHHHHHHHHHHHH------------------------------HHHHHHHHhc---CC--CCCcccCCH
Confidence 889999999999988876655552 2233222211 10 111234567
Q ss_pred chHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHhhhhcccchhHHHHHHHHHHHHhhcCcchhhHHHH
Q psy5309 1361 NDKVFLSEMNLKIKETEDHYTKMLFKEALRTGFFELQAARDKYRELTAAEGGMHRTLVLRFVEVQALLLCPVCPHVAEHV 1440 (1618)
Q Consensus 1361 ~D~~il~~l~~l~~~v~~~~e~~~f~~a~~~i~~~f~~~~n~Y~~~~~~~~~~~~~~~l~~~~~~a~ll~P~~P~~a~~i 1440 (1618)
+|+|++++++.+++++.++|++|+|+.|++++++.+.+..|+|++.+++
T Consensus 725 ~D~~il~~l~~~~~~v~~~~e~~~f~~A~~~~~~~l~~~~n~Yi~~~k~------------------------------- 773 (967)
T 1wz2_A 725 IDRWMLHRLNKAIKETTNALEEFRTRTAVQWAFYSIMNDLRWYLRRTEG------------------------------- 773 (967)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHTHHHHHHHHHHHHHTTT-------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHHhccc-------------------------------
Confidence 8999999999999999999999999999998765777788999977641
Q ss_pred HHHhcccccchhhhhhhhhhhhhhhhhhhhhhhhhHHHhhhhhhchHHHHHHHHHHHHHHHhccchhhHHHHHHHHcCCC
Q psy5309 1441 EMNLKIKETEDHYTKMLFKEALRTGFFELQAARDKYRELTAAEGGMHRTLVLRFVEVQALLLCPVCPHVAEHVYQLLGKK 1520 (1618)
Q Consensus 1441 ~~~L~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~llaPi~P~~aEeiw~~l~~~ 1520 (1618)
+ .+ .+++++|+++|+.+++|||||+||+|||+|+.|+.+
T Consensus 774 ------------------------~--------~~---------~~~~~~l~~~l~~l~~LLaP~~P~~aEeiw~~L~~~ 812 (967)
T 1wz2_A 774 ------------------------R--------DD---------EAKRYVLRTLADVWVRLMAPFTPHICEELWEKLGGE 812 (967)
T ss_dssp ------------------------C--------CC---------HHHHHHHHHHHHHHHHHHTTTSHHHHHHHHHHSSCC
T ss_pred ------------------------h--------hH---------HHHHHHHHHHHHHHHHHhccccchHHHHHHHhcCCC
Confidence 1 00 146678999999999999999999999999999878
Q ss_pred CceEeccCCCCCC--CCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCccCCCCcccccCCceEEEEEcccCChhHH
Q psy5309 1521 GSIVKARWPEGGP--IDDILVRSSSYLMEAAHAFRLQVKNHILTASKKKGKKVGGGGVGLVEKPTHATVWVAKTFPPWQS 1598 (1618)
Q Consensus 1521 ~sv~~~~~p~~~~--~~~~l~~~~~~~~~~i~~~R~~~~~~~e~~r~~k~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 1598 (1618)
+||+.+.||+.++ .|+.++++++.+++++.++|+.+.++ + +..|.+++|+++ ++|+.
T Consensus 813 ~sv~~~~wP~~~~~~~d~~~~~~~~~~~~~~~~vr~~~~~~----~--------------~~~p~~~~i~~~---~~~~~ 871 (967)
T 1wz2_A 813 GFVSLAKWPEPVEEWWNETIEAEEEFIRSVMEDIKEIIEVA----K--------------IENAKRAYIYTA---EDWKW 871 (967)
T ss_dssp SCGGGSCCCCCCSSCCCHHHHHHHHHHHHHHHHHHHHHHTS----C--------------CCCSBEEEECCC---TTTTT
T ss_pred CceeccCCCCCCcccCCHHHHHHHHHHHHHHHHHHHHHHHh----C--------------CCCCCeEEEEEC---CHHHH
Confidence 8999999999873 58999999999999777777766531 1 134567777776 46776
Q ss_pred HHHHHHH
Q psy5309 1599 IVLTTMK 1605 (1618)
Q Consensus 1599 ~~~~~~~ 1605 (1618)
+.++.+.
T Consensus 872 ~~~~~~~ 878 (967)
T 1wz2_A 872 KVAEVVS 878 (967)
T ss_dssp TTHHHHT
T ss_pred HHHHHHH
Confidence 6665543
No 2
>1ffy_A Isoleucyl-tRNA synthetase; protein-RNA complex, metal IONS, editing tRNA synthetase, double-sieve, ligase/RNA, mupiroci; HET: MRC; 2.20A {Staphylococcus aureus} SCOP: a.27.1.1 b.51.1.1 c.26.1.1 PDB: 1qu2_A* 1qu3_A*
Probab=100.00 E-value=7.2e-120 Score=1197.93 Aligned_cols=777 Identities=18% Similarity=0.228 Sum_probs=582.5
Q ss_pred cccchhhhHHHHHHHHHHhHhCCCccccCCCcCCCCCCCCceeeccccCCCCCcccCcccchhHHhHHHhhhhccccccC
Q psy5309 5 GTFKVEYLQKIEKEVQEEWDREKIYEETVGDAVRSSPDDKFFTTFPFPYMNGRLHLGHTFSLSKFREKIYEETVGDAVRS 84 (1618)
Q Consensus 5 ~~~~~~~~~~~E~~~~~~W~~~~if~~~~~~~~~~~~~~k~~~~~~~py~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (1618)
.|-|+.+++++|++||++|+++++|++..+. +
T Consensus 13 ~fpm~~~~~~~E~~~~~~W~~~~~f~~~~~~------------------------------------------------~ 44 (917)
T 1ffy_A 13 DFPMRGGLPNKEPQIQEKWDAEDQYHKALEK------------------------------------------------N 44 (917)
T ss_dssp CCCSSCCHHHHHHHHHHHHHHTTHHHHHHHH------------------------------------------------T
T ss_pred CCCCCCChHHHhHHHHHHHHHCCCcccchhh------------------------------------------------c
Confidence 4568889999999999999999999886532 1
Q ss_pred CCCCCeEEeCCCCCCCCcchhhhhchhhhhHHHHHHHHHcCCcccccccccCCChhhHHHHHHHHHHHHhcCCCCCCCCC
Q psy5309 85 SPDDKFFTTFPFPYMNGRLHLGHTFSLSKCEFSVRFNRLKGKRVLFPFGFHCTGMPIKACADKLKREMESFGFPPQFPSE 164 (1618)
Q Consensus 85 ~~~~~f~v~~ppP~~nG~LHiGHa~~~~~~D~~aR~~rm~G~~V~~~~G~d~~G~pIe~~a~k~~~~~~~~gi~~~~~e~ 164 (1618)
.++++|+|++|||||||.||||||+|++++|+++||+||+||+|+|++||||||+|||..|++. |+.+
T Consensus 45 ~~~~~f~i~~~pPY~nG~lHiGHa~n~~~~Dii~Ry~rm~G~~v~~~~GwD~hGlpiE~~a~k~-------G~~~----- 112 (917)
T 1ffy_A 45 KGNETFILHDGPPYANGNLHMGHALNKILKDFIVRYKTMQGFYAPYVPGWDTHGLPIEQALTKK-------GVDR----- 112 (917)
T ss_dssp TTSCBCCEECCCCBSSSCCCHHHHHHHHHHHHHHHHHHTTTCBCCCCCEEBCCSHHHHHHHHHH-------TCCS-----
T ss_pred cCCCceeeCCCCCCCCCcchHHHHHHHHHHHHHHHHHHhCCCCCCCcccCchhhHHHHHHHHHc-------CCCc-----
Confidence 2468899999999999999999999999999999999999999999999999999999999862 4431
Q ss_pred CCCCCCCCCCCCchhcccccCcchHHHHHhhhhHHHHHHHHhcCCCHHHHHHHhhhhhHHhhchhHHHHHHHHcCCcccc
Q psy5309 165 DTEPQTDKDDDDPVIKDKSKGKKSKAVAKAGSAKYQWQIMQSLGLEDDEIRKFADASHWLDHFPPLAVQDLRSIGIHVDW 244 (1618)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~~g~~~~~~ak~~~~~~~~~~~~~~g~~~~e~~~f~~~~~~~~~~~~~~~~~l~~lGi~~Dw 244 (1618)
..++.+++++.| ++|+.++++.|+++|++||+++||
T Consensus 113 ------------------------------------------~~~~~~~f~~~~--~~~~~~~~~~~~~~~~rlG~~~Dw 148 (917)
T 1ffy_A 113 ------------------------------------------KKMSTAEFREKC--KEFALEQIELQKKDFRRLGVRGDF 148 (917)
T ss_dssp ------------------------------------------TTTCHHHHHHHH--HHHHHHHHHHHHHHHHTTTCCSCT
T ss_pred ------------------------------------------hhCCHHHHHHHH--HHHHHHHHHHHHHHHHHhCeEEcc
Confidence 023456666665 699999999999999999999999
Q ss_pred cCceeecCCChhhhHHHHHHHHHHHhcCccccCceeEEEecCCCCcccchhhccCCCCCCeeEEEEEEeeccCCcccccc
Q psy5309 245 RRTFITTDSNPFFDSFVRWQFMRLRDRHKIKYGKRYTVFSPRDNQPCMDHDRASGEGVGPQEYTLIKMRLVKPYPAKLCC 324 (1618)
Q Consensus 245 ~~~~~T~d~~p~y~~~v~~~f~~L~~kG~iy~g~~~v~w~p~~~t~lsd~Ev~~~~~~~~~~y~~~~~~~~~~~~~~~~~ 324 (1618)
+++|.|+| |.|.+.++|+|.+|+++|+||+|.+||+|||.|+|+|||+||+|++..+++.|+ +|++.++ .. .
T Consensus 149 d~~~~T~d--~~~~~~v~~~F~~l~~kGliYr~~~~v~wcp~~~T~Lae~eVey~d~~~~~~~v--~f~~~~~-~g---~ 220 (917)
T 1ffy_A 149 NDPYITLK--PEYEAAQIRIFGEMADKGLIYKGKKPVYWSPSSESSLAEAEIEYHDKRSASIYV--AFNVKDD-KG---V 220 (917)
T ss_dssp TSCEETTS--HHHHHHHHHHHHHHHHTTCEEEEEEEEEEETTTTEECCGGGEEEEEEEEEEEEC--CBCCCSS-TT---G
T ss_pred CCCeEcCC--HHHHHHHHHHHHHHHHcCCeEecccceeccCCCCcCcchhhhhcccccCceEEE--EEEeccc-cc---c
Confidence 99999999 899999999999999999999999999999999999999999999988887764 4444321 00 0
Q ss_pred CCCCCcEEEEeecCccccccCceEEeCCCCCceeecccCCccEEEEecccccCccCCCeeEEecCCCCeeEEEcCCCcEE
Q psy5309 325 LDSKPVFLVAATLRPETMYGQTNAWVRPDMAYIALSCLDSKPVFLVAATLRPETMYGQTNAWVRPDMAYIAFTTATGEVF 404 (1618)
Q Consensus 325 ~~~~~~~l~i~TTrPeTl~g~~avaV~P~~~Y~~~~~~~~~~~~iv~~~~~~~t~~Gt~~v~v~P~~~y~~~~~~~~~~~ 404 (1618)
++ ++.+++||||||||||||+||||||+..|+.++. .+ +.++++..+... +
T Consensus 221 ~~-~~~~~~i~TTrP~Tl~~~~av~v~p~~~Y~~v~~-~~-~~~i~a~~~~~~-~------------------------- 271 (917)
T 1ffy_A 221 VD-ADAKFIIWTTTPWTIPSNVAITVHPELKYGQYNV-NG-EKYIIAEALSDA-V------------------------- 271 (917)
T ss_dssp GG-TTCCBCCEESCGGGSSCCBCCCCCTTCCCCCCCT-TT-TCCCCCHHHHHH-H-------------------------
T ss_pred cC-CCCeEEEEeCCcchhhhceEEEECCCCceEEEEe-CC-ceeehHHHHHHH-H-------------------------
Confidence 11 2579999999999999999999999999999854 22 233443332111 0
Q ss_pred EeccccccccccCCCchhhhHHH--HhhhhccCcceecCCEEEeccccceeeccCCchHHHHHHHHhccccccchhhhhh
Q psy5309 405 VCTERSARNMAYQGFTEVEGKIN--VLLRLTGQVCIRSGDECVVALCDQWYLDYGEPTWKAAAEQCLANMNTYHDEVRRN 482 (1618)
Q Consensus 405 i~~~~~~~~~~~~g~~~~~a~~~--ii~~l~~~~l~r~g~~i~~~l~~QWfl~~~~~~~k~~~~~~~~~~~~~p~~~~~~ 482 (1618)
++..|+. +.+ ++.+++|..+. |..+.+++.
T Consensus 272 ---------~~~~~~~----~~~~~~~~~~~G~~l~--g~~~~~P~~--------------------------------- 303 (917)
T 1ffy_A 272 ---------AEALDWD----KASIKLEKEYTGKELE--WVVAQHPFL--------------------------------- 303 (917)
T ss_dssp ---------HTTTTCC----SSCCCCCCCCCTTTCT--TCCCBCCTT---------------------------------
T ss_pred ---------HHhcCcc----cceeeeeeeeeccccc--CCEEECCCC---------------------------------
Confidence 0111111 111 33444555444 444433332
Q ss_pred HhhhhhccccceeeccccCCccCCCCCcchhhccCCCcccceEEEeeccccCcccccCCCCcccccccCCCcceeeeeec
Q psy5309 483 FGASLNWLHEYACSRTYGLGTKLPWDEQWLIESLSDSTIYMAYYTVAHLLQGGTFRGENGNALNIKAEDLTPEVWDYVFF 562 (1618)
Q Consensus 483 ~~~~~~~l~dWciSRq~~WG~~iP~~~~w~i~~~~~~~i~~a~~~~~~~~~~~~~~g~~~~~~~v~~~~gtg~v~~~~~~ 562 (1618)
|..+| ++++ ++|+++.|||+|
T Consensus 304 -------------------~~~~p--------------------vi~~--------------~~V~~~~GTG~V------ 324 (917)
T 1ffy_A 304 -------------------DRESL--------------------VING--------------DHVTTDAGTGCV------ 324 (917)
T ss_dssp -------------------CCSBC--------------------CCCC--------------CSSCCSSSCSCC------
T ss_pred -------------------CCeee--------------------EEec--------------cccccCCCCcee------
Confidence 22355 4433 789999999999
Q ss_pred cCCCCCCCCCCChhhHHHHHhhhccccccceeccccccCCCCchhhhHhhhccchhhhhhhhhhhhhccCCccccCCCCc
Q psy5309 563 KSAPFPPKCRVPKAKLDIMRREFQYWYPVDLRCSGKVSTKLPWDEQWLIESLSDSTIYMAYYTVAHLLQGGTFRGENGNA 642 (1618)
Q Consensus 563 ~~~~~~~~~~~p~~~~~~~~~~f~~wyp~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 642 (1618)
|+ +|+|+ ++||.++.+ | |++
T Consensus 325 ~~--------~Pah~------------~~D~~~~~~----------~------------------------------~L~ 344 (917)
T 1ffy_A 325 HT--------APGHG------------EDDYIVGQQ----------Y------------------------------ELP 344 (917)
T ss_dssp CB--------CTTSC------------SHHHHTTTS----------S------------------------------SCC
T ss_pred Ee--------CCCCC------------HHHHHHHHH----------c------------------------------CCC
Confidence 99 99999 999998877 4 442
Q ss_pred ccccceeeeeccCCCCccccccCCCCCchHHHHHHHhccCCcccHHHHHHHHHHHHhhcccceeee--ecccCCcchHHH
Q psy5309 643 LNINCVIVFQVLPYDPVPIIQVPEYGNLCAVTVYEKLKIQSQNDKDKLQEAKELVYLKGFYDGIML--VGEFKGKKVQEV 720 (1618)
Q Consensus 643 ~~~~~~~~~~~~~~~~~~~i~~~~~g~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~G~~~--~~~~~G~~v~~a 720 (1618)
. +.+| ++ +|.|+ .|+|+|++|++|
T Consensus 345 ~---------------~~~v--d~-------------------------------------~G~~~~~~~~~~G~~v~~A 370 (917)
T 1ffy_A 345 V---------------ISPI--DD-------------------------------------KGVFTEEGGQFEGMFYDKA 370 (917)
T ss_dssp C---------------CCCC--CS-------------------------------------SSCCCTTCSSCSSSCSSHH
T ss_pred e---------------eeeE--CC-------------------------------------CceeCCcccccCCcCHHHH
Confidence 1 1122 11 34444 588999999999
Q ss_pred HHHHHHHHHHhCCcccCCCcccceeeecccccccccCCCCceEeeeCCCchhhHHhhhhcCCCCCcccccccCCeEEEe-
Q psy5309 721 KKLLQKKIDIIGVALKAPVTSHSVIYTLPMLSIREDKGTGIVTSVPSDSPDDYAALVDLKKKPPFREKYHVTDEMCVVA- 799 (1618)
Q Consensus 721 ~~~i~~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~v~~r~g~d~~~~~~l~~~~~~~~~~~H~y~~c~~~- 799 (1618)
|++|+++|++.|++ ++.++++|+||||||+
T Consensus 371 ~~~Ii~~L~~~g~l-------------------------------------------------~~~~~~~hs~p~c~R~~ 401 (917)
T 1ffy_A 371 NKAVTDLLTEKGAL-------------------------------------------------LKLDFITHSYPHDWRTK 401 (917)
T ss_dssp HHTTGGGSSHHHHC-------------------------------------------------CCCEEEEEEEEEETTTC
T ss_pred HHHHHHHHHhCCCc-------------------------------------------------cccccccccCCEecCCC
Confidence 99999999999964 5667899999999997
Q ss_pred ------ccCcceeecCCchHHHHHHHHHhcccccChHHHHHHHHhhcCcCceeecccCCCCcccCCCccccccccCCcce
Q psy5309 800 ------LCDQWYLDYGEPTWKAAAEQCLANMNTYHDEVRRNFGASLNWLHEYACSRTYGLGTKLPWDEQWLIESLSDSTI 873 (1618)
Q Consensus 800 ------~~~QWfi~~~~~~~k~~~~~~i~~v~~~P~~~k~~~~~~l~~l~DW~ISRqr~WG~PIP~d~~w~~e~~~D~~i 873 (1618)
+++|||+++ +++|+++++++++++|+|+++++++.+||++++||||||||+||+|||+ |+|++ +..
T Consensus 402 ~pv~~r~t~QWFi~~--~~lr~~~l~~i~~~~~~P~~~~~r~~~~l~~~~DW~ISRqr~WG~PIP~---~~~~~---g~~ 473 (917)
T 1ffy_A 402 KPVIFRATPQWFASI--SKVRQDILDAIENTNFKVNWGKTRIYNMVRDRGEWVISRQRVWGVPLPV---FYAEN---GEI 473 (917)
T ss_dssp CBCEEEEEEEEEECH--HHHHHHHHHHHHTSEESSHHHHHHHHHHHHHCCCEECEESCSSSCBCCC---EECTT---SCE
T ss_pred CEEEEEeccceEeeH--HHHHHHHHHHHhcCcccCHHHHHHHHHHHhcCccceeeccCCcCcccce---eeCCC---CCE
Confidence 799999999 6899999999999999999999999999999999999999999999999 99974 222
Q ss_pred EeehhHHHH---Hhhc-Cc----------cCCC--CCccCCCCcCCCCCcceeEEecccCCCCCCCCCChhhHHHHHHhh
Q psy5309 874 YMAYYTVAH---LLQG-GT----------FRGE--NGNALNIKAEDLTPEVWDYVFFKAAPFPPKCRVPKAKLDIMRREF 937 (1618)
Q Consensus 874 y~~~~ti~~---~l~~-~~----------~~g~--~~~~l~~~~~~l~~~~~d~~f~~~~~~~~~~~~~~~~~~~~~~~~ 937 (1618)
.+.-.++.+ +.+. |. +.+. .....+...-...+|++|.||+|+..+...... ++.+
T Consensus 474 ~~~~~~~~~i~~~~~~~g~~~W~~~~~~~~~~~~~~~~~~g~~~~~~~~D~lD~WfdSg~~~~~~l~~--------~~~~ 545 (917)
T 1ffy_A 474 IMTKETVNHVADLFAEHGSNIWFEREAKDLLPEGFTHPGSPNGTFTKETDIMDVWFDSGSSHRGVLET--------RPEL 545 (917)
T ss_dssp ECCHHHHHHHHHHHHHHCTHHHHHSCHHHHSSTTCCCSSCTTSCCEECCCEECHHHHHHTHHHHTTTT--------STTC
T ss_pred ecCHHHHHHHHHHhhhcCCcccccCCHHHhcccccccccCCcccccccCCCcCeecCCCCCHHHHcCC--------chhc
Confidence 222222222 2110 00 0000 000000011234568899999887532211000 1122
Q ss_pred ccccccceEeecccccccchhHHHHHHhhccCCCCCCCCccccCCCccchhhhHHHHhhhhhhhhhhcccccccccchhh
Q psy5309 938 QYWYPVDLRCSGKDLIQNHLTFFIYIHTAIWGDEPEMWPRGIRANGHLLLNSAKDLIQNHLTFFIYKLFSDLIQNHLTFF 1017 (1618)
Q Consensus 938 ~~w~p~Dl~v~G~D~~~~Hl~f~lf~h~~lw~~~~~~wp~~lr~~g~~~~~e~~~~i~~~~~~~i~~~~~~~~~~h~~~~ 1017 (1618)
.||+|+|++|+||+|+| ||+.++
T Consensus 546 --~~P~Dl~~~G~D~~r~w------f~~~l~------------------------------------------------- 568 (917)
T 1ffy_A 546 --SFPADMYLEGSDQYRGW------FNSSIT------------------------------------------------- 568 (917)
T ss_dssp --CSSBSEEEEEGGGGTTH------HHHHHH-------------------------------------------------
T ss_pred --CCCceEEEEEecccccH------HHHHHH-------------------------------------------------
Confidence 38999999999988882 222221
Q ss_pred hhhhhhccCCCCCCcCcEEEEccceeeCCccceeccCcccChHHHHhhcCccceEEeecccCcccccccccHHHHHHHHh
Q psy5309 1018 IYIHTAIWGDEPEMWPRGIRANGHLLLNSAKMSKSEGNFLTLTEAVKKFSADGMRLCLADSGDSVEDANFVESMADAGIL 1097 (1618)
Q Consensus 1018 i~~~~~~~p~~~~~~pk~v~~hG~vl~~G~KMSKS~GNvV~p~eii~~yGaDalRl~l~~~~~~~~D~~fs~~~~~~~~~ 1097 (1618)
. +
T Consensus 569 --------~---------------------------------------------------s------------------- 570 (917)
T 1ffy_A 569 --------T---------------------------------------------------S------------------- 570 (917)
T ss_dssp --------H---------------------------------------------------H-------------------
T ss_pred --------H---------------------------------------------------H-------------------
Confidence 0 0
Q ss_pred hHHHHHHHHHHHHHhcccCCCCCCCCcchHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHhcccCcc
Q psy5309 1098 RLYTFIEWVKEILATQSTLRTGSQDSFNDKVFLSEMNLKIKETEDHYTKMLFKEALRTGFFELQAARDKYRELTAAEGGM 1177 (1618)
Q Consensus 1098 kl~N~~~~l~~~l~~~~~~~~~~~~~~~D~~~l~~l~~~i~~v~~~~e~~~f~~al~~~~~~l~~~~n~Yi~~~k~~~~~ 1177 (1618)
.+
T Consensus 571 -----------------------------------------------------~~------------------------- 572 (917)
T 1ffy_A 571 -----------------------------------------------------VA------------------------- 572 (917)
T ss_dssp -----------------------------------------------------HH-------------------------
T ss_pred -----------------------------------------------------HH-------------------------
Confidence 00
Q ss_pred hHHHHHHHHHHHHHhcCcCCCCchhHHHHHhCCCccccccchhhhhhhcccCCCCCCcccceeccccccc-ccccccccc
Q psy5309 1178 HRTLVLRFVEVQALLLCPVCPHVAEHVYQLLGKDLIQNHLTFFIYIHTAIWGDEPEMWPRGIRANGHLLL-NSAKMSKSE 1256 (1618)
Q Consensus 1178 ~~~~l~~~l~~l~~lLaP~~P~~aEei~~~Lgkd~~svh~~~f~s~~~~~~p~~~~~~p~~v~~hGfvld-~G~KMSKSl 1256 (1618)
.. +..||+.+++||||+| +|+|||||+
T Consensus 573 -----------------------------~~-----------------------g~~Pfk~v~~hG~V~d~~G~KMSKSl 600 (917)
T 1ffy_A 573 -----------------------------TR-----------------------GVSPYKFLLSHGFVMDGEGKKMSKSL 600 (917)
T ss_dssp -----------------------------HH-----------------------SSCSBSEEEEECCEECTTSCCCCSSS
T ss_pred -----------------------------hh-----------------------CCCcccceeEeeeEEcCCCcCccccc
Confidence 00 1245799999999999 999999999
Q ss_pred CCcCCHHHHHHhcCcceeeeehhccCCCCcCcccCHHHHHHHHHHhhhhh--hhhhcccCCCCcchhhHHHHHhhhhhhh
Q psy5309 1257 GNFLTLTEAVKKFSADGMRLCLADSGDSVEDANFVESMADAAVKKFSADG--MRLCLADSGDSVEDANFVESMADAGILR 1334 (1618)
Q Consensus 1257 GNvI~P~~ii~~yGaD~lRl~l~~~~~~~~D~~fs~~~l~~~~~~~n~~~--~~~~l~n~gnl~~~~~r~~~~~~~~~~~ 1334 (1618)
||||+|.++|++||||++|||+++ +++++|++||++.+++..+.++..+ +|+.++|+.++
T Consensus 601 GNvV~P~dvi~~yGaDalR~~lls-~~~~~D~~fs~~~l~~~~~~~~kl~n~~r~~l~nl~~~----------------- 662 (917)
T 1ffy_A 601 GNVIVPDQVVKQKGADIARLWVSS-TDYLADVRISDEILKQTSDDYRKIRNTLRFMLGNINDF----------------- 662 (917)
T ss_dssp SCCCCHHHHHHHTCHHHHHHHHHT-SCTTSCEECCHHHHHHHHHHHHHHHHHHHHHHHTSTTC-----------------
T ss_pred CCcCChHHHHHhCCHHHHHHHHhc-cCCCCCcccCHHHHHHHHHHHHHHHHHHHHHHhhhhcc-----------------
Confidence 999999999999999999999999 6999999999999988766665321 22222222111
Q ss_pred hhhHHHHHHHHhhcccccCCCCCCCcchHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHH--HHHHHHHhhhhccc
Q psy5309 1335 LYTFIEWVKEILATQSTLRTGSQDSFNDKVFLSEMNLKIKETEDHYTKMLFKEALRTGFFELQA--ARDKYRELTAAEGG 1412 (1618)
Q Consensus 1335 ~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~il~~l~~l~~~v~~~~e~~~f~~a~~~i~~~f~~--~~n~Y~~~~~~~~~ 1412 (1618)
+......+...+..+|+|++++++++++++.++|++|+|++|++.++ +|+. ++|+|++..+
T Consensus 663 ------------~~~~~~v~~~~l~~~D~~il~~l~~~~~~v~~a~e~~~f~~a~~~l~-~f~~~~l~~~Yl~~~k---- 725 (917)
T 1ffy_A 663 ------------NPDTDSIPESELLEVDRYLLNRLREFTASTINNYENFDYLNIYQEVQ-NFINVELSNFYLDYGK---- 725 (917)
T ss_dssp ------------CHHHHCCCGGGSCHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHH-HHHHCCCCCCHHHHHH----
T ss_pred ------------CcccccCCccccCHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHH-HHHHHHHHHHHHHhcc----
Confidence 10000011123467899999999999999999999999999999985 9986 7888886665
Q ss_pred chhHHHHHHHHHHHHhhcCcchhhHHHHHHHhcccccchhhhhhhhhhhhhhhhhhhhh-hhhhHHHhhhhhhchHHHHH
Q psy5309 1413 MHRTLVLRFVEVQALLLCPVCPHVAEHVEMNLKIKETEDHYTKMLFKEALRTGFFELQA-ARDKYRELTAAEGGMHRTLV 1491 (1618)
Q Consensus 1413 ~~~~~~l~~~~~~a~ll~P~~P~~a~~i~~~L~~~~~~~~~~~~~~~~~~k~~~~~~~~-~~~~~~~~~~~~~~~~~~~l 1491 (1618)
+|+|+... +..|+ .++++|
T Consensus 726 ---------------------------------------------------~rl~~~~~~~~~r~---------~~~~~l 745 (917)
T 1ffy_A 726 ---------------------------------------------------DILYIEQRDSHIRR---------SMQTVL 745 (917)
T ss_dssp ---------------------------------------------------HHHTTSCTTCHHHH---------HHHHHH
T ss_pred ---------------------------------------------------hhhhccCCCcHHHH---------HHHHHH
Confidence 34443221 11121 467789
Q ss_pred HHHHHHHHHHhccchhhHHHHHHHHcCC--CCceEeccCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCC
Q psy5309 1492 LRFVEVQALLLCPVCPHVAEHVYQLLGK--KGSIVKARWPEGGPIDDILVRSSSYLMEAAHAFRLQVKNHILTASKKKGK 1569 (1618)
Q Consensus 1492 ~~~l~~~~~llaPi~P~~aEeiw~~l~~--~~sv~~~~~p~~~~~~~~l~~~~~~~~~~i~~~R~~~~~~~e~~r~~k~~ 1569 (1618)
+++++.+++|||||+||+|||+|+.|+. .+||+.+.||+.++.|+.+++.++.+++ +|..+.++++.+|++|.+
T Consensus 746 ~~~l~~l~~lLaP~~P~~aEeiw~~l~~~~~~sv~~~~wP~~~~~~~~l~~~~~~~~~----v~~~v~~~~~~~R~~~~i 821 (917)
T 1ffy_A 746 YQILVDMTKLLAPILVHTAEEVWSHTPHVKEESVHLADMPKVVEVDQALLDKWRTFMN----LRDDVNRALETARNEKVI 821 (917)
T ss_dssp HHHHHHHHHHHTTTSHHHHHHHHTTSTTCSSSSGGGSCCCCCCCCCHHHHHHHHHHHH----HHHHHHHHHHHHHHTTSC
T ss_pred HHHHHHHHHHhcccccHHHHHHHHHcccCCCCCeEecCCCCCCcchHHHHHHHHHHHH----HHHHHHHHHHHHHHhcCC
Confidence 9999999999999999999999999975 6799999999987667778777666666 999999999999999865
Q ss_pred ccC
Q psy5309 1570 KVG 1572 (1618)
Q Consensus 1570 ~~~ 1572 (1618)
+.+
T Consensus 822 ~~~ 824 (917)
T 1ffy_A 822 GKS 824 (917)
T ss_dssp SSG
T ss_pred CCC
Confidence 443
No 3
>1wkb_A Leucyl-tRNA synthetase; leucine, aminoacyl-tRNA, editing, amino acid, aminoacylation, trnaLeu, structural genomics; 2.05A {Pyrococcus horikoshii}
Probab=100.00 E-value=3.7e-117 Score=1173.97 Aligned_cols=793 Identities=33% Similarity=0.588 Sum_probs=630.0
Q ss_pred hhhHHHHHHHHHHhHhCCCccccCCCcCCCCCCCCceeeccccCCCCCcccCcccchhHHhHHHhhhhccccccCCCCCC
Q psy5309 10 EYLQKIEKEVQEEWDREKIYEETVGDAVRSSPDDKFFTTFPFPYMNGRLHLGHTFSLSKFREKIYEETVGDAVRSSPDDK 89 (1618)
Q Consensus 10 ~~~~~~E~~~~~~W~~~~if~~~~~~~~~~~~~~k~~~~~~~py~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (1618)
-.+.++|++||++|+++++|++..+.+ .++++
T Consensus 4 ~~~~~~E~~~~~~W~~~~~f~~~~~~~------------------------------------------------~~~~~ 35 (810)
T 1wkb_A 4 LNFKAIEEKWQKRWLEAKIFEPNIRDK------------------------------------------------PKEKK 35 (810)
T ss_dssp CCCHHHHHHHHHHHHHTTTTCCCGGGS------------------------------------------------CGGGE
T ss_pred CCHHHHHHHHHHHHHhCCCcccCchhc------------------------------------------------CCCCc
Confidence 357899999999999999999876531 23678
Q ss_pred eEEeCCCCCCCCcchhhhhchhhhhHHHHHHHHHcCCcccccccccCCChhhHHHHHHHHHHHHhcCCCCCCCCCCCCCC
Q psy5309 90 FFTTFPFPYMNGRLHLGHTFSLSKCEFSVRFNRLKGKRVLFPFGFHCTGMPIKACADKLKREMESFGFPPQFPSEDTEPQ 169 (1618)
Q Consensus 90 f~v~~ppP~~nG~LHiGHa~~~~~~D~~aR~~rm~G~~V~~~~G~d~~G~pIe~~a~k~~~~~~~~gi~~~~~e~~~~~~ 169 (1618)
|+|++|||||||+|||||++|++++|+++||+||+||+|++++||||||+||+..|++++. |.
T Consensus 36 ~~i~~~~Py~nG~lHiGH~~~~~~~D~i~R~~rm~G~~V~~~~G~D~~G~pie~~a~~~~~-----~~------------ 98 (810)
T 1wkb_A 36 FYITVAFPYLSGHLHVGHARTYTIPDVIARFKRMQGYNVLFPMAWHITGSPIVGIAERIKN-----RD------------ 98 (810)
T ss_dssp EEEEECCCBTTSCCBHHHHHHHHHHHHHHHHHHHHTCEEECCCCBBCCBSHHHHHHHHHHT-----TC------------
T ss_pred EEEEeCCCCCCCCCccccchhHHHHHHHHHHHHcCCCccCcCCccCCCCChHHHHHHHhcc-----cC------------
Confidence 9999999999999999999999999999999999999999999999999999999886421 00
Q ss_pred CCCCCCCchhcccccCcchHHHHHhhhhHHHHHHHHhcCCCHHHHHHHhhhhhHHhhchhHHHHHHHHcCCcccccCcee
Q psy5309 170 TDKDDDDPVIKDKSKGKKSKAVAKAGSAKYQWQIMQSLGLEDDEIRKFADASHWLDHFPPLAVQDLRSIGIHVDWRRTFI 249 (1618)
Q Consensus 170 ~~~~~~~~~~~~~~~g~~~~~~ak~~~~~~~~~~~~~~g~~~~e~~~f~~~~~~~~~~~~~~~~~l~~lGi~~Dw~~~~~ 249 (1618)
...++.+.+.+|++.++++++.+|++|++++.+.|+++|++||+++||+++|.
T Consensus 99 ---------------------------~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lgi~~Dw~~~~~ 151 (810)
T 1wkb_A 99 ---------------------------PKTIWIYRDVYKVPEEILWTFEDPINIVKYFMKAAKETFIRAGFSVDWSREFY 151 (810)
T ss_dssp ---------------------------HHHHHHHHHTSCCCHHHHHGGGSHHHHHHHHHHHHHHHHHHTTCCCCGGGCCB
T ss_pred ---------------------------chHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCeEEecCCceE
Confidence 00011222345888888888889999999999999999999999999999999
Q ss_pred ecCCChhhhHHHHHHHHHHHhcCccccCceeEEEecCCCCcccchhhccCCCCCCeeEEEEEEeeccCCccccccCCCCC
Q psy5309 250 TTDSNPFFDSFVRWQFMRLRDRHKIKYGKRYTVFSPRDNQPCMDHDRASGEGVGPQEYTLIKMRLVKPYPAKLCCLDSKP 329 (1618)
Q Consensus 250 T~d~~p~y~~~v~~~f~~L~~kG~iy~g~~~v~w~p~~~t~lsd~Ev~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~ 329 (1618)
|++.||.|.+.++|+|.+|+++|+||+|.++|+|||.|+|+|||+||++++.++++.|..++|++.+. .++
T Consensus 152 T~d~~~~~~~~v~~~f~~L~~~Gliy~~~~~v~~~~~~~t~La~~ev~~~~~~~~~~~~~v~f~~~~~---------~~~ 222 (810)
T 1wkb_A 152 TTSLFPPFSKFIEWQFWKLKEKGYIVKGAHRVRWDPVVGTPLGDHDLMEGEDVPILDYIIIKFELREN---------GEV 222 (810)
T ss_dssp CSTTSHHHHHHHHHHHHHHHHTTCEEEEEEEEEEETTTTEECCTTCCSBCSSCCEEEEEEEEEECCSS---------CSC
T ss_pred ecCCchHHHHHHHHHHHHHHHCCCEEECCeeeeccCCcCCCccHHHHhcCCCCccceeEEEEEEccCC---------CCc
Confidence 99977889999999999999999999999999999999999999999999999999999999986321 123
Q ss_pred cEEEEeecCccccccCceEEeCCCCCceeecccCC---ccEEEEecccccCccCCCeeEEecCCCCeeEEEcCCCcEEEe
Q psy5309 330 VFLVAATLRPETMYGQTNAWVRPDMAYIALSCLDS---KPVFLVAATLRPETMYGQTNAWVRPDMAYIAFTTATGEVFVC 406 (1618)
Q Consensus 330 ~~l~i~TTrPeTl~g~~avaV~P~~~Y~~~~~~~~---~~~~iv~~~~~~~t~~Gt~~v~v~P~~~y~~~~~~~~~~~i~ 406 (1618)
.+|+||||||||||||+||||||+..|+.+.. .+ .+.+|++..
T Consensus 223 ~~l~v~TTrP~Tl~g~~av~v~P~~~y~~~~~-~~~~~~~~~i~~~~--------------------------------- 268 (810)
T 1wkb_A 223 IYLPAATLRPETVYGVTNMWVNPNATYVKAKV-RRKDKEETWIVSKE--------------------------------- 268 (810)
T ss_dssp CEEEEEESCGGGGGGCCEEEECTTSCEEEEEE-EETTEEEEEEEEHH---------------------------------
T ss_pred eEEEEEcCCchHhhhhhEEEECCCCcEEEEEe-cCCCcceeeeeHHH---------------------------------
Confidence 68999999999999999999999999998743 11 134444432
Q ss_pred ccccccccccCCCchhhhHHHHhhhhccCcceecCCEEEeccccceeeccCCchHHHHHHHHhccccccchhhhhhHhhh
Q psy5309 407 TERSARNMAYQGFTEVEGKINVLLRLTGQVCIRSGDECVVALCDQWYLDYGEPTWKAAAEQCLANMNTYHDEVRRNFGAS 486 (1618)
Q Consensus 407 ~~~~~~~~~~~g~~~~~a~~~ii~~l~~~~l~r~g~~i~~~l~~QWfl~~~~~~~k~~~~~~~~~~~~~p~~~~~~~~~~ 486 (1618)
...++.+++ ...+++.+++|..+. |..+..+++
T Consensus 269 ---~~~~~~~~~-----~~~~~~~~~~G~~l~--g~~~~~P~~------------------------------------- 301 (810)
T 1wkb_A 269 ---AAYKLSFQD-----REIEVIEEFKGEKLI--GKYVRNPVS------------------------------------- 301 (810)
T ss_dssp ---HHHHHTTSS-----CEEEEEEECTTTTTT--TCEEECSSS-------------------------------------
T ss_pred ---HHHHHHhhh-----cceEEEEEEEchhhc--CCEEECCCC-------------------------------------
Confidence 222222221 012234445555555 666665544
Q ss_pred hhccccceeeccccCCccCCCCCcchhhccCCCcccceEEEeeccccCcccccCCCCcccccccCCCcceeeeeeccCCC
Q psy5309 487 LNWLHEYACSRTYGLGTKLPWDEQWLIESLSDSTIYMAYYTVAHLLQGGTFRGENGNALNIKAEDLTPEVWDYVFFKSAP 566 (1618)
Q Consensus 487 ~~~l~dWciSRq~~WG~~iP~~~~w~i~~~~~~~i~~a~~~~~~~~~~~~~~g~~~~~~~v~~~~gtg~v~~~~~~~~~~ 566 (1618)
|..+| ++++ ++|+++.|||+| |+
T Consensus 302 ---------------~~~ip--------------------i~~~--------------~~V~~~~GTG~V------~~-- 324 (810)
T 1wkb_A 302 ---------------GDEVI--------------------ILPA--------------EFVDPDNATGVV------MS-- 324 (810)
T ss_dssp ---------------CCEEE--------------------EEEC--------------TTSCTTSTTSCE------EE--
T ss_pred ---------------CCeeE--------------------EEec--------------CcccCCCCceeE------Ee--
Confidence 22245 5554 899999999999 99
Q ss_pred CCCCCCCChhhHHHHHhhhccccccceeccccccCCCCchhhhHhhhccchhhhhhhhhhhhhccCCccccCCCCccccc
Q psy5309 567 FPPKCRVPKAKLDIMRREFQYWYPVDLRCSGKVSTKLPWDEQWLIESLSDSTIYMAYYTVAHLLQGGTFRGENGNALNIN 646 (1618)
Q Consensus 567 ~~~~~~~p~~~~~~~~~~f~~wyp~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 646 (1618)
+|+|+ ++||.++.++.++++++++| |++.
T Consensus 325 ------~Pah~------------~~D~~~~~~~~~~~~~~~k~------------------------------~l~~--- 353 (810)
T 1wkb_A 325 ------VPAHA------------PFDHVALEDLKRETEILEKY------------------------------DIDP--- 353 (810)
T ss_dssp ------CTTTC------------HHHHHHHCCCSCCSCCCTTC------------------------------SCCC---
T ss_pred ------CCCCC------------HHHHHHHHhhccchhHHHHc------------------------------CCCh---
Confidence 99999 99999998877777788888 5532
Q ss_pred ceeeeeccCCCCccccccCCCCCchHHHHHHHhccCCcccHHHHHHHHHHHHhhcccceeeeecccCCcchHHHHHHHHH
Q psy5309 647 CVIVFQVLPYDPVPIIQVPEYGNLCAVTVYEKLKIQSQNDKDKLQEAKELVYLKGFYDGIMLVGEFKGKKVQEVKKLLQK 726 (1618)
Q Consensus 647 ~~~~~~~~~~~~~~~i~~~~~g~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~G~~~~~~~~G~~v~~a~~~i~~ 726 (1618)
+++.+++++++|+++++|+++++.++++++|.++.|.+++++|++.+|.++|++|+|+.|+|+|+.|++||+.|++
T Consensus 354 ----~~~~~l~~~~vi~~~~~~~~~~~~~~~~~~i~~~~d~~~~~~~~~~~~~~~~~~G~~~~g~~~G~~v~~a~~~i~~ 429 (810)
T 1wkb_A 354 ----RIVENITYISLIKLEGYGDFPAVEEVNKLGIKSQKDKEKLEQATKTIYKAEYHKGIFKVPPYEGKPVQEVKEAIAK 429 (810)
T ss_dssp ----CCC----------------CCTTCCSGGGTSCCCTTCSCTHHHHHHHHHHHHHSCEECSGGGTTEEHHHHHHHHHH
T ss_pred ----hhcccccceeeeccCCccccchhhhhhhccCCCcchhhhhhhhhhhhhhccccCceEeccCcCCeEHHHhHHHHHH
Confidence 2455677889999999999999999999999999988889999999999999999999999999999999999999
Q ss_pred HHHHhCCcccCCCcccceeeecccccccccCCCCceEeeeCCCchhhHHhhhhcCCCCCcccccccCCeEEEe-ccCcce
Q psy5309 727 KIDIIGVALKAPVTSHSVIYTLPMLSIREDKGTGIVTSVPSDSPDDYAALVDLKKKPPFREKYHVTDEMCVVA-LCDQWY 805 (1618)
Q Consensus 727 ~L~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~v~~r~g~d~~~~~~l~~~~~~~~~~~H~y~~c~~~-~~~QWf 805 (1618)
+|++.|++. ..+.... .+++|||| ..|... +++|||
T Consensus 430 ~L~~~g~~~---------~~~~~~~-----------~~~~~r~g-----------------------~~vi~~~~~~qwF 466 (810)
T 1wkb_A 430 EMLEKGIAE---------IMYEFAE-----------KNVISRFG-----------------------NRAVIKIIHDQWF 466 (810)
T ss_dssp HHHTTTSEE---------EEEEESS-----------SCCBCTTS-----------------------CBCEEEEEEEEEE
T ss_pred HHHhCCCee---------eEEecCC-----------CCcCCCCC-----------------------CEEEEEecCCcee
Confidence 999999642 1121111 13677888 445555 699999
Q ss_pred eecCCchHHHHHHHHHhcccccChHHHHHHHHhhcCcCceeecccCCCCcccCCCccccccccCCcceEeehhHHHHHhh
Q psy5309 806 LDYGEPTWKAAAEQCLANMNTYHDEVRRNFGASLNWLHEYACSRTYGLGTKLPWDEQWLIESLSDSTIYMAYYTVAHLLQ 885 (1618)
Q Consensus 806 i~~~~~~~k~~~~~~i~~v~~~P~~~k~~~~~~l~~l~DW~ISRqr~WG~PIP~d~~w~~e~~~D~~iy~~~~ti~~~l~ 885 (1618)
+++++.+|++++++++++++|+|++.++++.+||++++||||||||+||+|||+|+.|.|++++|+++|+|++++.++++
T Consensus 467 ~~~~~~~~~~~~l~~~~~~~~~P~~~~~~~~~~l~~l~Dw~ISRq~~WG~piP~d~~~~~~~~~~~~iYv~~~~~~~~~~ 546 (810)
T 1wkb_A 467 IDYGNPEWKEKARKALERMKILPETRRAQFEAIIDWLDKKACARKIGLGTPLPWDPEWVIESLSDSTIYMAYYTISRHIN 546 (810)
T ss_dssp ECTTCHHHHHHHHHHHHTSEEESGGGHHHHHHHHHHCCCEECEESSSBSCEETTEEEEEECTTTSSSSHHHHHHHHHHHH
T ss_pred EecChHHHHHHHHhhhcccEEECcchhchHHHHhhcccCccccccCCCCCcCCcCcceecccCCCCceeeehhhhHHHHH
Confidence 99976679999999999999999999999999999999999999999999999988899999999999999999999985
Q ss_pred cCccCCCCCccCCCCcCCCCCcceeEEecccC---C---CCCCCCCChhhHHHHHHhhccccccceEeecccccccchhH
Q psy5309 886 GGTFRGENGNALNIKAEDLTPEVWDYVFFKAA---P---FPPKCRVPKAKLDIMRREFQYWYPVDLRCSGKDLIQNHLTF 959 (1618)
Q Consensus 886 ~~~~~g~~~~~l~~~~~~l~~~~~d~~f~~~~---~---~~~~~~~~~~~~~~~~~~~~~w~p~Dl~v~G~D~~~~Hl~f 959 (1618)
+. .+ ..+++++++.++++||||.+.. . .....+.+...+.+.++.+++|||+|+|++|+||+++|+.|
T Consensus 547 ~~--~~----~~~~~~~~l~~~~~d~~~~~~~~~g~~~~~~~~sg~~~~~~~~~~~~~~~~~p~Di~~~G~D~~~~H~~~ 620 (810)
T 1wkb_A 547 KL--RQ----EGKLDPEKLTPEFFDYIFLEEFSEDKEKELEKKTGIPAEIIHEMKEEFEYWYPLDWRCSGKDLIPNHLTF 620 (810)
T ss_dssp HH--HH----TTCCCGGGCCHHHHHHHHHSCCCHHHHHHHHHHHSCCHHHHHHHHHHHHHHCSCSEEEEEGGGTTTHHHH
T ss_pred Hh--Hh----hcCCCHHHcCccceeeeeccccccCccccchhhhCCCHHHHHhhHHHHHhhCCceEEeecccccccHHHH
Confidence 20 00 1134567788899999975310 0 00011233334444467789999999999999999999988
Q ss_pred HHHHHhhccCCCCCCCCccccCCCccchhhhHHHHhhhhhhhhhhcccccccccchhhhhhhhhccCCCCCCcCcEEEEc
Q psy5309 960 FIYIHTAIWGDEPEMWPRGIRANGHLLLNSAKDLIQNHLTFFIYKLFSDLIQNHLTFFIYIHTAIWGDEPEMWPRGIRAN 1039 (1618)
Q Consensus 960 ~lf~h~~lw~~~~~~wp~~lr~~g~~~~~e~~~~i~~~~~~~i~~~~~~~~~~h~~~~i~~~~~~~p~~~~~~pk~v~~h 1039 (1618)
.++.|.++| +. .++|+.+++|
T Consensus 621 ~~~~~~~~~---------------------------------------------------------~~--~~~pk~v~~~ 641 (810)
T 1wkb_A 621 FIFNHVAIF---------------------------------------------------------RE--EHWPKGIAVN 641 (810)
T ss_dssp HHHHHHHHS---------------------------------------------------------CG--GGSCCEEEEE
T ss_pred HHHHHHHHc---------------------------------------------------------Cc--cccccEEEEE
Confidence 877766664 21 1357999999
Q ss_pred cceeeCCccceeccCcccChHHHHhhcCccceEEeecccCcccccccccHHHHHH---HHhhHHHHHHHHHHHHHhcccC
Q psy5309 1040 GHLLLNSAKMSKSEGNFLTLTEAVKKFSADGMRLCLADSGDSVEDANFVESMADA---GILRLYTFIEWVKEILATQSTL 1116 (1618)
Q Consensus 1040 G~vl~~G~KMSKS~GNvV~p~eii~~yGaDalRl~l~~~~~~~~D~~fs~~~~~~---~~~kl~N~~~~l~~~l~~~~~~ 1116 (1618)
|||+.+|+|||||+||+|+|.+++++||+|++|||+++++++++|++|+++.++. .+++++|+++++.+. ..
T Consensus 642 G~v~~~G~KMSKS~GNvv~p~dli~~yGaDalR~~ll~~~~~~~d~~fs~~~~~~~~~~l~rl~n~~~~~~~~-----~~ 716 (810)
T 1wkb_A 642 GFGTLEGQKMSKSKGNVLNFIDAIEENGADVVRLYIMSLAEHDSDFDWRRKEVGKLRKQIERFYELISQFAEY-----EV 716 (810)
T ss_dssp CCEEETTBCCCTTTTCCCBHHHHHHHHCHHHHHHHHHHHCCTTCCEEECHHHHHHHHHHHHHHHHHHHHHHTC-----CC
T ss_pred eEEEeCCeehhhcCCCcCCHHHHHHHcChHHHHHHHHhcCCCCCCcccCHHHHHHHHHHHHHHHHHHHHHHhc-----cC
Confidence 9999999999999999999999999999999999999888999999999987654 345556655554321 11
Q ss_pred CCCCCCCcchHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHhcccCcch-HHHHHHHHHHHHHhcCc
Q psy5309 1117 RTGSQDSFNDKVFLSEMNLKIKETEDHYTKMLFKEALRTGFFELQAARDKYRELTAAEGGMH-RTLVLRFVEVQALLLCP 1195 (1618)
Q Consensus 1117 ~~~~~~~~~D~~~l~~l~~~i~~v~~~~e~~~f~~al~~~~~~l~~~~n~Yi~~~k~~~~~~-~~~l~~~l~~l~~lLaP 1195 (1618)
+........|+|++++++.+++++.++|++|+|+.|+..+++++.+.+|+|++..++..+.. +.++.++++.+++||+|
T Consensus 717 ~~~~~~~~~d~~ll~~l~~~~~~v~~~~~~~~~~~a~~~~~~~l~~~~n~yi~~~k~~~~~~~~~~l~~~l~~l~~lLaP 796 (810)
T 1wkb_A 717 KGNVELKDIDRWMLHRLNKAIKETTNALEEFRTRTAVQWAFYSIMNDLRWYLRRTEGRDDEAKRYVLRTLADVWVRLMAP 796 (810)
T ss_dssp CSCCCCCHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHTHHHHHHHHHHHHHTTTCCCHHHHHHHHHHHHHHHHHHTT
T ss_pred cccccCCHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHHHHHhh
Confidence 11223456799999999999999999999999999999767899999999999987543334 67899999999999999
Q ss_pred CCCCchhHHHHHhC
Q psy5309 1196 VCPHVAEHVYQLLG 1209 (1618)
Q Consensus 1196 ~~P~~aEei~~~Lg 1209 (1618)
||||+|||||+.||
T Consensus 797 ~~P~~aEelw~~Lg 810 (810)
T 1wkb_A 797 FTPHICEELWEKLG 810 (810)
T ss_dssp TSHHHHHHHHHHCC
T ss_pred hhhHHHHHHHHhcC
Confidence 99999999999986
No 4
>1gax_A Valrs, valyl-tRNA synthetase; protein-RNA complex, rossmann fold, coiled coil, riken structural genomics/proteomics initiative, RSGI; HET: VAA; 2.90A {Thermus thermophilus} SCOP: a.2.7.3 a.27.1.1 b.51.1.1 c.26.1.1 PDB: 1ivs_A* 1iyw_A
Probab=100.00 E-value=7.9e-115 Score=1139.72 Aligned_cols=714 Identities=21% Similarity=0.295 Sum_probs=560.8
Q ss_pred chhhhHHHHHHHHHHhHhCCCccccCCCcCCCCCCCCceeeccccCCCCCcccCcccchhHHhHHHhhhhccccccCCCC
Q psy5309 8 KVEYLQKIEKEVQEEWDREKIYEETVGDAVRSSPDDKFFTTFPFPYMNGRLHLGHTFSLSKFREKIYEETVGDAVRSSPD 87 (1618)
Q Consensus 8 ~~~~~~~~E~~~~~~W~~~~if~~~~~~~~~~~~~~k~~~~~~~py~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (1618)
|.-.+.++|++||++|++ ++|+++.+. ++
T Consensus 5 ~~y~~~~~E~~~~~~W~~-~~f~~~~~~--------------------------------------------------~~ 33 (862)
T 1gax_A 5 KAYDPKSVEPKWAEKWAK-NPFVANPKS--------------------------------------------------GK 33 (862)
T ss_dssp SSCCGGGTHHHHHHHHHH-SCCCCCTTC--------------------------------------------------CS
T ss_pred cCCChHHHHHHHHHHHHh-CCCccCcCC--------------------------------------------------CC
Confidence 344678899999999999 999887532 36
Q ss_pred CCeEEeCCCCCCCCcchhhhhchhhhhHHHHHHHHHcCCcccccccccCCChhhHHHHHHHHHHHHhcCCCCCCCCCCCC
Q psy5309 88 DKFFTTFPFPYMNGRLHLGHTFSLSKCEFSVRFNRLKGKRVLFPFGFHCTGMPIKACADKLKREMESFGFPPQFPSEDTE 167 (1618)
Q Consensus 88 ~~f~v~~ppP~~nG~LHiGHa~~~~~~D~~aR~~rm~G~~V~~~~G~d~~G~pIe~~a~k~~~~~~~~gi~~~~~e~~~~ 167 (1618)
++|+|++|||||||.|||||++|++++|+++||+||+||+|+|++||||||+|||..+++. +...|+.+
T Consensus 34 ~~f~i~~ppPy~nG~lHiGHa~~~~l~Dii~Ry~rm~G~~vl~~~G~D~~Glp~e~~vek~---l~~~g~~~-------- 102 (862)
T 1gax_A 34 PPFVIFMPPPNVTGSLHMGHALDNSLQDALIRYKRMRGFEAVWLPGTDHAGIATQVVVERL---LLKEGKTR-------- 102 (862)
T ss_dssp CEEEEECCCCBSSSCCCHHHHHHHHHHHHHHHHHHTTTSEEEEECEEBCCTHHHHHHHHTT---TTTTTSCC--------
T ss_pred CcEEEEcCCCCCCCCcchhhhHHHHHHHHHHHHHHhCCCccccccccCCCCcHHHHHHHHH---HHHcCCCh--------
Confidence 7899999999999999999999999999999999999999999999999999999888752 11223221
Q ss_pred CCCCCCCCCchhcccccCcchHHHHHhhhhHHHHHHHHhcCCCHHHHHHHhhhhhHHhhchhHHHHHHHHcCCcccccCc
Q psy5309 168 PQTDKDDDDPVIKDKSKGKKSKAVAKAGSAKYQWQIMQSLGLEDDEIRKFADASHWLDHFPPLAVQDLRSIGIHVDWRRT 247 (1618)
Q Consensus 168 ~~~~~~~~~~~~~~~~~g~~~~~~ak~~~~~~~~~~~~~~g~~~~e~~~f~~~~~~~~~~~~~~~~~l~~lGi~~Dw~~~ 247 (1618)
+++|+ +++++. |++|++++.+.++++|++||+++||+++
T Consensus 103 -------------------------------------~~~~~--~~f~~~--~~~~~~~~~~~~~~q~~rlG~s~Dw~r~ 141 (862)
T 1gax_A 103 -------------------------------------HDLGR--EKFLER--VWQWKEESGGTILKQLKRLGASADWSRE 141 (862)
T ss_dssp -------------------------------------SCCCT--THHHHH--HHHHHHHHHHHHHHHHHHTTCCCCGGGC
T ss_pred -------------------------------------HHcCH--HHHHHH--HHHHHHHHHHHHHHHHHHhCccccCCCC
Confidence 01232 223332 5899999999999999999999999999
Q ss_pred eeecCCChhhhHHHHHHHHHHHhcCccccCceeEEEecCCCCcccchhhccCCCCCCeeEEEEEEeeccCCccccccCCC
Q psy5309 248 FITTDSNPFFDSFVRWQFMRLRDRHKIKYGKRYTVFSPRDNQPCMDHDRASGEGVGPQEYTLIKMRLVKPYPAKLCCLDS 327 (1618)
Q Consensus 248 ~~T~d~~p~y~~~v~~~f~~L~~kG~iy~g~~~v~w~p~~~t~lsd~Ev~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~ 327 (1618)
|+|+| |.|.++|+|+|.+|+++|+||+|.++|+|||.|+|+|||+||++++..++..| ++|++. +
T Consensus 142 ~~T~d--~~~~~~v~~~F~~L~~kGliYrg~~~v~wcp~~~T~Lsd~EV~~~e~~g~~~~--v~f~~~-----------~ 206 (862)
T 1gax_A 142 AFTMD--EKRSRAVRYAFSRYYHEGLAYRAPRLVNWCPRCETTLSDLEVETEPTPGKLYT--LRYEVE-----------G 206 (862)
T ss_dssp EETTS--HHHHHHHHHHHHHHHTTSSEEEECCEEEEETTTTEEECGGGEEECCEEEEEEE--EECCCS-----------S
T ss_pred cccCC--HHHHHHHHHHHHHHHHCCCEEecccccccCCCcCccccccccccccccceEEE--EEEEec-----------C
Confidence 99999 88999999999999999999999999999999999999999999887665443 444431 1
Q ss_pred CCcEEEEeecCccccccCceEEeCCCC-CceeecccCCccEEEEecccccCccCCCeeEEecCCCCeeEEEcCCCcEEEe
Q psy5309 328 KPVFLVAATLRPETMYGQTNAWVRPDM-AYIALSCLDSKPVFLVAATLRPETMYGQTNAWVRPDMAYIAFTTATGEVFVC 406 (1618)
Q Consensus 328 ~~~~l~i~TTrPeTl~g~~avaV~P~~-~Y~~~~~~~~~~~~iv~~~~~~~t~~Gt~~v~v~P~~~y~~~~~~~~~~~i~ 406 (1618)
+ .+|+|||||||||+||+||||||++ +|..+ .|+.
T Consensus 207 ~-~~l~v~TTrPeTl~g~~avav~P~~~ry~~l---~G~~---------------------------------------- 242 (862)
T 1gax_A 207 G-GFIEIATVRPETVFADQAIAVHPEDERYRHL---LGKR---------------------------------------- 242 (862)
T ss_dssp S-CCCEEEESCSGGGTTCCCEEECSSCCTTCSC---TTCC----------------------------------------
T ss_pred C-CEEEEEeCCccccccceEEEECCCccHHHHH---cCCE----------------------------------------
Confidence 1 5899999999999999999999997 34322 1111
Q ss_pred ccccccccccCCCchhhhHHHHhhhhccCcceecCCEEEeccccceeeccCCchHHHHHHHHhccccccchhhhhhHhhh
Q psy5309 407 TERSARNMAYQGFTEVEGKINVLLRLTGQVCIRSGDECVVALCDQWYLDYGEPTWKAAAEQCLANMNTYHDEVRRNFGAS 486 (1618)
Q Consensus 407 ~~~~~~~~~~~g~~~~~a~~~ii~~l~~~~l~r~g~~i~~~l~~QWfl~~~~~~~k~~~~~~~~~~~~~p~~~~~~~~~~ 486 (1618)
+..+++
T Consensus 243 -------------------------------------~~~P~~------------------------------------- 248 (862)
T 1gax_A 243 -------------------------------------ARIPLT------------------------------------- 248 (862)
T ss_dssp -------------------------------------CBCTTC-------------------------------------
T ss_pred -------------------------------------EECCCC-------------------------------------
Confidence 111111
Q ss_pred hhccccceeeccccCCccCCCCCcchhhccCCCcccceEEEeeccccCcccccCCCCcccccccCCCcceeeeeeccCCC
Q psy5309 487 LNWLHEYACSRTYGLGTKLPWDEQWLIESLSDSTIYMAYYTVAHLLQGGTFRGENGNALNIKAEDLTPEVWDYVFFKSAP 566 (1618)
Q Consensus 487 ~~~l~dWciSRq~~WG~~iP~~~~w~i~~~~~~~i~~a~~~~~~~~~~~~~~g~~~~~~~v~~~~gtg~v~~~~~~~~~~ 566 (1618)
|..+| ++++ ++|+++.|||+| |+
T Consensus 249 ---------------~~~ip--------------------ii~~--------------~~V~~~~GTG~V------~~-- 271 (862)
T 1gax_A 249 ---------------EVWIP--------------------ILAD--------------PAVEKDFGTGAL------KV-- 271 (862)
T ss_dssp ---------------CCBCC--------------------EEEC--------------TTCCTTSSSSEE------EC--
T ss_pred ---------------CCeee--------------------EEec--------------cccccCCCCcce------Ee--
Confidence 22366 5654 789999999999 99
Q ss_pred CCCCCCCChhhHHHHHhhhccccccceeccccccCCCCchhhhHhhhccchhhhhhhhhhhhhccCCccccCCCCccccc
Q psy5309 567 FPPKCRVPKAKLDIMRREFQYWYPVDLRCSGKVSTKLPWDEQWLIESLSDSTIYMAYYTVAHLLQGGTFRGENGNALNIN 646 (1618)
Q Consensus 567 ~~~~~~~p~~~~~~~~~~f~~wyp~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 646 (1618)
+|+|+ |+||.++.+ | |++
T Consensus 272 ------~Pahd------------~~D~~~~~~----------~------------------------------~L~---- 289 (862)
T 1gax_A 272 ------TPAHD------------PLDYEIGER----------H------------------------------GLK---- 289 (862)
T ss_dssp ------CGGGC------------HHHHHHHHH----------T------------------------------TCC----
T ss_pred ------cCCCC------------chHHHHHHH----------c------------------------------CCC----
Confidence 99999 999998876 4 331
Q ss_pred ceeeeeccCCCCccccccCCCCCchHHHHHHHhccCCcccHHHHHHHHHHHHhhcccceeee--e--cccCCcchHHHHH
Q psy5309 647 CVIVFQVLPYDPVPIIQVPEYGNLCAVTVYEKLKIQSQNDKDKLQEAKELVYLKGFYDGIML--V--GEFKGKKVQEVKK 722 (1618)
Q Consensus 647 ~~~~~~~~~~~~~~~i~~~~~g~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~G~~~--~--~~~~G~~v~~a~~ 722 (1618)
.+++|+. +|+|+ + |+|+|+++++||+
T Consensus 290 -----------~~~~id~---------------------------------------~G~~~~~~~~g~~~Gl~~~~a~~ 319 (862)
T 1gax_A 290 -----------PVSVINL---------------------------------------EGRMEGERVPEALRGLDRFEARR 319 (862)
T ss_dssp -----------CCCSBCT---------------------------------------TSBBCSSSSCTTTSSSBSSHHHH
T ss_pred -----------ccceeCC---------------------------------------CCccccccCCcccCCcCHHHHHH
Confidence 2333321 35554 4 8899999999999
Q ss_pred HHHHHHHHhCCcccCCCcccceeeecccccccccCCCCceEeeeCCCchhhHHhhhhcCCCCCcccccccCCeEEEe---
Q psy5309 723 LLQKKIDIIGVALKAPVTSHSVIYTLPMLSIREDKGTGIVTSVPSDSPDDYAALVDLKKKPPFREKYHVTDEMCVVA--- 799 (1618)
Q Consensus 723 ~i~~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~v~~r~g~d~~~~~~l~~~~~~~~~~~H~y~~c~~~--- 799 (1618)
+|+++|++.|++ ++.+++.|+||||||+
T Consensus 320 ~iv~~L~~~g~l-------------------------------------------------~~~~~~~h~~p~c~R~~~~ 350 (862)
T 1gax_A 320 KAVELFREAGHL-------------------------------------------------VKEEDYTIALATCSRCGTP 350 (862)
T ss_dssp HHHHHHHTTTCE-------------------------------------------------EEEEEEEECCEEETTTCSB
T ss_pred HHHHHHHhCCCe-------------------------------------------------eeeccccccCCeecCCCCe
Confidence 999999999965 4567889999999997
Q ss_pred ----ccCcceeecCCchHHHHHHHHHh--cccccChHHHHHHHHhhcCcCceeecccCCCCcccCCCccccccccCCcce
Q psy5309 800 ----LCDQWYLDYGEPTWKAAAEQCLA--NMNTYHDEVRRNFGASLNWLHEYACSRTYGLGTKLPWDEQWLIESLSDSTI 873 (1618)
Q Consensus 800 ----~~~QWfi~~~~~~~k~~~~~~i~--~v~~~P~~~k~~~~~~l~~l~DW~ISRqr~WG~PIP~d~~w~~e~~~D~~i 873 (1618)
+++|||+++ ++++++++++++ +++|+|++.++++.+||++++||||||||+||+|||+ |+|++| +++
T Consensus 351 i~~~~~~qWFv~~--~~~~~~~l~~v~~~~~~~~P~~~~~~~~~wl~~l~DW~ISRqr~WG~pIP~---w~~~~~--~~i 423 (862)
T 1gax_A 351 IEYAIFPQWWLRM--RPLAEEVLKGLRRGDIAFVPERWKKVNMDWLENVKDWNISRQLWWGHQIPA---WYCEDC--QAV 423 (862)
T ss_dssp CCEEECCEEEECH--HHHHHHHHHHHHHTCCEESSSHHHHHHHHHHHTCCCCCCBCCCSSSCCCCC---EEETTT--CCE
T ss_pred EEEEecceEEEEh--HHHHHHHHHHHHcCCceEcCHHHHHHHHHHHhcccceeEecccCCCcccCc---eecCCC--CEE
Confidence 799999999 699999999995 6999999999999999999999999999999999999 999854 679
Q ss_pred EeehhHHHHHhhcCccCCCCCccCCCCcCCCCCcceeEEecccCCCCCCCCCChhhHHHHHHhhccccccceEeeccccc
Q psy5309 874 YMAYYTVAHLLQGGTFRGENGNALNIKAEDLTPEVWDYVFFKAAPFPPKCRVPKAKLDIMRREFQYWYPVDLRCSGKDLI 953 (1618)
Q Consensus 874 y~~~~ti~~~l~~~~~~g~~~~~l~~~~~~l~~~~~d~~f~~~~~~~~~~~~~~~~~~~~~~~~~~w~p~Dl~v~G~D~~ 953 (1618)
||+... ++..... . ...++.......+|++|+||+|+..+-...+.+.+ .+.+++|||+|++++|+|++
T Consensus 424 ~v~~~~--~l~~~~~---~-~~~~g~~~~~r~~DvlDtWfdS~~~~~~~~~~p~~-----~~~~~~~~P~d~~v~G~Dii 492 (862)
T 1gax_A 424 NVPRPE--RYLEDPT---S-CEACGSPRLKRDEDVFDTWFSSALWPLSTLGWPEE-----TEDLKAFYPGDVLVTGYDIL 492 (862)
T ss_dssp ECCCGG--GTTCCCC---S-CTTTCCSCEEECCCCBCHHHHHTSCTTGGGTTTSC-----CHHHHHSCSBSCEEEEGGGT
T ss_pred EEeccc--cccccch---h-hhhcCchheecCCcccceeeccCCcchhhccCCCc-----hHHHHhhCCceEEecCcccc
Confidence 988742 1221100 0 01111112345689999999998633223333322 24688999999999999988
Q ss_pred ccchhHHHHHHhhccCCCCCCCCccccCCCccchhhhHHHHhhhhhhhhhhcccccccccchhhhhhhhhccCCCCCCcC
Q psy5309 954 QNHLTFFIYIHTAIWGDEPEMWPRGIRANGHLLLNSAKDLIQNHLTFFIYKLFSDLIQNHLTFFIYIHTAIWGDEPEMWP 1033 (1618)
Q Consensus 954 ~~Hl~f~lf~h~~lw~~~~~~wp~~lr~~g~~~~~e~~~~i~~~~~~~i~~~~~~~~~~h~~~~i~~~~~~~p~~~~~~p 1033 (1618)
++|... +
T Consensus 493 ~~W~a~-------~------------------------------------------------------------------ 499 (862)
T 1gax_A 493 FLWVSR-------M------------------------------------------------------------------ 499 (862)
T ss_dssp TTTHHH-------H------------------------------------------------------------------
T ss_pred ccHHHH-------H------------------------------------------------------------------
Confidence 772000 0
Q ss_pred cEEEEccceeeCCccceeccCcccChHHHHhhcCccceEEeecccCcccccccccHHHHHHHHhhHHHHHHHHHHHHHhc
Q psy5309 1034 RGIRANGHLLLNSAKMSKSEGNFLTLTEAVKKFSADGMRLCLADSGDSVEDANFVESMADAGILRLYTFIEWVKEILATQ 1113 (1618)
Q Consensus 1034 k~v~~hG~vl~~G~KMSKS~GNvV~p~eii~~yGaDalRl~l~~~~~~~~D~~fs~~~~~~~~~kl~N~~~~l~~~l~~~ 1113 (1618)
+
T Consensus 500 ----------------------------------------------------------------------------~--- 500 (862)
T 1gax_A 500 ----------------------------------------------------------------------------E--- 500 (862)
T ss_dssp ----------------------------------------------------------------------------H---
T ss_pred ----------------------------------------------------------------------------H---
Confidence 0
Q ss_pred ccCCCCCCCCcchHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHhcccCcchHHHHHHHHHHHHHhc
Q psy5309 1114 STLRTGSQDSFNDKVFLSEMNLKIKETEDHYTKMLFKEALRTGFFELQAARDKYRELTAAEGGMHRTLVLRFVEVQALLL 1193 (1618)
Q Consensus 1114 ~~~~~~~~~~~~D~~~l~~l~~~i~~v~~~~e~~~f~~al~~~~~~l~~~~n~Yi~~~k~~~~~~~~~l~~~l~~l~~lL 1193 (1618)
+..
T Consensus 501 -------------------------------------------~~~---------------------------------- 503 (862)
T 1gax_A 501 -------------------------------------------VSG---------------------------------- 503 (862)
T ss_dssp -------------------------------------------HHH----------------------------------
T ss_pred -------------------------------------------HHH----------------------------------
Confidence 000
Q ss_pred CcCCCCchhHHHHHhCCCccccccchhhhhhhcccCCCCCCcccceeccccccc-cccccccccCCcCCHHHHHHhcCcc
Q psy5309 1194 CPVCPHVAEHVYQLLGKDLIQNHLTFFIYIHTAIWGDEPEMWPRGIRANGHLLL-NSAKMSKSEGNFLTLTEAVKKFSAD 1272 (1618)
Q Consensus 1194 aP~~P~~aEei~~~Lgkd~~svh~~~f~s~~~~~~p~~~~~~p~~v~~hGfvld-~G~KMSKSlGNvI~P~~ii~~yGaD 1272 (1618)
.... +..|++.+++||+++| +|+|||||+||||+|.++|++||||
T Consensus 504 -----------~~~~-----------------------g~~Pfk~v~~hG~vld~~G~KMSKSlGNvIdP~dli~~yGaD 549 (862)
T 1gax_A 504 -----------YHFM-----------------------GERPFKTVLLHGLVLDEKGQKMSKSKGNVIDPLEMVERYGAD 549 (862)
T ss_dssp -----------HHHS-----------------------SSCSBSEEEEECCEECTTSCBCCTTTTCCCCHHHHHHHHCHH
T ss_pred -----------HHhc-----------------------CCCcccEEEEeeeEEcCCCCCccccCCCCCCHHHHHHHcChH
Confidence 0000 1245799999999998 9999999999999999999999999
Q ss_pred eeeeehhccCCCCcCcccCHHHHHHHHHHhhhhhhhhhcccCCCCcchhhHHHHHhhhhhhhhhhHHHHHHHHhhccccc
Q psy5309 1273 GMRLCLADSGDSVEDANFVESMADAAVKKFSADGMRLCLADSGDSVEDANFVESMADAGILRLYTFIEWVKEILATQSTL 1352 (1618)
Q Consensus 1273 ~lRl~l~~~~~~~~D~~fs~~~l~~~~~~~n~~~~~~~l~n~gnl~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1352 (1618)
+|||||++.+++++|++||++.+++..+.+|+ ++|+.+|+...+++..+.
T Consensus 550 alR~~ll~~~~~~~D~~fs~~~l~~~~~f~nk------------------------------l~N~~rf~~~~~~~~~~~ 599 (862)
T 1gax_A 550 ALRFALIYLATGGQDIRLDLRWLEMARNFANK------------------------------LYNAARFVLLSREGFQAK 599 (862)
T ss_dssp HHHHHHHHHCCTTCCEECCHHHHHHHHHHHHH------------------------------HHHHHHHHHHHSSSCCCC
T ss_pred HHHHHHHhcCCCCCCCccCHHHHHHHHHHHHH------------------------------HHHHHHHHHhcccCCCCc
Confidence 99999999889999999999998886655552 233334443333332111
Q ss_pred CCCCCCCcchHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHH--HHHHHHHHhhhhcccchhHHHHHHHHHHHHhhc
Q psy5309 1353 RTGSQDSFNDKVFLSEMNLKIKETEDHYTKMLFKEALRTGFFELQ--AARDKYRELTAAEGGMHRTLVLRFVEVQALLLC 1430 (1618)
Q Consensus 1353 ~~~~~~~~~D~~il~~l~~l~~~v~~~~e~~~f~~a~~~i~~~f~--~~~n~Y~~~~~~~~~~~~~~~l~~~~~~a~ll~ 1430 (1618)
...+...|+|+++++++++++++++|++|+|+.|+++++ +|+ .++|+|++.+++
T Consensus 600 --~~~~~~~D~~il~~l~~~~~~v~~a~e~~~f~~A~~~l~-~f~~~~~~n~Yie~~k~--------------------- 655 (862)
T 1gax_A 600 --EDTPTLADRFMRSRLSRGVEEITALYEALDLAQAAREVY-ELVWSEFCDWYLEAAKP--------------------- 655 (862)
T ss_dssp --BCCCCHHHHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHH-HHHHHHTTTTHHHHHHH---------------------
T ss_pred --cccCCHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHH-HHHHHHhhHHHHHHcch---------------------
Confidence 123567899999999999999999999999999999985 998 488888877652
Q ss_pred CcchhhHHHHHHHhcccccchhhhhhhhhhhhhhhhhhhhhhhhhHHHhhhhhhchHHHHHHHHHHHHHHHhccchhhHH
Q psy5309 1431 PVCPHVAEHVEMNLKIKETEDHYTKMLFKEALRTGFFELQAARDKYRELTAAEGGMHRTLVLRFVEVQALLLCPVCPHVA 1510 (1618)
Q Consensus 1431 P~~P~~a~~i~~~L~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~llaPi~P~~a 1510 (1618)
|++.+ + ..++++|.++|+.+++|||||+||+|
T Consensus 656 ----------------------------------~l~~~-----~---------~~~~~~l~~~l~~~~~lL~P~~P~~a 687 (862)
T 1gax_A 656 ----------------------------------ALKAG-----N---------AHTLRTLEEVLAVLLKLLHPMMPFLT 687 (862)
T ss_dssp ----------------------------------HHHTT-----B---------HHHHHHHHHHHHHHHHHHTTTSHHHH
T ss_pred ----------------------------------hhhcc-----H---------HHHHHHHHHHHHHHHHHHhhhhhHHH
Confidence 32211 0 14567889999999999999999999
Q ss_pred HHHHHHcCCCCceEeccCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q psy5309 1511 EHVYQLLGKKGSIVKARWPEGGPIDDILVRSSSYLMEAAHAFRLQVKN 1558 (1618)
Q Consensus 1511 Eeiw~~l~~~~sv~~~~~p~~~~~~~~l~~~~~~~~~~i~~~R~~~~~ 1558 (1618)
||+|+.|+..+||+.+.||+.+..|..++++++.+++++.++|+.+.+
T Consensus 688 Eeiw~~L~~~~sv~~~~wP~~~~~d~~~~~~~~~~~~v~~~~r~~r~~ 735 (862)
T 1gax_A 688 SELYQALTGKEELALEAWPEPGGRDEEAERAFEALKQAVTAVRALKAE 735 (862)
T ss_dssp HHHHHHHHCCSCGGGSCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhcCCCCeEEecCCCCCCcCCHHHHHHHHHHHHHHHHHHHhhhh
Confidence 999999976789999999998766899999999999998888887765
No 5
>1ile_A Ilers, isoleucyl-tRNA synthetase; aminoacyl-tRNA synthetase, riken structural genomics/proteom initiative, RSGI, structural genomics; 2.50A {Thermus thermophilus} SCOP: a.27.1.1 b.51.1.1 c.26.1.1 PDB: 1jzq_A* 1jzs_A*
Probab=100.00 E-value=3.9e-109 Score=1094.93 Aligned_cols=739 Identities=19% Similarity=0.260 Sum_probs=555.1
Q ss_pred chhhhHHHHHHHHHHhHhCCCccccCCCcCCCCCCCCceeeccccCCCCCcccCcccchhHHhHHHhhhhccccccCCCC
Q psy5309 8 KVEYLQKIEKEVQEEWDREKIYEETVGDAVRSSPDDKFFTTFPFPYMNGRLHLGHTFSLSKFREKIYEETVGDAVRSSPD 87 (1618)
Q Consensus 8 ~~~~~~~~E~~~~~~W~~~~if~~~~~~~~~~~~~~k~~~~~~~py~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (1618)
|+.+++++|++||++|+++++|++..+.+ .++
T Consensus 6 ~~~~~~~~E~~~~~~W~~~~~f~~~~~~~------------------------------------------------~~~ 37 (821)
T 1ile_A 6 GEPNFPKLEEEVLAFWKREKIFQKSVENR------------------------------------------------KGG 37 (821)
T ss_dssp CCCCHHHHHHHHHHHHHHTTHHHHHHHHT------------------------------------------------TTS
T ss_pred cCCCHHHHHHHHHHHHHHCCCcccChhhc------------------------------------------------CCC
Confidence 66788999999999999999998875421 246
Q ss_pred CCeEEeCCCCCCCCcchhhhhchhhhhHHHHHHHHHcCCcccccccccCCChhhHHHHHHHHHHHHhcCCCCCCCCCCCC
Q psy5309 88 DKFFTTFPFPYMNGRLHLGHTFSLSKCEFSVRFNRLKGKRVLFPFGFHCTGMPIKACADKLKREMESFGFPPQFPSEDTE 167 (1618)
Q Consensus 88 ~~f~v~~ppP~~nG~LHiGHa~~~~~~D~~aR~~rm~G~~V~~~~G~d~~G~pIe~~a~k~~~~~~~~gi~~~~~e~~~~ 167 (1618)
++|++++|||||||.|||||++|++++|+++||+||+||+|++++||||||+|||..|++. .|+.+
T Consensus 38 ~~f~i~~~pPy~nG~lHiGH~~~~~~~D~i~R~~rm~G~~v~~~~G~D~~Glpie~~a~k~------l~~~~-------- 103 (821)
T 1ile_A 38 PRYTVYEGPPTANGLPHVGHAQARSYKDLFPRYKTMRGYYAPRRAGWDTHGLPVELEVEKK------LGLKS-------- 103 (821)
T ss_dssp CBCCBCCCCCCTTSCCCTTHHHHHHHHHHHHHHHHHTTCBCCCEEEECCCHHHHHHHHHHH------TTCCS--------
T ss_pred CcEEEecCCCCCCCCCchhhhHhHHHHHHHHHHHHhcCCcccccccccCCCchHHHHHHHH------hcccc--------
Confidence 8899999999999999999999999999999999999999999999999999999999862 23221
Q ss_pred CCCCCCCCCchhcccccCcchHHHHHhhhhHHHHHHHHhcCCCHHHHHHHhhhhhHHhhchhHHHHHHHHcCCcccccCc
Q psy5309 168 PQTDKDDDDPVIKDKSKGKKSKAVAKAGSAKYQWQIMQSLGLEDDEIRKFADASHWLDHFPPLAVQDLRSIGIHVDWRRT 247 (1618)
Q Consensus 168 ~~~~~~~~~~~~~~~~~g~~~~~~ak~~~~~~~~~~~~~~g~~~~e~~~f~~~~~~~~~~~~~~~~~l~~lGi~~Dw~~~ 247 (1618)
+ +..+++| .+++++. |++|++++.+.|+++|++||+++||+++
T Consensus 104 ---------------------~------------~~~~~~g--~~~f~~~--~~~~~~~~~~~~~~~~~~lg~~~dwd~~ 146 (821)
T 1ile_A 104 ---------------------K------------REIEAYG--IERFNQA--CRESVFTYEKEWEAFTERIAYWVDLEDA 146 (821)
T ss_dssp ---------------------H------------HHHHHHC--HHHHHHH--HHHHTTTTHHHHTTHHHHTTCCCEEEEE
T ss_pred ---------------------c------------chHhhcC--HHHHHHH--HHHHHHHHHHHHHHHHHHhCCeEccCCC
Confidence 0 0112233 3444444 4799999999999999999999999999
Q ss_pred eeecCCChhhhHHHHHHHHHHHhcCccccCceeEEEecCCCCcccchhhc--cCCCCCCeeEEEEEEeeccCCccccccC
Q psy5309 248 FITTDSNPFFDSFVRWQFMRLRDRHKIKYGKRYTVFSPRDNQPCMDHDRA--SGEGVGPQEYTLIKMRLVKPYPAKLCCL 325 (1618)
Q Consensus 248 ~~T~d~~p~y~~~v~~~f~~L~~kG~iy~g~~~v~w~p~~~t~lsd~Ev~--~~~~~~~~~y~~~~~~~~~~~~~~~~~~ 325 (1618)
|.|+| |.|.+.++|+|.+|+++|+||+|.++|+|||.|+|+|||+||. +.+..+++.| ++|++.+..+.
T Consensus 147 ~~T~d--~~~~~~v~~~f~~L~~~Gliy~~~~~v~wcp~~~t~Lad~ev~~G~~~~~~~~~~--v~f~~~~~~~~----- 217 (821)
T 1ile_A 147 YATLE--PTYIESIWWSLKNLFDRGLLYRDHKVVPYCPRCGTPLSSHEVALGYKEIQDPSVY--VRFPLKEPKKL----- 217 (821)
T ss_dssp EETTS--HHHHHHHHHHHHHHHHTTCEEEECCEEEEETTTTEECCHHHHHHTEEEEEEEEEE--EEEEBSSGGGG-----
T ss_pred eEECC--HHHHHHHHHHHHHHHHcCCeeecCcceEecCCCCCcccHhHhhcCcccccCceEE--EEEEecCCccc-----
Confidence 99999 8899999999999999999999999999999999999999995 5566666665 55554321000
Q ss_pred CCCCcEEEEeecCccccccCceEEeCCCCCceeecccCCccEEEEecccccCccCCCeeEEecCCCCeeEEEcCCCcEEE
Q psy5309 326 DSKPVFLVAATLRPETMYGQTNAWVRPDMAYIALSCLDSKPVFLVAATLRPETMYGQTNAWVRPDMAYIAFTTATGEVFV 405 (1618)
Q Consensus 326 ~~~~~~l~i~TTrPeTl~g~~avaV~P~~~Y~~~~~~~~~~~~iv~~~~~~~t~~Gt~~v~v~P~~~y~~~~~~~~~~~i 405 (1618)
...+.+|+||||||||||||+||||||+..|+.+.. +++.+|++...... +.+
T Consensus 218 ~~~~~~l~v~TTrP~Tl~g~~av~v~p~~~y~~~~~--~~~~~i~a~~~~~~-~~~------------------------ 270 (821)
T 1ile_A 218 GLEKASLLIWTTTPWTLPGNVAAAVHPEYTYAAFQV--GDEALILEEGLGRK-LLG------------------------ 270 (821)
T ss_dssp TCSSEEEEEEESCGGGGGGCCCEEECTTSCEEEEEE--TTEEEEEETTHHHH-HTC------------------------
T ss_pred CCCCCEEEEEcCCChhhhhcEEEEECCCCceeEEEc--CCcEEEehHHHHHH-HHh------------------------
Confidence 113579999999999999999999999999999864 34455655442211 000
Q ss_pred eccccccccccCCCchhhhHHHHhhhhccCcceecCCEEEeccccceeeccCCchHHHHHHHHhccccccchhhhhhHhh
Q psy5309 406 CTERSARNMAYQGFTEVEGKINVLLRLTGQVCIRSGDECVVALCDQWYLDYGEPTWKAAAEQCLANMNTYHDEVRRNFGA 485 (1618)
Q Consensus 406 ~~~~~~~~~~~~g~~~~~a~~~ii~~l~~~~l~r~g~~i~~~l~~QWfl~~~~~~~k~~~~~~~~~~~~~p~~~~~~~~~ 485 (1618)
+ ..+++.+++|..+. |..+.++++ ++
T Consensus 271 -----------~-------~~~~~~~~~G~~l~--g~~~~~p~~---~~------------------------------- 296 (821)
T 1ile_A 271 -----------E-------GTQVLKTFPGKALE--GLPYTPPYP---QA------------------------------- 296 (821)
T ss_dssp -----------T-------TSCEEEEECHHHHT--TCBBCCSSC---CC-------------------------------
T ss_pred -----------h-------CcEEEEEechHHhc--CCEEEcCCc---cc-------------------------------
Confidence 0 11233344444444 333333222 00
Q ss_pred hhhccccceeeccccCCccCCCCCcchhhccCCCcccceEEEeeccccCcccccCCCCcccccccCCCcceeeeeeccCC
Q psy5309 486 SLNWLHEYACSRTYGLGTKLPWDEQWLIESLSDSTIYMAYYTVAHLLQGGTFRGENGNALNIKAEDLTPEVWDYVFFKSA 565 (1618)
Q Consensus 486 ~~~~l~dWciSRq~~WG~~iP~~~~w~i~~~~~~~i~~a~~~~~~~~~~~~~~g~~~~~~~v~~~~gtg~v~~~~~~~~~ 565 (1618)
+ |..+| ++++ ++|+++.|||+| |+
T Consensus 297 ----------~-----~~~~p--------------------i~~~--------------~~V~~~~GTG~V------~~- 320 (821)
T 1ile_A 297 ----------L-----EKGYF--------------------VVLA--------------DYVSQEDGTGIV------HQ- 320 (821)
T ss_dssp ----------C-----SSCSB--------------------EEEC--------------TTCCSSSSCSCE------EC-
T ss_pred ----------C-----CCEEE--------------------EEec--------------CcCccCCCCcce------Ee-
Confidence 0 22355 5554 799999999999 99
Q ss_pred CCCCCCCCChhhHHHHHhhhccccccceeccccccCCCCchhhhHhhhccchhhhhhhhhhhhhccCCccccCCCCcccc
Q psy5309 566 PFPPKCRVPKAKLDIMRREFQYWYPVDLRCSGKVSTKLPWDEQWLIESLSDSTIYMAYYTVAHLLQGGTFRGENGNALNI 645 (1618)
Q Consensus 566 ~~~~~~~~p~~~~~~~~~~f~~wyp~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 645 (1618)
+|+|+ ++||+++.+ | |++
T Consensus 321 -------~Pah~------------~~D~~~~~~----------~------------------------------~l~--- 338 (821)
T 1ile_A 321 -------APAFG------------AEDLETARV----------Y------------------------------GLP--- 338 (821)
T ss_dssp -------CTTSC------------HHHHHHHHH----------T------------------------------TCC---
T ss_pred -------cCCCC------------HHHHHHHHH----------c------------------------------CCC---
Confidence 99999 999998876 4 432
Q ss_pred cceeeeeccCCCCccccccCCCCCchHHHHHHHhccCCcccHHHHHHHHHHHHhhcccceeee-ecccCCcchHHHHHHH
Q psy5309 646 NCVIVFQVLPYDPVPIIQVPEYGNLCAVTVYEKLKIQSQNDKDKLQEAKELVYLKGFYDGIML-VGEFKGKKVQEVKKLL 724 (1618)
Q Consensus 646 ~~~~~~~~~~~~~~~~i~~~~~g~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~G~~~-~~~~~G~~v~~a~~~i 724 (1618)
.+.+|+ . +|+|+ .| |+|+.+++||++|
T Consensus 339 ------------~~~~id--~-------------------------------------~G~~~~~~-~~G~~~~~a~~~i 366 (821)
T 1ile_A 339 ------------LLKTVD--E-------------------------------------EGKLLVEP-FKGLYFREANRAI 366 (821)
T ss_dssp ------------CCCCBC--T-------------------------------------TSBBCSGG-GTTCBHHHHHHHH
T ss_pred ------------cceeEC--C-------------------------------------CCcCcccC-cCCCCHHHHHHHH
Confidence 122232 1 34444 35 9999999999999
Q ss_pred HHHHHHhCCcccCCCcccceeeecccccccccCCCCceEeeeCCCchhhHHhhhhcCCCCCcccccccCCeEEEe-----
Q psy5309 725 QKKIDIIGVALKAPVTSHSVIYTLPMLSIREDKGTGIVTSVPSDSPDDYAALVDLKKKPPFREKYHVTDEMCVVA----- 799 (1618)
Q Consensus 725 ~~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~v~~r~g~d~~~~~~l~~~~~~~~~~~H~y~~c~~~----- 799 (1618)
+++|++.|++ ++.++|+|+||||||+
T Consensus 367 ~~~L~~~g~~-------------------------------------------------~~~~~~~h~~p~c~r~~~~~~ 397 (821)
T 1ile_A 367 LRDLRGRGLL-------------------------------------------------FKEESYLHSYPHCWRCSTPLM 397 (821)
T ss_dssp HHHHHHTTCE-------------------------------------------------EEEEEEEEEEEBCSSSCCBCE
T ss_pred HHHHHhCCCe-------------------------------------------------eeeecccccCCEecCCCCEEE
Confidence 9999999964 4567889999999987
Q ss_pred --ccCcceeecCCchHHHHHHHHHhcccccChHHH-HHHHHhhcCcCceeecccCCCCcccCCCccccccccCCcceEee
Q psy5309 800 --LCDQWYLDYGEPTWKAAAEQCLANMNTYHDEVR-RNFGASLNWLHEYACSRTYGLGTKLPWDEQWLIESLSDSTIYMA 876 (1618)
Q Consensus 800 --~~~QWfi~~~~~~~k~~~~~~i~~v~~~P~~~k-~~~~~~l~~l~DW~ISRqr~WG~PIP~d~~w~~e~~~D~~iy~~ 876 (1618)
+++|||+++ ++|++++++++++++|+|++.+ +++.+||++++||||||||+||+|||+ |+|++|+. ++ .
T Consensus 398 ~~~~~qWF~~~--~~~~~~~~~~~~~~~~~P~~~~~~~~~~~l~~l~DW~ISRqr~WG~pIP~---~~~~~~~~--~~-v 469 (821)
T 1ile_A 398 YYATESWFIKN--TLFKDELIRNNQEIHWVPPHIKEGRYGEWLKNLVDWALSRNRYWGTPLPI---WVCQACGK--EE-A 469 (821)
T ss_dssp EEECCEEEECG--GGGHHHHHHHHHHSEESSGGGTTTTTHHHHHTCCCEECCBCCSSSCBCCE---EEESSSSC--CE-E
T ss_pred EEecchhhhch--HHHHHHHHHHhcCeEEECchhhHhHHHHHHhCCchheecccCCCCCeeeE---EEecCCCc--EE-e
Confidence 799999999 6899999999999999999995 599999999999999999999999999 99987642 22 2
Q ss_pred hhHHHHHhhcC-ccC-C-CCC-----ccC-----CCCcCCCCCcceeEEecccCC-CCCCCCCChhhHHHHHHhhccccc
Q psy5309 877 YYTVAHLLQGG-TFR-G-ENG-----NAL-----NIKAEDLTPEVWDYVFFKAAP-FPPKCRVPKAKLDIMRREFQYWYP 942 (1618)
Q Consensus 877 ~~ti~~~l~~~-~~~-g-~~~-----~~l-----~~~~~~l~~~~~d~~f~~~~~-~~~~~~~~~~~~~~~~~~~~~w~p 942 (1618)
+++++.+.+.+ +.. | ... +.. ...+....++++|+||+|+.. +. ..+.+.++ ++.|++|||
T Consensus 470 i~~~~~l~~~~~~~~~~~~~l~~~~~d~~~~~~~~g~~~~r~~dvld~WfdS~~~~~~-~~~~p~~~----~~~f~~~~P 544 (821)
T 1ile_A 470 IGSFQELKARATKPLPEPFDPHRPYVDQVELACACGGTMRRVPYVIDVWYDSGAMPFA-SLHYPFEH----EEVFRESFP 544 (821)
T ss_dssp CCSHHHHHHHBSSCCCSSCCCSHHHHTTCEEECTTSSEEEECSCBCCHHHHHHHHHHH-TTTTTTSC----HHHHHHHSS
T ss_pred eCcHHHHHhhccccccchhhhccccccccccCCCCCCchhhcccccceecccccchHh-hcCCCccc----hHHHhhcCC
Confidence 23344443211 000 0 000 000 012334567899999998742 11 11222221 345889999
Q ss_pred cceEeecccccccchhHHHHHHhhccCCCCCCCCccccCCCccchhhhHHHHhhhhhhhhhhcccccccccchhhhhhhh
Q psy5309 943 VDLRCSGKDLIQNHLTFFIYIHTAIWGDEPEMWPRGIRANGHLLLNSAKDLIQNHLTFFIYKLFSDLIQNHLTFFIYIHT 1022 (1618)
Q Consensus 943 ~Dl~v~G~D~~~~Hl~f~lf~h~~lw~~~~~~wp~~lr~~g~~~~~e~~~~i~~~~~~~i~~~~~~~~~~h~~~~i~~~~ 1022 (1618)
+|++++|+||+|+|.... + +.+.
T Consensus 545 ~dl~~~G~D~~r~w~~~~------~---------------------------------------------------~~~~ 567 (821)
T 1ile_A 545 ADFIAEGIDQTRGWFNSL------H---------------------------------------------------QLGV 567 (821)
T ss_dssp BSBEEEEGGGGGTHHHHH------H---------------------------------------------------HHHH
T ss_pred cccccchhhhhccHHHHH------H---------------------------------------------------HHHH
Confidence 999999999999852221 1 1112
Q ss_pred hccCCCCCCcCcEEEEcccee-eCCccceeccCcccChHHHHhhcCccceEEeecccCcccccccccHHHHHH----HHh
Q psy5309 1023 AIWGDEPEMWPRGIRANGHLL-LNSAKMSKSEGNFLTLTEAVKKFSADGMRLCLADSGDSVEDANFVESMADA----GIL 1097 (1618)
Q Consensus 1023 ~~~p~~~~~~pk~v~~hG~vl-~~G~KMSKS~GNvV~p~eii~~yGaDalRl~l~~~~~~~~D~~fs~~~~~~----~~~ 1097 (1618)
++++.. .|+++++||+++ .+|+|||||+||+|+|.+++++||+|++|||+++.+++++|++|+++.+.. .++
T Consensus 568 ~~~~~~---pf~~v~~hg~vl~~~G~KMSKS~GNvV~p~dli~~yGaDalR~~ll~~~~~~~d~~fs~~~l~~~~~~~~~ 644 (821)
T 1ile_A 568 MLFGSI---AFKNVICHGLILDEKGQKMSKSKGNVVDPWDIIRKFGADALRWYIYVSAPPEADRRFGPNLVRETVRDYFL 644 (821)
T ss_dssp HHHSSC---SBSEEEEECCEECTTSSCCCTTTTCCCCHHHHHTTTCHHHHHHHHHHHSCSSSCEECCHHHHHHHHHHTHH
T ss_pred HhcCCC---CcceEEEEeeEECCCCCCCCccCCCCCCHHHHHHHhCHHHHHHHHHhCCCCCCCcEecHHHHHHHHHHHHH
Confidence 222322 279999999999 699999999999999999999999999999999998999999999988654 568
Q ss_pred hHHHHHHHHHHHHHhcccCC-C---CCCCCcchHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHH--HHHHHHHHHh
Q psy5309 1098 RLYTFIEWVKEILATQSTLR-T---GSQDSFNDKVFLSEMNLKIKETEDHYTKMLFKEALRTGFFELQ--AARDKYRELT 1171 (1618)
Q Consensus 1098 kl~N~~~~l~~~l~~~~~~~-~---~~~~~~~D~~~l~~l~~~i~~v~~~~e~~~f~~al~~~~~~l~--~~~n~Yi~~~ 1171 (1618)
+++|+++|+..+.+..+..+ . .......|+|++++++.+++++.++|++|+|++|++. ++++. +.+|+|++..
T Consensus 645 kl~N~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ll~~l~~~~~~v~~a~e~~~f~~A~~~-l~~f~~~~~~n~Yl~~~ 723 (821)
T 1ile_A 645 TLWNVYSFFVTYANLDRPDLKNPPPPEKRPEMDRWLLARMQDLIQRVTEALEAYDPTTSARA-LRDFVVEDLSQWYVRRN 723 (821)
T ss_dssp HHHHHHHHHHHHHHHHCCCTTSCCCSTTSCHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHH-HHHHHHHHSSTTTHHHH
T ss_pred HHHHHHHHHHHhhccccCCcccccccccCCHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHH-HHHHHHHHHHHHHHHHh
Confidence 99999988764332211111 0 1234567999999999999999999999999999998 56666 7899999987
Q ss_pred cc--c-------CcchHHHHHHHHHHHHHhcCcCCCCchhHHHHHhCCCccccccchhh-hhhhcccCCCC
Q psy5309 1172 AA--E-------GGMHRTLVLRFVEVQALLLCPVCPHVAEHVYQLLGKDLIQNHLTFFI-YIHTAIWGDEP 1232 (1618)
Q Consensus 1172 k~--~-------~~~~~~~l~~~l~~l~~lLaP~~P~~aEei~~~Lgkd~~svh~~~f~-s~~~~~~p~~~ 1232 (1618)
++ + ....+.++.++++.+++||+|||||+|||||+.||.... .--. |+|.+.||...
T Consensus 724 k~~~~~~~~~~~r~~~~~~l~~~l~~~~~lLaP~~P~~aeelw~~L~~~~~----~~~~~sv~~~~~P~~~ 790 (821)
T 1ile_A 724 RRRFWKNEDALDREAAYATLYEALVLVATLAAPFTPFLAEVLWQNLVRSVR----LEAKESVHLADWPEAD 790 (821)
T ss_dssp HHHHHTCTTTSSTTHHHHHHHHHHHHHHHHHTTTSTTHHHHHHHHHTTTTS----TTSCSSGGGSCCCCCC
T ss_pred hhhcccCCCcHHHHHHHHHHHHHHHHHHHHcCCccchHHHHHHHhcccccc----CCCCCceEeecCCCCC
Confidence 64 1 123457789999999999999999999999999986310 0012 56777887643
No 6
>4arc_A Leucine--tRNA ligase; ligase-RNA complex, nucleotide-binding, protein biosynthesis I aminoacyl-tRNA synthetase, ATP-binding; 2.00A {Escherichia coli} PDB: 4aq7_A 4ari_A* 4as1_A*
Probab=100.00 E-value=4.5e-95 Score=947.77 Aligned_cols=687 Identities=21% Similarity=0.316 Sum_probs=462.8
Q ss_pred chhhhHHHHHHHHHHhHhCCCccccCCCcCCCCCCCCceeeccccCCCCCcccCcccchhHHhHHHhhhhccccccCCCC
Q psy5309 8 KVEYLQKIEKEVQEEWDREKIYEETVGDAVRSSPDDKFFTTFPFPYMNGRLHLGHTFSLSKFREKIYEETVGDAVRSSPD 87 (1618)
Q Consensus 8 ~~~~~~~~E~~~~~~W~~~~if~~~~~~~~~~~~~~k~~~~~~~py~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (1618)
|+-.+.++|++||++|+++++|++..+. ++
T Consensus 23 ~~y~~~~iE~kw~~~W~~~~~f~~~~~~--------------------------------------------------~~ 52 (880)
T 4arc_A 23 EQYRPEEIESKVQLHWDEKRTFEVTEDE--------------------------------------------------SK 52 (880)
T ss_dssp SSCCHHHHHHHHHHHHHHTTTTCCCCCT--------------------------------------------------TS
T ss_pred ccCChHHHHHHHHHHHHhcCCcccCCcC--------------------------------------------------CC
Confidence 3445689999999999999999876532 36
Q ss_pred CCeEEeCCCCCCCCcchhhhhchhhhhHHHHHHHHHcCCcccccccccCCChhhHHHHHHHHHHHHhcCCCCCCCCCCCC
Q psy5309 88 DKFFTTFPFPYMNGRLHLGHTFSLSKCEFSVRFNRLKGKRVLFPFGFHCTGMPIKACADKLKREMESFGFPPQFPSEDTE 167 (1618)
Q Consensus 88 ~~f~v~~ppP~~nG~LHiGHa~~~~~~D~~aR~~rm~G~~V~~~~G~d~~G~pIe~~a~k~~~~~~~~gi~~~~~e~~~~ 167 (1618)
++|+++.|||||||+|||||+++++++|+++||+||+||+|++++||||||+|||..|.+ .|+.
T Consensus 53 ~~~~v~~~~PypnG~lHiGHa~~~~~~DvlaRy~rm~G~~V~~~~G~D~~Glpie~~a~~-------~g~~--------- 116 (880)
T 4arc_A 53 EKYYCLSMLPYPSGRLHMGHVRNYTIGDVIARYQRMLGKNVLQPIGWDAFGLPAEGAAVK-------NNTA--------- 116 (880)
T ss_dssp CEEEEEECCCCCCSSCCHHHHHHHHHHHHHHHHHHHTTCEEECCCEECCCSTHHHHHHHH-------TTSC---------
T ss_pred CCEEEEcCCCCCCCCcchhhhHHHHHHHHHHHHHHHcCCceEEecCccccCcHHHHHHHH-------cCCC---------
Confidence 789999999999999999999999999999999999999999999999999999988764 1211
Q ss_pred CCCCCCCCCchhcccccCcchHHHHHhhhhHHHHHHHHhcCCCHHHHHHHhhhhhHHhhchhHHHHHHHHcCCcccccCc
Q psy5309 168 PQTDKDDDDPVIKDKSKGKKSKAVAKAGSAKYQWQIMQSLGLEDDEIRKFADASHWLDHFPPLAVQDLRSIGIHVDWRRT 247 (1618)
Q Consensus 168 ~~~~~~~~~~~~~~~~~g~~~~~~ak~~~~~~~~~~~~~~g~~~~e~~~f~~~~~~~~~~~~~~~~~l~~lGi~~Dw~~~ 247 (1618)
+.+|++++++.++++|++||+++||+++
T Consensus 117 ----------------------------------------------------p~~~~~~~i~~~~~~l~~LGis~Dw~~~ 144 (880)
T 4arc_A 117 ----------------------------------------------------PAPWTYDNIAYMKNQLKMLGFGYDWSRE 144 (880)
T ss_dssp ----------------------------------------------------HHHHHHHHHHHHHHHHHHTTCCCCGGGC
T ss_pred ----------------------------------------------------HHHHHHHHHHHHHHHHHHhCCCcCCCCC
Confidence 3456777788999999999999999999
Q ss_pred eeecCCChhhhHHHHHHHHHHHhcCccccCceeEEEecCCCCcccchhhccCC------CCCCeeEEEEEEeeccCCccc
Q psy5309 248 FITTDSNPFFDSFVRWQFMRLRDRHKIKYGKRYTVFSPRDNQPCMDHDRASGE------GVGPQEYTLIKMRLVKPYPAK 321 (1618)
Q Consensus 248 ~~T~d~~p~y~~~v~~~f~~L~~kG~iy~g~~~v~w~p~~~t~lsd~Ev~~~~------~~~~~~y~~~~~~~~~~~~~~ 321 (1618)
|.|++ |.|.+.++|+|.+|+++|+||++.++|+|||.|+|+|||+|+..+. .+...+...+.|++.. |...
T Consensus 145 ~~T~d--~~~~~~v~~~f~~L~ekGliY~~~~~v~wcp~~~t~La~~ev~~g~~~~~g~~ve~~~~~~~f~~i~~-y~~~ 221 (880)
T 4arc_A 145 LATCT--PEYYRWEQKFFTELYKKGLVYKKTSAVNWCPNDQTVLANEQVIDGCCWRCDTKVERKEIPQWFIKITA-YADE 221 (880)
T ss_dssp EETTS--HHHHHHHHHHHHHHHHTTCEEEEEECC------------------------------CEEEEEECGGG-GHHH
T ss_pred EEcCC--HHHHHHHHHHHHHHHHCCCEEEeceeEeecCCcCCEecchhhhcCcCcCCCCccEEEEccceEEeech-hHHH
Confidence 99999 8899999999999999999999999999999999999999886531 1111112233343321 1000
Q ss_pred c----c---------------------------cCCCCCcEEEEeecCccccccCceEEeCCCCCceeecccCCccEEEE
Q psy5309 322 L----C---------------------------CLDSKPVFLVAATLRPETMYGQTNAWVRPDMAYIALSCLDSKPVFLV 370 (1618)
Q Consensus 322 ~----~---------------------------~~~~~~~~l~i~TTrPeTl~g~~avaV~P~~~Y~~~~~~~~~~~~iv 370 (1618)
+ . .+.+++.+|+|||||||||+|++||||||++.|+......+.. +
T Consensus 222 Ll~~l~~~~~wp~~v~~~~~~wig~s~g~~v~f~~~~~~~~i~v~TTrP~Tl~g~t~vav~Pe~~~~~~~~~~~~~---~ 298 (880)
T 4arc_A 222 LLNDLDKLDHWPDTVKTMQRNWIGRSEGVEITFNVNDYDNTLTVYTTRPDTFMGCTYLAVAAGHPLAQKAAENNPE---L 298 (880)
T ss_dssp HHHHGGGCTTSCHHHHHHHHHHHCEEEEEEEEEEETTCSSEEEEEESCGGGGGGCCEEEECTTCHHHHHHGGGCHH---H
T ss_pred HHHHHhhcccccHHHHHHHHhhhccccceEEEEEecCCCceEEEEeCCchhhcCCeEEEECCCcHHHHHHhcChHH---H
Confidence 0 0 0123457899999999999999999999999877642201100 0
Q ss_pred ecccccCccCCCeeEEecCCCCeeEEEcCCCcEEEeccccccccccCCCchhhhHHHHhhhhccCcceecCCEEEecccc
Q psy5309 371 AATLRPETMYGQTNAWVRPDMAYIAFTTATGEVFVCTERSARNMAYQGFTEVEGKINVLLRLTGQVCIRSGDECVVALCD 450 (1618)
Q Consensus 371 ~~~~~~~t~~Gt~~v~v~P~~~y~~~~~~~~~~~i~~~~~~~~~~~~g~~~~~a~~~ii~~l~~~~l~r~g~~i~~~l~~ 450 (1618)
.+.+ .+ ....+. ....+...+..+.. .|..+..+++
T Consensus 299 ~~~~-~~------------------------------------~~~~~~-----~~~~~~~~~~~g~~-~g~~~~~P~~- 334 (880)
T 4arc_A 299 AAFI-DE------------------------------------CRNTKV-----AEAEMATMEKKGVD-TGFKAVHPLT- 334 (880)
T ss_dssp HHHH-TC---------------------------------------------------------CEEE-EEEEEECTTT-
T ss_pred HHHH-HH------------------------------------HhccCc-----hhhhhccceeeccc-cCcEEecCCC-
Confidence 0000 00 000000 00000001111111 2334443333
Q ss_pred ceeeccCCchHHHHHHHHhccccccchhhhhhHhhhhhccccceeeccccCCccCCCCCcchhhccCCCcccceEEEeec
Q psy5309 451 QWYLDYGEPTWKAAAEQCLANMNTYHDEVRRNFGASLNWLHEYACSRTYGLGTKLPWDEQWLIESLSDSTIYMAYYTVAH 530 (1618)
Q Consensus 451 QWfl~~~~~~~k~~~~~~~~~~~~~p~~~~~~~~~~~~~l~dWciSRq~~WG~~iP~~~~w~i~~~~~~~i~~a~~~~~~ 530 (1618)
|..|| ++.+
T Consensus 335 ---------------------------------------------------~~~ip--------------------i~~~ 343 (880)
T 4arc_A 335 ---------------------------------------------------GEEIP--------------------VWAA 343 (880)
T ss_dssp ---------------------------------------------------CCEEE--------------------EEEE
T ss_pred ---------------------------------------------------CCEeE--------------------EEEe
Confidence 33456 4443
Q ss_pred cccCcccccCCCCcccccccCCCcceeeeeeccCCCCCCCCCCChhhHHHHHhhhccccccceeccccccCCCCchhhhH
Q psy5309 531 LLQGGTFRGENGNALNIKAEDLTPEVWDYVFFKSAPFPPKCRVPKAKLDIMRREFQYWYPVDLRCSGKVSTKLPWDEQWL 610 (1618)
Q Consensus 531 ~~~~~~~~g~~~~~~~v~~~~gtg~v~~~~~~~~~~~~~~~~~p~~~~~~~~~~f~~wyp~D~~~~~~~~~~~~~~~~~~ 610 (1618)
++|+++.|||.| |+ +|+|+ +.||.++.+ |
T Consensus 344 --------------~yV~~~~GTGaV------~~--------~Pahd------------~~D~~~~~~----------~- 372 (880)
T 4arc_A 344 --------------NFVLMEYGTGAV------MA--------VPGHD------------QRDYEFASK----------Y- 372 (880)
T ss_dssp --------------TTSCSSSTTSEE------EE--------CTTTC------------HHHHHHHHH----------H-
T ss_pred --------------CccccCCCCceE------EE--------ccCCC------------HHHHHHHHH----------c-
Confidence 789999999999 99 99999 999987765 6
Q ss_pred hhhccchhhhhhhhhhhhhccCCccccCCCCcccccceeeeeccCCCCccccccCCCCCchHHHHHHHhccCCcccHHHH
Q psy5309 611 IESLSDSTIYMAYYTVAHLLQGGTFRGENGNALNINCVIVFQVLPYDPVPIIQVPEYGNLCAVTVYEKLKIQSQNDKDKL 690 (1618)
Q Consensus 611 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~~~~~~~~~~~~~~~~~d~~~~ 690 (1618)
|++ .+++|+..+ |.-. ...
T Consensus 373 -----------------------------~Lp---------------i~~vi~~~~-~~~~-----------~~~----- 391 (880)
T 4arc_A 373 -----------------------------GLN---------------IKPVILAAD-GSEP-----------DLS----- 391 (880)
T ss_dssp -----------------------------TCC---------------CCCCBCCTT-SCCC-----------CCS-----
T ss_pred -----------------------------CCC---------------ceEeeccCc-cccc-----------ccc-----
Confidence 332 123332110 0000 000
Q ss_pred HHHHHHHHhhcccceeee-ecccCCcchHHHHHHHHHHHHHhCCcccCCCcccceeeecccccccccCCCCceEeeeCCC
Q psy5309 691 QEAKELVYLKGFYDGIML-VGEFKGKKVQEVKKLLQKKIDIIGVALKAPVTSHSVIYTLPMLSIREDKGTGIVTSVPSDS 769 (1618)
Q Consensus 691 ~~~~~~~~~~~~~~G~~~-~~~~~G~~v~~a~~~i~~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~v~~r~ 769 (1618)
+.+|. .+|++. .|+|.|+++++||++|+++|++.|+..+
T Consensus 392 ----~~~~~---~~g~~~ns~~~~Gl~~~eA~~~ii~~L~~~g~~~~--------------------------------- 431 (880)
T 4arc_A 392 ----QQALT---EKGVLFNSGEFNGLDHEAAFNAIADKLTAMGVGER--------------------------------- 431 (880)
T ss_dssp ----SSCCC---SCCCBCSSGGGTTCCHHHHHHHHHHHHHHTTSEEE---------------------------------
T ss_pred ----ccccc---CCceeecCcccCCCCHHHHHHHHHHHHHHcCCcce---------------------------------
Confidence 00111 157765 7899999999999999999999995200
Q ss_pred chhhHHhhhhcCCCCCcccccccCCeEEEeccCcceeecCCchHHHHHHHHHhcccccChHHHHHHHHhhcCcCceeecc
Q psy5309 770 PDDYAALVDLKKKPPFREKYHVTDEMCVVALCDQWYLDYGEPTWKAAAEQCLANMNTYHDEVRRNFGASLNWLHEYACSR 849 (1618)
Q Consensus 770 g~d~~~~~~l~~~~~~~~~~~H~y~~c~~~~~~QWfi~~~~~~~k~~~~~~i~~v~~~P~~~k~~~~~~l~~l~DW~ISR 849 (1618)
+ +++ +++||||||
T Consensus 432 ------------------------~-----------v~y--------------------------------rlrDW~iSR 444 (880)
T 4arc_A 432 ------------------------K-----------VNY--------------------------------RLRDWGVSR 444 (880)
T ss_dssp ------------------------E-----------EEE--------------------------------SCCCEECEE
T ss_pred ------------------------e-----------EEE--------------------------------Ecccceeee
Confidence 0 111 479999999
Q ss_pred cCCCCcccCCCccccccccCCcceEeehhHHHHHhhcC-ccCCCCCccC-----------CCCcCCCCCcceeEEecccC
Q psy5309 850 TYGLGTKLPWDEQWLIESLSDSTIYMAYYTVAHLLQGG-TFRGENGNAL-----------NIKAEDLTPEVWDYVFFKAA 917 (1618)
Q Consensus 850 qr~WG~PIP~d~~w~~e~~~D~~iy~~~~ti~~~l~~~-~~~g~~~~~l-----------~~~~~~l~~~~~d~~f~~~~ 917 (1618)
|||||+|||+ |+|++|+ .+.+....+...+... ...|. ++++ +..+....+|++|.||+|+-
T Consensus 445 QRyWG~PIPi---~~c~~cg--~v~v~~~~Lpv~lp~~~~~~~~-g~pl~~~~~w~~~~cpg~~~~retDtmDtw~dSsw 518 (880)
T 4arc_A 445 QRYWGAPIPM---VTLEDGT--VMPTPDDQLPVILPEDVVMDGI-TSPIKADPEWAKTTVNGMPALRETDTFDTFMESSW 518 (880)
T ss_dssp SCSSSCBCCE---EEETTSC--EEECCGGGCSCCCCSSCCCCSS-SCHHHHSTTTTEEESSSSEEEECCCEECTTTGGGT
T ss_pred eeccCCcceE---EEECCCC--eEeCChHHCccccchhcccCCC-CCchHhCccceeeccCCCcceeCCCcCCCcccCcH
Confidence 9999999999 9999764 2333222111111100 01110 1111 12234566788999988752
Q ss_pred CCCCCCCCChh---hHHHHHHhhccccccceEeecccccccchhHHHHHHhhccCCCCCCCCccccCCCccchhhhHHHH
Q psy5309 918 PFPPKCRVPKA---KLDIMRREFQYWYPVDLRCSGKDLIQNHLTFFIYIHTAIWGDEPEMWPRGIRANGHLLLNSAKDLI 994 (1618)
Q Consensus 918 ~~~~~~~~~~~---~~~~~~~~~~~w~p~Dl~v~G~D~~~~Hl~f~lf~h~~lw~~~~~~wp~~lr~~g~~~~~e~~~~i 994 (1618)
.+..++ .+.. .+ .++.+++|||+|+|++|.||+..|+.|+||+|++|. +.|++.
T Consensus 519 y~~r~~-~p~~~~~~~--~~~~~~~~~PvD~yigG~EHailHllyaRf~~~~L~------------~~g~~~-------- 575 (880)
T 4arc_A 519 YYARYT-CPQYKEGML--DSEAANYWLPVDIYIGGIEHAIMHLLYFRFFHKLMR------------DAGMVN-------- 575 (880)
T ss_dssp HHHHTT-STTCCSSSC--CHHHHHHHCSEEEEECCGGGTTTHHHHHHHHHHHHH------------HTTSCC--------
T ss_pred HHHhhc-CCCcccccc--ChHHHhccCCceEeecchhhHHHHHHHHHHHHHHHH------------Hhhccc--------
Confidence 111000 1110 01 135678999999999999999999999999999983 223210
Q ss_pred hhhhhhhhhhcccccccccchhhhhhhhhccCCCCCCcCcEEEEcccee--------eCCc-------------------
Q psy5309 995 QNHLTFFIYKLFSDLIQNHLTFFIYIHTAIWGDEPEMWPRGIRANGHLL--------LNSA------------------- 1047 (1618)
Q Consensus 995 ~~~~~~~i~~~~~~~~~~h~~~~i~~~~~~~p~~~~~~pk~v~~hG~vl--------~~G~------------------- 1047 (1618)
...| ++++++||||+ .+|+
T Consensus 576 -------------------------------~~eP---Fk~ll~qGmVl~~~~~~~d~~G~~~~~~~~~v~~~~~~~~~~ 621 (880)
T 4arc_A 576 -------------------------------SDEP---AKQLLCQGMVLADAFYYVGENGERNWVSPVDAIVERDEKGRI 621 (880)
T ss_dssp -------------------------------CSCS---EEEEECCCCEEEEEEEEECTTSCEEEECSTTCEEEECTTCCE
T ss_pred -------------------------------CCCC---hHHeEEeceEeecceeccccCCcccccCHHHhcccccccccc
Confidence 1123 69999999995 3455
Q ss_pred -----------------cceeccCcccChHHHHhhcCccceEEeecccCcccccccccHHHHHH---HHhhHHHHHHHHH
Q psy5309 1048 -----------------KMSKSEGNFLTLTEAVKKFSADGMRLCLADSGDSVEDANFVESMADA---GILRLYTFIEWVK 1107 (1618)
Q Consensus 1048 -----------------KMSKS~GNvV~p~eii~~yGaDalRl~l~~~~~~~~D~~fs~~~~~~---~~~kl~N~~~~l~ 1107 (1618)
|||||+||+|+|.+++++||||++|||+++.+++++|++|+++.++. ++++++|+++++.
T Consensus 622 ~~~~~~~G~~v~~~~~eKMSKSkGNvVdP~diIekYGADalRl~ll~~~~~~~dl~~s~~~ie~a~rfl~rlwn~~~~~~ 701 (880)
T 4arc_A 622 VKAKDAAGHELVYTGMSKMSKSKNNGIDPQVMVERYGADTVRLFMMFASPADMTLEWQESGVEGANRFLKRVWKLVYEHT 701 (880)
T ss_dssp EEEECTTCCBCEEEEEEECCTTTTCCCCHHHHHHHHCHHHHHHHHHHSSCTTSCEECCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccccCCccccccccccccCcCCCCCCHHHHHHHcCchHHHHHHHhcCCCCCCcccCHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999998765 4456666555443
Q ss_pred HHHHhccc-CCCCCCCCcchHHHHHHHHHHHHHHHHHHh-hccHHHHHHHHHHHHHHHHHHHHHHhcccCcchHHHHHHH
Q psy5309 1108 EILATQST-LRTGSQDSFNDKVFLSEMNLKIKETEDHYT-KMLFKEALRTGFFELQAARDKYRELTAAEGGMHRTLVLRF 1185 (1618)
Q Consensus 1108 ~~l~~~~~-~~~~~~~~~~D~~~l~~l~~~i~~v~~~~e-~~~f~~al~~~~~~l~~~~n~Yi~~~k~~~~~~~~~l~~~ 1185 (1618)
.. ... ..........|+|++++++.++++++++|+ +|+|+.|++. ++++++.++.|. ........++.++
T Consensus 702 ~~---~~~~~~~~~~l~~~D~~ll~~l~~~i~~V~~a~ed~~~fntAi~~-l~efvn~l~k~~----~~~~~~~~~l~~~ 773 (880)
T 4arc_A 702 AK---GDVAALNVDALTENQKALRRDVHKTIAKVTDDIGRRQTFNTAIAA-IMELMNKLAKAP----TDGEQDRALMQEA 773 (880)
T ss_dssp HT---CCCCCCCSTTCCHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHH-HHHHHHHHHTSC----CSSHHHHHHHHHH
T ss_pred hc---ccccccccccCCHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHH-HHHHHHHHHhhh----ccchHHHHHHHHH
Confidence 21 110 011123467899999999999999999998 8999999998 788888777652 1122345678999
Q ss_pred HHHHHHhcCcCCCCchhHHHHHhCCCccccccchhhhhhhcccCCCC
Q psy5309 1186 VEVQALLLCPVCPHVAEHVYQLLGKDLIQNHLTFFIYIHTAIWGDEP 1232 (1618)
Q Consensus 1186 l~~l~~lLaP~~P~~aEei~~~Lgkd~~svh~~~f~s~~~~~~p~~~ 1232 (1618)
++.+++||+|||||+|||||+.||.+ .|++.+.||..+
T Consensus 774 l~~ll~LLaPf~PhiaEElW~~Lg~~---------~sv~~~~wP~~d 811 (880)
T 4arc_A 774 LLAVVRMLNPFTPHICFTLWQELKGE---------GDIDNAPWPVAD 811 (880)
T ss_dssp HHHHHHHHTTTSHHHHHHHHHHTTCS---------SCGGGSCCCCCC
T ss_pred HHHHHHHHhhccHHHHHHHHHHcCCC---------CeEEeCCCCCCC
Confidence 99999999999999999999999864 256777887644
No 7
>2v0c_A Aminoacyl-tRNA synthetase; ligase, nucleotide-binding, protein biosynthesis; HET: LMS ANZ; 1.85A {Thermus thermophilus} PDB: 1h3n_A* 1obc_A* 1obh_A* 2bte_A* 2byt_A 2v0g_A*
Probab=100.00 E-value=1.2e-93 Score=943.87 Aligned_cols=688 Identities=21% Similarity=0.297 Sum_probs=481.0
Q ss_pred hhhHHHHHHHHHHhHhCCCccccCCCcCCCCCCCCceeeccccCCCCCcccCcccchhHHhHHHhhhhccccccCCCCCC
Q psy5309 10 EYLQKIEKEVQEEWDREKIYEETVGDAVRSSPDDKFFTTFPFPYMNGRLHLGHTFSLSKFREKIYEETVGDAVRSSPDDK 89 (1618)
Q Consensus 10 ~~~~~~E~~~~~~W~~~~if~~~~~~~~~~~~~~k~~~~~~~py~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (1618)
-++.++|++||++|+++++|++.... .++++
T Consensus 4 y~~~~iE~kw~~~W~~~~~f~~~~~~-------------------------------------------------~~~~k 34 (878)
T 2v0c_A 4 YNPHAIEAKWQRFWEEKGFMKAKDLP-------------------------------------------------GGRGK 34 (878)
T ss_dssp CCCTTHHHHHHHHHHHHTTTCCCSCC-------------------------------------------------C---E
T ss_pred CCHHHHHHHHHHHHHHcCCcccCccc-------------------------------------------------CCCCC
Confidence 46789999999999999999887611 13578
Q ss_pred eEEeCCCCCCCCcchhhhhchhhhhHHHHHHHHHcCCcccccccccCCChhhHHHHHHHHHHHHhcCCCCCCCCCCCCCC
Q psy5309 90 FFTTFPFPYMNGRLHLGHTFSLSKCEFSVRFNRLKGKRVLFPFGFHCTGMPIKACADKLKREMESFGFPPQFPSEDTEPQ 169 (1618)
Q Consensus 90 f~v~~ppP~~nG~LHiGHa~~~~~~D~~aR~~rm~G~~V~~~~G~d~~G~pIe~~a~k~~~~~~~~gi~~~~~e~~~~~~ 169 (1618)
|++++|||||||.|||||+++++++|+++||+||+||+|++++||||||+|||..|++ .|+.
T Consensus 35 ~~v~~~~Py~nG~lHiGHa~~~~~~Dvl~Ry~rm~G~~V~~~~G~D~~Glpie~~a~k-------~g~~----------- 96 (878)
T 2v0c_A 35 QYVLVMFPYPSGDLHMGHLKNYTMGDVLARFRRMQGYEVLHPMGWDAFGLPAENAALK-------FGVH----------- 96 (878)
T ss_dssp EEEEECCCCCSSCCBHHHHHHHHHHHHHHHHHHHHTCEEECCCCBCCSSHHHHHHHHH-------TTCC-----------
T ss_pred EEEECCCCCCCCCcchhhhHHHHHHHHHHHHHHhcCCceEeecccCcccHHHHHHHHH-------cCCC-----------
Confidence 9999999999999999999999999999999999999999999999999999988764 1211
Q ss_pred CCCCCCCchhcccccCcchHHHHHhhhhHHHHHHHHhcCCCHHHHHHHhhhhhHHhhchhHHHHHHHHcCCcccccCcee
Q psy5309 170 TDKDDDDPVIKDKSKGKKSKAVAKAGSAKYQWQIMQSLGLEDDEIRKFADASHWLDHFPPLAVQDLRSIGIHVDWRRTFI 249 (1618)
Q Consensus 170 ~~~~~~~~~~~~~~~g~~~~~~ak~~~~~~~~~~~~~~g~~~~e~~~f~~~~~~~~~~~~~~~~~l~~lGi~~Dw~~~~~ 249 (1618)
+.+|++++++.++++|++||+++||+++|.
T Consensus 97 --------------------------------------------------~~~~~~~~~~~~~~~~~~LGi~~Dw~~~~~ 126 (878)
T 2v0c_A 97 --------------------------------------------------PKDWTYANIRQAKESLRLMGILYDWDREVT 126 (878)
T ss_dssp --------------------------------------------------HHHHHHHHHHHHHHHHHHTTCCCCGGGCCB
T ss_pred --------------------------------------------------HHHHHHHHHHHHHHHHHHhCCccCcCCCee
Confidence 346778888999999999999999999999
Q ss_pred ecCCChhhhHHHHHHHHHHHhcCccccCceeEEEecCCCCcccchhhccCCC-C-CCeeE-----EEEEEeeccCCcccc
Q psy5309 250 TTDSNPFFDSFVRWQFMRLRDRHKIKYGKRYTVFSPRDNQPCMDHDRASGEG-V-GPQEY-----TLIKMRLVKPYPAKL 322 (1618)
Q Consensus 250 T~d~~p~y~~~v~~~f~~L~~kG~iy~g~~~v~w~p~~~t~lsd~Ev~~~~~-~-~~~~y-----~~~~~~~~~~~~~~~ 322 (1618)
|++ |.|.+.++|+|.+|+++|+||++.++|+|||.|+|+|||+||+++.. . +.+.+ ..+.|++.. |...+
T Consensus 127 T~d--~~~~~~v~~~f~~L~~kGliY~~~~~v~w~p~~~t~La~~ev~~g~~~~~~~~~~~~~~~~~~f~~l~~-~~~~L 203 (878)
T 2v0c_A 127 TCE--PEYYRWNQWIFLKMWEKGLAYRAKGLVNWCPKCQTVLANEQVVEGRCWRHEDTPVEKRELEQWYLRITA-YAERL 203 (878)
T ss_dssp TTS--HHHHHHHHHHHHHHHHTTCEEEEEEEEEEETTTTEEECGGGEETTEESSCTTCBCEEEEEEEEEECGGG-GHHHH
T ss_pred cCC--HHHHHHHHHHHHHHHHCCCEEEcceeEEEeCCCCCCcCHHHHhcCCCcccCCCceEEEecceeeEecch-hHHHH
Confidence 999 88999999999999999999999999999999999999999986531 1 22221 223344321 11000
Q ss_pred -c-----------------------------cCCCCCcEEEEeecCccccccCceEEeCCCCCceeecccCCccEEEEec
Q psy5309 323 -C-----------------------------CLDSKPVFLVAATLRPETMYGQTNAWVRPDMAYIALSCLDSKPVFLVAA 372 (1618)
Q Consensus 323 -~-----------------------------~~~~~~~~l~i~TTrPeTl~g~~avaV~P~~~Y~~~~~~~~~~~~iv~~ 372 (1618)
. .+.+.+.+|+|||||||||||++||||||++.|+.... .++....+ .
T Consensus 204 ~~~l~~~~~p~~~~~~~~~wi~~s~g~~v~f~~~~~~~~l~v~TTrP~Tl~g~~~vav~pe~~~~~~~~-~~~~~~~~-~ 281 (878)
T 2v0c_A 204 LKDLEGLNWPEKVKAMQRAWIGRSEGAEILFPVEGKEVRIPVFTTRPDTLFGATFLVLAPEHPLTLELA-APEKREEV-L 281 (878)
T ss_dssp HHTTTTCBSCHHHHHHHHHHHCEEEEEEEEEEBTTSSCEEEEEESCGGGGGGCCEEEECTTSHHHHHHS-CGGGHHHH-H
T ss_pred HHHhhhcCCCHHHHHHHHHHhccccCceEEEEecCCCceEEEEeCCchhhhCcEEEEEcCCCeeeehhc-cchhHHHH-H
Confidence 0 01234579999999999999999999999998776421 11000000 0
Q ss_pred ccccCccCCCeeEEecCCCCeeEEEcCCCcEEEeccccccccccCCCchhhhHHHH-hhhhccCcceecCCEEEeccccc
Q psy5309 373 TLRPETMYGQTNAWVRPDMAYIAFTTATGEVFVCTERSARNMAYQGFTEVEGKINV-LLRLTGQVCIRSGDECVVALCDQ 451 (1618)
Q Consensus 373 ~~~~~t~~Gt~~v~v~P~~~y~~~~~~~~~~~i~~~~~~~~~~~~g~~~~~a~~~i-i~~l~~~~l~r~g~~i~~~l~~Q 451 (1618)
.+.. ... .....+ + .+ ..+++|. + .|..+..+++
T Consensus 282 ~~~~------------------------------------~~~--~~~~~~-~-~~~~~~~~G~-~--~g~~~~~P~~-- 316 (878)
T 2v0c_A 282 AYVE------------------------------------AAK--RKTEIE-R-QAEGREKTGV-F--LGAYALNPAT-- 316 (878)
T ss_dssp HHHH------------------------------------HHH--TSCHHH-H-HCSSSCCCCE-E--EEEEEECTTT--
T ss_pred HHHH------------------------------------HHh--hhhhhh-h-hhccceeeeE-e--cCcEEECCCC--
Confidence 0000 000 000000 0 00 0111111 1 1222222222
Q ss_pred eeeccCCchHHHHHHHHhccccccchhhhhhHhhhhhccccceeeccccCCccCCCCCcchhhccCCCcccceEEEeecc
Q psy5309 452 WYLDYGEPTWKAAAEQCLANMNTYHDEVRRNFGASLNWLHEYACSRTYGLGTKLPWDEQWLIESLSDSTIYMAYYTVAHL 531 (1618)
Q Consensus 452 Wfl~~~~~~~k~~~~~~~~~~~~~p~~~~~~~~~~~~~l~dWciSRq~~WG~~iP~~~~w~i~~~~~~~i~~a~~~~~~~ 531 (1618)
|..+| ++++
T Consensus 317 --------------------------------------------------~~~ip--------------------i~~~- 325 (878)
T 2v0c_A 317 --------------------------------------------------GERIP--------------------IWTA- 325 (878)
T ss_dssp --------------------------------------------------CCEEE--------------------EEEC-
T ss_pred --------------------------------------------------CCEeE--------------------EEEe-
Confidence 22345 4443
Q ss_pred ccCcccccCCCCcccccccCCCcceeeeeeccCCCCCCCCCCChhhHHHHHhhhccccccceeccccccCCCCchhhhHh
Q psy5309 532 LQGGTFRGENGNALNIKAEDLTPEVWDYVFFKSAPFPPKCRVPKAKLDIMRREFQYWYPVDLRCSGKVSTKLPWDEQWLI 611 (1618)
Q Consensus 532 ~~~~~~~g~~~~~~~v~~~~gtg~v~~~~~~~~~~~~~~~~~p~~~~~~~~~~f~~wyp~D~~~~~~~~~~~~~~~~~~~ 611 (1618)
++|+++.|||+| |+ +|+|+ +.||.++.+ |
T Consensus 326 -------------~~V~~~~GTG~V------~~--------~PaHd------------~~D~~~~~k----------~-- 354 (878)
T 2v0c_A 326 -------------DYVLFGYGTGAI------MA--------VPAHD------------QRDYEFARK----------F-- 354 (878)
T ss_dssp -------------TTSCTTSTTSEE------EE--------CTTTC------------HHHHHHHHH----------H--
T ss_pred -------------CcccCCCCCceE------Ee--------CCCCC------------HHHHHHHHH----------c--
Confidence 789999999999 99 99999 999987765 6
Q ss_pred hhccchhhhhhhhhhhhhccCCccccCCCCcccccceeeeeccCCCCccccccCCCCCchHHHHHHHhccCCcccHHHHH
Q psy5309 612 ESLSDSTIYMAYYTVAHLLQGGTFRGENGNALNINCVIVFQVLPYDPVPIIQVPEYGNLCAVTVYEKLKIQSQNDKDKLQ 691 (1618)
Q Consensus 612 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~~~~~~~~~~~~~~~~~d~~~~~ 691 (1618)
|++ .+++|+.++ ++. .+| +
T Consensus 355 ----------------------------~L~---------------i~~vi~~~~-~~~-------------~~~---~- 373 (878)
T 2v0c_A 355 ----------------------------GLP---------------IKKVIERPG-EPL-------------PEP---L- 373 (878)
T ss_dssp ----------------------------TCC---------------CCCCEECSS-SCC-------------CSS---C-
T ss_pred ----------------------------CCC---------------ceeeeCCCC-ccc-------------ccc---c-
Confidence 332 233443222 000 000 0
Q ss_pred HHHHHHHhhcccceeee-ecccCCcchHHHHHHHHHHHHHhCCcccCCCcccceeeecccccccccCCCCceEeeeCCCc
Q psy5309 692 EAKELVYLKGFYDGIML-VGEFKGKKVQEVKKLLQKKIDIIGVALKAPVTSHSVIYTLPMLSIREDKGTGIVTSVPSDSP 770 (1618)
Q Consensus 692 ~~~~~~~~~~~~~G~~~-~~~~~G~~v~~a~~~i~~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~v~~r~g 770 (1618)
+..|. .+|+|. .|+|.|+++++|+++|+++|++.|+.. .
T Consensus 374 ---~~~~~---~~g~~~ns~~~~Gl~~~eA~~~Ii~~L~~~g~~~----------------~------------------ 413 (878)
T 2v0c_A 374 ---ERAYE---EPGIMVNSGPFDGTESEEGKRKVIAWLEEKGLGK----------------G------------------ 413 (878)
T ss_dssp ---SSCCC---SCCEECSSGGGTTCBHHHHHHHHHHHHHHHTSEE----------------E------------------
T ss_pred ---ccccc---CCeeEecCCCCCCcCHHHHHHHHHHHHHHCCCCC----------------C------------------
Confidence 00121 167775 789999999999999999999999410 0
Q ss_pred hhhHHhhhhcCCCCCcccccccCCeEEEeccCcceeecCCchHHHHHHHHHhcccccChHHHHHHHHhhcCcCceeeccc
Q psy5309 771 DDYAALVDLKKKPPFREKYHVTDEMCVVALCDQWYLDYGEPTWKAAAEQCLANMNTYHDEVRRNFGASLNWLHEYACSRT 850 (1618)
Q Consensus 771 ~d~~~~~~l~~~~~~~~~~~H~y~~c~~~~~~QWfi~~~~~~~k~~~~~~i~~v~~~P~~~k~~~~~~l~~l~DW~ISRq 850 (1618)
+ +++ +++|||||||
T Consensus 414 -----------------------~-----------v~~--------------------------------rlrDW~ISRQ 427 (878)
T 2v0c_A 414 -----------------------R-----------VTY--------------------------------RLRDWLISRQ 427 (878)
T ss_dssp -----------------------E-----------EEE--------------------------------SCCCEECEES
T ss_pred -----------------------c-----------eEE--------------------------------ecccchhhcc
Confidence 0 011 5889999999
Q ss_pred CCCCcccCCCccccccccCC-----cceEeehhHHHHHhhcCccCCCCCccC-------------CCCcCCCCCcceeEE
Q psy5309 851 YGLGTKLPWDEQWLIESLSD-----STIYMAYYTVAHLLQGGTFRGENGNAL-------------NIKAEDLTPEVWDYV 912 (1618)
Q Consensus 851 r~WG~PIP~d~~w~~e~~~D-----~~iy~~~~ti~~~l~~~~~~g~~~~~l-------------~~~~~~l~~~~~d~~ 912 (1618)
|+||+|||+ |+|++|.. ..+.+....+..+.. ..|...+++ ...+....+|++|.|
T Consensus 428 R~WG~PIPi---~~~~~~~~v~v~~~~lpv~lp~~~~~~~---~~~~g~~pl~~~~~~~~~~cp~cg~~~~retDtmDtw 501 (878)
T 2v0c_A 428 RYWGTPIPM---VHCEACGVVPVPEEELPVLLPDLKDVED---IRPKGKSPLEAHPEFYETTCPKCGGPAKRDTDTMDTF 501 (878)
T ss_dssp CSSSEECCE---EEETTTEEEECCGGGCCCCCCCCCCHHH---HSCSSSCGGGGCHHHHEEECTTTCSEEEECCCEECHH
T ss_pred cccCCcccE---EEECCCCeEecCHHHccccccchhhhhc---cccCCCChhhhhHhhcCCcCCCCCCcceecccccccc
Confidence 999999999 99986521 111111111111110 011111111 012345678999999
Q ss_pred ecccCCCCCCCCCChhh-HHHHHHhhccccccceEeecccccccchhHHHHHHhhccCCCCCCCCccccCCCccchhhhH
Q psy5309 913 FFKAAPFPPKCRVPKAK-LDIMRREFQYWYPVDLRCSGKDLIQNHLTFFIYIHTAIWGDEPEMWPRGIRANGHLLLNSAK 991 (1618)
Q Consensus 913 f~~~~~~~~~~~~~~~~-~~~~~~~~~~w~p~Dl~v~G~D~~~~Hl~f~lf~h~~lw~~~~~~wp~~lr~~g~~~~~e~~ 991 (1618)
|+|+=.+..++ .+..+ .--.++.+++|||+|+|++|+||+++|+.|++|||++|. +.|++
T Consensus 502 fdSsw~~~~~~-~p~~~~~~~~~~~~~~~~P~D~yi~G~d~~ilhl~y~r~~~~~l~------------~~g~~------ 562 (878)
T 2v0c_A 502 FDSSWYYLRYT-DPHNDRLPFDPEKANAWMPVDQYIGGVEHAVLHLLYSRFFTKFLH------------DLGMV------ 562 (878)
T ss_dssp HHHTSHHHHTT-STTCSSSSCCHHHHHHHCSBSEEECCGGGTTTHHHHHHHHHHHHH------------HTTSC------
T ss_pred ccccchhhhcc-CccccccccCHHHHccCCCCeEEEechHHHHHHHHHHHHHHHHHH------------Hhhcc------
Confidence 99841100000 01100 000145689999999999999999999999999999873 11210
Q ss_pred HHHhhhhhhhhhhcccccccccchhhhhhhhhccCCCCCCcCcEEEEccceee---------------------------
Q psy5309 992 DLIQNHLTFFIYKLFSDLIQNHLTFFIYIHTAIWGDEPEMWPRGIRANGHLLL--------------------------- 1044 (1618)
Q Consensus 992 ~~i~~~~~~~i~~~~~~~~~~h~~~~i~~~~~~~p~~~~~~pk~v~~hG~vl~--------------------------- 1044 (1618)
..+.| ++++++||||+-
T Consensus 563 ---------------------------------~~~~P---fk~l~~~G~vl~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 606 (878)
T 2v0c_A 563 ---------------------------------KVEEP---FQGLFTQGMVLAWTDFGPVEVEGSVVRLPEPTRIRLEIP 606 (878)
T ss_dssp ---------------------------------SCSCS---BSBEECCCCEEEEEEEEEEEEETTEEECCHHHHHHHTCS
T ss_pred ---------------------------------cCCCc---hHhheecceEeccceeccccccccceecccccccccccc
Confidence 12223 699999999983
Q ss_pred --------------------CC-------ccceeccCcccChHHHHhhcCccceEEeecccCcccccccccHHHHHH---
Q psy5309 1045 --------------------NS-------AKMSKSEGNFLTLTEAVKKFSADGMRLCLADSGDSVEDANFVESMADA--- 1094 (1618)
Q Consensus 1045 --------------------~G-------~KMSKS~GNvV~p~eii~~yGaDalRl~l~~~~~~~~D~~fs~~~~~~--- 1094 (1618)
+| +|||||+||+|+|.+++++||||++|||+++.+++++|++|+++.++.
T Consensus 607 ~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~KMSKSkGNvVdP~diI~~yGADalRl~ll~~~~~~~D~~fs~~~v~~~~~ 686 (878)
T 2v0c_A 607 ESALSLEDVRKMGAELRPHEDGTLHLWKPAVMSKSKGNGVMVGPFVKEQGADIARITILFAAPPENEMVWTEEGVQGAWR 686 (878)
T ss_dssp CSEEEHHHHHHTTCEEEECTTSSEEEEEEEECSGGGTCCCBHHHHHHHSCHHHHHHHHHHHSCTTSCEEECHHHHHHHHH
T ss_pred CchhhhhccccccceeeccCCCCchhhhHHHhhccCCCcccHHHHHHHcCccHHHHHHhccCCCCCCceeCHHHHHHHHH
Confidence 89 899999999999999999999999999999988999999999998654
Q ss_pred HHhhHHHHHHHHHHHHHhc-ccCCCCCCCCcchHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHhcc
Q psy5309 1095 GILRLYTFIEWVKEILATQ-STLRTGSQDSFNDKVFLSEMNLKIKETEDHYTKMLFKEALRTGFFELQAARDKYRELTAA 1173 (1618)
Q Consensus 1095 ~~~kl~N~~~~l~~~l~~~-~~~~~~~~~~~~D~~~l~~l~~~i~~v~~~~e~~~f~~al~~~~~~l~~~~n~Yi~~~k~ 1173 (1618)
++++++|++++........ ... ....+...|+|++++++.++++++++|++|+|++|++. ++++.+.++.|.+..
T Consensus 687 ~l~Rl~n~~~~~~~~~~~~~~~~-~~~~l~~~D~~ll~~l~~~i~~v~~~~e~~~f~~Ai~~-l~~f~~~l~k~~~~~-- 762 (878)
T 2v0c_A 687 FLNRIYRRVAEDREALLETSGVF-QAEALEGKDRELYGKLHETLKKVTEDLEALRFNTAIAA-LMEFLNALYEYRKDR-- 762 (878)
T ss_dssp HHHHHHHHHHHHHHHHHTCCCCC-CGGGCCHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHH-HHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHHhccccccccc-CcccCCHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHH-HHHHHHHHhhhcccc--
Confidence 4567777665544432111 111 11234678999999999999999999999999999998 688888889987641
Q ss_pred cCcchHHHHHHHHHHHHHhcCcCCCCchhHHHHHhCCCccccccchhhhhhhcccCCC
Q psy5309 1174 EGGMHRTLVLRFVEVQALLLCPVCPHVAEHVYQLLGKDLIQNHLTFFIYIHTAIWGDE 1231 (1618)
Q Consensus 1174 ~~~~~~~~l~~~l~~l~~lLaP~~P~~aEei~~~Lgkd~~svh~~~f~s~~~~~~p~~ 1231 (1618)
. ...++.++++.+++||+|||||+|||+|+.|| + .|+|.+.||..
T Consensus 763 --~-~~~~l~~~l~~l~~LLaPf~P~~aEElw~~Lg-~---------~sv~~~~wP~~ 807 (878)
T 2v0c_A 763 --P-VTPVYRTAIRYYLQMLFPFAPHLAEELWHWFW-P---------DSLFEAGWPEL 807 (878)
T ss_dssp --C-SCHHHHHHHHHHHHHHTTTSHHHHHHHHHHHC-S---------SCGGGSCCCCC
T ss_pred --h-hHHHHHHHHHHHHHHHcccchHHHHHHHHHcC-C---------CceeecCCCCC
Confidence 1 12678999999999999999999999999998 2 24667777753
No 8
>1rqg_A Methionyl-tRNA synthetase; translation, dimerization, ligase; 2.90A {Pyrococcus abyssi} SCOP: a.27.1.1 c.26.1.1 g.41.1.1
Probab=100.00 E-value=1.7e-68 Score=694.60 Aligned_cols=319 Identities=20% Similarity=0.252 Sum_probs=248.1
Q ss_pred EEEeccCcceeecCCchHHHHHHHHHhcccccChHHHHHHHHhh-cCcCceeecccCCCCcccCCCccccccccCCcceE
Q psy5309 796 CVVALCDQWYLDYGEPTWKAAAEQCLANMNTYHDEVRRNFGASL-NWLHEYACSRTYGLGTKLPWDEQWLIESLSDSTIY 874 (1618)
Q Consensus 796 c~~~~~~QWfi~~~~~~~k~~~~~~i~~v~~~P~~~k~~~~~~l-~~l~DW~ISRqr~WG~PIP~d~~w~~e~~~D~~iy 874 (1618)
+..+.++|||+++ +++++++++.+++.. +|++.++++.+|| ++++|||||||++||+|||+ |.+ ...++++|
T Consensus 180 v~~~~~~qwF~~l--~~~~~~l~~~~~~~~-wp~~~~~~~~~wl~~gl~dw~ISR~~~WG~piP~---~~~-g~~~~~iy 252 (722)
T 1rqg_A 180 ISFRDSAHYYIKM--QDFAERLKRWIEKQP-WKPNVKNMVLSWIEEGLEERAITRDLNWGIPVPL---DEE-DMKGKVLY 252 (722)
T ss_dssp CEEEEEEEEEECG--GGTHHHHHHHHHSSC-CCHHHHHHHHHHHTTCCCCEECEECCSSSCBCSC---CCS-SSTTCEEC
T ss_pred eEEEEeccEEEEh--HHHHHHHHHHHHhCC-CCHHHHHHHHHHHHCCCcccceeccccCccccCc---ccc-CCCCCEEE
Confidence 3444689999999 799999999999888 4999999999999 89999999999999999998 542 22467999
Q ss_pred eehhHHHHHhhcCccCCCCCccCCCCcCCCCCcceeEEecccCCCCCCCCCChhhHHHHHHhhcccccc---c---eEee
Q psy5309 875 MAYYTVAHLLQGGTFRGENGNALNIKAEDLTPEVWDYVFFKAAPFPPKCRVPKAKLDIMRREFQYWYPV---D---LRCS 948 (1618)
Q Consensus 875 ~~~~ti~~~l~~~~~~g~~~~~l~~~~~~l~~~~~d~~f~~~~~~~~~~~~~~~~~~~~~~~~~~w~p~---D---l~v~ 948 (1618)
||+++..+++... +. + . . ..+ ..+.|+.||++ | ++++
T Consensus 253 vW~da~i~y~~~~---~~-----------~--------~-~------~~g--------~~~~~~~~w~~pd~~~~~~h~~ 295 (722)
T 1rqg_A 253 VWFEAPIGYISIT---IE-----------H--------F-K------RIG--------KPNEWKKYWLNIDGQTRVIHFI 295 (722)
T ss_dssp HHHHGGGHHHHHH---HH-----------H--------H-H------HTT--------CTTTTHHHHBCSSCCEEEEEEE
T ss_pred EEeccccchhhhH---HH-----------H--------H-h------hcC--------CchHHHhccCCCCCCCeeEEEc
Confidence 9999887776410 00 0 0 0 000 01235656652 2 7899
Q ss_pred cccccccchhHHHHHHhhccCCCCCCCCccccCCCc-cchhhhHHHHhhhhhhhhhhcccccccccchhhhhhhhhccCC
Q psy5309 949 GKDLIQNHLTFFIYIHTAIWGDEPEMWPRGIRANGH-LLLNSAKDLIQNHLTFFIYKLFSDLIQNHLTFFIYIHTAIWGD 1027 (1618)
Q Consensus 949 G~D~~~~Hl~f~lf~h~~lw~~~~~~wp~~lr~~g~-~~~~e~~~~i~~~~~~~i~~~~~~~~~~h~~~~i~~~~~~~p~ 1027 (1618)
|+|++++|..| ||+.|...|. +.. +.+ .
T Consensus 296 GkDii~fH~~~---------------wpA~l~~~~~~l~~-------------d~~----------------------r- 324 (722)
T 1rqg_A 296 GKDNIPFHAIF---------------WPAFLMAYGKYKDE-------------EVE----------------------A- 324 (722)
T ss_dssp EGGGHHHHHTH---------------HHHHHHTTCCBCSS-------------SCC----------------------B-
T ss_pred cccccccchhh---------------hHHHHhccCCCccc-------------ccc----------------------c-
Confidence 99998887554 3433211110 000 000 0
Q ss_pred CCCCcCcEEEEccceeeCCccceeccCcccChHHHHhhcCccceEEeecccCcccccccccHHHHHH-----HHhhHHHH
Q psy5309 1028 EPEMWPRGIRANGHLLLNSAKMSKSEGNFLTLTEAVKKFSADGMRLCLADSGDSVEDANFVESMADA-----GILRLYTF 1102 (1618)
Q Consensus 1028 ~~~~~pk~v~~hG~vl~~G~KMSKS~GNvV~p~eii~~yGaDalRl~l~~~~~~~~D~~fs~~~~~~-----~~~kl~N~ 1102 (1618)
+.++|++|++||||+.+|+|||||+||+|+|.+++++||+|++|||+++.+++++|++|+++.+.. .+++++|+
T Consensus 325 -g~~~Pk~v~~hG~v~~~G~KMSKS~GNvV~p~d~i~~ygaDalR~~ll~~~~~~~D~~fs~~~~~~~~n~~l~~~l~N~ 403 (722)
T 1rqg_A 325 -EWNLPYDIPANEYLTLEGKKFSTSRNWAIWVHEFLDVFPADYLRYYLTTIMPETRDSDFSFSDFKVRINEELVNNLGNF 403 (722)
T ss_dssp -CBCCCSBCCEECCEEETTEECBTTTTBSCBHHHHTTTSCHHHHHHHHHHTCCSSSCEEECHHHHHHHHHHTTTTTHHHH
T ss_pred -CCCCCCEEEEeeeEEeCCeeeeeeCCCcCCHHHHHHhcCchHHHHHHHhcCCCCCCCccCHHHHHHHHHHHHHHHHHHH
Confidence 134689999999999999999999999999999999999999999999998999999999998654 45689999
Q ss_pred HHHHHHHHHhc--ccCCCCCCCCcchHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHhcccC----c
Q psy5309 1103 IEWVKEILATQ--STLRTGSQDSFNDKVFLSEMNLKIKETEDHYTKMLFKEALRTGFFELQAARDKYRELTAAEG----G 1176 (1618)
Q Consensus 1103 ~~~l~~~l~~~--~~~~~~~~~~~~D~~~l~~l~~~i~~v~~~~e~~~f~~al~~~~~~l~~~~n~Yi~~~k~~~----~ 1176 (1618)
++|+.+++.+. +..+........|+|++++++.+++++.++|++|+|++|++. ++++.+.+|+|++..+|+. .
T Consensus 404 ~~R~~~~~~k~~~~~~~~~~~~~~~d~~ll~~l~~~~~~v~~~~e~~~f~~A~~~-i~~~~~~~n~Yi~~~kpw~~~k~~ 482 (722)
T 1rqg_A 404 VHRALTFVNRYFDGVVPERGELDELDREALEEIEKAFKEVGELIMNYRFKDALKR-VMSLASFGNRYFDHKQPWKTAKED 482 (722)
T ss_dssp HHHHHHHHHHHSTTBCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHH-HHHHHHHHHHHHHTTCHHHHTTTC
T ss_pred HHHHHHHHHHhcCCCCCCcccCCHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHH-HHHHHHHHHHHHHhcCchhhcCCC
Confidence 99999888653 222222234567999999999999999999999999999999 6888999999999988742 1
Q ss_pred -----chHHHHHHHHHHHHHhcCcCCCCchhHHHHHhCCC
Q psy5309 1177 -----MHRTLVLRFVEVQALLLCPVCPHVAEHVYQLLGKD 1211 (1618)
Q Consensus 1177 -----~~~~~l~~~l~~l~~lLaP~~P~~aEei~~~Lgkd 1211 (1618)
....+++++++.+++||+|||||+||+||+.||.+
T Consensus 483 ~~~~~~vl~~l~~~l~~l~~lL~P~~P~~aeei~~~L~~~ 522 (722)
T 1rqg_A 483 KVRTGTTVNISLQIVKALGILLEPFLPDASEKIWHLLNLD 522 (722)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHcCCC
Confidence 12234678999999999999999999999999865
No 9
>3u1f_A Methionyl-tRNA synthetase; aminoacyl-tRNA synthetase, AARS, metrs, parasite, protein-IN complex, rossmann-fold, translation; HET: 392; 2.20A {Trypanosoma brucei} PDB: 3u1e_A* 3u1g_A* 3u20_A* 4eg1_A 4eg3_A* 4eg6_A* 4eg8_A* 4eg5_A* 3tun_A* 3u1z_A* 4eg4_A* 4eg7_A* 4ega_A*
Probab=100.00 E-value=4e-68 Score=678.02 Aligned_cols=286 Identities=19% Similarity=0.234 Sum_probs=220.4
Q ss_pred cccChHHHHHHHHhhc-CcCceeecccCC----CCcccCCCccccccccCCcceEeehhHHHHHhhcCccCCCCCccCCC
Q psy5309 825 NTYHDEVRRNFGASLN-WLHEYACSRTYG----LGTKLPWDEQWLIESLSDSTIYMAYYTVAHLLQGGTFRGENGNALNI 899 (1618)
Q Consensus 825 ~~~P~~~k~~~~~~l~-~l~DW~ISRqr~----WG~PIP~d~~w~~e~~~D~~iy~~~~ti~~~l~~~~~~g~~~~~l~~ 899 (1618)
.++|++.++.+.+|++ +++||||||||+ ||+|||.++ ++.+|+|+++...++... +..
T Consensus 195 ~~~P~~~~~~~~~~~~~~l~Dw~ISRq~~~~~~WGipiP~~~--------~~~~~vw~da~~~~~~~~---~~~------ 257 (542)
T 3u1f_A 195 CIVPEFRRREVIRAVEKGLPDLSVSRARATLHNWAIPVPGNP--------DHXVYVWLDALTNYLTGS---RLR------ 257 (542)
T ss_dssp SEESHHHHHHHHHHHHHCCCCEECEEEGGGGTTCSCEETTEE--------EEEECHHHHHHTHHHHHH---TEE------
T ss_pred ccCCchhhHhHhhhhhccccccCccccccCcCCCCCccCCCc--------Ceeeeeeeccchhhhhhh---hcc------
Confidence 3568999999999995 699999999998 999999843 368999999988887521 000
Q ss_pred CcCCCCCcceeEEecccCCCCCCCCCChhhHHHHHHhhccccccceEeecccccccchhHHHHHHhhccCCCCCCCCccc
Q psy5309 900 KAEDLTPEVWDYVFFKAAPFPPKCRVPKAKLDIMRREFQYWYPVDLRCSGKDLIQNHLTFFIYIHTAIWGDEPEMWPRGI 979 (1618)
Q Consensus 900 ~~~~l~~~~~d~~f~~~~~~~~~~~~~~~~~~~~~~~~~~w~p~Dl~v~G~D~~~~Hl~f~lf~h~~lw~~~~~~wp~~l 979 (1618)
......+.++... .. ....||+|++++|+|++++|..+ | |+.+
T Consensus 258 ----~~~~g~~~~~~d~-----------------~~-~~~~~p~d~~~~G~D~~~fh~~~--------~-------~a~l 300 (542)
T 3u1f_A 258 ----VDESGKEVSLVDD-----------------FN-ELERFPADVHVIGKDILKFHAIY--------W-------PAFL 300 (542)
T ss_dssp ----ECTTSCEEEECSS-----------------GG-GTTCCSCSEEEEEGGGHHHHHTH--------H-------HHHH
T ss_pred ----ccccCCcccccch-----------------hh-hhcCCcceEEEecccccccccch--------h-------HHHH
Confidence 0001111111110 00 11247999999999998776544 3 2110
Q ss_pred cCCCccchhhhHHHHhhhhhhhhhhcccccccccchhhhhhhhhccCCCCCCcCcEEEEccceeeCCccceeccCcccCh
Q psy5309 980 RANGHLLLNSAKDLIQNHLTFFIYKLFSDLIQNHLTFFIYIHTAIWGDEPEMWPRGIRANGHLLLNSAKMSKSEGNFLTL 1059 (1618)
Q Consensus 980 r~~g~~~~~e~~~~i~~~~~~~i~~~~~~~~~~h~~~~i~~~~~~~p~~~~~~pk~v~~hG~vl~~G~KMSKS~GNvV~p 1059 (1618)
+. . ..++|+.+++|||+..+|+|||||+||+|+|
T Consensus 301 -----------------------~~------------------~-----g~~~~~~v~~hg~l~~~G~KMSKSlGNvi~p 334 (542)
T 3u1f_A 301 -----------------------LS------------------A-----GLPLPKKIVAHGWWTKDRKKISKSLGNVFDP 334 (542)
T ss_dssp -----------------------HH------------------H-----TCCCCSCEEEECCCEETTBCCBTTTTBCCCH
T ss_pred -----------------------Hh------------------h-----cccccceeccccceecCCceeccccCCCCCh
Confidence 00 0 1346899999999999999999999999999
Q ss_pred HHHHhhcCccceEEeecccCcccccccccHHHHHH-----HHhhHHHHHHHHHHHHHhc-ccCCCCCCCCcchHHHHHHH
Q psy5309 1060 TEAVKKFSADGMRLCLADSGDSVEDANFVESMADA-----GILRLYTFIEWVKEILATQ-STLRTGSQDSFNDKVFLSEM 1133 (1618)
Q Consensus 1060 ~eii~~yGaDalRl~l~~~~~~~~D~~fs~~~~~~-----~~~kl~N~~~~l~~~l~~~-~~~~~~~~~~~~D~~~l~~l 1133 (1618)
.+++++||+|++||||++.+++++|++|+++.+.. ..++|+|+++|+....... +..+........|+|+++++
T Consensus 335 ~~~i~~ygaD~lR~~l~~~~~~~~d~~fs~~~~~~~~n~~l~n~l~N~~~r~~~~~~~~~~~~~~~~~~~~~d~~il~~l 414 (542)
T 3u1f_A 335 VEKAEEFGYDALKYFLLRESGFSDDGDYSDKNMIARLNGELADTLGNLVMRCTSAKINVNGEWPSPAAYTEEDESLIQLI 414 (542)
T ss_dssp HHHHHHHCHHHHHHHHHHHCCTTSCCEECHHHHHHHHHHTTTTTHHHHHHHHHCTTTSTTSBCCCCCCCCHHHHHHHHHH
T ss_pred hHHHhhcCchHHHHHHHhcCcccccccccHHHHHHHhhhHHHHHHHHHHHHHHHhhhcccCCCCccchhhHHHHHHHHHh
Confidence 99999999999999999988999999999988754 3468999999887654332 23333445677899999999
Q ss_pred HHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHhcccC----c-----chHHHHHHHHHHHHHhcCcCCCCchhHH
Q psy5309 1134 NLKIKETEDHYTKMLFKEALRTGFFELQAARDKYRELTAAEG----G-----MHRTLVLRFVEVQALLLCPVCPHVAEHV 1204 (1618)
Q Consensus 1134 ~~~i~~v~~~~e~~~f~~al~~~~~~l~~~~n~Yi~~~k~~~----~-----~~~~~l~~~l~~l~~lLaP~~P~~aEei 1204 (1618)
+.+++++.++|++|+|++|++. ++++++.+|+|++..+|+. . ....+++++++.+++||+|||||+||+|
T Consensus 415 ~~~~~~~~~~~~~~~~~~a~~~-i~~~~~~~n~Y~~~~~pw~l~k~d~~~~~~~l~~~~~~l~~~~~ll~P~~P~~aeei 493 (542)
T 3u1f_A 415 KDLPGTADHYYLIPDIQKAIIA-VFDVLRAINAYVTDMAPWKLVKTDPERLRTVLYITLEGVRVTTLLLSPILPRKSVVI 493 (542)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHH-HHHHHHHHHHHHHHHCHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHTTTSHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHhcCchhhhcCCHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHH
Confidence 9999999999999999999998 6888999999999888731 1 1234567888999999999999999999
Q ss_pred HHHhCCC
Q psy5309 1205 YQLLGKD 1211 (1618)
Q Consensus 1205 ~~~Lgkd 1211 (1618)
|+.||.+
T Consensus 494 ~~~Lg~~ 500 (542)
T 3u1f_A 494 FDMLGVP 500 (542)
T ss_dssp HHHHTCC
T ss_pred HHHCCCC
Confidence 9999865
No 10
>2x1l_A Methionyl-tRNA synthetase; nucleotide-binding, protein biosynthesis, ligase, aminoacyl- synthetase; HET: ADN CXS; 2.30A {Mycobacterium smegmatis} PDB: 2x1m_A*
Probab=100.00 E-value=1.8e-62 Score=622.62 Aligned_cols=276 Identities=24% Similarity=0.354 Sum_probs=218.6
Q ss_pred ccChHHHHHHHHhh-cCcCceeecccCC-CCcccCCCccccccccCCcceEeehhHHHHHhhcCccCCCCCccCCCCcCC
Q psy5309 826 TYHDEVRRNFGASL-NWLHEYACSRTYG-LGTKLPWDEQWLIESLSDSTIYMAYYTVAHLLQGGTFRGENGNALNIKAED 903 (1618)
Q Consensus 826 ~~P~~~k~~~~~~l-~~l~DW~ISRqr~-WG~PIP~d~~w~~e~~~D~~iy~~~~ti~~~l~~~~~~g~~~~~l~~~~~~ 903 (1618)
+.|+..++++.+|+ ++++||||||||. ||+|||.++ ++++|+|+++...++...
T Consensus 195 i~p~~~~~~~~~~~~~~l~Dw~iSRqr~~WG~~iP~~~--------~~~~yvWfds~~~~~~~~---------------- 250 (524)
T 2x1l_A 195 IGPDARRNEIVSFVSGGLKDLSISRTTFDWGVPVPDHP--------DHVMYVWVDALTNYLTGV---------------- 250 (524)
T ss_dssp EESHHHHHHHHHHHTTCCCCEECEESSCCSSCEETTEE--------EEEECHHHHHHTHHHHTT----------------
T ss_pred eCCHHHHHHHHHHHHcCCcccceECCCCCcCccCCCCC--------CCEEEEecCCchHHHHHc----------------
Confidence 45778888888998 5899999999985 999999632 368999999887777520
Q ss_pred CCCcceeEEecccCCCCCCCCCChhhHHHHHHhhccccccceEeecccccccchhHHHHHHhhccCCCCCCCCccccCCC
Q psy5309 904 LTPEVWDYVFFKAAPFPPKCRVPKAKLDIMRREFQYWYPVDLRCSGKDLIQNHLTFFIYIHTAIWGDEPEMWPRGIRANG 983 (1618)
Q Consensus 904 l~~~~~d~~f~~~~~~~~~~~~~~~~~~~~~~~~~~w~p~Dl~v~G~D~~~~Hl~f~lf~h~~lw~~~~~~wp~~lr~~g 983 (1618)
.++ .+ ..+.++.|||+|++++|+||+++|..| | |+.+
T Consensus 251 --------------g~p------~~----~~~~~~~~~p~di~~~G~D~~~fh~~~--------~-------~a~l---- 287 (524)
T 2x1l_A 251 --------------GFP------DT----ESESFRRYWPADLHMIGKDIIRFHTVY--------W-------PAFL---- 287 (524)
T ss_dssp --------------TTT------CT----TSHHHHHHCSCSEEEEEGGGHHHHHTH--------H-------HHHH----
T ss_pred --------------CCC------CC----chHHHHhhCCCeEEEEeechhHhHHHH--------H-------HHHH----
Confidence 011 10 013467889999999999998776544 3 1100
Q ss_pred ccchhhhHHHHhhhhhhhhhhcccccccccchhhhhhhhhccCCCCCCcCcEEEEccceeeCCccceeccCcccChHHHH
Q psy5309 984 HLLLNSAKDLIQNHLTFFIYKLFSDLIQNHLTFFIYIHTAIWGDEPEMWPRGIRANGHLLLNSAKMSKSEGNFLTLTEAV 1063 (1618)
Q Consensus 984 ~~~~~e~~~~i~~~~~~~i~~~~~~~~~~h~~~~i~~~~~~~p~~~~~~pk~v~~hG~vl~~G~KMSKS~GNvV~p~eii 1063 (1618)
..+ + .++|+++++||||+.+|+|||||+||+|+|.+++
T Consensus 288 -------------------------------------~~~--g---~~~~~~v~~hG~v~~~G~KMSKS~GN~v~p~d~i 325 (524)
T 2x1l_A 288 -------------------------------------MSA--G---LPLPKRIFAHGWLLNRGEKMSKSIGNVVDPVNLV 325 (524)
T ss_dssp -------------------------------------HHH--T---CCCCSCEEEECCEEECSCSEETTTEESSCHHHHH
T ss_pred -------------------------------------HHC--C---CCCCcEEEECcEEEeCCcccCCcCCCCCCHHHHH
Confidence 000 1 2358999999999999999999999999999999
Q ss_pred hhcCccceEEeecccCcccccccccHHHHHHHH-----hhHHHHHHHHHHHHHhc--ccCCCCCCCCcchHHHHHHHHHH
Q psy5309 1064 KKFSADGMRLCLADSGDSVEDANFVESMADAGI-----LRLYTFIEWVKEILATQ--STLRTGSQDSFNDKVFLSEMNLK 1136 (1618)
Q Consensus 1064 ~~yGaDalRl~l~~~~~~~~D~~fs~~~~~~~~-----~kl~N~~~~l~~~l~~~--~~~~~~~~~~~~D~~~l~~l~~~ 1136 (1618)
++||+|++|||+++.+++++|++|+++.+.+.. ++++|+.+|+..++.+. +..+........|++++++++.+
T Consensus 326 ~~~g~DalR~~ll~~~~~~~d~~fs~~~l~~~~~~~l~n~l~n~~~r~~~~~~~~~~~~~~~~~~~~~~d~~l~~~l~~~ 405 (524)
T 2x1l_A 326 DTFGLDQVRYFLLREVPFGQDGSYNEDAIIGRVNADLANELGNLAQRSLSMVAKNLGAAVPDPGEFTDEDTALLAAADAL 405 (524)
T ss_dssp HHHCHHHHHHHHHHHSCTTSCEEECHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHSTTBCCCCCCCCHHHHHHHHHHHTH
T ss_pred HHcChHHHHHHHHhcCCCCCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCccccchhHHHHHHHHHHH
Confidence 999999999999987799999999999876654 35889998888776542 12221223456799999999999
Q ss_pred HHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHhccc---Cc-------c---hHHHHHHHHHHHHHhcCcCCCCchhH
Q psy5309 1137 IKETEDHYTKMLFKEALRTGFFELQAARDKYRELTAAE---GG-------M---HRTLVLRFVEVQALLLCPVCPHVAEH 1203 (1618)
Q Consensus 1137 i~~v~~~~e~~~f~~al~~~~~~l~~~~n~Yi~~~k~~---~~-------~---~~~~l~~~l~~l~~lLaP~~P~~aEe 1203 (1618)
++++.++|++|+|+.|++. ++++.+.+|+|++.++|+ .. . ...++.++++.+++||+|||||+||+
T Consensus 406 ~~~v~~a~~~~~~~~a~~~-l~~l~~~~n~y~~~~k~w~l~~~~~~~~~~~~~~~l~~l~~~l~~~~~ll~P~~P~~aee 484 (524)
T 2x1l_A 406 LERVREHFDVPAMHLALEA-IWSVLGAANRYFSAQEPWVLRKSDAAEDQQRFRTVLYTTLEVVRIASLLLQPVMPESTAK 484 (524)
T ss_dssp HHHHHHHHHTTCHHHHHHH-HHHHHHHHHHHHHHHCHHHHTTCCSHHHHHHHHHHHHHHHHHHHHHHHHTTTTCHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHH-HHHHHHHHHHHHHhcCChhhhcCccccCHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHH
Confidence 9999999999999999998 689999999999988873 11 1 12356788999999999999999999
Q ss_pred HHHHhCCC
Q psy5309 1204 VYQLLGKD 1211 (1618)
Q Consensus 1204 i~~~Lgkd 1211 (1618)
||+.||.+
T Consensus 485 i~~~L~~~ 492 (524)
T 2x1l_A 485 LLDLLGQP 492 (524)
T ss_dssp HHHHTTCC
T ss_pred HHHHcCCC
Confidence 99999865
No 11
>4dlp_A Aminoacyl-tRNA synthetase, class I:aminoacyl-tRNA synthetase, class IA:methionyl-tRNA...; structural genomics; 2.65A {Brucella melitensis biovar abortus 230ORGANISM_TAXID}
Probab=100.00 E-value=9.4e-62 Score=616.45 Aligned_cols=275 Identities=20% Similarity=0.282 Sum_probs=211.3
Q ss_pred ccChHHHHHHHHhhc-CcCceeecccC-CCCcccCCCccccccccCCcceEeehhHHHHHhhcCccCCCCCccCCCCcCC
Q psy5309 826 TYHDEVRRNFGASLN-WLHEYACSRTY-GLGTKLPWDEQWLIESLSDSTIYMAYYTVAHLLQGGTFRGENGNALNIKAED 903 (1618)
Q Consensus 826 ~~P~~~k~~~~~~l~-~l~DW~ISRqr-~WG~PIP~d~~w~~e~~~D~~iy~~~~ti~~~l~~~~~~g~~~~~l~~~~~~ 903 (1618)
+.|+..++++.+||+ +++|||||||| +||+|||.|+ ++++|+|+++...|+...
T Consensus 207 i~P~~~~~~~~~~l~~~l~D~~ISR~~~~WGipiP~~~--------~~v~yvWfda~~~y~s~~---------------- 262 (536)
T 4dlp_A 207 IMPAERRNEIVSFVKSGLKDLSISRTTFDWGIPVPGDE--------KHVMYVWVDALTNYITAL---------------- 262 (536)
T ss_dssp EESHHHHHHHHHHHHTCCCCEECEEC--CCSCBCTTCT--------TSEECHHHHHHHHHHHTT----------------
T ss_pred cCcHHHHHHHHHHHhcCCCccCCccCCCcCCeeCCCCC--------CCceEEeeCCcHHHHHhc----------------
Confidence 357888889999996 89999999985 6999999853 478999999999998520
Q ss_pred CCCcceeEEecccCCCCCCCCCChhhHHHHHHhhccccccceEeecccccccchhHHHHHHhhccCCCCCCCCccccCCC
Q psy5309 904 LTPEVWDYVFFKAAPFPPKCRVPKAKLDIMRREFQYWYPVDLRCSGKDLIQNHLTFFIYIHTAIWGDEPEMWPRGIRANG 983 (1618)
Q Consensus 904 l~~~~~d~~f~~~~~~~~~~~~~~~~~~~~~~~~~~w~p~Dl~v~G~D~~~~Hl~f~lf~h~~lw~~~~~~wp~~lr~~g 983 (1618)
.++ .. ...++.|||+|++++|+||+++|..| | |+.+
T Consensus 263 --------------~~~------~~-----~~~~~~~~p~dv~~~G~D~~~fh~~~--------~-------~a~l---- 298 (536)
T 4dlp_A 263 --------------GYP------DT-----TDERWAYWPANAHIIGKDISRFHAVY--------W-------PAFL---- 298 (536)
T ss_dssp --------------TTT------CT-----TSGGGGGCSCSEEEEEGGGHHHHHTH--------H-------HHHH----
T ss_pred --------------CCC------CC-----chHHHhhCCcceEEeechHHHHHHHH--------H-------HHHH----
Confidence 011 00 12478899999999999999998766 2 2110
Q ss_pred ccchhhhHHHHhhhhhhhhhhcccccccccchhhhhhhhhccCCCCCCcCcEEEEccceeeCCccceeccCcccChHHHH
Q psy5309 984 HLLLNSAKDLIQNHLTFFIYKLFSDLIQNHLTFFIYIHTAIWGDEPEMWPRGIRANGHLLLNSAKMSKSEGNFLTLTEAV 1063 (1618)
Q Consensus 984 ~~~~~e~~~~i~~~~~~~i~~~~~~~~~~h~~~~i~~~~~~~p~~~~~~pk~v~~hG~vl~~G~KMSKS~GNvV~p~eii 1063 (1618)
+ .+ ..++|+.|++||||+.+|+|||||+||+|+|.+++
T Consensus 299 -------------------~------------------a~-----g~~~~~~v~~hg~v~~~G~KMSKS~GNvi~p~d~i 336 (536)
T 4dlp_A 299 -------------------M------------------SA-----QLPLPKRVFAHGFLFNRGEKMSKSVGNVIDPFELV 336 (536)
T ss_dssp -------------------H------------------HT-----TCCCCSCEEEECCEEC------------CCHHHHH
T ss_pred -------------------H------------------HC-----CCCCCcEEEeeeeEeeCCceecccCCCCCCHHHHH
Confidence 0 00 12358999999999999999999999999999999
Q ss_pred hhcCccceEEeecccCcccccccccHHHHHHH-----HhhHHHHHHHHHHHHHhc--ccCCCCCCCCcchHHHHHHHHHH
Q psy5309 1064 KKFSADGMRLCLADSGDSVEDANFVESMADAG-----ILRLYTFIEWVKEILATQ--STLRTGSQDSFNDKVFLSEMNLK 1136 (1618)
Q Consensus 1064 ~~yGaDalRl~l~~~~~~~~D~~fs~~~~~~~-----~~kl~N~~~~l~~~l~~~--~~~~~~~~~~~~D~~~l~~l~~~ 1136 (1618)
++||+|++|||+++.++.++|++|+++.+.+. .++++|+.+|+.+++.+. +..+........|+|++++++.+
T Consensus 337 ~~~GaDalR~~ll~~~~~~~d~~fs~~~~~~~~n~~l~~~l~N~~~R~~~~~~~~~~~~~p~~~~~~~~d~~ll~~l~~~ 416 (536)
T 4dlp_A 337 ERYGLDQLRYFLMREVPFGQDGSYSHEAIVNRTNADLANDLGNLAQRSLSMIAKNCEGKVPQPGAFSEADKAILDQADAA 416 (536)
T ss_dssp HHHCHHHHHHHHHHHSCTTSCEECCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHSTTBCCCCCCCCHHHHHHHHHHHHH
T ss_pred HHcCcHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCcccCCHHHHHHHHHHHHH
Confidence 99999999999998779999999999887543 368999999988887653 22232334567899999999999
Q ss_pred HHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHhcccC----c-----chHHHHHHHHHHHHHhcCcCCCCchhHHHHH
Q psy5309 1137 IKETEDHYTKMLFKEALRTGFFELQAARDKYRELTAAEG----G-----MHRTLVLRFVEVQALLLCPVCPHVAEHVYQL 1207 (1618)
Q Consensus 1137 i~~v~~~~e~~~f~~al~~~~~~l~~~~n~Yi~~~k~~~----~-----~~~~~l~~~l~~l~~lLaP~~P~~aEei~~~ 1207 (1618)
++++.++|++|+|++|++. ++++.+.+|+|++..+|+. . ....++.++++.+++||+|||||+||+||+.
T Consensus 417 ~~~v~~a~~~~~~~~a~~~-l~~l~~~~n~Y~~~~k~w~l~~~~~~~~~~~~~~l~~~l~~~~~lL~P~~P~~aeei~~~ 495 (536)
T 4dlp_A 417 LETARKAMDDQALHLALGA-IFAVVAEANRYFAGQEPWALRKTDPARMGTVLYVTAEVLRRVGIMVQPFIPQSAEKLLDI 495 (536)
T ss_dssp HHHHHHHHHTTCHHHHHHH-HHHHHHHHHHHHHHHCHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHTTTSHHHHHHHHHT
T ss_pred HHHHHHHHHccCHHHHHHH-HHHHHHHHHHHHHhCCchhhcCCCHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHH
Confidence 9999999999999999998 6888999999999988621 1 2234577889999999999999999999999
Q ss_pred hCCC
Q psy5309 1208 LGKD 1211 (1618)
Q Consensus 1208 Lgkd 1211 (1618)
||.+
T Consensus 496 L~~~ 499 (536)
T 4dlp_A 496 LAVP 499 (536)
T ss_dssp TTCC
T ss_pred cCCC
Confidence 9865
No 12
>3h99_A Methionyl-tRNA synthetase; rossmann fold, aminoacyl-tRNA synthetase, ATP-binding, ligas binding, nucleotide-binding, protein biosynthesis; HET: CIT; 1.40A {Escherichia coli} PDB: 3h97_A* 3h9b_A* 1f4l_A 3h9c_A* 1pfv_A* 1pfu_A 1p7p_A* 1pfw_A* 1pfy_A* 1pg0_A* 1pg2_A* 1qqt_A 1mea_A 1med_A
Probab=100.00 E-value=1.2e-61 Score=618.52 Aligned_cols=303 Identities=17% Similarity=0.234 Sum_probs=242.9
Q ss_pred EEeccCcceeecCCchHHHHHHHHHhcccccChHHHHHHHHhhc-CcCceeecccC-CCCcccCCCccccccccCCcceE
Q psy5309 797 VVALCDQWYLDYGEPTWKAAAEQCLANMNTYHDEVRRNFGASLN-WLHEYACSRTY-GLGTKLPWDEQWLIESLSDSTIY 874 (1618)
Q Consensus 797 ~~~~~~QWfi~~~~~~~k~~~~~~i~~v~~~P~~~k~~~~~~l~-~l~DW~ISRqr-~WG~PIP~d~~w~~e~~~D~~iy 874 (1618)
..+.++|||+++ +++++.+++.+++ .++|+..++.+.+|++ +++|||||||+ +||+|||.|+ ++++|
T Consensus 196 ~~~~~~~~f~~l--~~~~~~l~~~~~~-~~~~~~~~~~~~~~l~~~l~D~~IsR~~~~WG~~iP~~~--------~~viy 264 (560)
T 3h99_A 196 VMRDSEHFFFDL--PSFSEMLQAWTRS-GALQEQVANKMQEWFESGLQQWDISRDAPYFGFEIPNAP--------GKYFY 264 (560)
T ss_dssp EEEEEEEEEECG--GGGHHHHHHHHHT-SCSCHHHHHHHHHHHHHCCCCEECEEESSCSSCBCTTCT--------TEEEC
T ss_pred eEEecceEEEEH--HHHHHHHHHHHHh-CCCCHHHHHHHHHHHhcCCCCCCccccCCcCCeeCCCCC--------CceEE
Confidence 344688999999 7899999999988 5678899999999997 99999999999 8999999843 47999
Q ss_pred eehhHHHHHhhcCccCCCCCccCCCCcCCCCCcceeEEecccCCCCCCCCCChhhHHHHHHhhccccccc-----eEeec
Q psy5309 875 MAYYTVAHLLQGGTFRGENGNALNIKAEDLTPEVWDYVFFKAAPFPPKCRVPKAKLDIMRREFQYWYPVD-----LRCSG 949 (1618)
Q Consensus 875 ~~~~ti~~~l~~~~~~g~~~~~l~~~~~~l~~~~~d~~f~~~~~~~~~~~~~~~~~~~~~~~~~~w~p~D-----l~v~G 949 (1618)
+|+++...|+... ...+.. .+....|+.|||.| +++.|
T Consensus 265 vW~da~~~y~s~~-----------------------------------~~~~~~--~~~~~~~~~~wp~~~~~~~~~~~G 307 (560)
T 3h99_A 265 VWLDAPIGLMGSF-----------------------------------KNLCDK--RGDSVSFDEYWKKDSTAELYHFIG 307 (560)
T ss_dssp HHHHHHHHHHHHH-----------------------------------HHHHHH--HTCSSHHHHHHBTTCCSEEEEEEE
T ss_pred eCcccchhHHHHH-----------------------------------HHHhhc--cCChhhHHHhCcCCCCceeEEEec
Confidence 9999999887520 000000 00013578899999 99999
Q ss_pred ccccccchhHHHHHHhhccCCCCCCCCccccCCCccchhhhHHHHhhhhhhhhhhcccccccccchhhhhhhhhccCCCC
Q psy5309 950 KDLIQNHLTFFIYIHTAIWGDEPEMWPRGIRANGHLLLNSAKDLIQNHLTFFIYKLFSDLIQNHLTFFIYIHTAIWGDEP 1029 (1618)
Q Consensus 950 ~D~~~~Hl~f~lf~h~~lw~~~~~~wp~~lr~~g~~~~~e~~~~i~~~~~~~i~~~~~~~~~~h~~~~i~~~~~~~p~~~ 1029 (1618)
+|++++|..| | |+.+. + + .
T Consensus 308 ~D~~~fh~~~--------~-------~a~l~----------------------------------------~-~-----g 326 (560)
T 3h99_A 308 KDIVYFLSLF--------W-------PAMLE----------------------------------------G-S-----N 326 (560)
T ss_dssp GGGHHHHHTH--------H-------HHHHH----------------------------------------H-T-----T
T ss_pred cccchhHHHH--------H-------HHHHH----------------------------------------h-C-----C
Confidence 9999988666 2 21100 0 0 1
Q ss_pred CCcCcEEEEccceeeCCccceeccCcccChHHHHhhcCccceEEeecccCccc-ccccccHHHHHH-----HHhhHHHHH
Q psy5309 1030 EMWPRGIRANGHLLLNSAKMSKSEGNFLTLTEAVKKFSADGMRLCLADSGDSV-EDANFVESMADA-----GILRLYTFI 1103 (1618)
Q Consensus 1030 ~~~pk~v~~hG~vl~~G~KMSKS~GNvV~p~eii~~yGaDalRl~l~~~~~~~-~D~~fs~~~~~~-----~~~kl~N~~ 1103 (1618)
.++|+.+++||||+.+|+|||||+||+|+|.+++++||+|++|||+++.++.+ +|++|+++.+.+ ..++++|++
T Consensus 327 ~~~p~~v~~hg~v~~~G~KMSKS~GNvv~p~d~i~~~GaDalR~~ll~~~~~~~~d~~f~~~~~~~~~~~~l~~~l~n~~ 406 (560)
T 3h99_A 327 FRKPSNLFVHGYVTVNGAKMSKSRGTFIKASTWLNHFDADSLRYYYTAKLSSRIDDIDLNLEDFVQRVNADIVNKVVNLA 406 (560)
T ss_dssp BCCCSEEEEECCEEETTEECCTTTTCCCBHHHHHHHSCHHHHHHHHHHHCCSSCCCEEECHHHHHHHHHHHCCCCCTHHH
T ss_pred CCCCcEEEEEeEEEeCCeeccccCCCcCCHHHHHHHcCcHHHHHHHHHhCCCCCCCCCcCHHHHHHHHHHHHHHHHHHHH
Confidence 23589999999999999999999999999999999999999999999887777 899999987643 346889999
Q ss_pred HHHHHHHHhcccCCCCCCCCcchHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHhccc----C--c-
Q psy5309 1104 EWVKEILATQSTLRTGSQDSFNDKVFLSEMNLKIKETEDHYTKMLFKEALRTGFFELQAARDKYRELTAAE----G--G- 1176 (1618)
Q Consensus 1104 ~~l~~~l~~~~~~~~~~~~~~~D~~~l~~l~~~i~~v~~~~e~~~f~~al~~~~~~l~~~~n~Yi~~~k~~----~--~- 1176 (1618)
+|+.+++.+.... .......|+|++++++.+++++.++|++|+|+.|++. ++++++.+|+|++.++|+ . .
T Consensus 407 ~R~~~~~~~~~~~--~~~~~~~d~~ll~~l~~~~~~v~~~~e~~~~~~a~~~-l~~l~~~~n~Yi~~~kpw~l~k~~~~~ 483 (560)
T 3h99_A 407 SRNAGFINKRFDG--VLASELADPQLYKTFTDAAEVIGEAWESREFGKAVRE-IMALADLANRYVDEQAPWVVAKQEGRD 483 (560)
T ss_dssp HTTHHHHHHHSTT--BCCSSCSCHHHHHHHHHTHHHHHHHHHTTCHHHHHHH-HHHHHHHHHHHHHHHCHHHHTTSTTCH
T ss_pred HHHHHHHHHhcCC--CCCCccccHHHHHHHHHHHHHHHHHHHccCHHHHHHH-HHHHHHHHHHHHHhcCchhhcCCcCcH
Confidence 8888877653110 0112357999999999999999999999999999999 688999999999998863 1 1
Q ss_pred ----chHHHHHHHHHHHHHhcCcCCCCchhHHHHHhCCC
Q psy5309 1177 ----MHRTLVLRFVEVQALLLCPVCPHVAEHVYQLLGKD 1211 (1618)
Q Consensus 1177 ----~~~~~l~~~l~~l~~lLaP~~P~~aEei~~~Lgkd 1211 (1618)
....++.++++.+++||+|||||+||+||+.||.+
T Consensus 484 ~~~~~~~~~~~~~l~~~~~lL~P~~P~~aeei~~~L~~~ 522 (560)
T 3h99_A 484 ADLQAICSMGINLFRVLMTYLKPVLPKLTERAEAFLNTE 522 (560)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHTSC
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHcCCC
Confidence 11234678999999999999999999999999854
No 13
>1wz2_A Leucyl-tRNA synthetase; ligase, riken structural genomics/proteomics initiativ structural genomics, ligase-RNA complex; 3.21A {Pyrococcus horikoshii}
Probab=100.00 E-value=5.8e-62 Score=651.92 Aligned_cols=672 Identities=25% Similarity=0.426 Sum_probs=455.3
Q ss_pred CCceeeccccCCCCCcccCcccchhHHhHHHhhhhccccccC-CCCCCeEEeCCCCC-CCCcchhhhhchhhhhHHHHHH
Q psy5309 43 DKFFTTFPFPYMNGRLHLGHTFSLSKFREKIYEETVGDAVRS-SPDDKFFTTFPFPY-MNGRLHLGHTFSLSKCEFSVRF 120 (1618)
Q Consensus 43 ~k~~~~~~~py~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~f~v~~ppP~-~nG~LHiGHa~~~~~~D~~aR~ 120 (1618)
+|||++.|+||+||.+||||.+++ ++.|+.+| +++++|.|++||.+ .+|.+|-+-|.....+|
T Consensus 34 ~kf~i~~~pPy~nG~lHiGH~~~~----------~~~Dii~Ry~rm~G~~Vl~~~GwD~~GlPie~~a~~~~~~~----- 98 (967)
T 1wz2_A 34 KKFYITVAFPYLSGHLHVGHARTY----------TIPDVIARFKRMQGYNVLFPMAWHITGSPIVGIAERIKNRD----- 98 (967)
T ss_dssp GCCBEEECCCBCSSCCBHHHHHHH----------HHHHHHHHHHHHTTCCCBCCCCBBCCSSHHHHHHHHHHTTC-----
T ss_pred CcEEEEeCCCCCCCCcchhhhHHH----------HHHHHHHHHHHcCCCccCCCCcCCCCCcHHHHHHHHhhccc-----
Confidence 589999999999999999999888 44455555 35888999999999 89999876543211111
Q ss_pred HHHcCCcccccccccCCChhhHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCCCCCchhcccccCcchHHHHHhhhhHHH
Q psy5309 121 NRLKGKRVLFPFGFHCTGMPIKACADKLKREMESFGFPPQFPSEDTEPQTDKDDDDPVIKDKSKGKKSKAVAKAGSAKYQ 200 (1618)
Q Consensus 121 ~rm~G~~V~~~~G~d~~G~pIe~~a~k~~~~~~~~gi~~~~~e~~~~~~~~~~~~~~~~~~~~~g~~~~~~ak~~~~~~~ 200 (1618)
-+.. + ...+.+|++. +.+ -+.....+.+...... +
T Consensus 99 ------------------~~~~---~---~~~~~~gi~~----------------~~~----~~~~~~~~~~~~~~~~-~ 133 (967)
T 1wz2_A 99 ------------------PKTI---W---IYRDVYKVPE----------------EIL----WTFEDPINIVKYFMKA-A 133 (967)
T ss_dssp ------------------HHHH---H---HHHTTSCCCH----------------HHH----HGGGSHHHHHHHHHHH-H
T ss_pred ------------------hhHH---H---HHHHhcCCCH----------------HHH----HHHHHHHHHHHHHHHH-H
Confidence 0100 0 0011123321 000 0011233444444443 4
Q ss_pred HHHHHhcCCCHHHHHHHhhhh--hHHhhchhHHHHHHHHcCCccc------ccCceeecCCChhhhHHHHHHHHHHHhcC
Q psy5309 201 WQIMQSLGLEDDEIRKFADAS--HWLDHFPPLAVQDLRSIGIHVD------WRRTFITTDSNPFFDSFVRWQFMRLRDRH 272 (1618)
Q Consensus 201 ~~~~~~~g~~~~e~~~f~~~~--~~~~~~~~~~~~~l~~lGi~~D------w~~~~~T~d~~p~y~~~v~~~f~~L~~kG 272 (1618)
.+.++++|++.||.+++.++. +.+.++..+++.+|...|+.+- |...-.|.-.+-+.. +..+
T Consensus 134 ~~~~~~lG~~~Dw~r~~~T~d~np~y~~~v~~~F~~L~~kGliyr~~~~v~wcp~~~T~Lad~Ev~----------~~~~ 203 (967)
T 1wz2_A 134 KETFIRAGFSVDWSREFYTTSLFPPFSKFIEWQFWKLKEKGYIVKGAHRVRWDPVVGTPLGDHDLM----------EGED 203 (967)
T ss_dssp HHHHHTTTCCCCTTSCCBCSTTSHHHHHHHHHHHHHTTTTTCEEECCCCCEECTTTSCBCCSSSCS----------SCCC
T ss_pred HHHHHHhCceEecCCCeEECCCChhHHHHHHHHHHHHHHCCCEEEeceEecccCCCCCCcchhhhc----------cCCC
Confidence 577899999999999999888 9999999999999999997665 433322322220000 0000
Q ss_pred -----ccc-----c----CceeEEEecCCCCcccchhhccCCCCCCe-eEEEEEEeeccCCccccccCCCCCcEEEEeec
Q psy5309 273 -----KIK-----Y----GKRYTVFSPRDNQPCMDHDRASGEGVGPQ-EYTLIKMRLVKPYPAKLCCLDSKPVFLVAATL 337 (1618)
Q Consensus 273 -----~iy-----~----g~~~v~w~p~~~t~lsd~Ev~~~~~~~~~-~y~~~~~~~~~~~~~~~~~~~~~~~~l~i~TT 337 (1618)
+++ . +...+.|..+-.|-.++-=+.- .|. .|+.++.. + ...+..++++..
T Consensus 204 ~~~~~~~~v~f~~~~~~~~~~l~i~TTrPeTl~g~~avav----~P~~~Y~~~~~~--~---------~~~~~~~i~a~~ 268 (967)
T 1wz2_A 204 VPILDYIIIKFELRENGEVIYLPAATLRPETVYGVTNMWV----NPNATYVKAKVR--R---------KDKEETWIVSKE 268 (967)
T ss_dssp CCEECCEEEEEECCCSSSCCEEEEEESCGGGGGGCCEEEE----CSSSCEEEEEEE--C---------SSCEEEEEEEHH
T ss_pred ceeceeEEEEEEecCCCCceEEEEEcCCchHhhhheEEEE----CCCCcEEEEEec--C---------CCcceeeehHHH
Confidence 000 0 1345566666666555532221 121 23322211 0 000011222211
Q ss_pred Ccccccc---CceEE--eC-CCC-CceeecccCCccEEEEec-ccccCccCCCeeEEecCCCCeeEEEcC----------
Q psy5309 338 RPETMYG---QTNAW--VR-PDM-AYIALSCLDSKPVFLVAA-TLRPETMYGQTNAWVRPDMAYIAFTTA---------- 399 (1618)
Q Consensus 338 rPeTl~g---~~ava--V~-P~~-~Y~~~~~~~~~~~~iv~~-~~~~~t~~Gt~~v~v~P~~~y~~~~~~---------- 399 (1618)
.-+.+.. ...+. +. -+. .-...+|+.+++++|+++ +|.++ +|||+|+++|+|+..||...
T Consensus 269 ~~~~~~~~~~~~~~~~~~~G~~l~G~~~~~P~~~~~ipi~~~~~V~~~--~GTG~V~~~Pah~~~Dy~~~~~~~~~~~~~ 346 (967)
T 1wz2_A 269 AAYKLSFQDREIEVIEEFKGEKLIGKYVRNPVSGDEVIILPAEFVDPD--NATGVVMSVPAHAPFDHVALEDLKRETEIL 346 (967)
T ss_dssp HHHHHHHSSCEEEEEEECCSSTTSSCEEECSSSSCEEEEEECSSCCSS--STTSCEEECTTSCTTTTTTTSCCSCCSCCC
T ss_pred HHHHHHhhccCcEEEEEEEchhhcCCEEECCCCCCceEEEecccccCC--CCcccEEeecCCCHHHHHHHHhhccchhHH
Confidence 1111000 00000 00 000 011234667888888776 47776 99999999999988887631
Q ss_pred C--C----------cEEEecc---------------------------------------cccc-ccccCCCchhhhHHH
Q psy5309 400 T--G----------EVFVCTE---------------------------------------RSAR-NMAYQGFTEVEGKIN 427 (1618)
Q Consensus 400 ~--~----------~~~i~~~---------------------------------------~~~~-~~~~~g~~~~~a~~~ 427 (1618)
. | .+.+++. ++.. ...|.|+.+++|+..
T Consensus 347 ~k~~l~~~~~~~l~~i~vi~~~~~g~~~~~~~~~~~~i~~~~d~~~l~~a~~~~y~~~~~~G~~~~g~~~G~~v~ea~~~ 426 (967)
T 1wz2_A 347 EKYDIDPRIVENITYISLIKLEGYGDFPAVEEVNKLGIKSQKDKEKLEQATKTIYKAEYHKGIFKVPPYEGKPVQEVKEA 426 (967)
T ss_dssp CTTCCCCCCC----------------CCSSCCTTTSSSCCCSSCTTHHHHTTHHHHHHHHSCBCCSSSSCSSBHHHHTTT
T ss_pred HHcCCchhhcccccceeeeecCCccccchhhhhhhccCCCccchHHHHHHHHHhhhccccCceEeccCcCCcCHHHHHHH
Confidence 0 1 1112110 0000 235999999999999
Q ss_pred Hhhhhcc-------------CcceecCCEEEec-cccceeeccCCchHHHHHHHHhccccccchhhhhhHhhhhhccccc
Q psy5309 428 VLLRLTG-------------QVCIRSGDECVVA-LCDQWYLDYGEPTWKAAAEQCLANMNTYHDEVRRNFGASLNWLHEY 493 (1618)
Q Consensus 428 ii~~l~~-------------~~l~r~g~~i~~~-l~~QWfl~~~~~~~k~~~~~~~~~~~~~p~~~~~~~~~~~~~l~dW 493 (1618)
|++.|+. ..|+|||++++++ +++|||++|++++++..+.+++++++++|+..++.+.+|++|++||
T Consensus 427 i~~~L~~~g~l~~~~~~~~~p~~~R~g~~~i~~~~~~qWFi~~~~~~~k~~~l~~~~~~~~~P~~~~~~~~~~l~~l~DW 506 (967)
T 1wz2_A 427 IAKEMLEKGIAEIMYEFAEKNVISRFGNRAVIKIIHDQWFIDYGNPEWKEKARKALERMKILPETRRAQFEAIIDWLDKK 506 (967)
T ss_dssp THHHHHHHTSEEECCEESSSCCBCSSSSBCEECCCSSCEEEESCCTTHHHHHHHHHTTSCEESSTTHHHHHHHHHSCCEE
T ss_pred HHHHHHhCCCceEEEecCCCceECCCCCEEEEeccCCccceecCchHHHHHHHHhhhccEeeCccccchHHHhhhcccCe
Confidence 9999874 3467999999999 6999999999988999999999999999999999999999999999
Q ss_pred eeeccccCCccCCCCCcchhhccCCCcccceEEEeeccccCcccccCCCCcccccccCCCcceeeeeeccC------CCC
Q psy5309 494 ACSRTYGLGTKLPWDEQWLIESLSDSTIYMAYYTVAHLLQGGTFRGENGNALNIKAEDLTPEVWDYVFFKS------APF 567 (1618)
Q Consensus 494 ciSRq~~WG~~iP~~~~w~i~~~~~~~i~~a~~~~~~~~~~~~~~g~~~~~~~v~~~~gtg~v~~~~~~~~------~~~ 567 (1618)
|||||++||+|||||+.|++++++|+++|+++|++++.+.. +.+. ..+++++.++.+|||+|... .++
T Consensus 507 ~ISRqr~WG~piP~d~~~~~~~~~ds~iYv~~~~~~~~~~~--~~~~----~g~~~~~l~~~~~d~~~~~~~~~g~~~~~ 580 (967)
T 1wz2_A 507 ACARKIGLGTPLPWDPEWVIESLSDSTIYMAYYTISRHINK--LRQE----GKLDPEKLTPEFFDYIFLEEFSEDKEKEL 580 (967)
T ss_dssp CCCBSSSSSEECTTCTTSEECHHHHTTSTHHHHHHHHHHHH--HHHT----TCCCGGGCCHHHHHHTTTSCCCHHHHHHH
T ss_pred eeccCCCCCccCCcCcccccccCCCCceEeehhhhhhHHHH--HHHh----cCCChHHcCcccceeeccCccccCccccc
Confidence 99999999999999999999999999999999988765431 1010 13566788899999998641 011
Q ss_pred CCCCCCChhhHHHHHhhhccccccceeccccccCCCCchhhhHhhhccchhhhhhhhhhhhhccCCccccCCCCcccccc
Q psy5309 568 PPKCRVPKAKLDIMRREFQYWYPVDLRCSGKVSTKLPWDEQWLIESLSDSTIYMAYYTVAHLLQGGTFRGENGNALNINC 647 (1618)
Q Consensus 568 ~~~~~~p~~~~~~~~~~f~~wyp~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 647 (1618)
.+.+|+|...+.++|++|+||||.|+.+.|. .+
T Consensus 581 ~~~sG~~~~~~~~~~~~~~~w~P~Di~~~G~-----------------------------------------D~------ 613 (967)
T 1wz2_A 581 EKKTGIPAEIIHEMKEEFEYWYPLDWRCSGK-----------------------------------------DL------ 613 (967)
T ss_dssp HHHHTCCHHHHHHHHHHHHHHCSCSEEEEEG-----------------------------------------GG------
T ss_pred hhhcCCCHHHHhhhHHHHHhhCCCeEEeeee-----------------------------------------Cc------
Confidence 2245688888888999999999999887765 00
Q ss_pred eeeeeccCCCCccccccCCCCCchHHHHHHHhccCCcccHHHHHHHHHHHHhhcccceeeeecccCCcchHHHHHHHHHH
Q psy5309 648 VIVFQVLPYDPVPIIQVPEYGNLCAVTVYEKLKIQSQNDKDKLQEAKELVYLKGFYDGIMLVGEFKGKKVQEVKKLLQKK 727 (1618)
Q Consensus 648 ~~~~~~~~~~~~~~i~~~~~g~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~G~~~~~~~~G~~v~~a~~~i~~~ 727 (1618)
+
T Consensus 614 --------------i----------------------------------------------------------------- 614 (967)
T 1wz2_A 614 --------------I----------------------------------------------------------------- 614 (967)
T ss_dssp --------------T-----------------------------------------------------------------
T ss_pred --------------c-----------------------------------------------------------------
Confidence 0
Q ss_pred HHHhCCcccCCCcccceeeecccccccccCCCCceEeeeCCCchhhHHhhhhcCCCCCcccccccCCeEEEeccCcceee
Q psy5309 728 IDIIGVALKAPVTSHSVIYTLPMLSIREDKGTGIVTSVPSDSPDDYAALVDLKKKPPFREKYHVTDEMCVVALCDQWYLD 807 (1618)
Q Consensus 728 L~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~v~~r~g~d~~~~~~l~~~~~~~~~~~H~y~~c~~~~~~QWfi~ 807 (1618)
.+|.+. |
T Consensus 615 -----------------------------------------------------------------~~H~~~------~-- 621 (967)
T 1wz2_A 615 -----------------------------------------------------------------PNHLTF------F-- 621 (967)
T ss_dssp -----------------------------------------------------------------TTHHHH------H--
T ss_pred -----------------------------------------------------------------hhHHHH------H--
Confidence 011000 0
Q ss_pred cCCchHHHHHHHHHhcccccChHHHHHHHHhhcCcCceeecccCCCCcccCCCccccccccCCcceEeehhHHHHHhhcC
Q psy5309 808 YGEPTWKAAAEQCLANMNTYHDEVRRNFGASLNWLHEYACSRTYGLGTKLPWDEQWLIESLSDSTIYMAYYTVAHLLQGG 887 (1618)
Q Consensus 808 ~~~~~~k~~~~~~i~~v~~~P~~~k~~~~~~l~~l~DW~ISRqr~WG~PIP~d~~w~~e~~~D~~iy~~~~ti~~~l~~~ 887 (1618)
...+..
T Consensus 622 -----------------------------------------------------------------------~~~~~a--- 627 (967)
T 1wz2_A 622 -----------------------------------------------------------------------IFNHVA--- 627 (967)
T ss_dssp -----------------------------------------------------------------------HHHHHH---
T ss_pred -----------------------------------------------------------------------HHHHHH---
Confidence 000000
Q ss_pred ccCCCCCccCCCCcCCCCCcceeEEecccCCCCCCCCCChhhHHHHHHhhccccccceEeecccccccchhHHHHHHhhc
Q psy5309 888 TFRGENGNALNIKAEDLTPEVWDYVFFKAAPFPPKCRVPKAKLDIMRREFQYWYPVDLRCSGKDLIQNHLTFFIYIHTAI 967 (1618)
Q Consensus 888 ~~~g~~~~~l~~~~~~l~~~~~d~~f~~~~~~~~~~~~~~~~~~~~~~~~~~w~p~Dl~v~G~D~~~~Hl~f~lf~h~~l 967 (1618)
. ++ . ..
T Consensus 628 ------------------------------------------------~----~~-------~---------------~~ 633 (967)
T 1wz2_A 628 ------------------------------------------------I----FR-------E---------------EH 633 (967)
T ss_dssp ------------------------------------------------H----SC-------S---------------TT
T ss_pred ------------------------------------------------H----cC-------c---------------cc
Confidence 0 00 0 00
Q ss_pred cCCCCCCCCccccCCCccchhhhHHHHhhhhhhhhhhcccccccccchhhhhhhhhccCCCCCCcCcEEEEccceeeCCc
Q psy5309 968 WGDEPEMWPRGIRANGHLLLNSAKDLIQNHLTFFIYKLFSDLIQNHLTFFIYIHTAIWGDEPEMWPRGIRANGHLLLNSA 1047 (1618)
Q Consensus 968 w~~~~~~wp~~lr~~g~~~~~e~~~~i~~~~~~~i~~~~~~~~~~h~~~~i~~~~~~~p~~~~~~pk~v~~hG~vl~~G~ 1047 (1618)
| |+.+++||||+.+|+
T Consensus 634 ~----------------------------------------------------------------pk~v~~~G~v~~~G~ 649 (967)
T 1wz2_A 634 W----------------------------------------------------------------PKGIAVNGFGTLEGQ 649 (967)
T ss_dssp S----------------------------------------------------------------CCCEEEECCEEESSS
T ss_pred c----------------------------------------------------------------cceEEEeeEEeeCCE
Confidence 2 578999999999999
Q ss_pred cceeccCcccChHHHHhhcCccceEEeecccCcccccccccHHHHHH---HHhhHHHHHHHHHHHHHhcccCCCCCCCCc
Q psy5309 1048 KMSKSEGNFLTLTEAVKKFSADGMRLCLADSGDSVEDANFVESMADA---GILRLYTFIEWVKEILATQSTLRTGSQDSF 1124 (1618)
Q Consensus 1048 KMSKS~GNvV~p~eii~~yGaDalRl~l~~~~~~~~D~~fs~~~~~~---~~~kl~N~~~~l~~~l~~~~~~~~~~~~~~ 1124 (1618)
|||||+||+|+|.+++++||+|++|||+++++++++|++|+++.++. .+++++|+++++.+. ..+.......
T Consensus 650 KMSKS~GNvv~p~d~i~~yGaDalR~~ll~~~~~~~d~~fs~~~~~~~~~~l~rl~n~~~~~~~~-----~~~~~~~~~~ 724 (967)
T 1wz2_A 650 KMSKSKGNVLNFIDAIEENGADVVRLYIMSLAEHDSDFDWRRKEVGKLRKQIERFYELISQFAEY-----EVKGNVELKD 724 (967)
T ss_dssp CCCTTTCCCCBHHHHHHTTCHHHHHHHHHHHCCTTCCEEECHHHHHHHHHHHHHHHHHHHHHHSS-----CCCCCCCCCH
T ss_pred EccccccCCCCHHHHHHHhChHHHHHHHHhCCCCCCCcccCHHHHHHHHHHHHHHHHHHHHHhcC-----CCCCcccCCH
Confidence 99999999999999999999999999999888999999999988755 445666665554321 1111223456
Q ss_pred chHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHhcccC-cchHHHHHHHHHHHHHhcCcCCCCchhH
Q psy5309 1125 NDKVFLSEMNLKIKETEDHYTKMLFKEALRTGFFELQAARDKYRELTAAEG-GMHRTLVLRFVEVQALLLCPVCPHVAEH 1203 (1618)
Q Consensus 1125 ~D~~~l~~l~~~i~~v~~~~e~~~f~~al~~~~~~l~~~~n~Yi~~~k~~~-~~~~~~l~~~l~~l~~lLaP~~P~~aEe 1203 (1618)
.|+|++++++.+++++.++|++|+|+.|+..+++++.+.+|+|++.+++.. +..+.++.++++.+++||+|||||+|||
T Consensus 725 ~D~~il~~l~~~~~~v~~~~e~~~f~~A~~~~~~~l~~~~n~Yi~~~k~~~~~~~~~~l~~~l~~l~~LLaP~~P~~aEe 804 (967)
T 1wz2_A 725 IDRWMLHRLNKAIKETTNALEEFRTRTAVQWAFYSIMNDLRWYLRRTEGRDDEAKRYVLRTLADVWVRLMAPFTPHICEE 804 (967)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHTHHHHHHHHHHHHHTTTCCCHHHHHHHHHHHHHHHHHHTTTSHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHhccccchHHHH
Confidence 899999999999999999999999999999867889999999999987532 2466789999999999999999999999
Q ss_pred HHHHhCCCccccccchhhhhhhcccCCCC
Q psy5309 1204 VYQLLGKDLIQNHLTFFIYIHTAIWGDEP 1232 (1618)
Q Consensus 1204 i~~~Lgkd~~svh~~~f~s~~~~~~p~~~ 1232 (1618)
||+.||.+ .|+|.+.||..+
T Consensus 805 iw~~L~~~---------~sv~~~~wP~~~ 824 (967)
T 1wz2_A 805 LWEKLGGE---------GFVSLAKWPEPV 824 (967)
T ss_dssp HHHHSSCC---------SCGGGSCCCCCC
T ss_pred HHHhcCCC---------CceeccCCCCCC
Confidence 99999853 256778887644
No 14
>3kfl_A Methionyl-tRNA synthetase; parasite, aminoacyl-tRNA synthetase, tRNA ligase metrs, methionine, translation, ATP-binding; HET: ME8; 2.00A {Leishmania major}
Probab=100.00 E-value=4.9e-61 Score=611.24 Aligned_cols=306 Identities=17% Similarity=0.235 Sum_probs=239.2
Q ss_pred cCcceeecCCchHHHHHHHHHhc--ccccChHHHHHHHHhhc-CcCceeecc----cCCCCcccCCCccccccccCCcce
Q psy5309 801 CDQWYLDYGEPTWKAAAEQCLAN--MNTYHDEVRRNFGASLN-WLHEYACSR----TYGLGTKLPWDEQWLIESLSDSTI 873 (1618)
Q Consensus 801 ~~QWfi~~~~~~~k~~~~~~i~~--v~~~P~~~k~~~~~~l~-~l~DW~ISR----qr~WG~PIP~d~~w~~e~~~D~~i 873 (1618)
++|||+++ +.+++++++.+++ ..++|+..++++.+||+ +++|||||| |++||+|||.|+ ++++
T Consensus 188 ~~~~f~~l--~~~~~~l~~~~~~~~~~i~P~~~~~~~~~wl~~gl~D~~ISR~~~~~~~WGipiP~~~--------~~v~ 257 (564)
T 3kfl_A 188 EENYMFRL--SAFRERLLKYFHDHPNCIVPEFRRREVIKTVEKGLFDLSISRKRESVMNWSIPVPGDE--------RHCI 257 (564)
T ss_dssp EEEEEECG--GGGHHHHHHHHHHCTTSEESHHHHHHHHHHHHHCCCCEECEEEGGGGTTCSCEETTEE--------EEEE
T ss_pred cceeEEEH--HHHHHHHHHHHHhCCCccCCHHHHHHHHHHHhCCCCCccccCcCCCCCCCCeecCCCC--------CCEE
Confidence 34566665 4556666666653 23579999999999996 999999999 899999999843 3789
Q ss_pred EeehhHHHHHhhcCccCCCCCccCCCCcCCCCCcceeEEecccCCCCCCCCCChhhHHHHHHhh--ccccccceEeeccc
Q psy5309 874 YMAYYTVAHLLQGGTFRGENGNALNIKAEDLTPEVWDYVFFKAAPFPPKCRVPKAKLDIMRREF--QYWYPVDLRCSGKD 951 (1618)
Q Consensus 874 y~~~~ti~~~l~~~~~~g~~~~~l~~~~~~l~~~~~d~~f~~~~~~~~~~~~~~~~~~~~~~~~--~~w~p~Dl~v~G~D 951 (1618)
|||+++...|+.. ..||.+.... . .+...+ +.|||+|++++|+|
T Consensus 258 yVWfDa~~~y~s~----------------------~~~~~~~~~~---------~---~~~~~~~~~~~wp~dv~~~GkD 303 (564)
T 3kfl_A 258 YVWLDALFNYYTG----------------------ALTRVATDGT---------E---TLDEDHHALNRWPADVHVVGKD 303 (564)
T ss_dssp CHHHHHHTHHHHH----------------------HHEEECTTSC---------E---EECSSSTTTTCCSCSEEEEEGG
T ss_pred EEeccCcHHHHHH----------------------hCcccccccc---------c---cchhcchhhhcCccceEEEeec
Confidence 9999999888852 0111110000 0 000124 67899999999999
Q ss_pred ccccchhHHHHHHhhccCCCCCCCCccccCCCccchhhhHHHHhhhhhhhhhhcccccccccchhhhhhhhhccCCCCCC
Q psy5309 952 LIQNHLTFFIYIHTAIWGDEPEMWPRGIRANGHLLLNSAKDLIQNHLTFFIYKLFSDLIQNHLTFFIYIHTAIWGDEPEM 1031 (1618)
Q Consensus 952 ~~~~Hl~f~lf~h~~lw~~~~~~wp~~lr~~g~~~~~e~~~~i~~~~~~~i~~~~~~~~~~h~~~~i~~~~~~~p~~~~~ 1031 (1618)
|+++|..| | |+.|.. + ..+
T Consensus 304 ii~FH~~~--------w-------pa~L~a-----------------------------------------~-----g~~ 322 (564)
T 3kfl_A 304 ILKFHAIY--------W-------PAFLMS-----------------------------------------A-----ELP 322 (564)
T ss_dssp GHHHHHTH--------H-------HHHHHH-----------------------------------------T-----TCC
T ss_pred ccchHHHH--------H-------HHHHHh-----------------------------------------C-----CCC
Confidence 99998766 3 321100 0 123
Q ss_pred cCcEEEEccceeeCCccceeccCcccChHHHHhhcCccceEEeecccCcccccccccHHHHHH-----HHhhHHHHHHHH
Q psy5309 1032 WPRGIRANGHLLLNSAKMSKSEGNFLTLTEAVKKFSADGMRLCLADSGDSVEDANFVESMADA-----GILRLYTFIEWV 1106 (1618)
Q Consensus 1032 ~pk~v~~hG~vl~~G~KMSKS~GNvV~p~eii~~yGaDalRl~l~~~~~~~~D~~fs~~~~~~-----~~~kl~N~~~~l 1106 (1618)
+|+.|++||||..+|+|||||+||+|+|.+++++||+|++|||+++.+++++|++|+++.+.. .+++++|+++|+
T Consensus 323 ~~~~v~~hg~v~~~G~KMSKS~GNvV~p~d~i~~~G~DalR~~ll~~~~~~~D~~fs~~~~~~~~n~~l~~~l~N~~~R~ 402 (564)
T 3kfl_A 323 LPERLVSHGWWTKDHKKISKSLGNAFDPVEKAKEFGIDALKYFLMRESNFQDDGDYSDKNMVARLNGELADTLGNLVSRC 402 (564)
T ss_dssp CCSCEEEECCEEETTEECCTTTTCCCCHHHHHHHHCHHHHHHHHHHHCCSSCCEECCHHHHHHHHHHTTTTTHHHHHHHH
T ss_pred CCcEEEEcccEeeCCccccccCCCCCCHHHHHHHcCcHHHHHHHHHcCCcccCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 589999999999999999999999999999999999999999999977999999999998754 446899999999
Q ss_pred HHHHHhcc-cCCCCCCCCcchHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHhcccC----c-----
Q psy5309 1107 KEILATQS-TLRTGSQDSFNDKVFLSEMNLKIKETEDHYTKMLFKEALRTGFFELQAARDKYRELTAAEG----G----- 1176 (1618)
Q Consensus 1107 ~~~l~~~~-~~~~~~~~~~~D~~~l~~l~~~i~~v~~~~e~~~f~~al~~~~~~l~~~~n~Yi~~~k~~~----~----- 1176 (1618)
.+++.... ..+........|++++++++.+++++.++|++|+|++|++. ++++++.+|+|++.++|+. .
T Consensus 403 ~~~~~~~~g~~p~~~~~~~~d~~ll~~l~~~~~~v~~a~e~~~~~~a~~~-i~~l~~~~n~Y~~~~kpW~l~~~~~~~~~ 481 (564)
T 3kfl_A 403 VAPKINVNGMWPEPAEYSESDKTLIASLNNLAGTVDHYYCLPDIQHALIA-IFDVLRSLNAYVTENAPWKLVKMDTARLG 481 (564)
T ss_dssp HCTTTSTTSBCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHH-HHHHHHHHHHHHHHHCHHHHTTTCHHHHH
T ss_pred HHHHHhcCCcCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHH-HHHHHHHHHHHHHhcCChhhhcCCHHHHH
Confidence 88776222 22323345678999999999999999999999999999998 7899999999999988731 1
Q ss_pred chHHHHHHHHHHHHHhcCcCCCCchhHHHHHhCCCc
Q psy5309 1177 MHRTLVLRFVEVQALLLCPVCPHVAEHVYQLLGKDL 1212 (1618)
Q Consensus 1177 ~~~~~l~~~l~~l~~lLaP~~P~~aEei~~~Lgkd~ 1212 (1618)
....++.++++.+++||+|||||+||+||+.||.+.
T Consensus 482 ~~~~~l~~~l~~l~~lL~P~~P~~ae~i~~~Lg~~~ 517 (564)
T 3kfl_A 482 TVLYVTMEGLRICTMFLQPVMPQKAKEIMDALGVPE 517 (564)
T ss_dssp HHHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHTCCG
T ss_pred HHHHHHHHHHHHHHHHHHhHhhHHHHHHHHHcCCCc
Confidence 233567889999999999999999999999999753
No 15
>2d5b_A Methionyl-tRNA synthetase; rossmann fold, class 1A AARS, isomerase, structural genomics, NPPSFA; 1.80A {Thermus thermophilus} SCOP: a.27.1.1 c.26.1.1 PDB: 1woy_A 1a8h_A 2d54_A
Probab=100.00 E-value=1.9e-60 Score=601.42 Aligned_cols=270 Identities=20% Similarity=0.267 Sum_probs=211.1
Q ss_pred cChHHHHHHHHhh-cCcCceeecc--cC-CCCcccCCCccccccccCCcceEeehhHHHHHhhcCccCCCCCccCCCCcC
Q psy5309 827 YHDEVRRNFGASL-NWLHEYACSR--TY-GLGTKLPWDEQWLIESLSDSTIYMAYYTVAHLLQGGTFRGENGNALNIKAE 902 (1618)
Q Consensus 827 ~P~~~k~~~~~~l-~~l~DW~ISR--qr-~WG~PIP~d~~w~~e~~~D~~iy~~~~ti~~~l~~~~~~g~~~~~l~~~~~ 902 (1618)
.|+..++++.+|+ ++++|||||| || .||+|||.|+ +.++|+|+++...++..
T Consensus 182 ~p~~~~~~~~~~l~~~l~Dw~iSRp~~~~~WG~piP~~~--------~~v~~vWfds~~~y~~~---------------- 237 (500)
T 2d5b_A 182 RPEGYRNEVLAMLAEPIGDLSISRPKSRVPWGIPLPWDE--------NHVTFVWFDALLNYVSA---------------- 237 (500)
T ss_dssp ESHHHHHHHHHHHTSCCCCEECEEETTTCCSSCEETTEE--------EEEECHHHHHHTHHHHT----------------
T ss_pred CCHHHHHHHHHHHhcCCCCeecccccccccCccccCCCC--------CCeeEEccccchhhHHH----------------
Confidence 4677778888899 5789999999 77 5999999843 36889999998777741
Q ss_pred CCCCcceeEEecccCCCCCCCCCChhhHHHHHHhhccccccceEeecccccccchhHHHHHHhhccCCCCCCCCccccCC
Q psy5309 903 DLTPEVWDYVFFKAAPFPPKCRVPKAKLDIMRREFQYWYPVDLRCSGKDLIQNHLTFFIYIHTAIWGDEPEMWPRGIRAN 982 (1618)
Q Consensus 903 ~l~~~~~d~~f~~~~~~~~~~~~~~~~~~~~~~~~~~w~p~Dl~v~G~D~~~~Hl~f~lf~h~~lw~~~~~~wp~~lr~~ 982 (1618)
..++ .+ .+ ++.|||+|++++|+||+++|..| | |+.
T Consensus 238 --------------~g~~------~~-----~~-~~~~~p~di~~~G~D~~~fh~~~--------~-------~a~---- 272 (500)
T 2d5b_A 238 --------------LDYP------EG-----EA-YRTFWPHAWHLIGKDILKPHAVF--------W-------PTM---- 272 (500)
T ss_dssp --------------TTTT------TC-----HH-HHHHGGGEEEEEEGGGHHHHHTH--------H-------HHH----
T ss_pred --------------cCCC------CC-----ch-HHHcCCCeEEEEeechhhhHHHH--------H-------HHH----
Confidence 0111 11 11 66788999999999999988665 2 110
Q ss_pred CccchhhhHHHHhhhhhhhhhhcccccccccchhhhhhhhhccCCCCCCcCcEEEEccceee-CCccceeccCcccChHH
Q psy5309 983 GHLLLNSAKDLIQNHLTFFIYKLFSDLIQNHLTFFIYIHTAIWGDEPEMWPRGIRANGHLLL-NSAKMSKSEGNFLTLTE 1061 (1618)
Q Consensus 983 g~~~~~e~~~~i~~~~~~~i~~~~~~~~~~h~~~~i~~~~~~~p~~~~~~pk~v~~hG~vl~-~G~KMSKS~GNvV~p~e 1061 (1618)
..+. + .++|+++++||||+. +|+|||||+||+|+|.+
T Consensus 273 --------------------------------------~~~~-g---~~~~~~v~~~G~v~~~~G~KMSKS~GN~i~p~d 310 (500)
T 2d5b_A 273 --------------------------------------LKAA-G---IPMYRHLNVGGFLLGPDGRKMSKTLGNVVDPFA 310 (500)
T ss_dssp --------------------------------------HHHH-T---CCCCSEEEEECCEECTTSSCCCTTTTCCCCHHH
T ss_pred --------------------------------------HHHc-C---CCCCcEEEECceEEeCCCCcccccCCCCCCHHH
Confidence 0000 1 234899999999997 99999999999999999
Q ss_pred HHhhcCccceEEeecccCcccccccccHHHHHHHH-----hhHHHHHHHHHHHHHhcccCCCCCCCCcchHHHHHHHHHH
Q psy5309 1062 AVKKFSADGMRLCLADSGDSVEDANFVESMADAGI-----LRLYTFIEWVKEILATQSTLRTGSQDSFNDKVFLSEMNLK 1136 (1618)
Q Consensus 1062 ii~~yGaDalRl~l~~~~~~~~D~~fs~~~~~~~~-----~kl~N~~~~l~~~l~~~~~~~~~~~~~~~D~~~l~~l~~~ 1136 (1618)
++++||+|++|||+++.+++++|++|+++.+.+.. ++++|+.+++..++.+.... ..+ ...+++++++++.+
T Consensus 311 ~i~~~g~DalR~~ll~~~~~~~d~~fs~~~~~~~~~~~l~~~l~n~~~r~~~~~~~~~~~-~~~--~~~~~~l~~~l~~~ 387 (500)
T 2d5b_A 311 LLEKYGRDALRYYLLREIPYGQDTPVSEEALRTRYEADLADDLGNLVQRTRAMLFRFAEG-RIP--EPVAGEELAEGTGL 387 (500)
T ss_dssp HHHHHCHHHHHHHHHHHSCTTSCEECCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHSTT-BCC--CCCCCGGGGGGGGH
T ss_pred HHHhcCcHHHHHHHHhcCCcccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-CCC--chhHHHHHHHHHHH
Confidence 99999999999999987799999999999876533 56788888777665442110 011 11247889999999
Q ss_pred HHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHhcccC----c-----chHHHHHHHHHHHHHhcCcCCCCchhHHHHH
Q psy5309 1137 IKETEDHYTKMLFKEALRTGFFELQAARDKYRELTAAEG----G-----MHRTLVLRFVEVQALLLCPVCPHVAEHVYQL 1207 (1618)
Q Consensus 1137 i~~v~~~~e~~~f~~al~~~~~~l~~~~n~Yi~~~k~~~----~-----~~~~~l~~~l~~l~~lLaP~~P~~aEei~~~ 1207 (1618)
++++.++|++|+|+.|++. ++++.+.+|+|++.++|+. . ....++.++++.++++|+|||||+||+||+.
T Consensus 388 ~~~v~~a~~~~~~~~a~~~-l~~l~~~~n~y~~~~k~w~~~~~~~~~~~~~~~~l~~~l~~~~~ll~P~~P~~aeei~~~ 466 (500)
T 2d5b_A 388 AGRLRPLVRELKFHVALEE-AMAYVKALNRYINEKKPWELFKKEPEEARAVLYRVVEGLRIASILLTPAMPDKMAELRRA 466 (500)
T ss_dssp HHHHHHHHHTTCHHHHHHH-HHHHHHHHHHHHHHHCHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHTTTSHHHHHHHHHH
T ss_pred HHHHHHHHHccCHHHHHHH-HHHHHHHHHHHHHhcCchhhccCcHHHHHHHHHHHHHHHHHHHHHhhCcccHHHHHHHHH
Confidence 9999999999999999998 7899999999999887641 1 1234577888999999999999999999999
Q ss_pred hCCC
Q psy5309 1208 LGKD 1211 (1618)
Q Consensus 1208 Lgkd 1211 (1618)
||.+
T Consensus 467 l~~~ 470 (500)
T 2d5b_A 467 LGLK 470 (500)
T ss_dssp TTCC
T ss_pred cCCC
Confidence 9875
No 16
>2csx_A Methionyl-tRNA synthetase; ligase, riken structural genomics/proteomics initiative, RSGI, structural genomics, ligase/RNA complex; 2.70A {Aquifex aeolicus} PDB: 2ct8_A*
Probab=100.00 E-value=5.8e-60 Score=595.97 Aligned_cols=266 Identities=21% Similarity=0.311 Sum_probs=210.0
Q ss_pred cChHHHHHHHHhhc-CcCceeecc--cC-CCCcccCCCccccccccCCcceEeehhHHHHHhhcCccCCCCCccCCCCcC
Q psy5309 827 YHDEVRRNFGASLN-WLHEYACSR--TY-GLGTKLPWDEQWLIESLSDSTIYMAYYTVAHLLQGGTFRGENGNALNIKAE 902 (1618)
Q Consensus 827 ~P~~~k~~~~~~l~-~l~DW~ISR--qr-~WG~PIP~d~~w~~e~~~D~~iy~~~~ti~~~l~~~~~~g~~~~~l~~~~~ 902 (1618)
.|+..++++.+|++ +++|||||| || .||+|||.|+. ..+|+|+++...++..
T Consensus 185 ~p~~~~~~~~~~l~~~~~Dw~isR~~~~~~WG~~iP~~~~--------~~i~vW~ds~~~~~s~---------------- 240 (497)
T 2csx_A 185 QPDYRRNEIISFVKQGLKDLSVTRPRSRVKWGIPVPFDPE--------HTIYVWFDALFNYISA---------------- 240 (497)
T ss_dssp CSHHHHHHHHHHHHHCCCCEECEEETTTCCSSEEETTEEE--------EEECSHHHHHTHHHHT----------------
T ss_pred CcHHHHHHHHHHHhcCCccccccccCCCCCCceecCCCCC--------ceEEEecccchhhccc----------------
Confidence 35666677778884 789999999 77 59999998443 4578999987777641
Q ss_pred CCCCcceeEEecccCCCCCCCCCChhhHHHHHHhhccccccceEeecccccccchhHHHHHHhhccCCCCCCCCccccCC
Q psy5309 903 DLTPEVWDYVFFKAAPFPPKCRVPKAKLDIMRREFQYWYPVDLRCSGKDLIQNHLTFFIYIHTAIWGDEPEMWPRGIRAN 982 (1618)
Q Consensus 903 ~l~~~~~d~~f~~~~~~~~~~~~~~~~~~~~~~~~~~w~p~Dl~v~G~D~~~~Hl~f~lf~h~~lw~~~~~~wp~~lr~~ 982 (1618)
++.. .. .+||+|++++|+||+++|..| | |+.+
T Consensus 241 ----------------------~~~~------~~--~~~p~di~~~G~D~~~~H~~~--------~-------~a~l--- 272 (497)
T 2csx_A 241 ----------------------LEDK------VE--IYWPADLHLVGKDILRFHTVY--------W-------PAFL--- 272 (497)
T ss_dssp ----------------------TTTT------HH--HHCSCSCEEEEGGGHHHHHTH--------H-------HHHH---
T ss_pred ----------------------CCCc------ch--hhCCceEEEeecchhHhHHHH--------H-------HHHH---
Confidence 0000 11 345999999999999887654 2 1100
Q ss_pred CccchhhhHHHHhhhhhhhhhhcccccccccchhhhhhhhhccCCCCCCcCcEEEEccceeeCCccceeccCcccChHHH
Q psy5309 983 GHLLLNSAKDLIQNHLTFFIYKLFSDLIQNHLTFFIYIHTAIWGDEPEMWPRGIRANGHLLLNSAKMSKSEGNFLTLTEA 1062 (1618)
Q Consensus 983 g~~~~~e~~~~i~~~~~~~i~~~~~~~~~~h~~~~i~~~~~~~p~~~~~~pk~v~~hG~vl~~G~KMSKS~GNvV~p~ei 1062 (1618)
..+ + .++|+++++||||+.+|+|||||+||+|+|.++
T Consensus 273 --------------------------------------~~~--g---~~~~~~~~~~G~v~~~G~KMSKS~GN~i~~~dl 309 (497)
T 2csx_A 273 --------------------------------------MSL--G---YELPKKVFAHGWWTVEGKKMSKTLGNVVDPYEV 309 (497)
T ss_dssp --------------------------------------HHH--T---CCCCSCEEEECCEESSSSBCCTTTTCCCCHHHH
T ss_pred --------------------------------------HHc--C---CCCCcEEEECcEEEeCCceeCCcCCCCCCHHHH
Confidence 000 1 234899999999999999999999999999999
Q ss_pred HhhcCccceEEeecccCcccccccccHHHHHHHH-----hhHHHHHHHHHHHHHhcccCCCCCCCCcchHHHHHHHHHHH
Q psy5309 1063 VKKFSADGMRLCLADSGDSVEDANFVESMADAGI-----LRLYTFIEWVKEILATQSTLRTGSQDSFNDKVFLSEMNLKI 1137 (1618)
Q Consensus 1063 i~~yGaDalRl~l~~~~~~~~D~~fs~~~~~~~~-----~kl~N~~~~l~~~l~~~~~~~~~~~~~~~D~~~l~~l~~~i 1137 (1618)
+++||+|++|||+++.+++++|++|+++.+.... ++++|+.+|+..++.+.... ......|++++++++.++
T Consensus 310 i~~~g~DalR~~ll~~~~~~~d~~fs~~~l~~~~~~~l~~~l~n~~~R~~~~~~~~~~~---~~~~~~d~~l~~~l~~~~ 386 (497)
T 2csx_A 310 VQEYGLDEVRYFLLREVPFGQDGDFSKKAILNRINGELANEIGNLYSRVVNMAHKFLGG---EVSGARDEEYAKIAQESI 386 (497)
T ss_dssp HHHHCHHHHHHHHHHSSCTTSCEECCHHHHHHHHHHTCCCCCHHHHHHHHHHHHHHSTT---CBCCCCCTTHHHHHHHHH
T ss_pred HHHCCcHHHHHHHHhcCCcccCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC---CCCchhHHHHHHHHHHHH
Confidence 9999999999999987799999999999876543 56889998888877653210 011457899999999999
Q ss_pred HHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHhcccC-----c-----chHHHHHHHHHHHHHhcCcCCCCchhHHHHH
Q psy5309 1138 KETEDHYTKMLFKEALRTGFFELQAARDKYRELTAAEG-----G-----MHRTLVLRFVEVQALLLCPVCPHVAEHVYQL 1207 (1618)
Q Consensus 1138 ~~v~~~~e~~~f~~al~~~~~~l~~~~n~Yi~~~k~~~-----~-----~~~~~l~~~l~~l~~lLaP~~P~~aEei~~~ 1207 (1618)
+++.++|++|+|+.|++. ++++.+.+|+|++.++|+. . ....++.++++.+++||+|||||+||+||+.
T Consensus 387 ~~v~~~~~~~~~~~a~~~-l~~l~~~~n~y~~~~k~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ll~P~~P~~aeei~~~ 465 (497)
T 2csx_A 387 KNYENYMEKVNFYKAIEE-ILKFTSYLNKYVDEKQPWALNKERKKEELQKVLYALVDGLFVLTHLLYPITPNKMKEALQM 465 (497)
T ss_dssp HHHHHHHTTTCHHHHHHH-HHHHHHHHHHHHHHHCHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHHTTTSHHHHHHHHHH
T ss_pred HHHHHHHHccCHHHHHHH-HHHHHHHHHHHHHhcCchhhcccccHHHHHHHHHHHHHHHHHHHHHhcCccCHHHHHHHHH
Confidence 999999999999999998 6899999999999887631 1 1224577889999999999999999999999
Q ss_pred hCCC
Q psy5309 1208 LGKD 1211 (1618)
Q Consensus 1208 Lgkd 1211 (1618)
||.+
T Consensus 466 L~~~ 469 (497)
T 2csx_A 466 LGEK 469 (497)
T ss_dssp TTCS
T ss_pred cCCC
Confidence 9865
No 17
>1gax_A Valrs, valyl-tRNA synthetase; protein-RNA complex, rossmann fold, coiled coil, riken structural genomics/proteomics initiative, RSGI; HET: VAA; 2.90A {Thermus thermophilus} SCOP: a.2.7.3 a.27.1.1 b.51.1.1 c.26.1.1 PDB: 1ivs_A* 1iyw_A
Probab=100.00 E-value=5e-57 Score=592.65 Aligned_cols=187 Identities=21% Similarity=0.277 Sum_probs=159.0
Q ss_pred CcEEEEcccee-eCCccceeccCcccChHHHHhhcCccceEEeecccCcccccccccHHHHH---HHHhhHHHHHHHHHH
Q psy5309 1033 PRGIRANGHLL-LNSAKMSKSEGNFLTLTEAVKKFSADGMRLCLADSGDSVEDANFVESMAD---AGILRLYTFIEWVKE 1108 (1618)
Q Consensus 1033 pk~v~~hG~vl-~~G~KMSKS~GNvV~p~eii~~yGaDalRl~l~~~~~~~~D~~fs~~~~~---~~~~kl~N~~~~l~~ 1108 (1618)
++++++||+++ .+|+|||||+||+|+|.+++++||+|++|||+++.+++++|++|+++.++ +++++++|+.+|+..
T Consensus 512 fk~v~~hG~vld~~G~KMSKSlGNvIdP~dli~~yGaDalR~~ll~~~~~~~D~~fs~~~l~~~~~f~nkl~N~~rf~~~ 591 (862)
T 1gax_A 512 FKTVLLHGLVLDEKGQKMSKSKGNVIDPLEMVERYGADALRFALIYLATGGQDIRLDLRWLEMARNFANKLYNAARFVLL 591 (862)
T ss_dssp BSEEEEECCEECTTSCBCCTTTTCCCCHHHHHHHHCHHHHHHHHHHHCCTTCCEECCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccEEEEeeeEEcCCCCCccccCCCCCCHHHHHHHcChHHHHHHHHhcCCCCCCCccCHHHHHHHHHHHHHHHHHHHHHHh
Confidence 58999999999 89999999999999999999999999999999998899999999998865 467899999888876
Q ss_pred HHHhcccCCCCCCCCcchHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHH--HHHHHHHHHhccc----CcchHHHH
Q psy5309 1109 ILATQSTLRTGSQDSFNDKVFLSEMNLKIKETEDHYTKMLFKEALRTGFFELQ--AARDKYRELTAAE----GGMHRTLV 1182 (1618)
Q Consensus 1109 ~l~~~~~~~~~~~~~~~D~~~l~~l~~~i~~v~~~~e~~~f~~al~~~~~~l~--~~~n~Yi~~~k~~----~~~~~~~l 1182 (1618)
.+.... +........|+|++++++.++++++++|++|+|+.|++. ++.+. +++|+|++.++++ ....+.++
T Consensus 592 ~~~~~~--~~~~~~~~~D~~il~~l~~~~~~v~~a~e~~~f~~A~~~-l~~f~~~~~~n~Yie~~k~~l~~~~~~~~~~l 668 (862)
T 1gax_A 592 SREGFQ--AKEDTPTLADRFMRSRLSRGVEEITALYEALDLAQAARE-VYELVWSEFCDWYLEAAKPALKAGNAHTLRTL 668 (862)
T ss_dssp HSSSCC--CCBCCCCHHHHHHHHHHHHHHHHHHHHHTTTCHHHHHHH-HHHHHHHHTTTTHHHHHHHHHHTTBHHHHHHH
T ss_pred cccCCC--CccccCCHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHH-HHHHHHHHhhHHHHHHcchhhhccHHHHHHHH
Confidence 543211 111235678999999999999999999999999999999 45655 6899999999874 22456789
Q ss_pred HHHHHHHHHhcCcCCCCchhHHHHHhCCCccccccchhhhhhhcccCCC
Q psy5309 1183 LRFVEVQALLLCPVCPHVAEHVYQLLGKDLIQNHLTFFIYIHTAIWGDE 1231 (1618)
Q Consensus 1183 ~~~l~~l~~lLaP~~P~~aEei~~~Lgkd~~svh~~~f~s~~~~~~p~~ 1231 (1618)
.++++.+++||+|||||+|||||+.|+.+ .|+|.+.||..
T Consensus 669 ~~~l~~~~~lL~P~~P~~aEeiw~~L~~~---------~sv~~~~wP~~ 708 (862)
T 1gax_A 669 EEVLAVLLKLLHPMMPFLTSELYQALTGK---------EELALEAWPEP 708 (862)
T ss_dssp HHHHHHHHHHHTTTSHHHHHHHHHHHHCC---------SCGGGSCCCCC
T ss_pred HHHHHHHHHHHhhhhhHHHHHHHHhcCCC---------CeEEecCCCCC
Confidence 99999999999999999999999999742 25677888753
No 18
>1ffy_A Isoleucyl-tRNA synthetase; protein-RNA complex, metal IONS, editing tRNA synthetase, double-sieve, ligase/RNA, mupiroci; HET: MRC; 2.20A {Staphylococcus aureus} SCOP: a.27.1.1 b.51.1.1 c.26.1.1 PDB: 1qu2_A* 1qu3_A*
Probab=100.00 E-value=8.3e-54 Score=567.12 Aligned_cols=190 Identities=17% Similarity=0.167 Sum_probs=157.9
Q ss_pred CcEEEEcccee-eCCccceeccCcccChHHHHhhcCccceEEeecccCcccccccccHHHHHH---HHhhHHHHHHHHHH
Q psy5309 1033 PRGIRANGHLL-LNSAKMSKSEGNFLTLTEAVKKFSADGMRLCLADSGDSVEDANFVESMADA---GILRLYTFIEWVKE 1108 (1618)
Q Consensus 1033 pk~v~~hG~vl-~~G~KMSKS~GNvV~p~eii~~yGaDalRl~l~~~~~~~~D~~fs~~~~~~---~~~kl~N~~~~l~~ 1108 (1618)
++++++|||++ .+|+|||||+||+|+|.+++++||+|++|||+++ +++++|++|+++.++. .+++|+|+++|+++
T Consensus 579 fk~v~~hG~V~d~~G~KMSKSlGNvV~P~dvi~~yGaDalR~~lls-~~~~~D~~fs~~~l~~~~~~~~kl~n~~r~~l~ 657 (917)
T 1ffy_A 579 YKFLLSHGFVMDGEGKKMSKSLGNVIVPDQVVKQKGADIARLWVSS-TDYLADVRISDEILKQTSDDYRKIRNTLRFMLG 657 (917)
T ss_dssp BSEEEEECCEECTTSCCCCSSSSCCCCHHHHHHHTCHHHHHHHHHT-SCTTSCEECCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccceeEeeeEEcCCCcCcccccCCcCChHHHHHhCCHHHHHHHHhc-cCCCCCcccCHHHHHHHHHHHHHHHHHHHHHHh
Confidence 68999999999 6999999999999999999999999999999998 6999999999988654 57899999999887
Q ss_pred HHHhccc---CCCCCCCCcchHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHH--HHHHHHHHhccc----C----
Q psy5309 1109 ILATQST---LRTGSQDSFNDKVFLSEMNLKIKETEDHYTKMLFKEALRTGFFELQA--ARDKYRELTAAE----G---- 1175 (1618)
Q Consensus 1109 ~l~~~~~---~~~~~~~~~~D~~~l~~l~~~i~~v~~~~e~~~f~~al~~~~~~l~~--~~n~Yi~~~k~~----~---- 1175 (1618)
++..... ..+...+...|+|++++++.+++++.++|++|+|+.|++. ++.+.. ++|+|++..|++ .
T Consensus 658 nl~~~~~~~~~v~~~~l~~~D~~il~~l~~~~~~v~~a~e~~~f~~a~~~-l~~f~~~~l~~~Yl~~~k~rl~~~~~~~~ 736 (917)
T 1ffy_A 658 NINDFNPDTDSIPESELLEVDRYLLNRLREFTASTINNYENFDYLNIYQE-VQNFINVELSNFYLDYGKDILYIEQRDSH 736 (917)
T ss_dssp TSTTCCHHHHCCCGGGSCHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHH-HHHHHHCCCCCCHHHHHHHHHTTSCTTCH
T ss_pred hhhccCcccccCCccccCHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHH-HHHHHHHHHHHHHHHhcchhhhccCCCcH
Confidence 6543210 0011234678999999999999999999999999999998 577765 889999998872 1
Q ss_pred --cchHHHHHHHHHHHHHhcCcCCCCchhHHHHHhCCCccccccchhhhhhhcccCCC
Q psy5309 1176 --GMHRTLVLRFVEVQALLLCPVCPHVAEHVYQLLGKDLIQNHLTFFIYIHTAIWGDE 1231 (1618)
Q Consensus 1176 --~~~~~~l~~~l~~l~~lLaP~~P~~aEei~~~Lgkd~~svh~~~f~s~~~~~~p~~ 1231 (1618)
...++++..+++.+++||+|||||+|||||+.|+... -.|+|.+.||..
T Consensus 737 ~r~~~~~~l~~~l~~l~~lLaP~~P~~aEeiw~~l~~~~-------~~sv~~~~wP~~ 787 (917)
T 1ffy_A 737 IRRSMQTVLYQILVDMTKLLAPILVHTAEEVWSHTPHVK-------EESVHLADMPKV 787 (917)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTTSHHHHHHHHTTSTTCS-------SSSGGGSCCCCC
T ss_pred HHHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHcccCC-------CCCeEecCCCCC
Confidence 1345778999999999999999999999999997521 125677777764
No 19
>3pz6_A Leurs, leucyl-tRNA synthetase; editing domain, glleurs_CP1, ligase; 2.60A {Giardia intestinalis}
Probab=100.00 E-value=3.9e-37 Score=346.63 Aligned_cols=231 Identities=34% Similarity=0.552 Sum_probs=179.5
Q ss_pred CCCCcEEEEeecCccccccCceEEeCCCCCceeecccCCccEEEEecccccCccCCCeeEEecCCCCeeEEEcCCCcEEE
Q psy5309 326 DSKPVFLVAATLRPETMYGQTNAWVRPDMAYIALSCLDSKPVFLVAATLRPETMYGQTNAWVRPDMAYIAFTTATGEVFV 405 (1618)
Q Consensus 326 ~~~~~~l~i~TTrPeTl~g~~avaV~P~~~Y~~~~~~~~~~~~iv~~~~~~~t~~Gt~~v~v~P~~~y~~~~~~~~~~~i 405 (1618)
.+.+.+++||||||||||||+||||||+..|+.+... +.+.+|++.
T Consensus 76 ~g~~v~lvIWTTTPWTLPgNtAiaVnPd~~Yv~v~~~-~ge~~IvAe--------------------------------- 121 (311)
T 3pz6_A 76 DNAKVYLLAATLRPETMVGQTNCWVLPTGRYGAYYIN-KDEVIIVSE--------------------------------- 121 (311)
T ss_dssp CSCEEEEEEEESCGGGGGGCCEEEECTTCEEEEEEEE-TTEEEEEEH---------------------------------
T ss_pred CCCCEEEEEEECCchhhhhheEEEECCCCcEEEEEEC-CCCEEEEeH---------------------------------
Confidence 4456799999999999999999999999999998541 223444443
Q ss_pred eccccccccccCCCchhh--hHHHHhhhhccCcceecCCEEEeccccceeeccCCchHHHHHHHHhccccccchhhhhhH
Q psy5309 406 CTERSARNMAYQGFTEVE--GKINVLLRLTGQVCIRSGDECVVALCDQWYLDYGEPTWKAAAEQCLANMNTYHDEVRRNF 483 (1618)
Q Consensus 406 ~~~~~~~~~~~~g~~~~~--a~~~ii~~l~~~~l~r~g~~i~~~l~~QWfl~~~~~~~k~~~~~~~~~~~~~p~~~~~~~ 483 (1618)
+.+.++.+++..... ...+++.+++|..+. |..+.++++..
T Consensus 122 ---~l~e~l~~q~~~~~~~~~~~~vl~~~kG~eL~--G~~~~hPl~~~-------------------------------- 164 (311)
T 3pz6_A 122 ---HAAVNMAHQGLNNNKPFGELDFISEISGSDLL--LATVRAPLSPY-------------------------------- 164 (311)
T ss_dssp ---HHHHHHHTTTCSSSCCTTCCCEEEEEEHHHHT--TCEEECTTCSS--------------------------------
T ss_pred ---HHHHHHHHhcccccccCCCcEEEEEEEhHHhc--CCEEECCCCCC--------------------------------
Confidence 333333344321000 123455566666666 55555444310
Q ss_pred hhhhhccccceeeccccCCccCCCCCcchhhccCCCcccceEEEeeccccCcccccCCCCcccccccCCCcceeeeeecc
Q psy5309 484 GASLNWLHEYACSRTYGLGTKLPWDEQWLIESLSDSTIYMAYYTVAHLLQGGTFRGENGNALNIKAEDLTPEVWDYVFFK 563 (1618)
Q Consensus 484 ~~~~~~l~dWciSRq~~WG~~iP~~~~w~i~~~~~~~i~~a~~~~~~~~~~~~~~g~~~~~~~v~~~~gtg~v~~~~~~~ 563 (1618)
..+| +++. +||+++.|||+| |
T Consensus 165 -------------------~~ip--------------------Il~a--------------d~Vt~d~GTGiV------h 185 (311)
T 3pz6_A 165 -------------------EQIF--------------------VLPL--------------ETIKMDKGTGIV------T 185 (311)
T ss_dssp -------------------SCEE--------------------EEEC--------------TTCCTTSTTSEE------E
T ss_pred -------------------CeeE--------------------EEec--------------CcCccCCCcceE------E
Confidence 0133 6654 899999999999 9
Q ss_pred CCCCCCCCCCChhhHHHHHhhhccccccceecccc-ccCCCCchhhhHhhhccchhhhhhhhhhhhhccCCccccCCCCc
Q psy5309 564 SAPFPPKCRVPKAKLDIMRREFQYWYPVDLRCSGK-VSTKLPWDEQWLIESLSDSTIYMAYYTVAHLLQGGTFRGENGNA 642 (1618)
Q Consensus 564 ~~~~~~~~~~p~~~~~~~~~~f~~wyp~D~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 642 (1618)
+ +|+|+ ++||.++.+ |+++++++++| ||+
T Consensus 186 ~--------aPaHg------------~dDy~~~~d~Lk~k~~~~~Ky------------------------------gi~ 215 (311)
T 3pz6_A 186 S--------VPSDA------------PDDYACYKDILENRNGIAEKY------------------------------GVD 215 (311)
T ss_dssp E--------CTTTC------------HHHHHHHHHHHTTGGGHHHHT------------------------------TCC
T ss_pred e--------CCCCC------------HHHHHHHHHHhhccHHHHHHc------------------------------CCc
Confidence 9 99999 999999999 99999999999 664
Q ss_pred ccccceeeeecc-CCCCccccccCCCCCchHHHHHHHhccCCcccHHHHHHHHHHHHhhcccceeeeecccCCcchHHHH
Q psy5309 643 LNINCVIVFQVL-PYDPVPIIQVPEYGNLCAVTVYEKLKIQSQNDKDKLQEAKELVYLKGFYDGIMLVGEFKGKKVQEVK 721 (1618)
Q Consensus 643 ~~~~~~~~~~~~-~~~~~~~i~~~~~g~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~G~~~~~~~~G~~v~~a~ 721 (1618)
. ++|. +++++|||++|+||+++|+++|++++|+||+|.++|++|++.+|++||++|+|..|+|+|++|.+||
T Consensus 216 ~-------e~v~~~~e~ipvI~~~g~G~~~A~~~ve~~~I~sq~D~~kLeeA~~~~Y~~ef~~Gvm~~g~~~G~~V~eAk 288 (311)
T 3pz6_A 216 V-------GLMLEPYSPLPIIEIPDIGTLSAVRLCEESNVSSLHDRAKLTQIKEICYTKGFYTGIMKMGPFAGQSVKDCK 288 (311)
T ss_dssp H-------HHHTTTSCCCCCEEBTTTBSSHHHHHHHHTTC----CHHHHHHHHHHHHHHHHHHCEECSSTTTTSBHHHHH
T ss_pred h-------HHhccCCCeEEEEecCCCCCccHHHHHHHhCCCCcchHHHHHHHHHHHHhccCCCCEEeeeccCCeEHHHHH
Confidence 3 3676 7899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhCCcccCCCcccceeeeccccc
Q psy5309 722 KLLQKKIDIIGVALKAPVTSHSVIYTLPMLS 752 (1618)
Q Consensus 722 ~~i~~~L~~~g~~~~~~~~~~~~~~~~~~~~ 752 (1618)
++|+++|+++| .+..|++|+++
T Consensus 289 ~~i~~~L~~~g---------~a~~yyEpe~~ 310 (311)
T 3pz6_A 289 QSCRDLLVQNN---------QCIVYSEPESE 310 (311)
T ss_dssp HHHHHHHHHTT---------CEEEEECC---
T ss_pred HHHHHHHHHCC---------CceEEcccccc
Confidence 99999999999 78999999865
No 20
>3tqo_A Cysteinyl-tRNA synthetase; protein synthesis, ligase; 2.30A {Coxiella burnetii}
Probab=100.00 E-value=1.9e-33 Score=343.17 Aligned_cols=170 Identities=20% Similarity=0.211 Sum_probs=137.0
Q ss_pred CCCCccccCCCccchhhhHHHHhhhh--hhhhhhcccccccccchhhhhhhhhccCCCCCCcCcEEEEccceeeCCccce
Q psy5309 973 EMWPRGIRANGHLLLNSAKDLIQNHL--TFFIYKLFSDLIQNHLTFFIYIHTAIWGDEPEMWPRGIRANGHLLLNSAKMS 1050 (1618)
Q Consensus 973 ~~wp~~lr~~g~~~~~e~~~~i~~~~--~~~i~~~~~~~~~~h~~~~i~~~~~~~p~~~~~~pk~v~~hG~vl~~G~KMS 1050 (1618)
+||+.+ ||+||++|.. ++..+| .++||.+|.|++||||+|++++++++++. ++++.++++|++..+|+|||
T Consensus 199 spwG~G-rPGWHiEcsa---m~~~~lG~~~dih~gG~Dl~FpHheneiaqs~a~~g~---p~~~~w~H~g~v~~~G~KMS 271 (462)
T 3tqo_A 199 SPWGEG-RPGWHIECSA---MSSSILGQPFDIHGGGLDLKFPHHENEIAQSEAGEEK---PFVKLWMHAGLLEINKEKMS 271 (462)
T ss_dssp CTTCSE-EECHHHHHHH---HHHHHHCSSEEEEEEEGGGTTTHHHHHHHHHHHHHSS---CCEEEEEEECCEEETTEECC
T ss_pred CCCCCC-CCCCceehHH---HHHHhcCCCeEEEccccccccHHHHhHHHHHHHHcCC---CcceEEEEccEEecCCcCcc
Confidence 567766 9999999943 345566 79999999999999999999999998874 46777888899999999999
Q ss_pred eccCcccChHHHHhhcCccceEEeecccCcccccccccHHHHHHH---HhhHHHHHHHHHHHHHhcccCCCCCCCCcchH
Q psy5309 1051 KSEGNFLTLTEAVKKFSADGMRLCLADSGDSVEDANFVESMADAG---ILRLYTFIEWVKEILATQSTLRTGSQDSFNDK 1127 (1618)
Q Consensus 1051 KS~GNvV~p~eii~~yGaDalRl~l~~~~~~~~D~~fs~~~~~~~---~~kl~N~~~~l~~~l~~~~~~~~~~~~~~~D~ 1127 (1618)
||+||+|+|.+++++||+|++|||++++ ++.++++|+++.++.+ +++++|+++++.. . . .
T Consensus 272 KSlGN~i~~~dll~~~g~dalR~~lls~-~yr~~l~fs~~~l~~a~~~l~rl~~~~~~~~~-------~---~----~-- 334 (462)
T 3tqo_A 272 KSLGNIISIREALKESDVEVLRYFLLSG-HYRNPLSYSKENLENGRLALERFYLALRGLPV-------V---N----H-- 334 (462)
T ss_dssp TTTTCCCBHHHHHHHSCHHHHHHHHHHS-CTTSCEEECHHHHHHHHHHHHHHHHHHTTCCC-------------------
T ss_pred ccCCCcccHHHHHhhcChHHhhhhhccC-CCCCCcCcCHHHHHHHHHHHHHHHHHHHHhhh-------c---c----c--
Confidence 9999999999999999999999999976 8999999999987654 4455554433210 0 0 0
Q ss_pred HHHHHHHHHHHHHHHHHh-hccHHHHHHHHHHHHHHHHHHHHHH
Q psy5309 1128 VFLSEMNLKIKETEDHYT-KMLFKEALRTGFFELQAARDKYREL 1170 (1618)
Q Consensus 1128 ~~l~~l~~~i~~v~~~~e-~~~f~~al~~~~~~l~~~~n~Yi~~ 1170 (1618)
..+..+..++.++|+ +++...|+.. ++++++.+|.+++.
T Consensus 335 ---~~~~~~~~~~~~a~~dD~nt~~a~~~-l~~~~~~~n~~~~~ 374 (462)
T 3tqo_A 335 ---EKTSSYTDRFYEAMDDDFNTPIAFAL-LFEMVREINRFRDN 374 (462)
T ss_dssp ------CHHHHHHHHHHTBTCCHHHHHHH-HHHHHHHHHHHHHT
T ss_pred ---hhHHHHHHHHHHHHHhccChHHHHHH-HHHHHHHHhhhhcc
Confidence 123456778899995 9999999998 79999999988653
No 21
>3sp1_A Cysteinyl-tRNA synthetase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, LYME disease; HET: AMP; 2.55A {Borrelia burgdorferi}
Probab=100.00 E-value=1.3e-33 Score=345.50 Aligned_cols=176 Identities=19% Similarity=0.153 Sum_probs=123.4
Q ss_pred CCCCccccCCCccchhhhHHHHhhhh--hhhhhhcccccccccchhhhhhhhhccCCCCCCcCcEEEEccceeeCCccce
Q psy5309 973 EMWPRGIRANGHLLLNSAKDLIQNHL--TFFIYKLFSDLIQNHLTFFIYIHTAIWGDEPEMWPRGIRANGHLLLNSAKMS 1050 (1618)
Q Consensus 973 ~~wp~~lr~~g~~~~~e~~~~i~~~~--~~~i~~~~~~~~~~h~~~~i~~~~~~~p~~~~~~pk~v~~hG~vl~~G~KMS 1050 (1618)
++|+.+ ||+||++|.. ++..++ .+|||.+|.|++||||+|+++++.++++. ++.+.++++|||+.+|+|||
T Consensus 229 spwG~G-rPGWhiEcsa---m~~~~lg~~~DIH~gG~DLifpHheneiAqs~a~~g~---~~~~~w~H~g~v~~~G~KMS 301 (501)
T 3sp1_A 229 SPWGFG-YPSWHLECAA---MNLEYFKDALDIHLGGVDHIGVHHINEIAIAECFLNK---KWCDVFVHGEFLIMDYNKMS 301 (501)
T ss_dssp CTTCSE-EECHHHHHHH---HHHHHTTTCCCEEEEEGGGTTTHHHHHHHHHHHHHTS---CCCSEEEEECCEECC-----
T ss_pred CCCCCC-CCCchHHHHH---HHHHHcCCCceEEeeccccccchHHHHHHHHHHccCC---CCCeEEEEeeeEeeCCeEcc
Confidence 678777 9999999943 455666 67999999999999999999999998863 45566666699999999999
Q ss_pred eccCcccChHHHHhh-cCccceEEeecccCcccccccccHHHHHHHHhh-------HHHHHHHHHHHHHhcccCCCCCCC
Q psy5309 1051 KSEGNFLTLTEAVKK-FSADGMRLCLADSGDSVEDANFVESMADAGILR-------LYTFIEWVKEILATQSTLRTGSQD 1122 (1618)
Q Consensus 1051 KS~GNvV~p~eii~~-yGaDalRl~l~~~~~~~~D~~fs~~~~~~~~~k-------l~N~~~~l~~~l~~~~~~~~~~~~ 1122 (1618)
||+||+|+|.+++++ ||+|++|||+++. ++.+|++|+++.++.+.+. |+|+++++.......... ....
T Consensus 302 KSlGN~it~~dll~~gyg~d~lR~~lls~-~yr~~l~fs~~~l~~a~~~~~~ll~rl~~~~~~~~~~~~~~~~~-~~~~- 378 (501)
T 3sp1_A 302 KSRGNFITVKDLEDQNFSPLDFRYLCLTS-HYRNQLKFSLDNLQASKIARENLINKLSYFYESLDPVDLNTLNK-DLKN- 378 (501)
T ss_dssp -----CCCHHHHHHTTCCHHHHHHHHHTS-CTTSCEECCHHHHHHHHHHHHHHHHHHHHHHHTCCHHHHHHHHS-CTTS-
T ss_pred ccCCCcCCHHHHHhcCCCHHHHHHHHHhc-cCCCCCccCHHHHHHHHHhhHHHHHHHHHHHHHHHhhhcccccc-cccc-
Confidence 999999999999999 9999999999988 9999999999988765554 444444332221110000 0000
Q ss_pred CcchHHHHHHHHHHHHHHHHHH-hhccHHHHHHHHHHHHHHHH
Q psy5309 1123 SFNDKVFLSEMNLKIKETEDHY-TKMLFKEALRTGFFELQAAR 1164 (1618)
Q Consensus 1123 ~~~D~~~l~~l~~~i~~v~~~~-e~~~f~~al~~~~~~l~~~~ 1164 (1618)
.+ ...+..+..++.++| ++++...|+.. ++++++..
T Consensus 379 --~~---~~~~~~~~~~f~~am~dDlnt~~al~~-l~~~~~~~ 415 (501)
T 3sp1_A 379 --FG---FSVEKEYYDSFVEKISFDLNVAQGLAL-LWEIIKSD 415 (501)
T ss_dssp --CS---SHHHHHHHHHHHHHHHBTSCHHHHHHH-HHHHHHCS
T ss_pred --hh---hhhHHHHHHHHHHHHHhccCcHHHHHH-HHHHHHHh
Confidence 00 123456777889999 59999999998 67777644
No 22
>1wkb_A Leucyl-tRNA synthetase; leucine, aminoacyl-tRNA, editing, amino acid, aminoacylation, trnaLeu, structural genomics; 2.05A {Pyrococcus horikoshii}
Probab=99.97 E-value=1.8e-32 Score=363.47 Aligned_cols=461 Identities=26% Similarity=0.440 Sum_probs=288.5
Q ss_pred CCceeeccccCCCCCcccCcccchhHHhHHHhhhhccccccC-CCCCCeEEeCCCCC-CCCcchhhhhchhhhhHHHHHH
Q psy5309 43 DKFFTTFPFPYMNGRLHLGHTFSLSKFREKIYEETVGDAVRS-SPDDKFFTTFPFPY-MNGRLHLGHTFSLSKCEFSVRF 120 (1618)
Q Consensus 43 ~k~~~~~~~py~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~f~v~~ppP~-~nG~LHiGHa~~~~~~D~~aR~ 120 (1618)
+||+++.|.||+||.+||||.+++ .++|+.+| .++.+|.|+++|.+ .+|.++-+-|.....+|
T Consensus 34 ~~~~i~~~~Py~nG~lHiGH~~~~----------~~~D~i~R~~rm~G~~V~~~~G~D~~G~pie~~a~~~~~~~----- 98 (810)
T 1wkb_A 34 KKFYITVAFPYLSGHLHVGHARTY----------TIPDVIARFKRMQGYNVLFPMAWHITGSPIVGIAERIKNRD----- 98 (810)
T ss_dssp GEEEEEECCCBTTSCCBHHHHHHH----------HHHHHHHHHHHHHTCEEECCCCBBCCBSHHHHHHHHHHTTC-----
T ss_pred CcEEEEeCCCCCCCCCccccchhH----------HHHHHHHHHHHcCCCccCcCCccCCCCChHHHHHHHhcccC-----
Confidence 379999999999999999998887 44555555 34788999998877 67777654332211100
Q ss_pred HHHcCCcccccccccCCChhhHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCCCCCchhcccccCcchHHHHHhhhhHHH
Q psy5309 121 NRLKGKRVLFPFGFHCTGMPIKACADKLKREMESFGFPPQFPSEDTEPQTDKDDDDPVIKDKSKGKKSKAVAKAGSAKYQ 200 (1618)
Q Consensus 121 ~rm~G~~V~~~~G~d~~G~pIe~~a~k~~~~~~~~gi~~~~~e~~~~~~~~~~~~~~~~~~~~~g~~~~~~ak~~~~~~~ 200 (1618)
-+..... .+.+|++. ..+ -++....+.+...... +
T Consensus 99 ------------------~~~~~~~------~~~~g~~~----------------~~~----~~~~~~~~~~~~~~~~-~ 133 (810)
T 1wkb_A 99 ------------------PKTIWIY------RDVYKVPE----------------EIL----WTFEDPINIVKYFMKA-A 133 (810)
T ss_dssp ------------------HHHHHHH------HHTSCCCH----------------HHH----HGGGSHHHHHHHHHHH-H
T ss_pred ------------------chHHHHH------HHHhCCCH----------------HHH----HHHHHHHHHHHHHHHH-H
Confidence 0111000 01123220 000 0112334455554443 3
Q ss_pred HHHHHhcCCCHHHHHHHhhhh--hHHhhchhHHHHHHHHcCCccc------ccCceeecCCChhhhHHHHHHHHHHHhcC
Q psy5309 201 WQIMQSLGLEDDEIRKFADAS--HWLDHFPPLAVQDLRSIGIHVD------WRRTFITTDSNPFFDSFVRWQFMRLRDRH 272 (1618)
Q Consensus 201 ~~~~~~~g~~~~e~~~f~~~~--~~~~~~~~~~~~~l~~lGi~~D------w~~~~~T~d~~p~y~~~v~~~f~~L~~kG 272 (1618)
.+.++++|++.||.+.+.+.. +....+..+++.+|.+-|+.+- |...-.|.-.|-+. +.|
T Consensus 134 ~~~~~~lgi~~Dw~~~~~T~d~~~~~~~~v~~~f~~L~~~Gliy~~~~~v~~~~~~~t~La~~ev------------~~~ 201 (810)
T 1wkb_A 134 KETFIRAGFSVDWSREFYTTSLFPPFSKFIEWQFWKLKEKGYIVKGAHRVRWDPVVGTPLGDHDL------------MEG 201 (810)
T ss_dssp HHHHHHTTCCCCGGGCCBCSTTSHHHHHHHHHHHHHHHHTTCEEEEEEEEEEETTTTEECCTTCC------------SBC
T ss_pred HHHHHHhCeEEecCCceEecCCchHHHHHHHHHHHHHHHCCCEEECCeeeeccCCcCCCccHHHH------------hcC
Confidence 567899999999888877666 7788899999999999997654 44333333222100 001
Q ss_pred c-cc-----------c----CceeEEEecCCCCcccchhhccCCCCCCe-eEEEEEEeeccCCccccccCCCCCcEEEEe
Q psy5309 273 K-IK-----------Y----GKRYTVFSPRDNQPCMDHDRASGEGVGPQ-EYTLIKMRLVKPYPAKLCCLDSKPVFLVAA 335 (1618)
Q Consensus 273 ~-iy-----------~----g~~~v~w~p~~~t~lsd~Ev~~~~~~~~~-~y~~~~~~~~~~~~~~~~~~~~~~~~l~i~ 335 (1618)
. +. . +...+.|..+-.|-.++-=+.- .|. .|+.++.. + ...+..++++
T Consensus 202 ~~~~~~~~~~v~f~~~~~~~~~~l~v~TTrP~Tl~g~~av~v----~P~~~y~~~~~~--~---------~~~~~~~i~~ 266 (810)
T 1wkb_A 202 EDVPILDYIIIKFELRENGEVIYLPAATLRPETVYGVTNMWV----NPNATYVKAKVR--R---------KDKEETWIVS 266 (810)
T ss_dssp SSCCEEEEEEEEEECCSSCSCCEEEEEESCGGGGGGCCEEEE----CTTSCEEEEEEE--E---------TTEEEEEEEE
T ss_pred CCCccceeEEEEEEccCCCCceEEEEEcCCchHhhhhhEEEE----CCCCcEEEEEec--C---------CCcceeeeeH
Confidence 0 00 0 1235556666555554422211 111 12222110 0 0000111121
Q ss_pred ecCccccccC-ceEEe----CC-CC-CceeecccCCccEEEEec-ccccCccCCCeeEEecCCCCeeEEEcC--------
Q psy5309 336 TLRPETMYGQ-TNAWV----RP-DM-AYIALSCLDSKPVFLVAA-TLRPETMYGQTNAWVRPDMAYIAFTTA-------- 399 (1618)
Q Consensus 336 TTrPeTl~g~-~avaV----~P-~~-~Y~~~~~~~~~~~~iv~~-~~~~~t~~Gt~~v~v~P~~~y~~~~~~-------- 399 (1618)
..+-+.+... ..+-+ .. +. .-...+|+.+++++|+++ .|.++ +|||+|+++|+|+..||...
T Consensus 267 ~~~~~~~~~~~~~~~~~~~~~G~~l~g~~~~~P~~~~~ipi~~~~~V~~~--~GTG~V~~~Pah~~~D~~~~~~~~~~~~ 344 (810)
T 1wkb_A 267 KEAAYKLSFQDREIEVIEEFKGEKLIGKYVRNPVSGDEVIILPAEFVDPD--NATGVVMSVPAHAPFDHVALEDLKRETE 344 (810)
T ss_dssp HHHHHHHTTSSCEEEEEEECTTTTTTTCEEECSSSCCEEEEEECTTSCTT--STTSCEEECTTTCHHHHHHHCCCSCCSC
T ss_pred HHHHHHHHhhhcceEEEEEEEchhhcCCEEECCCCCCeeEEEecCcccCC--CCceeEEeCCCCCHHHHHHHHhhccchh
Confidence 1111111000 00000 00 00 011234667888888776 47777 99999999999998887521
Q ss_pred ----CC----------cEEEeccc---------------------------------------cc-cccccCCCchhhhH
Q psy5309 400 ----TG----------EVFVCTER---------------------------------------SA-RNMAYQGFTEVEGK 425 (1618)
Q Consensus 400 ----~~----------~~~i~~~~---------------------------------------~~-~~~~~~g~~~~~a~ 425 (1618)
.| .+.+++.+ +. ....|+|+.+++|+
T Consensus 345 ~~~k~~l~~~~~~~l~~~~vi~~~~~~~~~~~~~~~~~~i~~~~d~~~~~~~~~~~~~~~~~~G~~~~g~~~G~~v~~a~ 424 (810)
T 1wkb_A 345 ILEKYDIDPRIVENITYISLIKLEGYGDFPAVEEVNKLGIKSQKDKEKLEQATKTIYKAEYHKGIFKVPPYEGKPVQEVK 424 (810)
T ss_dssp CCTTCSCCCCCC----------------CCTTCCSGGGTSCCCTTCSCTHHHHHHHHHHHHHSCEECSGGGTTEEHHHHH
T ss_pred HHHHcCCChhhcccccceeeeccCCccccchhhhhhhccCCCcchhhhhhhhhhhhhhccccCceEeccCcCCeEHHHhH
Confidence 01 11111100 00 02358999999999
Q ss_pred HHHhhhhccCc-------------ceecCCEEEec-cccceeeccCCchHHHHHHHHhccccccchhhhhhHhhhhhccc
Q psy5309 426 INVLLRLTGQV-------------CIRSGDECVVA-LCDQWYLDYGEPTWKAAAEQCLANMNTYHDEVRRNFGASLNWLH 491 (1618)
Q Consensus 426 ~~ii~~l~~~~-------------l~r~g~~i~~~-l~~QWfl~~~~~~~k~~~~~~~~~~~~~p~~~~~~~~~~~~~l~ 491 (1618)
..|++.|+..+ |+|||++++++ +++|||+++++++++..+.+++++++++|+..++.+.+|++|++
T Consensus 425 ~~i~~~L~~~g~~~~~~~~~~~~~~~r~g~~vi~~~~~~qwF~~~~~~~~~~~~l~~~~~~~~~P~~~~~~~~~~l~~l~ 504 (810)
T 1wkb_A 425 EAIAKEMLEKGIAEIMYEFAEKNVISRFGNRAVIKIIHDQWFIDYGNPEWKEKARKALERMKILPETRRAQFEAIIDWLD 504 (810)
T ss_dssp HHHHHHHHTTTSEEEEEEESSSCCBCTTSCBCEEEEEEEEEEECTTCHHHHHHHHHHHHTSEEESGGGHHHHHHHHHHCC
T ss_pred HHHHHHHHhCCCeeeEEecCCCCcCCCCCCEEEEEecCCceeEecChHHHHHHHHhhhcccEEECcchhchHHHHhhccc
Confidence 99999997643 56999998888 79999999998788889999999999999999999999999999
Q ss_pred cceeeccccCCccCCCCCcchhhccCCCcccceEEEeeccccCcccccCCCCcccccccCCCcceeeeeeccC------C
Q psy5309 492 EYACSRTYGLGTKLPWDEQWLIESLSDSTIYMAYYTVAHLLQGGTFRGENGNALNIKAEDLTPEVWDYVFFKS------A 565 (1618)
Q Consensus 492 dWciSRq~~WG~~iP~~~~w~i~~~~~~~i~~a~~~~~~~~~~~~~~g~~~~~~~v~~~~gtg~v~~~~~~~~------~ 565 (1618)
|||||||++||+||||++.|.+++++|+++|++++.+++.+.. +.+. ..+++++.++.+|||+|+.. .
T Consensus 505 Dw~ISRq~~WG~piP~d~~~~~~~~~~~~iYv~~~~~~~~~~~--~~~~----~~~~~~~l~~~~~d~~~~~~~~~g~~~ 578 (810)
T 1wkb_A 505 KKACARKIGLGTPLPWDPEWVIESLSDSTIYMAYYTISRHINK--LRQE----GKLDPEKLTPEFFDYIFLEEFSEDKEK 578 (810)
T ss_dssp CEECEESSSBSCEETTEEEEEECTTTSSSSHHHHHHHHHHHHH--HHHT----TCCCGGGCCHHHHHHHHHSCCCHHHHH
T ss_pred CccccccCCCCCcCCcCcceecccCCCCceeeehhhhHHHHHH--hHhh----cCCCHHHcCccceeeeeccccccCccc
Confidence 9999999999999999999999999999999988887764420 0000 12456677889999998641 0
Q ss_pred CCCCCCCCChhhHHHHHhhhccccccceecccc
Q psy5309 566 PFPPKCRVPKAKLDIMRREFQYWYPVDLRCSGK 598 (1618)
Q Consensus 566 ~~~~~~~~p~~~~~~~~~~f~~wyp~D~~~~~~ 598 (1618)
++.+.+|+|...+.+++++|++|||.|+.+.|.
T Consensus 579 ~~~~~sg~~~~~~~~~~~~~~~~~p~Di~~~G~ 611 (810)
T 1wkb_A 579 ELEKKTGIPAEIIHEMKEEFEYWYPLDWRCSGK 611 (810)
T ss_dssp HHHHHHSCCHHHHHHHHHHHHHHCSCSEEEEEG
T ss_pred cchhhhCCCHHHHHhhHHHHHhhCCceEEeecc
Confidence 111234677777778889999999999999886
No 23
>1ile_A Ilers, isoleucyl-tRNA synthetase; aminoacyl-tRNA synthetase, riken structural genomics/proteom initiative, RSGI, structural genomics; 2.50A {Thermus thermophilus} SCOP: a.27.1.1 b.51.1.1 c.26.1.1 PDB: 1jzq_A* 1jzs_A*
Probab=99.97 E-value=1.1e-31 Score=355.45 Aligned_cols=254 Identities=20% Similarity=0.215 Sum_probs=192.9
Q ss_pred hCCCccccccchhhhhhhcccCCCCCCcccceeccccccc-cccccccccCCcCCHHHHHHhcCcceeeeehhccCCCCc
Q psy5309 1208 LGKDLIQNHLTFFIYIHTAIWGDEPEMWPRGIRANGHLLL-NSAKMSKSEGNFLTLTEAVKKFSADGMRLCLADSGDSVE 1286 (1618)
Q Consensus 1208 Lgkd~~svh~~~f~s~~~~~~p~~~~~~p~~v~~hGfvld-~G~KMSKSlGNvI~P~~ii~~yGaD~lRl~l~~~~~~~~ 1286 (1618)
.|+|+ |++|+.+++..+....+..||+.+.+|||+++ +|+|||||+||||+|.+++++||||++||||++.+++.+
T Consensus 550 ~G~D~---~r~w~~~~~~~~~~~~~~~pf~~v~~hg~vl~~~G~KMSKS~GNvV~p~dli~~yGaDalR~~ll~~~~~~~ 626 (821)
T 1ile_A 550 EGIDQ---TRGWFNSLHQLGVMLFGSIAFKNVICHGLILDEKGQKMSKSKGNVVDPWDIIRKFGADALRWYIYVSAPPEA 626 (821)
T ss_dssp EEGGG---GGTHHHHHHHHHHHHHSSCSBSEEEEECCEECTTSSCCCTTTTCCCCHHHHHTTTCHHHHHHHHHHHSCSSS
T ss_pred chhhh---hccHHHHHHHHHHHhcCCCCcceEEEEeeEECCCCCCCCccCCCCCCHHHHHHHhCHHHHHHHHHhCCCCCC
Confidence 36675 67888877665543335568999999999999 999999999999999999999999999999999988999
Q ss_pred CcccCHHHHHHH-HHHhhhhhhhhhcccCCCCcchhhHHHHHhhhhhhhhhhHHHHHHHHhhcccc-c-CCCCCCCcchH
Q psy5309 1287 DANFVESMADAA-VKKFSADGMRLCLADSGDSVEDANFVESMADAGILRLYTFIEWVKEILATQST-L-RTGSQDSFNDK 1363 (1618)
Q Consensus 1287 D~~fs~~~l~~~-~~~~n~~~~~~~l~n~gnl~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~~~~~~D~ 1363 (1618)
|++||++.+++. .+.+|.. +|.++|+..+. .+++..+ . .....+...|+
T Consensus 627 d~~fs~~~l~~~~~~~~~kl------------~N~~~~~~~~~----------------~~~~~~~~~~~~~~~~~~~d~ 678 (821)
T 1ile_A 627 DRRFGPNLVRETVRDYFLTL------------WNVYSFFVTYA----------------NLDRPDLKNPPPPEKRPEMDR 678 (821)
T ss_dssp CEECCHHHHHHHHHHTHHHH------------HHHHHHHHHHH----------------HHHCCCTTSCCCSTTSCHHHH
T ss_pred CcEecHHHHHHHHHHHHHHH------------HHHHHHHHHhh----------------ccccCCcccccccccCCHHHH
Confidence 999999988773 4333321 11123322110 1111111 0 00123567899
Q ss_pred HHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHH--HHHHHHHHhhhhcccchhHHHHHHHHHHHHhhcCcchhhHHHHH
Q psy5309 1364 VFLSEMNLKIKETEDHYTKMLFKEALRTGFFELQ--AARDKYRELTAAEGGMHRTLVLRFVEVQALLLCPVCPHVAEHVE 1441 (1618)
Q Consensus 1364 ~il~~l~~l~~~v~~~~e~~~f~~a~~~i~~~f~--~~~n~Y~~~~~~~~~~~~~~~l~~~~~~a~ll~P~~P~~a~~i~ 1441 (1618)
|++++++.+++++.++|++|+|++|++.++ +|+ .++|+|++.++
T Consensus 679 ~ll~~l~~~~~~v~~a~e~~~f~~A~~~l~-~f~~~~~~n~Yl~~~k--------------------------------- 724 (821)
T 1ile_A 679 WLLARMQDLIQRVTEALEAYDPTTSARALR-DFVVEDLSQWYVRRNR--------------------------------- 724 (821)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCHHHHHHHHH-HHHHHHSSTTTHHHHH---------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHccCHHHHHHHHH-HHHHHHHHHHHHHHhh---------------------------------
Confidence 999999999999999999999999999985 998 57888886654
Q ss_pred HHhcccccchhhhhhhhhhhhhhhhhhhhhhhhhHHHhhhhhhchHHHHHHHHHHHHHHHhccchhhHHHHHHHHcCC--
Q psy5309 1442 MNLKIKETEDHYTKMLFKEALRTGFFELQAARDKYRELTAAEGGMHRTLVLRFVEVQALLLCPVCPHVAEHVYQLLGK-- 1519 (1618)
Q Consensus 1442 ~~L~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~llaPi~P~~aEeiw~~l~~-- 1519 (1618)
+|+|....+.+|+ .++++|.++|+.+++|||||+||+|||+|+.|+.
T Consensus 725 ----------------------~~~~~~~~~~~r~---------~~~~~l~~~l~~~~~lLaP~~P~~aeelw~~L~~~~ 773 (821)
T 1ile_A 725 ----------------------RRFWKNEDALDRE---------AAYATLYEALVLVATLAAPFTPFLAEVLWQNLVRSV 773 (821)
T ss_dssp ----------------------HHHHTCTTTSSTT---------HHHHHHHHHHHHHHHHHTTTSTTHHHHHHHHHTTTT
T ss_pred ----------------------hhcccCCCcHHHH---------HHHHHHHHHHHHHHHHcCCccchHHHHHHHhccccc
Confidence 4444332211221 3566788999999999999999999999999874
Q ss_pred ---CC-ceEeccCCCCCC--CCHHHHHHHHHHHHHHHHHHHHHH
Q psy5309 1520 ---KG-SIVKARWPEGGP--IDDILVRSSSYLMEAAHAFRLQVK 1557 (1618)
Q Consensus 1520 ---~~-sv~~~~~p~~~~--~~~~l~~~~~~~~~~i~~~R~~~~ 1557 (1618)
.+ ||+.+.||+.++ .|+.++++++.+++++.++|+.++
T Consensus 774 ~~~~~~sv~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~r~~r~ 817 (821)
T 1ile_A 774 RLEAKESVHLADWPEADPALADEALVAQMRAVLKVVDLARAARA 817 (821)
T ss_dssp STTSCSSGGGSCCCCCCTTTCCHHHHHHHHHHHHHHHHHTTCTT
T ss_pred cCCCCCceEeecCCCCCcccCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 25 999999999874 589999999999997777776543
No 24
>2wfd_A Leucyl-tRNA synthetase, cytoplasmic; aminoacyl-tRNA synthetase, phosphoprotein, editing domain, nucleotide-binding, hydrolysis of MIS-charged trnas; 3.25A {Homo sapiens}
Probab=99.97 E-value=5.4e-31 Score=299.50 Aligned_cols=246 Identities=48% Similarity=0.806 Sum_probs=185.9
Q ss_pred CCCCeeEEEEEEeeccCCccccccCCCCCcEEEEeecCccccccCceEEeCCCCCceeecccCCccEEEEecccccCccC
Q psy5309 301 GVGPQEYTLIKMRLVKPYPAKLCCLDSKPVFLVAATLRPETMYGQTNAWVRPDMAYIALSCLDSKPVFLVAATLRPETMY 380 (1618)
Q Consensus 301 ~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~l~i~TTrPeTl~g~~avaV~P~~~Y~~~~~~~~~~~~iv~~~~~~~t~~ 380 (1618)
+++|++|+.++|++.++++.....+.+.+.+|+||||||||||||+||||||++.|+.+... +++.+|++..
T Consensus 1 ~~~~~e~~~ikf~v~~~~~~~~~~~~~~~~~l~v~TTrP~TL~g~talav~Pe~~yv~~~~~-~~~~~i~a~~------- 72 (252)
T 2wfd_A 1 AMGPQEYTLLKLKVLEPYPSKLSGLKGKNIFLVAATLRPETMFGQTNCWVRPDMKYIGFETV-NGDIFICTQK------- 72 (252)
T ss_dssp CCCCCEEEEEEEEEESSCCGGGGGGTTSCEEEEEEESCGGGGGGCCEEEECSSSCCEEEECT-TSCEEEECHH-------
T ss_pred CCCceEEEEEEEEccCcchhhhhhccCCCCEEEEEECChHHHhhhheEEECCCCcEEEEEec-CCcEEEEhhh-------
Confidence 36799999999998877665555565667899999999999999999999999999987531 2234444332
Q ss_pred CCeeEEecCCCCeeEEEcCCCcEEEeccccccccccCCCchhhhHHHHhhhhccCcceecCCEEEeccccceeeccCCch
Q psy5309 381 GQTNAWVRPDMAYIAFTTATGEVFVCTERSARNMAYQGFTEVEGKINVLLRLTGQVCIRSGDECVVALCDQWYLDYGEPT 460 (1618)
Q Consensus 381 Gt~~v~v~P~~~y~~~~~~~~~~~i~~~~~~~~~~~~g~~~~~a~~~ii~~l~~~~l~r~g~~i~~~l~~QWfl~~~~~~ 460 (1618)
...++.|++........+++.+++|..+. |..+.++++.+
T Consensus 73 -----------------------------~~~~~~~~~~~~~~~~~~~~~~~~G~~l~--G~~~~~Pl~~~--------- 112 (252)
T 2wfd_A 73 -----------------------------AARNMSYQGFTKDNGVVPVVKELMGEEIL--GASLSAPLTSY--------- 112 (252)
T ss_dssp -----------------------------HHHHHHTTTSSSSTTCCCEEEECCHHHHT--TCEEECSSCSS---------
T ss_pred -----------------------------hHHHHHHHHhhccCcccEEEEEEEccccc--CCEEEcCCCCC---------
Confidence 21122222211000011223333333333 55555444310
Q ss_pred HHHHHHHHhccccccchhhhhhHhhhhhccccceeeccccCCccCCCCCcchhhccCCCcccceEEEeeccccCcccccC
Q psy5309 461 WKAAAEQCLANMNTYHDEVRRNFGASLNWLHEYACSRTYGLGTKLPWDEQWLIESLSDSTIYMAYYTVAHLLQGGTFRGE 540 (1618)
Q Consensus 461 ~k~~~~~~~~~~~~~p~~~~~~~~~~~~~l~dWciSRq~~WG~~iP~~~~w~i~~~~~~~i~~a~~~~~~~~~~~~~~g~ 540 (1618)
..+| ++++
T Consensus 113 ------------------------------------------~~ip--------------------V~~a---------- 120 (252)
T 2wfd_A 113 ------------------------------------------KVIY--------------------VLPM---------- 120 (252)
T ss_dssp ------------------------------------------SCEE--------------------EEEC----------
T ss_pred ------------------------------------------ceeE--------------------EEEe----------
Confidence 0134 5554
Q ss_pred CCCcccccccCCCcceeeeeeccCCCCCCCCCCChhhHHHHHhhhccccccceeccccccCCCCchhhhHhhhccchhhh
Q psy5309 541 NGNALNIKAEDLTPEVWDYVFFKSAPFPPKCRVPKAKLDIMRREFQYWYPVDLRCSGKVSTKLPWDEQWLIESLSDSTIY 620 (1618)
Q Consensus 541 ~~~~~~v~~~~gtg~v~~~~~~~~~~~~~~~~~p~~~~~~~~~~f~~wyp~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 620 (1618)
++|+++.|||+| |+ +|+|+ ++||.++.+|.++++|+++|
T Consensus 121 ----dyV~~~~GTG~V------~~--------vPaHd------------~~D~~~~~~l~~~~~fa~ky----------- 159 (252)
T 2wfd_A 121 ----LTIKEDKGTGVV------TS--------VPSDS------------PDDIAALRDLKKKQALRAKY----------- 159 (252)
T ss_dssp ----SCCCSSSSCSSE------EE--------CTTTC------------HHHHHHHHHHHHCSHHHHTT-----------
T ss_pred ----CcccCCCCCCeE------EE--------cCCCC------------HHHHHHHhhhccchhHHHHc-----------
Confidence 899999999999 99 99999 99999998887777788888
Q ss_pred hhhhhhhhhccCCccccCCCCcccccceeeeeccCCCCccccccCCCCCchHHHHHHHhccCCcccHHHHHHHHHHHHhh
Q psy5309 621 MAYYTVAHLLQGGTFRGENGNALNINCVIVFQVLPYDPVPIIQVPEYGNLCAVTVYEKLKIQSQNDKDKLQEAKELVYLK 700 (1618)
Q Consensus 621 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~ 700 (1618)
||+. +++.++++++||+++++|++++...+++++|.|++|.++|++|++.+|..
T Consensus 160 -------------------gL~~-------~~~~~~~~~~vI~~~~~g~~~~~~~~~~~~i~~~~d~~~l~~~~~~~y~~ 213 (252)
T 2wfd_A 160 -------------------GIRD-------DMVLPFEPVPVIEIPGFGNLSAVTICDELKIQSQNDREKLAEAKEKIYLK 213 (252)
T ss_dssp -------------------TCCG-------GGTTTCCCCCCEEBTTTBSSHHHHHHHHTTCCSTTCHHHHHHHHHHHHHH
T ss_pred -------------------CCCc-------hhccccCceeEEecCcccccchhhhhhhccccCcchhhhhhhhhhhhccc
Confidence 5532 23446778999999999999999999999999999999999999999999
Q ss_pred cccceeeeecccCCcchHHHHHHHHHHHHHhCC
Q psy5309 701 GFYDGIMLVGEFKGKKVQEVKKLLQKKIDIIGV 733 (1618)
Q Consensus 701 ~~~~G~~~~~~~~G~~v~~a~~~i~~~L~~~g~ 733 (1618)
+|++|+|+.|+|+|+++++||++|+++|+++|+
T Consensus 214 ~~~~G~~~~~~~~Gl~v~eA~~~Ii~~L~~~g~ 246 (252)
T 2wfd_A 214 GFYEGIMLVDGFKGQKVQDVKKTIQKKMIDAGD 246 (252)
T ss_dssp HHHHCEECSTTSTTCBHHHHHHHHHHHHHHTTS
T ss_pred cccCceEeeeccCCeEHHHHHHHHHHHHHHCCC
Confidence 999999998899999999999999999999994
No 25
>3c8z_A Cysteinyl-tRNA synthetase; cysteine ligase, rossmann fold, Cys-SA inhibitor, zinc binding, ATP-binding, aminoacyl-tRNA synthetase; HET: 5CA 1PE EPE; 1.60A {Mycobacterium smegmatis}
Probab=99.97 E-value=1.2e-29 Score=310.89 Aligned_cols=157 Identities=18% Similarity=0.145 Sum_probs=108.4
Q ss_pred cCCCccchhhhHHHHhhhh--hhhhhhcccccccccchhhhhhhhhccCCCCCCcCcEEEEc-cceeeCCccceeccCcc
Q psy5309 980 RANGHLLLNSAKDLIQNHL--TFFIYKLFSDLIQNHLTFFIYIHTAIWGDEPEMWPRGIRAN-GHLLLNSAKMSKSEGNF 1056 (1618)
Q Consensus 980 r~~g~~~~~e~~~~i~~~~--~~~i~~~~~~~~~~h~~~~i~~~~~~~p~~~~~~pk~v~~h-G~vl~~G~KMSKS~GNv 1056 (1618)
||+||++|.. +...++ ..++|.+|.|++|+||.|.++++.++++..+ |.++++| |||+.+|+|||||+||+
T Consensus 226 ~pgWhiec~a---~~~~~~g~~~di~~~G~D~~~~H~~~~~a~~~a~~g~~~---~~~~~~h~g~v~~~G~KMSKS~GN~ 299 (414)
T 3c8z_A 226 RPGWHVECSA---IALTRIGTGLDIQGGGSDLIFPHHEYSAAHAESVTGERR---FARHYVHTGMIGWDGHKMSKSRGNL 299 (414)
T ss_dssp EECHHHHHHH---HHHHHTCSCEEEEEEEGGGTTTHHHHHHHHHHHHHCCSC---SEEEEEEECCBC-------------
T ss_pred CCCccchhHH---HHHHhcCCCceEEEeccccccHHHHHHHHHHHHhcCCCC---cCeEEEEcCEEecCCeEcccccCCc
Confidence 4556666632 223333 4566777777788999999999998865322 5667777 89999999999999999
Q ss_pred cChHHHHhh-cCccceEEeecccCcccccccccHHHHHHHHh---hHHHHHHHHHHHHHhcccCCCCCCCCcchHHHHHH
Q psy5309 1057 LTLTEAVKK-FSADGMRLCLADSGDSVEDANFVESMADAGIL---RLYTFIEWVKEILATQSTLRTGSQDSFNDKVFLSE 1132 (1618)
Q Consensus 1057 V~p~eii~~-yGaDalRl~l~~~~~~~~D~~fs~~~~~~~~~---kl~N~~~~l~~~l~~~~~~~~~~~~~~~D~~~l~~ 1132 (1618)
|+|.+++++ ||+|++|||+++ +++.+|++|+++.+.+..+ +++|+++++ . .+ .
T Consensus 300 v~~~~ll~~g~g~D~lR~~ll~-~~~~~d~~fs~~~l~~~~~~l~~l~n~~~~~-------~----~~-----------~ 356 (414)
T 3c8z_A 300 VLVSQLRAQGVDPSAIRLGLFS-GHYREDRFWSNEVLDEANARLARWRSATALP-------E----AP-----------D 356 (414)
T ss_dssp CBHHHHHHTTCCHHHHHHHHHT-SCTTSCBCCCHHHHHHHHHHHHHHHHHHTSS-------C----BS-----------C
T ss_pred CCHHHHhhccCCcchheeEEEe-cCcCCCCCcCHHHHHHHHHHHHHHHHHHHhc-------c----ch-----------h
Confidence 999999999 999999999998 6999999999998765444 444443221 0 00 1
Q ss_pred HHHHHHHHHHHH-hhccHHHHHHHHHHHHHHHHHH
Q psy5309 1133 MNLKIKETEDHY-TKMLFKEALRTGFFELQAARDK 1166 (1618)
Q Consensus 1133 l~~~i~~v~~~~-e~~~f~~al~~~~~~l~~~~n~ 1166 (1618)
++.+++++.++| ++|+|++|++. ++++++.+|.
T Consensus 357 ~~~~~~~v~~a~~d~~~~~~Al~~-i~~~~~~~n~ 390 (414)
T 3c8z_A 357 ATDVIARVRQYLADDLDTPKALAA-LDGWCTDALS 390 (414)
T ss_dssp CHHHHHHHHHHHHBTCCHHHHHHH-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHH-HHHHHHHHHh
Confidence 257788999999 89999999998 7899988887
No 26
>3u1f_A Methionyl-tRNA synthetase; aminoacyl-tRNA synthetase, AARS, metrs, parasite, protein-IN complex, rossmann-fold, translation; HET: 392; 2.20A {Trypanosoma brucei} PDB: 3u1e_A* 3u1g_A* 3u20_A* 4eg1_A 4eg3_A* 4eg6_A* 4eg8_A* 4eg5_A* 3tun_A* 3u1z_A* 4eg4_A* 4eg7_A* 4ega_A*
Probab=99.96 E-value=1.3e-29 Score=323.05 Aligned_cols=212 Identities=19% Similarity=0.211 Sum_probs=174.3
Q ss_pred HhCCCccccccchhhhhhhcccCCCCCCcccceeccccccccccccccccCCcCCHHHHHHhcCcceeeeehhccCCCCc
Q psy5309 1207 LLGKDLIQNHLTFFIYIHTAIWGDEPEMWPRGIRANGHLLLNSAKMSKSEGNFLTLTEAVKKFSADGMRLCLADSGDSVE 1286 (1618)
Q Consensus 1207 ~Lgkd~~svh~~~f~s~~~~~~p~~~~~~p~~v~~hGfvld~G~KMSKSlGNvI~P~~ii~~yGaD~lRl~l~~~~~~~~ 1286 (1618)
..|+|+..+|..+|++.+... +.++|+.+.+|||+.++|+|||||+||||+|.+++++||||+|||||++.+++++
T Consensus 283 ~~G~D~~~fh~~~~~a~l~~~----g~~~~~~v~~hg~l~~~G~KMSKSlGNvi~p~~~i~~ygaD~lR~~l~~~~~~~~ 358 (542)
T 3u1f_A 283 VIGKDILKFHAIYWPAFLLSA----GLPLPKKIVAHGWWTKDRKKISKSLGNVFDPVEKAEEFGYDALKYFLLRESGFSD 358 (542)
T ss_dssp EEEGGGHHHHHTHHHHHHHHH----TCCCCSCEEEECCCEETTBCCBTTTTBCCCHHHHHHHHCHHHHHHHHHHHCCTTS
T ss_pred EecccccccccchhHHHHHhh----cccccceeccccceecCCceeccccCCCCChhHHHhhcCchHHHHHHHhcCcccc
Confidence 459999999999999876664 4578999999999888999999999999999999999999999999999889999
Q ss_pred CcccCHHHHHHHHHHhhhhhhhhhcccCCCCcchhhHHHHHhhhhhhhhhhHHHHHHHHhhcccccCCCCCCCcchHHHH
Q psy5309 1287 DANFVESMADAAVKKFSADGMRLCLADSGDSVEDANFVESMADAGILRLYTFIEWVKEILATQSTLRTGSQDSFNDKVFL 1366 (1618)
Q Consensus 1287 D~~fs~~~l~~~~~~~n~~~~~~~l~n~gnl~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~il 1366 (1618)
|++||++.+.+ .+|+. |.|. ++|.++|+..+.. .+++ ..+....+..+|+|++
T Consensus 359 d~~fs~~~~~~---~~n~~-----l~n~--l~N~~~r~~~~~~---------------~~~~--~~~~~~~~~~~d~~il 411 (542)
T 3u1f_A 359 DGDYSDKNMIA---RLNGE-----LADT--LGNLVMRCTSAKI---------------NVNG--EWPSPAAYTEEDESLI 411 (542)
T ss_dssp CCEECHHHHHH---HHHHT-----TTTT--HHHHHHHHHCTTT---------------STTS--BCCCCCCCCHHHHHHH
T ss_pred cccccHHHHHH---HhhhH-----HHHH--HHHHHHHHHHhhh---------------cccC--CCCccchhhHHHHHHH
Confidence 99999997654 44443 2222 2222566543321 1222 2334456778899999
Q ss_pred HHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHhhhhcccc---------hhHHHHHHHHHHHHhhcCcchhhH
Q psy5309 1367 SEMNLKIKETEDHYTKMLFKEALRTGFFELQAARDKYRELTAAEGGM---------HRTLVLRFVEVQALLLCPVCPHVA 1437 (1618)
Q Consensus 1367 ~~l~~l~~~v~~~~e~~~f~~a~~~i~~~f~~~~n~Y~~~~~~~~~~---------~~~~~l~~~~~~a~ll~P~~P~~a 1437 (1618)
++++++++++.++|++|+|++|+++++ +|+..+|.|++..+||... ..++++++++.+++||+||||++|
T Consensus 412 ~~l~~~~~~~~~~~~~~~~~~a~~~i~-~~~~~~n~Y~~~~~pw~l~k~d~~~~~~~l~~~~~~l~~~~~ll~P~~P~~a 490 (542)
T 3u1f_A 412 QLIKDLPGTADHYYLIPDIQKAIIAVF-DVLRAINAYVTDMAPWKLVKTDPERLRTVLYITLEGVRVTTLLLSPILPRKS 490 (542)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHH-HHHHHHHHHHHHHCHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHTTTSHHHH
T ss_pred HHhhhhHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHhcCchhhhcCCHHHHHHHHHHHHHHHHHHHHHHHhHhHHHH
Confidence 999999999999999999999999985 9999999999999988641 226788999999999999999999
Q ss_pred HHHHHHhcccccc
Q psy5309 1438 EHVEMNLKIKETE 1450 (1618)
Q Consensus 1438 ~~i~~~L~~~~~~ 1450 (1618)
++|+++||++...
T Consensus 491 eei~~~Lg~~~~~ 503 (542)
T 3u1f_A 491 VVIFDMLGVPEVH 503 (542)
T ss_dssp HHHHHHHTCCGGG
T ss_pred HHHHHHCCCCCcc
Confidence 9999999987653
No 27
>2v0c_A Aminoacyl-tRNA synthetase; ligase, nucleotide-binding, protein biosynthesis; HET: LMS ANZ; 1.85A {Thermus thermophilus} PDB: 1h3n_A* 1obc_A* 1obh_A* 2bte_A* 2byt_A 2v0g_A*
Probab=99.95 E-value=1e-28 Score=326.34 Aligned_cols=235 Identities=19% Similarity=0.202 Sum_probs=159.7
Q ss_pred ccchhhhhhhcccCCCCCCcccceeccccccc-----------------------------------------------c
Q psy5309 1216 HLTFFIYIHTAIWGDEPEMWPRGIRANGHLLL-----------------------------------------------N 1248 (1618)
Q Consensus 1216 h~~~f~s~~~~~~p~~~~~~p~~v~~hGfvld-----------------------------------------------~ 1248 (1618)
|+.||.+++...--..+..||++|++||||++ +
T Consensus 548 y~r~~~~~l~~~g~~~~~~Pfk~l~~~G~vl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 627 (878)
T 2v0c_A 548 YSRFFTKFLHDLGMVKVEEPFQGLFTQGMVLAWTDFGPVEVEGSVVRLPEPTRIRLEIPESALSLEDVRKMGAELRPHED 627 (878)
T ss_dssp HHHHHHHHHHHTTSCSCSCSBSBEECCCCEEEEEEEEEEEEETTEEECCHHHHHHHTCSCSEEEHHHHHHTTCEEEECTT
T ss_pred HHHHHHHHHHHhhcccCCCchHhheecceEeccceeccccccccceeccccccccccccCchhhhhccccccceeeccCC
Confidence 34566654432211235688999999999997 7
Q ss_pred c-------cccccccCCcCCHHHHHHhcCcceeeeehhccCCCCcCcccCHHHHHHHHHHhhhhhhhhhcccCCCCcchh
Q psy5309 1249 S-------AKMSKSEGNFLTLTEAVKKFSADGMRLCLADSGDSVEDANFVESMADAAVKKFSADGMRLCLADSGDSVEDA 1321 (1618)
Q Consensus 1249 G-------~KMSKSlGNvI~P~~ii~~yGaD~lRl~l~~~~~~~~D~~fs~~~l~~~~~~~n~~~~~~~l~n~gnl~~~~ 1321 (1618)
| +|||||+||||+|.++|++||||++|||+++.+++++|++||++.+++..+.++..
T Consensus 628 G~~~~~~~~KMSKSkGNvVdP~diI~~yGADalRl~ll~~~~~~~D~~fs~~~v~~~~~~l~Rl---------------- 691 (878)
T 2v0c_A 628 GTLHLWKPAVMSKSKGNGVMVGPFVKEQGADIARITILFAAPPENEMVWTEEGVQGAWRFLNRI---------------- 691 (878)
T ss_dssp SSEEEEEEEECSGGGTCCCBHHHHHHHSCHHHHHHHHHHHSCTTSCEEECHHHHHHHHHHHHHH----------------
T ss_pred CCchhhhHHHhhccCCCcccHHHHHHHcCccHHHHHHhccCCCCCCceeCHHHHHHHHHHHHHH----------------
Confidence 9 99999999999999999999999999999997899999999999988866555522
Q ss_pred hHHHHHhhhhhhhhhhHHHHHHHHhhcccccCCCCCCCcchHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHH
Q psy5309 1322 NFVESMADAGILRLYTFIEWVKEILATQSTLRTGSQDSFNDKVFLSEMNLKIKETEDHYTKMLFKEALRTGFFELQAARD 1401 (1618)
Q Consensus 1322 ~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~il~~l~~l~~~v~~~~e~~~f~~a~~~i~~~f~~~~n 1401 (1618)
++++.+....++..........+...|+|+++++++++++++++|++|+|++|+++++ +|++..|
T Consensus 692 --------------~n~~~~~~~~~~~~~~~~~~~~l~~~D~~ll~~l~~~i~~v~~~~e~~~f~~Ai~~l~-~f~~~l~ 756 (878)
T 2v0c_A 692 --------------YRRVAEDREALLETSGVFQAEALEGKDRELYGKLHETLKKVTEDLEALRFNTAIAALM-EFLNALY 756 (878)
T ss_dssp --------------HHHHHHHHHHHHTCCCCCCGGGCCHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHH-HHHHHHH
T ss_pred --------------HHHHHHHHhcccccccccCcccCCHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHH-HHHHHHh
Confidence 2222221122211111111223567899999999999999999999999999999984 8886444
Q ss_pred HHHHhhhhcccchhHHHHHHHHHHHHhhcCcchhhHHHHHHHhcccccchhhhhhhhhhhhhhhhhhhhhhhhhHHHhhh
Q psy5309 1402 KYRELTAAEGGMHRTLVLRFVEVQALLLCPVCPHVAEHVEMNLKIKETEDHYTKMLFKEALRTGFFELQAARDKYRELTA 1481 (1618)
Q Consensus 1402 ~Y~~~~~~~~~~~~~~~l~~~~~~a~ll~P~~P~~a~~i~~~L~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~ 1481 (1618)
.|.+..
T Consensus 757 k~~~~~-------------------------------------------------------------------------- 762 (878)
T 2v0c_A 757 EYRKDR-------------------------------------------------------------------------- 762 (878)
T ss_dssp HHHHHC--------------------------------------------------------------------------
T ss_pred hhcccc--------------------------------------------------------------------------
Confidence 442100
Q ss_pred hhhchHHHHHHHHHHHHHHHhccchhhHHHHHHHHcCCCCceEeccCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5309 1482 AEGGMHRTLVLRFVEVQALLLCPVCPHVAEHVYQLLGKKGSIVKARWPEGGPIDDILVRSSSYLMEAAHAFRLQVKNHIL 1561 (1618)
Q Consensus 1482 ~~~~~~~~~l~~~l~~~~~llaPi~P~~aEeiw~~l~~~~sv~~~~~p~~~~~~~~l~~~~~~~~~~i~~~R~~~~~~~e 1561 (1618)
..++++.++|+.+++|||||+||+|||+|+.|+ ++||+.+.||+.++. ...++.++.+++ +|..+...++
T Consensus 763 ----~~~~~l~~~l~~l~~LLaPf~P~~aEElw~~Lg-~~sv~~~~wP~~d~~-~l~~~~~~~~vq----vngkvR~~i~ 832 (878)
T 2v0c_A 763 ----PVTPVYRTAIRYYLQMLFPFAPHLAEELWHWFW-PDSLFEAGWPELDEK-ALEKDVVEVAVQ----VNGAVAGTIH 832 (878)
T ss_dssp ----CSCHHHHHHHHHHHHHHTTTSHHHHHHHHHHHC-SSCGGGSCCCCCCGG-GGC-----------------------
T ss_pred ----hhHHHHHHHHHHHHHHHcccchHHHHHHHHHcC-CCceeecCCCCCCHH-HHHHHHHHHHHh----hHHHHHHHcc
Confidence 012567899999999999999999999999998 789999999997641 112344555565 4444444444
Q ss_pred Hhhc
Q psy5309 1562 TASK 1565 (1618)
Q Consensus 1562 ~~r~ 1565 (1618)
.++.
T Consensus 833 v~~~ 836 (878)
T 2v0c_A 833 IPKD 836 (878)
T ss_dssp ----
T ss_pred cCcC
Confidence 4443
No 28
>1li5_A Cysrs, cysteinyl-tRNA synthetase, transfer RNA-Cys; cysteine, E.coli, ligase; 2.30A {Escherichia coli} SCOP: a.27.1.1 c.26.1.1 PDB: 1li7_A 1u0b_B
Probab=99.95 E-value=1.8e-27 Score=294.29 Aligned_cols=142 Identities=22% Similarity=0.238 Sum_probs=111.3
Q ss_pred ccccccccchhhhhhhhhccCCCCCCcCcEEEEccceeeCCccceeccCcccChHHHHhhcCccceEEeecccCcccccc
Q psy5309 1006 FSDLIQNHLTFFIYIHTAIWGDEPEMWPRGIRANGHLLLNSAKMSKSEGNFLTLTEAVKKFSADGMRLCLADSGDSVEDA 1085 (1618)
Q Consensus 1006 ~~~~~~~h~~~~i~~~~~~~p~~~~~~pk~v~~hG~vl~~G~KMSKS~GNvV~p~eii~~yGaDalRl~l~~~~~~~~D~ 1085 (1618)
|.|++||||+|+++++.++++ .++|+.+++|||++.+|+|||||+||+|+|.+++++||+|++|||+++ +++.+|+
T Consensus 227 G~Dl~fpH~~~~~aq~~a~~g---~~~~~~~~h~g~v~~~G~KMSKS~GN~v~~~dll~~~g~dalR~~ll~-~~~~~~~ 302 (461)
T 1li5_A 227 GSDLMFPHHENEIAQSTCAHD---GQYVNYWMHSGMVMVDREKMSKSLGNFFTVRDVLKYYDAETVRYFLMS-GHYRSQL 302 (461)
T ss_dssp BGGGTTTHHHHHHHHHHHHSS---SCCEEEECCBCCEEETTBCCCGGGTCCCBHHHHHTTSCHHHHHHHHHS-SCTTSCE
T ss_pred cCccCchHHHHHHHHHHHhcC---CCCCcEEEEeeEEEECCeEccccCCCccChhHHhhhCCHHHHHHHHHc-CCcCCCC
Confidence 334455667777777776654 346888889999999999999999999999999999999999999998 5899999
Q ss_pred cccHHHHHHHHh---hHHHHHHHHHHHHHhcccCCCCCCCCcchHHHHHHHHHHHHHHHHHH-hhccHHHHHHHHHHHHH
Q psy5309 1086 NFVESMADAGIL---RLYTFIEWVKEILATQSTLRTGSQDSFNDKVFLSEMNLKIKETEDHY-TKMLFKEALRTGFFELQ 1161 (1618)
Q Consensus 1086 ~fs~~~~~~~~~---kl~N~~~~l~~~l~~~~~~~~~~~~~~~D~~~l~~l~~~i~~v~~~~-e~~~f~~al~~~~~~l~ 1161 (1618)
+|+++.+.+..+ +++|+++++ . ... + . | .+..+.+.+.++| ++|+++.|+.. +++++
T Consensus 303 ~fs~~~l~~~~~~l~rl~n~~~~~----~--~~~---~---~-d-----~l~~~~~~~~~am~dd~n~~~Al~~-l~~l~ 363 (461)
T 1li5_A 303 NYSEENLKQARAALERLYTALRGT----D--KTV---A---P-A-----GGEAFEARFIEAMDDDFNTPEAYSV-LFDMA 363 (461)
T ss_dssp EECHHHHHHHHHHHHHHHHHHTTC----C--TTS---C---C-C-----SCHHHHHHHHHHHHBTSCHHHHHHH-HHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHh----h--cCC---C---H-H-----HHHHHHHHHHHHHHhccCHHHHHHH-HHHHH
Confidence 999998765443 444443322 0 011 1 1 2 3667888999999 99999999998 79999
Q ss_pred HHHHHHHHH
Q psy5309 1162 AARDKYREL 1170 (1618)
Q Consensus 1162 ~~~n~Yi~~ 1170 (1618)
+.+|.|++.
T Consensus 364 ~~~N~~~~~ 372 (461)
T 1li5_A 364 REVNRLKAE 372 (461)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHhc
Confidence 999999965
No 29
>2wfg_A Cytosolic leucyl-tRNA synthetase; ligase, editing domain, hydrolysis of MIS-charged trnas, benzoxaborole, anti-fungal; HET: ZZB; 2.20A {Candida albicans} PDB: 2wfe_A*
Probab=99.95 E-value=1.1e-28 Score=281.24 Aligned_cols=123 Identities=36% Similarity=0.559 Sum_probs=108.4
Q ss_pred ccccccCCCcceeeeeeccCCCCCCCCCCChhhHHHHHhhhccccccceeccccccCCCCchhhhHhhhccchhhhhhhh
Q psy5309 545 LNIKAEDLTPEVWDYVFFKSAPFPPKCRVPKAKLDIMRREFQYWYPVDLRCSGKVSTKLPWDEQWLIESLSDSTIYMAYY 624 (1618)
Q Consensus 545 ~~v~~~~gtg~v~~~~~~~~~~~~~~~~~p~~~~~~~~~~f~~wyp~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 624 (1618)
++|+++.|||+| |+ +|+|+ ++||.++.+|++++.+ |
T Consensus 124 dyV~~~~GTG~V------~~--------vPaHd------------~~Dy~~~~kl~~~~~~---y--------------- 159 (261)
T 2wfg_A 124 ETVLATKGTGVV------TC--------VPSDS------------PDDFVTTRDLANKPEY---Y--------------- 159 (261)
T ss_dssp TTCCTTSTTSCE------EE--------CTTTC------------HHHHHHHHHHHHSTTT---T---------------
T ss_pred ccccCCCCCCee------EE--------cCCCC------------HHHHHHHHHhhcchhh---c---------------
Confidence 899999999999 99 99999 9999999886655433 4
Q ss_pred hhhhhccCCccccCCCCcccccceeeeeccCCCCccccccCCCCCchHHHHHHHhccCCcccHHHHHHHHHHHHhhcccc
Q psy5309 625 TVAHLLQGGTFRGENGNALNINCVIVFQVLPYDPVPIIQVPEYGNLCAVTVYEKLKIQSQNDKDKLQEAKELVYLKGFYD 704 (1618)
Q Consensus 625 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~ 704 (1618)
|+.. +++ +++++++|+.+++|++++..++++++|.||+|.++|++|++.+|++||+.
T Consensus 160 ---------------gi~~-------~~~-~L~i~~vId~~~~g~~~~~~~~~~~~i~s~~d~~~l~~a~~~~y~~G~~~ 216 (261)
T 2wfg_A 160 ---------------GIEK-------DWV-QTDIVPIVHTEKYGDKCAEFLVNDLKIQSPKDSVQLANAKELAYKEGFYN 216 (261)
T ss_dssp ---------------TCCG-------GGC-CCCCCCCEEBTTTBTCHHHHHHHHTTCCSTTCHHHHHHHHHHHHHHHHHH
T ss_pred ---------------CCcc-------ccc-cCCceeEEcCcccCccchhhhhccccccccchhhhhhhhhhhhhhccccc
Confidence 4321 123 46678889989999999999999999999999999999999999999999
Q ss_pred eeeeecccCCcchHHHHHHHHHHHHHhCCc
Q psy5309 705 GIMLVGEFKGKKVQEVKKLLQKKIDIIGVA 734 (1618)
Q Consensus 705 G~~~~~~~~G~~v~~a~~~i~~~L~~~g~~ 734 (1618)
|.|++|+|+|+++++||+.|+++|+++|++
T Consensus 217 g~~~~g~f~Gl~v~eA~~~Ii~~L~~~G~~ 246 (261)
T 2wfg_A 217 GTMLIGKYKGDKVEDAKPKVKQDLIDEGLA 246 (261)
T ss_dssp CEECSSTTTTSBHHHHHHHHHHHHHHTTSE
T ss_pred ceEeccccCCeEHHHHHHHHHHHHHHCCCe
Confidence 999899999999999999999999999964
No 30
>3kfl_A Methionyl-tRNA synthetase; parasite, aminoacyl-tRNA synthetase, tRNA ligase metrs, methionine, translation, ATP-binding; HET: ME8; 2.00A {Leishmania major}
Probab=99.95 E-value=4.5e-28 Score=308.37 Aligned_cols=215 Identities=18% Similarity=0.218 Sum_probs=175.7
Q ss_pred HHHhCCCccccccchhhhhhhcccCCCCCCcccceeccccccccccccccccCCcCCHHHHHHhcCcceeeeehhccCCC
Q psy5309 1205 YQLLGKDLIQNHLTFFIYIHTAIWGDEPEMWPRGIRANGHLLLNSAKMSKSEGNFLTLTEAVKKFSADGMRLCLADSGDS 1284 (1618)
Q Consensus 1205 ~~~Lgkd~~svh~~~f~s~~~~~~p~~~~~~p~~v~~hGfvld~G~KMSKSlGNvI~P~~ii~~yGaD~lRl~l~~~~~~ 1284 (1618)
.+..|+|+..+|..+||+.+.+. +..||+.|++|||+..+|+|||||+||||+|.+++++||+|++||||++.++.
T Consensus 297 v~~~GkDii~FH~~~wpa~L~a~----g~~~~~~v~~hg~v~~~G~KMSKS~GNvV~p~d~i~~~G~DalR~~ll~~~~~ 372 (564)
T 3kfl_A 297 VHVVGKDILKFHAIYWPAFLMSA----ELPLPERLVSHGWWTKDHKKISKSLGNAFDPVEKAKEFGIDALKYFLMRESNF 372 (564)
T ss_dssp EEEEEGGGHHHHHTHHHHHHHHT----TCCCCSCEEEECCEEETTEECCTTTTCCCCHHHHHHHHCHHHHHHHHHHHCCS
T ss_pred eEEEeecccchHHHHHHHHHHhC----CCCCCcEEEEcccEeeCCccccccCCCCCCHHHHHHHcCcHHHHHHHHHcCCc
Confidence 45679999999999999876653 45789999999999669999999999999999999999999999999997799
Q ss_pred CcCcccCHHHHHHHHHHhhhhhhhhhcccCCCCcchhhHHHHHhhhhhhhhhhHHHHHHHHhhcccccCCCCCCCcchHH
Q psy5309 1285 VEDANFVESMADAAVKKFSADGMRLCLADSGDSVEDANFVESMADAGILRLYTFIEWVKEILATQSTLRTGSQDSFNDKV 1364 (1618)
Q Consensus 1285 ~~D~~fs~~~l~~~~~~~n~~~~~~~l~n~gnl~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~ 1364 (1618)
++|++||++.+.+ ..|++ |. ++++|.++|+.++.. .+++. .+....+...|+|
T Consensus 373 ~~D~~fs~~~~~~---~~n~~-----l~--~~l~N~~~R~~~~~~---------------~~~g~--~p~~~~~~~~d~~ 425 (564)
T 3kfl_A 373 QDDGDYSDKNMVA---RLNGE-----LA--DTLGNLVSRCVAPKI---------------NVNGM--WPEPAEYSESDKT 425 (564)
T ss_dssp SCCEECCHHHHHH---HHHHT-----TT--TTHHHHHHHHHCTTT---------------STTSB--CCCCCCCCHHHHH
T ss_pred ccCCCCCHHHHHH---HHHHH-----HH--HHHHHHHHHHHHHHH---------------hcCCc--CCCCCCCCHHHHH
Confidence 9999999996554 44433 11 122333666655432 12322 2223445678999
Q ss_pred HHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHhhhhcccc---------hhHHHHHHHHHHHHhhcCcchh
Q psy5309 1365 FLSEMNLKIKETEDHYTKMLFKEALRTGFFELQAARDKYRELTAAEGGM---------HRTLVLRFVEVQALLLCPVCPH 1435 (1618)
Q Consensus 1365 il~~l~~l~~~v~~~~e~~~f~~a~~~i~~~f~~~~n~Y~~~~~~~~~~---------~~~~~l~~~~~~a~ll~P~~P~ 1435 (1618)
++++++++++++.++|++|+|++|++.++ +|+.++|+|++.++||... ..++++++++.+++||+||||+
T Consensus 426 ll~~l~~~~~~v~~a~e~~~~~~a~~~i~-~l~~~~n~Y~~~~kpW~l~~~~~~~~~~~~~~l~~~l~~l~~lL~P~~P~ 504 (564)
T 3kfl_A 426 LIASLNNLAGTVDHYYCLPDIQHALIAIF-DVLRSLNAYVTENAPWKLVKMDTARLGTVLYVTMEGLRICTMFLQPVMPQ 504 (564)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHH-HHHHHHHHHHHHHCHHHHTTTCHHHHHHHHHHHHHHHHHHHHHHTTTSHH
T ss_pred HHHHHHHHHHHHHHHHHcccHHHHHHHHH-HHHHHHHHHHHhcCChhhhcCCHHHHHHHHHHHHHHHHHHHHHHHhHhhH
Confidence 99999999999999999999999999984 9999999999999998641 2367899999999999999999
Q ss_pred hHHHHHHHhcccccch
Q psy5309 1436 VAEHVEMNLKIKETED 1451 (1618)
Q Consensus 1436 ~a~~i~~~L~~~~~~~ 1451 (1618)
+|++|+++||+....+
T Consensus 505 ~ae~i~~~Lg~~~~~~ 520 (564)
T 3kfl_A 505 KAKEIMDALGVPEAAR 520 (564)
T ss_dssp HHHHHHHHHTCCGGGS
T ss_pred HHHHHHHHcCCCcccc
Confidence 9999999999976543
No 31
>1rqg_A Methionyl-tRNA synthetase; translation, dimerization, ligase; 2.90A {Pyrococcus abyssi} SCOP: a.27.1.1 c.26.1.1 g.41.1.1
Probab=99.94 E-value=5.9e-28 Score=314.23 Aligned_cols=216 Identities=22% Similarity=0.251 Sum_probs=174.1
Q ss_pred HHHhCCCccccccchhhhhhhcccC------CCCCCcccceeccccccccccccccccCCcCCHHHHHHhcCcceeeeeh
Q psy5309 1205 YQLLGKDLIQNHLTFFIYIHTAIWG------DEPEMWPRGIRANGHLLLNSAKMSKSEGNFLTLTEAVKKFSADGMRLCL 1278 (1618)
Q Consensus 1205 ~~~Lgkd~~svh~~~f~s~~~~~~p------~~~~~~p~~v~~hGfvld~G~KMSKSlGNvI~P~~ii~~yGaD~lRl~l 1278 (1618)
++..|+|+..+|...||..+...-. ..+..+|+.+++|||++++|+|||||+||||+|.+++++||+|+|||||
T Consensus 292 ~h~~GkDii~fH~~~wpA~l~~~~~~l~~d~~rg~~~Pk~v~~hG~v~~~G~KMSKS~GNvV~p~d~i~~ygaDalR~~l 371 (722)
T 1rqg_A 292 IHFIGKDNIPFHAIFWPAFLMAYGKYKDEEVEAEWNLPYDIPANEYLTLEGKKFSTSRNWAIWVHEFLDVFPADYLRYYL 371 (722)
T ss_dssp EEEEEGGGHHHHHTHHHHHHHTTCCBCSSSCCBCBCCCSBCCEECCEEETTEECBTTTTBSCBHHHHTTTSCHHHHHHHH
T ss_pred EEEccccccccchhhhHHHHhccCCCcccccccCCCCCCEEEEeeeEEeCCeeeeeeCCCcCCHHHHHHhcCchHHHHHH
Confidence 3567999999999988876554210 0123567999999999999999999999999999999999999999999
Q ss_pred hccCCCCcCcccCHHHHHHHHHHhhhhhhhhhccc-CCCCcchhhHHHHHhhhhhhhhhhHHHHHHHHhhcccccCCCCC
Q psy5309 1279 ADSGDSVEDANFVESMADAAVKKFSADGMRLCLAD-SGDSVEDANFVESMADAGILRLYTFIEWVKEILATQSTLRTGSQ 1357 (1618)
Q Consensus 1279 ~~~~~~~~D~~fs~~~l~~~~~~~n~~~~~~~l~n-~gnl~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1357 (1618)
++.+++++|++||++.+.+ +.|++ |.| +||+ +||+..+. .+.+++. .+....
T Consensus 372 l~~~~~~~D~~fs~~~~~~---~~n~~-----l~~~l~N~---~~R~~~~~--------------~k~~~~~--~~~~~~ 424 (722)
T 1rqg_A 372 TTIMPETRDSDFSFSDFKV---RINEE-----LVNNLGNF---VHRALTFV--------------NRYFDGV--VPERGE 424 (722)
T ss_dssp HHTCCSSSCEEECHHHHHH---HHHHT-----TTTTHHHH---HHHHHHHH--------------HHHSTTB--CCCCCC
T ss_pred HhcCCCCCCCccCHHHHHH---HHHHH-----HHHHHHHH---HHHHHHHH--------------HHhcCCC--CCCccc
Confidence 9998999999999996544 44433 222 2333 56655543 3555543 222234
Q ss_pred CCcchHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHhhhhcccc---------hhHHHHHHHHHHHHh
Q psy5309 1358 DSFNDKVFLSEMNLKIKETEDHYTKMLFKEALRTGFFELQAARDKYRELTAAEGGM---------HRTLVLRFVEVQALL 1428 (1618)
Q Consensus 1358 ~~~~D~~il~~l~~l~~~v~~~~e~~~f~~a~~~i~~~f~~~~n~Y~~~~~~~~~~---------~~~~~l~~~~~~a~l 1428 (1618)
+...|+|++++++++++++.++|++|+|++|+++++ +|++++|+|++.++||... ..++++++++.++.|
T Consensus 425 ~~~~d~~ll~~l~~~~~~v~~~~e~~~f~~A~~~i~-~~~~~~n~Yi~~~kpw~~~k~~~~~~~~vl~~l~~~l~~l~~l 503 (722)
T 1rqg_A 425 LDELDREALEEIEKAFKEVGELIMNYRFKDALKRVM-SLASFGNRYFDHKQPWKTAKEDKVRTGTTVNISLQIVKALGIL 503 (722)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHH-HHHHHHHHHHHTTCHHHHTTTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHH-HHHHHHHHHHHhcCchhhcCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 567899999999999999999999999999999985 9999999999999998641 225678999999999
Q ss_pred hcCcchhhHHHHHHHhcccc
Q psy5309 1429 LCPVCPHVAEHVEMNLKIKE 1448 (1618)
Q Consensus 1429 l~P~~P~~a~~i~~~L~~~~ 1448 (1618)
|+||||++|++||++|+.+.
T Consensus 504 L~P~~P~~aeei~~~L~~~~ 523 (722)
T 1rqg_A 504 LEPFLPDASEKIWHLLNLDE 523 (722)
T ss_dssp HTTTCHHHHHHHHHHTTCCS
T ss_pred hhccccHHHHHHHHHcCCCc
Confidence 99999999999999999864
No 32
>4dlp_A Aminoacyl-tRNA synthetase, class I:aminoacyl-tRNA synthetase, class IA:methionyl-tRNA...; structural genomics; 2.65A {Brucella melitensis biovar abortus 230ORGANISM_TAXID}
Probab=99.94 E-value=7.9e-28 Score=305.34 Aligned_cols=218 Identities=20% Similarity=0.226 Sum_probs=165.6
Q ss_pred HHhCCCccccccchhhhhhhcccCCCCCCcccceeccccccccccccccccCCcCCHHHHHHhcCcceeeeehhccCCCC
Q psy5309 1206 QLLGKDLIQNHLTFFIYIHTAIWGDEPEMWPRGIRANGHLLLNSAKMSKSEGNFLTLTEAVKKFSADGMRLCLADSGDSV 1285 (1618)
Q Consensus 1206 ~~Lgkd~~svh~~~f~s~~~~~~p~~~~~~p~~v~~hGfvld~G~KMSKSlGNvI~P~~ii~~yGaD~lRl~l~~~~~~~ 1285 (1618)
+..|+|+..+|..+|++.+.+. +..||+.|++||||+++|+|||||+||||+|.+++++||+|++|||+++.++.+
T Consensus 280 ~~~G~D~~~fh~~~~~a~l~a~----g~~~~~~v~~hg~v~~~G~KMSKS~GNvi~p~d~i~~~GaDalR~~ll~~~~~~ 355 (536)
T 4dlp_A 280 HIIGKDISRFHAVYWPAFLMSA----QLPLPKRVFAHGFLFNRGEKMSKSVGNVIDPFELVERYGLDQLRYFLMREVPFG 355 (536)
T ss_dssp EEEEGGGHHHHHTHHHHHHHHT----TCCCCSCEEEECCEEC------------CCHHHHHHHHCHHHHHHHHHHHSCTT
T ss_pred EEeechHHHHHHHHHHHHHHHC----CCCCCcEEEeeeeEeeCCceecccCCCCCCHHHHHHHcCcHHHHHHHHhcCCCC
Confidence 4569999999999998776653 456899999999999999999999999999999999999999999999977999
Q ss_pred cCcccCHHHHHHHHHHhhhhhhhhhcccCCCCcchhhHHHHHhhhhhhhhhhHHHHHHHHhhcccccCCCCCCCcchHHH
Q psy5309 1286 EDANFVESMADAAVKKFSADGMRLCLADSGDSVEDANFVESMADAGILRLYTFIEWVKEILATQSTLRTGSQDSFNDKVF 1365 (1618)
Q Consensus 1286 ~D~~fs~~~l~~~~~~~n~~~~~~~l~n~gnl~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~i 1365 (1618)
+|++||++.+.+ ..|.. |. ++++|.++|+.++. .+.+++. .+....+...|+|+
T Consensus 356 ~d~~fs~~~~~~---~~n~~-----l~--~~l~N~~~R~~~~~--------------~~~~~~~--~p~~~~~~~~d~~l 409 (536)
T 4dlp_A 356 QDGSYSHEAIVN---RTNAD-----LA--NDLGNLAQRSLSMI--------------AKNCEGK--VPQPGAFSEADKAI 409 (536)
T ss_dssp SCEECCHHHHHH---HHHHH-----CC--CCCHHHHHHHHHHH--------------HHHSTTB--CCCCCCCCHHHHHH
T ss_pred CCCCCCHHHHHH---HHHHH-----HH--HHHHHHHHHHHHHH--------------HhhcCCC--CCCcccCCHHHHHH
Confidence 999999997654 33322 11 22334466765553 2444433 22234566789999
Q ss_pred HHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHhhhhcccc---------hhHHHHHHHHHHHHhhcCcchhh
Q psy5309 1366 LSEMNLKIKETEDHYTKMLFKEALRTGFFELQAARDKYRELTAAEGGM---------HRTLVLRFVEVQALLLCPVCPHV 1436 (1618)
Q Consensus 1366 l~~l~~l~~~v~~~~e~~~f~~a~~~i~~~f~~~~n~Y~~~~~~~~~~---------~~~~~l~~~~~~a~ll~P~~P~~ 1436 (1618)
+++++++++.+.++|++|+|++|++.++ +|+.++|+|++.++||... ..++++++++.++.||+||||++
T Consensus 410 l~~l~~~~~~v~~a~~~~~~~~a~~~l~-~l~~~~n~Y~~~~k~w~l~~~~~~~~~~~~~~l~~~l~~~~~lL~P~~P~~ 488 (536)
T 4dlp_A 410 LDQADAALETARKAMDDQALHLALGAIF-AVVAEANRYFAGQEPWALRKTDPARMGTVLYVTAEVLRRVGIMVQPFIPQS 488 (536)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHH-HHHHHHHHHHHHHCHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHTTTSHHH
T ss_pred HHHHHHHHHHHHHHHHccCHHHHHHHHH-HHHHHHHHHHHhCCchhhcCCCHHHHHHHHHHHHHHHHHHHHHhcCcccHH
Confidence 9999999999999999999999999985 9999999999999987541 22668899999999999999999
Q ss_pred HHHHHHHhcccccchhhh
Q psy5309 1437 AEHVEMNLKIKETEDHYT 1454 (1618)
Q Consensus 1437 a~~i~~~L~~~~~~~~~~ 1454 (1618)
|++|+++||++...+.|.
T Consensus 489 aeei~~~L~~~~~~~~~~ 506 (536)
T 4dlp_A 489 AEKLLDILAVPADKRQFA 506 (536)
T ss_dssp HHHHHHTTTCCTTSCSTH
T ss_pred HHHHHHHcCCCccccCHH
Confidence 999999999976544443
No 33
>3h99_A Methionyl-tRNA synthetase; rossmann fold, aminoacyl-tRNA synthetase, ATP-binding, ligas binding, nucleotide-binding, protein biosynthesis; HET: CIT; 1.40A {Escherichia coli} PDB: 3h97_A* 3h9b_A* 1f4l_A 3h9c_A* 1pfv_A* 1pfu_A 1p7p_A* 1pfw_A* 1pfy_A* 1pg0_A* 1pg2_A* 1qqt_A 1mea_A 1med_A
Probab=99.94 E-value=1.1e-27 Score=305.67 Aligned_cols=226 Identities=18% Similarity=0.249 Sum_probs=172.5
Q ss_pred HHHHHhCCCccccccchhhhhhhcccCCCCCCcccceeccccccccccccccccCCcCCHHHHHHhcCcceeeeehhccC
Q psy5309 1203 HVYQLLGKDLIQNHLTFFIYIHTAIWGDEPEMWPRGIRANGHLLLNSAKMSKSEGNFLTLTEAVKKFSADGMRLCLADSG 1282 (1618)
Q Consensus 1203 ei~~~Lgkd~~svh~~~f~s~~~~~~p~~~~~~p~~v~~hGfvld~G~KMSKSlGNvI~P~~ii~~yGaD~lRl~l~~~~ 1282 (1618)
++.+.+|+|+..+|..+|+..+... +..+|+.|++||||+++|+|||||+||||+|.+++++||+|++||||++.+
T Consensus 301 ~~~~~~G~D~~~fh~~~~~a~l~~~----g~~~p~~v~~hg~v~~~G~KMSKS~GNvv~p~d~i~~~GaDalR~~ll~~~ 376 (560)
T 3h99_A 301 ELYHFIGKDIVYFLSLFWPAMLEGS----NFRKPSNLFVHGYVTVNGAKMSKSRGTFIKASTWLNHFDADSLRYYYTAKL 376 (560)
T ss_dssp EEEEEEEGGGHHHHHTHHHHHHHHT----TBCCCSEEEEECCEEETTEECCTTTTCCCBHHHHHHHSCHHHHHHHHHHHC
T ss_pred eeEEEeccccchhHHHHHHHHHHhC----CCCCCcEEEEEeEEEeCCeeccccCCCcCCHHHHHHHcCcHHHHHHHHHhC
Confidence 3456679999999999998766552 235679999999999999999999999999999999999999999999987
Q ss_pred CCC-cCcccCHHHHHHHHHHhhhhhhhhhcccCCCCcchhhHHHHHhhhhhhhhhhHHHHHHHHhhcccccCCCCCCCcc
Q psy5309 1283 DSV-EDANFVESMADAAVKKFSADGMRLCLADSGDSVEDANFVESMADAGILRLYTFIEWVKEILATQSTLRTGSQDSFN 1361 (1618)
Q Consensus 1283 ~~~-~D~~fs~~~l~~~~~~~n~~~~~~~l~n~gnl~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1361 (1618)
+.+ +|++||++.+.+ ..|.. ++.+++ |.++|+.++.. +.+++. .+ ....
T Consensus 377 ~~~~~d~~f~~~~~~~---~~~~~----l~~~l~---n~~~R~~~~~~--------------~~~~~~--~~----~~~~ 426 (560)
T 3h99_A 377 SSRIDDIDLNLEDFVQ---RVNAD----IVNKVV---NLASRNAGFIN--------------KRFDGV--LA----SELA 426 (560)
T ss_dssp CSSCCCEEECHHHHHH---HHHHH----CCCCCT---HHHHTTHHHHH--------------HHSTTB--CC----SSCS
T ss_pred CCCCCCCCcCHHHHHH---HHHHH----HHHHHH---HHHHHHHHHHH--------------HhcCCC--CC----Cccc
Confidence 877 899999996543 33322 222224 44677665532 444432 11 1356
Q ss_pred hHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHhhhhcccchhHHHHHHHHHHHHhhcCcchhhHHHHH
Q psy5309 1362 DKVFLSEMNLKIKETEDHYTKMLFKEALRTGFFELQAARDKYRELTAAEGGMHRTLVLRFVEVQALLLCPVCPHVAEHVE 1441 (1618)
Q Consensus 1362 D~~il~~l~~l~~~v~~~~e~~~f~~a~~~i~~~f~~~~n~Y~~~~~~~~~~~~~~~l~~~~~~a~ll~P~~P~~a~~i~ 1441 (1618)
|+|++++++++++.+.++|++|+|+.|++.++ +|++.+|+|++.++||.
T Consensus 427 d~~ll~~l~~~~~~v~~~~e~~~~~~a~~~l~-~l~~~~n~Yi~~~kpw~------------------------------ 475 (560)
T 3h99_A 427 DPQLYKTFTDAAEVIGEAWESREFGKAVREIM-ALADLANRYVDEQAPWV------------------------------ 475 (560)
T ss_dssp CHHHHHHHHHTHHHHHHHHHTTCHHHHHHHHH-HHHHHHHHHHHHHCHHH------------------------------
T ss_pred cHHHHHHHHHHHHHHHHHHHccCHHHHHHHHH-HHHHHHHHHHHhcCchh------------------------------
Confidence 99999999999999999999999999999985 99999999999887531
Q ss_pred HHhcccccchhhhhhhhhhhhhhhhhhhhhhhhhHHHhhhhhhchHHHHHHHHHHHHHHHhccchhhHHHHHHHHcCCCC
Q psy5309 1442 MNLKIKETEDHYTKMLFKEALRTGFFELQAARDKYRELTAAEGGMHRTLVLRFVEVQALLLCPVCPHVAEHVYQLLGKKG 1521 (1618)
Q Consensus 1442 ~~L~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~llaPi~P~~aEeiw~~l~~~~ 1521 (1618)
..|.. .+..++. ....++..+|+.+++||+|||||+|||||+.|+-+
T Consensus 476 -------------------l~k~~-----~~~~~~~--------~~~~~~~~~l~~~~~lL~P~~P~~aeei~~~L~~~- 522 (560)
T 3h99_A 476 -------------------VAKQE-----GRDADLQ--------AICSMGINLFRVLMTYLKPVLPKLTERAEAFLNTE- 522 (560)
T ss_dssp -------------------HTTST-----TCHHHHH--------HHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHTSC-
T ss_pred -------------------hcCCc-----CcHHHHH--------HHHHHHHHHHHHHHHHHhccccHHHHHHHHHcCCC-
Confidence 01110 0000111 24456789999999999999999999999999732
Q ss_pred ceEeccCCC
Q psy5309 1522 SIVKARWPE 1530 (1618)
Q Consensus 1522 sv~~~~~p~ 1530 (1618)
+.||.
T Consensus 523 ----~~w~~ 527 (560)
T 3h99_A 523 ----LTWDG 527 (560)
T ss_dssp ----CCTGG
T ss_pred ----CChhh
Confidence 56765
No 34
>4arc_A Leucine--tRNA ligase; ligase-RNA complex, nucleotide-binding, protein biosynthesis I aminoacyl-tRNA synthetase, ATP-binding; 2.00A {Escherichia coli} PDB: 4aq7_A 4ari_A* 4as1_A*
Probab=99.94 E-value=8e-27 Score=305.37 Aligned_cols=191 Identities=21% Similarity=0.253 Sum_probs=150.3
Q ss_pred CCCcccceecccccc-------c-ccc------------------------------------ccccccCCcCCHHHHHH
Q psy5309 1232 PEMWPRGIRANGHLL-------L-NSA------------------------------------KMSKSEGNFLTLTEAVK 1267 (1618)
Q Consensus 1232 ~~~~p~~v~~hGfvl-------d-~G~------------------------------------KMSKSlGNvI~P~~ii~ 1267 (1618)
...|++.+++||+|+ | +|+ |||||+||||+|.++|+
T Consensus 576 ~~ePFk~ll~qGmVl~~~~~~~d~~G~~~~~~~~~v~~~~~~~~~~~~~~~~~G~~v~~~~~eKMSKSkGNvVdP~diIe 655 (880)
T 4arc_A 576 SDEPAKQLLCQGMVLADAFYYVGENGERNWVSPVDAIVERDEKGRIVKAKDAAGHELVYTGMSKMSKSKNNGIDPQVMVE 655 (880)
T ss_dssp CSCSEEEEECCCCEEEEEEEEECTTSCEEEECSTTCEEEECTTCCEEEEECTTCCBCEEEEEEECCTTTTCCCCHHHHHH
T ss_pred CCCChHHeEEeceEeecceeccccCCcccccCHHHhccccccccccccccccCCccccccccccccCcCCCCCCHHHHHH
Confidence 457899999999997 6 787 99999999999999999
Q ss_pred hcCcceeeeehhccCCCCcCcccCHHHHHHHHHHhhhhhhhhhcccCCCCcchhhHHHHHhhhhhhhhhhHHHHHHHHhh
Q psy5309 1268 KFSADGMRLCLADSGDSVEDANFVESMADAAVKKFSADGMRLCLADSGDSVEDANFVESMADAGILRLYTFIEWVKEILA 1347 (1618)
Q Consensus 1268 ~yGaD~lRl~l~~~~~~~~D~~fs~~~l~~~~~~~n~~~~~~~l~n~gnl~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~ 1347 (1618)
+||||++|||+++.+++.+|++||++.+++..+.++.. +++..+....
T Consensus 656 kYGADalRl~ll~~~~~~~dl~~s~~~ie~a~rfl~rl------------------------------wn~~~~~~~~-- 703 (880)
T 4arc_A 656 RYGADTVRLFMMFASPADMTLEWQESGVEGANRFLKRV------------------------------WKLVYEHTAK-- 703 (880)
T ss_dssp HHCHHHHHHHHHHSSCTTSCEECCHHHHHHHHHHHHHH------------------------------HHHHHHHHHT--
T ss_pred HcCchHHHHHHHhcCCCCCCcccCHHHHHHHHHHHHHH------------------------------HHHHHHHHhc--
Confidence 99999999999999899999999999988766555532 2222221111
Q ss_pred cccccCCCCCCCcchHHHHHHHHHHHHHHHHHHh-cccHHHHHHHHHHHHHHHHHHHHHhhhhcccchhHHHHHHHHHHH
Q psy5309 1348 TQSTLRTGSQDSFNDKVFLSEMNLKIKETEDHYT-KMLFKEALRTGFFELQAARDKYRELTAAEGGMHRTLVLRFVEVQA 1426 (1618)
Q Consensus 1348 ~~~~~~~~~~~~~~D~~il~~l~~l~~~v~~~~e-~~~f~~a~~~i~~~f~~~~n~Y~~~~~~~~~~~~~~~l~~~~~~a 1426 (1618)
+.........+...|+|+++++++++++++++|+ +|+|+.|+++++ +|++..+.|.
T Consensus 704 ~~~~~~~~~~l~~~D~~ll~~l~~~i~~V~~a~ed~~~fntAi~~l~-efvn~l~k~~---------------------- 760 (880)
T 4arc_A 704 GDVAALNVDALTENQKALRRDVHKTIAKVTDDIGRRQTFNTAIAAIM-ELMNKLAKAP---------------------- 760 (880)
T ss_dssp CCCCCCCSTTCCHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHH-HHHHHHHTSC----------------------
T ss_pred ccccccccccCCHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHH-HHHHHHHhhh----------------------
Confidence 1111111234567899999999999999999998 899999999974 8874211110
Q ss_pred HhhcCcchhhHHHHHHHhcccccchhhhhhhhhhhhhhhhhhhhhhhhhHHHhhhhhhchHHHHHHHHHHHHHHHhccch
Q psy5309 1427 LLLCPVCPHVAEHVEMNLKIKETEDHYTKMLFKEALRTGFFELQAARDKYRELTAAEGGMHRTLVLRFVEVQALLLCPVC 1506 (1618)
Q Consensus 1427 ~ll~P~~P~~a~~i~~~L~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~llaPi~ 1506 (1618)
+. ....+.++..+++.+++|||||+
T Consensus 761 ------------------------------------~~-------------------~~~~~~~l~~~l~~ll~LLaPf~ 785 (880)
T 4arc_A 761 ------------------------------------TD-------------------GEQDRALMQEALLAVVRMLNPFT 785 (880)
T ss_dssp ------------------------------------CS-------------------SHHHHHHHHHHHHHHHHHHTTTS
T ss_pred ------------------------------------cc-------------------chHHHHHHHHHHHHHHHHHhhcc
Confidence 00 00245678899999999999999
Q ss_pred hhHHHHHHHHcCCCCceEeccCCCCC
Q psy5309 1507 PHVAEHVYQLLGKKGSIVKARWPEGG 1532 (1618)
Q Consensus 1507 P~~aEeiw~~l~~~~sv~~~~~p~~~ 1532 (1618)
||+|||+|+.|+..+||+.+.||+.+
T Consensus 786 PhiaEElW~~Lg~~~sv~~~~wP~~d 811 (880)
T 4arc_A 786 PHICFTLWQELKGEGDIDNAPWPVAD 811 (880)
T ss_dssp HHHHHHHHHHTTCSSCGGGSCCCCCC
T ss_pred HHHHHHHHHHcCCCCeEEeCCCCCCC
Confidence 99999999999988999999999976
No 35
>2csx_A Methionyl-tRNA synthetase; ligase, riken structural genomics/proteomics initiative, RSGI, structural genomics, ligase/RNA complex; 2.70A {Aquifex aeolicus} PDB: 2ct8_A*
Probab=99.93 E-value=2e-26 Score=290.44 Aligned_cols=216 Identities=22% Similarity=0.280 Sum_probs=164.3
Q ss_pred HHhCCCccccccchhhhhhhcccCCCCCCcccceeccccccccccccccccCCcCCHHHHHHhcCcceeeeehhccCCCC
Q psy5309 1206 QLLGKDLIQNHLTFFIYIHTAIWGDEPEMWPRGIRANGHLLLNSAKMSKSEGNFLTLTEAVKKFSADGMRLCLADSGDSV 1285 (1618)
Q Consensus 1206 ~~Lgkd~~svh~~~f~s~~~~~~p~~~~~~p~~v~~hGfvld~G~KMSKSlGNvI~P~~ii~~yGaD~lRl~l~~~~~~~ 1285 (1618)
+..|+|+..+|...|++.+.+. +..||+.+++||||+++|+|||||+||+|+|.+++++||+|++|||+++.+++.
T Consensus 254 ~~~G~D~~~~H~~~~~a~l~~~----g~~~~~~~~~~G~v~~~G~KMSKS~GN~i~~~dli~~~g~DalR~~ll~~~~~~ 329 (497)
T 2csx_A 254 HLVGKDILRFHTVYWPAFLMSL----GYELPKKVFAHGWWTVEGKKMSKTLGNVVDPYEVVQEYGLDEVRYFLLREVPFG 329 (497)
T ss_dssp EEEEGGGHHHHHTHHHHHHHHH----TCCCCSCEEEECCEESSSSBCCTTTTCCCCHHHHHHHHCHHHHHHHHHHSSCTT
T ss_pred EEeecchhHhHHHHHHHHHHHc----CCCCCcEEEECcEEEeCCceeCCcCCCCCCHHHHHHHCCcHHHHHHHHhcCCcc
Confidence 3458998888988888765443 456899999999999999999999999999999999999999999999977999
Q ss_pred cCcccCHHHHHHHHHHhhhhhhhhhcccCCCCcchhhHHHHHhhhhhhhhhhHHHHHHHHhhcccccCCCCCCCcchHHH
Q psy5309 1286 EDANFVESMADAAVKKFSADGMRLCLADSGDSVEDANFVESMADAGILRLYTFIEWVKEILATQSTLRTGSQDSFNDKVF 1365 (1618)
Q Consensus 1286 ~D~~fs~~~l~~~~~~~n~~~~~~~l~n~gnl~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~i 1365 (1618)
+|++||++.+.+ ..|+. |.+. ++|.++|+.++.. +.+++. .+ ...|+|+
T Consensus 330 ~d~~fs~~~l~~---~~~~~-----l~~~--l~n~~~R~~~~~~--------------~~~~~~--~~-----~~~d~~l 378 (497)
T 2csx_A 330 QDGDFSKKAILN---RINGE-----LANE--IGNLYSRVVNMAH--------------KFLGGE--VS-----GARDEEY 378 (497)
T ss_dssp SCEECCHHHHHH---HHHHT-----CCCC--CHHHHHHHHHHHH--------------HHSTTC--BC-----CCCCTTH
T ss_pred cCCCCChHHHHH---HHHHH-----HHHH--HHHHHHHHHHHHH--------------HhcCCC--CC-----chhHHHH
Confidence 999999997765 23322 2222 2233566554422 222221 11 3569999
Q ss_pred HHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHhhhhcccchhHHHHHHHHHHHHhhcCcchhhHHHHHHHhc
Q psy5309 1366 LSEMNLKIKETEDHYTKMLFKEALRTGFFELQAARDKYRELTAAEGGMHRTLVLRFVEVQALLLCPVCPHVAEHVEMNLK 1445 (1618)
Q Consensus 1366 l~~l~~l~~~v~~~~e~~~f~~a~~~i~~~f~~~~n~Y~~~~~~~~~~~~~~~l~~~~~~a~ll~P~~P~~a~~i~~~L~ 1445 (1618)
+++++++++++.++|++|+|+.|++.++ +|+..+|.|++.++||.
T Consensus 379 ~~~l~~~~~~v~~~~~~~~~~~a~~~l~-~l~~~~n~y~~~~k~~~---------------------------------- 423 (497)
T 2csx_A 379 AKIAQESIKNYENYMEKVNFYKAIEEIL-KFTSYLNKYVDEKQPWA---------------------------------- 423 (497)
T ss_dssp HHHHHHHHHHHHHHHTTTCHHHHHHHHH-HHHHHHHHHHHHHCHHH----------------------------------
T ss_pred HHHHHHHHHHHHHHHHccCHHHHHHHHH-HHHHHHHHHHHhcCchh----------------------------------
Confidence 9999999999999999999999999985 99999999999887521
Q ss_pred ccccchhhhhhhhhhhhhhhhhhhhhhhhhHHHhhhhhhchHHHHHHHHHHHHHHHhccchhhHHHHHHHHcCCC
Q psy5309 1446 IKETEDHYTKMLFKEALRTGFFELQAARDKYRELTAAEGGMHRTLVLRFVEVQALLLCPVCPHVAEHVYQLLGKK 1520 (1618)
Q Consensus 1446 ~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~llaPi~P~~aEeiw~~l~~~ 1520 (1618)
..+. .++.++. ....++.++|..+++|||||+||+|||+|+.|+.+
T Consensus 424 ---------------~~~~--------~~~~~~~------~~~~~~~~~l~~~~~ll~P~~P~~aeei~~~L~~~ 469 (497)
T 2csx_A 424 ---------------LNKE--------RKKEELQ------KVLYALVDGLFVLTHLLYPITPNKMKEALQMLGEK 469 (497)
T ss_dssp ---------------HHTT--------SCHHHHH------HHHHHHHHHHHHHHHHHTTTSHHHHHHHHHHTTCS
T ss_pred ---------------hccc--------ccHHHHH------HHHHHHHHHHHHHHHHhcCccCHHHHHHHHHcCCC
Confidence 0000 0001111 23346778999999999999999999999999743
No 36
>2x1l_A Methionyl-tRNA synthetase; nucleotide-binding, protein biosynthesis, ligase, aminoacyl- synthetase; HET: ADN CXS; 2.30A {Mycobacterium smegmatis} PDB: 2x1m_A*
Probab=99.93 E-value=3e-26 Score=290.57 Aligned_cols=215 Identities=23% Similarity=0.251 Sum_probs=170.4
Q ss_pred HHhCCCccccccchhhhhhhcccCCCCCCcccceeccccccccccccccccCCcCCHHHHHHhcCcceeeeehhccCCCC
Q psy5309 1206 QLLGKDLIQNHLTFFIYIHTAIWGDEPEMWPRGIRANGHLLLNSAKMSKSEGNFLTLTEAVKKFSADGMRLCLADSGDSV 1285 (1618)
Q Consensus 1206 ~~Lgkd~~svh~~~f~s~~~~~~p~~~~~~p~~v~~hGfvld~G~KMSKSlGNvI~P~~ii~~yGaD~lRl~l~~~~~~~ 1285 (1618)
+..|+|+..+|...|++.+... +..||+.+.+||||+++|+|||||+||+|+|.+++++||+|++|||+++.+++.
T Consensus 269 ~~~G~D~~~fh~~~~~a~l~~~----g~~~~~~v~~hG~v~~~G~KMSKS~GN~v~p~d~i~~~g~DalR~~ll~~~~~~ 344 (524)
T 2x1l_A 269 HMIGKDIIRFHTVYWPAFLMSA----GLPLPKRIFAHGWLLNRGEKMSKSIGNVVDPVNLVDTFGLDQVRYFLLREVPFG 344 (524)
T ss_dssp EEEEGGGHHHHHTHHHHHHHHH----TCCCCSCEEEECCEEECSCSEETTTEESSCHHHHHHHHCHHHHHHHHHHHSCTT
T ss_pred EEEeechhHhHHHHHHHHHHHC----CCCCCcEEEECcEEEeCCcccCCcCCCCCCHHHHHHHcChHHHHHHHHhcCCCC
Confidence 4468999888888887765442 346799999999999999999999999999999999999999999999977899
Q ss_pred cCcccCHHHHHHHHHHhhhhhhhhhcccCCCCcchhhHHHHHhhhhhhhhhhHHHHHHHHhhcccccCCCCCCCcchHHH
Q psy5309 1286 EDANFVESMADAAVKKFSADGMRLCLADSGDSVEDANFVESMADAGILRLYTFIEWVKEILATQSTLRTGSQDSFNDKVF 1365 (1618)
Q Consensus 1286 ~D~~fs~~~l~~~~~~~n~~~~~~~l~n~gnl~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~i 1365 (1618)
+|++||++.+.+..+. . |.|. ++|.++|+..+.. +.+++. .+........|+|+
T Consensus 345 ~d~~fs~~~l~~~~~~---~-----l~n~--l~n~~~r~~~~~~--------------~~~~~~--~~~~~~~~~~d~~l 398 (524)
T 2x1l_A 345 QDGSYNEDAIIGRVNA---D-----LANE--LGNLAQRSLSMVA--------------KNLGAA--VPDPGEFTDEDTAL 398 (524)
T ss_dssp SCEEECHHHHHHHHHH---C-----CCCC--CHHHHHHHHHHHH--------------HHSTTB--CCCCCCCCHHHHHH
T ss_pred CCCCcCHHHHHHHHHH---H-----HHHH--HHHHHHHHHHHHH--------------HhcCCC--CCCccccchhHHHH
Confidence 9999999987653322 1 2221 2222555444321 333322 22223456789999
Q ss_pred HHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHhhhhcccc-------------hhHHHHHHHHHHHHhhcCc
Q psy5309 1366 LSEMNLKIKETEDHYTKMLFKEALRTGFFELQAARDKYRELTAAEGGM-------------HRTLVLRFVEVQALLLCPV 1432 (1618)
Q Consensus 1366 l~~l~~l~~~v~~~~e~~~f~~a~~~i~~~f~~~~n~Y~~~~~~~~~~-------------~~~~~l~~~~~~a~ll~P~ 1432 (1618)
+++++++++.+.++|++|+|+.|++.++ +|+..+|.|++.++||... ..++++++++.++.||+||
T Consensus 399 ~~~l~~~~~~v~~a~~~~~~~~a~~~l~-~l~~~~n~y~~~~k~w~l~~~~~~~~~~~~~~~l~~l~~~l~~~~~ll~P~ 477 (524)
T 2x1l_A 399 LAAADALLERVREHFDVPAMHLALEAIW-SVLGAANRYFSAQEPWVLRKSDAAEDQQRFRTVLYTTLEVVRIASLLLQPV 477 (524)
T ss_dssp HHHHHTHHHHHHHHHHTTCHHHHHHHHH-HHHHHHHHHHHHHCHHHHTTCCSHHHHHHHHHHHHHHHHHHHHHHHHTTTT
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHH-HHHHHHHHHHHhcCChhhhcCccccCHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 9999999999999999999999999985 9999999999999998431 1256789999999999999
Q ss_pred chhhHHHHHHHhcccccch
Q psy5309 1433 CPHVAEHVEMNLKIKETED 1451 (1618)
Q Consensus 1433 ~P~~a~~i~~~L~~~~~~~ 1451 (1618)
||++|++||+.|+++...+
T Consensus 478 ~P~~aeei~~~L~~~~~~~ 496 (524)
T 2x1l_A 478 MPESTAKLLDLLGQPTDER 496 (524)
T ss_dssp CHHHHHHHHHHTTCCTTSC
T ss_pred hhHHHHHHHHHcCCCcccc
Confidence 9999999999999875433
No 37
>2d5b_A Methionyl-tRNA synthetase; rossmann fold, class 1A AARS, isomerase, structural genomics, NPPSFA; 1.80A {Thermus thermophilus} SCOP: a.27.1.1 c.26.1.1 PDB: 1woy_A 1a8h_A 2d54_A
Probab=99.91 E-value=3.5e-25 Score=279.47 Aligned_cols=207 Identities=21% Similarity=0.209 Sum_probs=164.9
Q ss_pred HHhCCCccccccchhhhhhhcccCCCCCCcccceeccccccc-cccccccccCCcCCHHHHHHhcCcceeeeehhccCCC
Q psy5309 1206 QLLGKDLIQNHLTFFIYIHTAIWGDEPEMWPRGIRANGHLLL-NSAKMSKSEGNFLTLTEAVKKFSADGMRLCLADSGDS 1284 (1618)
Q Consensus 1206 ~~Lgkd~~svh~~~f~s~~~~~~p~~~~~~p~~v~~hGfvld-~G~KMSKSlGNvI~P~~ii~~yGaD~lRl~l~~~~~~ 1284 (1618)
+..|+|+..+|...|++.+.+. +..||+.+++||||++ +|+|||||+||+|+|.+++++||+|++|||+++.+++
T Consensus 255 ~~~G~D~~~fh~~~~~a~~~~~----g~~~~~~v~~~G~v~~~~G~KMSKS~GN~i~p~d~i~~~g~DalR~~ll~~~~~ 330 (500)
T 2d5b_A 255 HLIGKDILKPHAVFWPTMLKAA----GIPMYRHLNVGGFLLGPDGRKMSKTLGNVVDPFALLEKYGRDALRYYLLREIPY 330 (500)
T ss_dssp EEEEGGGHHHHHTHHHHHHHHH----TCCCCSEEEEECCEECTTSSCCCTTTTCCCCHHHHHHHHCHHHHHHHHHHHSCT
T ss_pred EEEeechhhhHHHHHHHHHHHc----CCCCCcEEEECceEEeCCCCcccccCCCCCCHHHHHHhcCcHHHHHHHHhcCCc
Confidence 3458998888988888765543 3467999999999999 9999999999999999999999999999999997799
Q ss_pred CcCcccCHHHHHHHHHHhhhhhhhhhcccCCCCcchhhHHHHHhhhhhhhhhhHHHHHHHHhhcccccCCCCCCCcchHH
Q psy5309 1285 VEDANFVESMADAAVKKFSADGMRLCLADSGDSVEDANFVESMADAGILRLYTFIEWVKEILATQSTLRTGSQDSFNDKV 1364 (1618)
Q Consensus 1285 ~~D~~fs~~~l~~~~~~~n~~~~~~~l~n~gnl~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~ 1364 (1618)
.+|++||++.+.+..+. . |.|. ++|.++|...+. .+.+++. .+. ..++|
T Consensus 331 ~~d~~fs~~~~~~~~~~---~-----l~~~--l~n~~~r~~~~~--------------~~~~~~~--~~~-----~~~~~ 379 (500)
T 2d5b_A 331 GQDTPVSEEALRTRYEA---D-----LADD--LGNLVQRTRAML--------------FRFAEGR--IPE-----PVAGE 379 (500)
T ss_dssp TSCEECCHHHHHHHHHH---H-----CCCC--CHHHHHHHHHHH--------------HHHSTTB--CCC-----CCCCG
T ss_pred ccCCCCCHHHHHHHHHH---H-----HHHH--HHHHHHHHHHHH--------------HHhcCCC--CCc-----hhHHH
Confidence 99999999987664332 1 2222 222245544332 1333321 111 11488
Q ss_pred HHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHhhhhcccc---------hhHHHHHHHHHHHHhhcCcchh
Q psy5309 1365 FLSEMNLKIKETEDHYTKMLFKEALRTGFFELQAARDKYRELTAAEGGM---------HRTLVLRFVEVQALLLCPVCPH 1435 (1618)
Q Consensus 1365 il~~l~~l~~~v~~~~e~~~f~~a~~~i~~~f~~~~n~Y~~~~~~~~~~---------~~~~~l~~~~~~a~ll~P~~P~ 1435 (1618)
++++++++++++.++|++|+|++|++.++ +|+..+|+|++.++||... ..++++++++.++.+|+||||+
T Consensus 380 l~~~l~~~~~~v~~a~~~~~~~~a~~~l~-~l~~~~n~y~~~~k~w~~~~~~~~~~~~~~~~l~~~l~~~~~ll~P~~P~ 458 (500)
T 2d5b_A 380 ELAEGTGLAGRLRPLVRELKFHVALEEAM-AYVKALNRYINEKKPWELFKKEPEEARAVLYRVVEGLRIASILLTPAMPD 458 (500)
T ss_dssp GGGGGGGHHHHHHHHHHTTCHHHHHHHHH-HHHHHHHHHHHHHCHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHTTTSHH
T ss_pred HHHHHHHHHHHHHHHHHccCHHHHHHHHH-HHHHHHHHHHHhcCchhhccCcHHHHHHHHHHHHHHHHHHHHHhhCcccH
Confidence 99999999999999999999999999985 9999999999999988531 2367889999999999999999
Q ss_pred hHHHHHHHhcccc
Q psy5309 1436 VAEHVEMNLKIKE 1448 (1618)
Q Consensus 1436 ~a~~i~~~L~~~~ 1448 (1618)
+|++||+.|+.+.
T Consensus 459 ~aeei~~~l~~~~ 471 (500)
T 2d5b_A 459 KMAELRRALGLKE 471 (500)
T ss_dssp HHHHHHHHTTCCS
T ss_pred HHHHHHHHcCCCc
Confidence 9999999999864
No 38
>3fnr_A Arginyl-tRNA synthetase; transferase, PSI-2, NYSGXRC, struc genomics, protein structure initiative; 2.20A {Campylobacter jejuni}
Probab=99.89 E-value=4.1e-22 Score=244.95 Aligned_cols=160 Identities=18% Similarity=0.233 Sum_probs=121.8
Q ss_pred CCCCeEEeCCCCCCCCcchhhhhchhhhhHHHHHHHHHcCCcccccccccCCChhhHHHHHHH-HHHHH-hcCCCCCCCC
Q psy5309 86 PDDKFFTTFPFPYMNGRLHLGHTFSLSKCEFSVRFNRLKGKRVLFPFGFHCTGMPIKACADKL-KREME-SFGFPPQFPS 163 (1618)
Q Consensus 86 ~~~~f~v~~ppP~~nG~LHiGHa~~~~~~D~~aR~~rm~G~~V~~~~G~d~~G~pIe~~a~k~-~~~~~-~~gi~~~~~e 163 (1618)
.+++.+|.+.+|||||+|||||+|+.+++|+++|++++.||+|...+++++.|.|+..++.++ .++.+ ..|.+..+|+
T Consensus 28 ~~~~v~vE~ss~n~~~~~h~gh~r~~~~gd~~~r~~~~~G~~v~r~nyi~D~G~Q~g~l~~~~~~~y~~~~~~~~~~~p~ 107 (464)
T 3fnr_A 28 KQESFLLEYVSANPTGPLHIGHARGAVFGDTLTRLARHLGYKFNTEYYVNDAGNQIYLLGLSILLSVKESILHENVEYPE 107 (464)
T ss_dssp CSCEEEEECCCCCSSSSCBGGGHHHHHHHHHHHHHHHHTTCEEEEEEEECCCHHHHHHHHHHHHHHHHHHTSCCCCCCCS
T ss_pred CCCEEEEEeCCCCCCCCCccchhHHHHHHHHHHHHHHHcCCceEEEeeeCCccHHHHHHHHHHHHHHHHHhcCCCCCCch
Confidence 467899999999999999999999999999999999999999999999999999999998876 33333 3444433444
Q ss_pred CCCCCCCCCCCCCchhcccccCcchHHHHHhhhhHHHHHHHHhcCCCHHHHHHHhhhhhHHhhchhHHHHHHHHcCCccc
Q psy5309 164 EDTEPQTDKDDDDPVIKDKSKGKKSKAVAKAGSAKYQWQIMQSLGLEDDEIRKFADASHWLDHFPPLAVQDLRSIGIHVD 243 (1618)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~ak~~~~~~~~~~~~~~g~~~~e~~~f~~~~~~~~~~~~~~~~~l~~lGi~~D 243 (1618)
+ .|+|.+..++|+....++..++. .+++...|. ....+..++.+++++++||+.+|
T Consensus 108 ~-----------------~y~g~~~~~~a~~~~~~~~~~~~-----~~~~~~~~~--~~~~~~~l~~~~~~~~~l~V~fD 163 (464)
T 3fnr_A 108 Q-----------------YYKGEYIVDLAKEAFEKFGKEFF-----SEENIPSLA--DWAKDKMLVLIKQNLEQAKIKID 163 (464)
T ss_dssp S-----------------CCCSHHHHHHHHHHHHHHCGGGC-----SGGGHHHHH--HHHHHHHHHHHHHHHHHTTCCCS
T ss_pred h-----------------hcCccHHHHHHHHHHHhcchhhc-----CcHHHHHHH--HHHHHHHHHHHHHHHHHhCCCce
Confidence 3 68899999888776655311110 122222332 23356678899999999999999
Q ss_pred -ccCceeecCCChhhhHHHHHHHHHHHhcCcccc
Q psy5309 244 -WRRTFITTDSNPFFDSFVRWQFMRLRDRHKIKY 276 (1618)
Q Consensus 244 -w~~~~~T~d~~p~y~~~v~~~f~~L~~kG~iy~ 276 (1618)
|..|- ..|. .+..++..|.++|++|+
T Consensus 164 ~~~~Es------s~~~-~~~~vv~~L~~~g~~~e 190 (464)
T 3fnr_A 164 SYVSER------SYYD-ALNATLESLKEHKGIYE 190 (464)
T ss_dssp CEEEGG------GGST-THHHHHHHHHHTTCEEE
T ss_pred eecCHH------HHHH-HHHHHHHHHHHCCCEEE
Confidence 54442 2244 78999999999999985
No 39
>1iq0_A Arginyl-tRNA synthetase; riken structural genomics/proteomics initiative, RSGI, structural genomics, ligase; 2.30A {Thermus thermophilus} SCOP: a.27.1.1 c.26.1.1 d.67.2.1
Probab=99.80 E-value=6.8e-19 Score=224.60 Aligned_cols=136 Identities=12% Similarity=0.091 Sum_probs=106.1
Q ss_pred EEEEccceeeCCccceeccCcccChHHHHhh-------------------------cCccceEEeecccCcccccccccH
Q psy5309 1035 GIRANGHLLLNSAKMSKSEGNFLTLTEAVKK-------------------------FSADGMRLCLADSGDSVEDANFVE 1089 (1618)
Q Consensus 1035 ~v~~hG~vl~~G~KMSKS~GNvV~p~eii~~-------------------------yGaDalRl~l~~~~~~~~D~~fs~ 1089 (1618)
..+.||||+.+|+|||||+||+|++.+++++ +|.|++|||+++. .+.+|++|++
T Consensus 381 ~H~~~g~v~~~g~KMSKr~Gn~v~l~dll~~~~~~~~~~~~~~~~~~~~~e~~a~~vg~~aiRyf~L~~-~~~~~~~Fd~ 459 (592)
T 1iq0_A 381 HHLAYETVLLEGRQMSGRKGLAVSVDEVLEEATRRARAIVEEKNPDHPDKEEAARMVALGAIRFSMVKT-EPKKQIDFRY 459 (592)
T ss_dssp EEEEECCEEETTBCSCC----CCBHHHHHHHHHHHHHHHHHHHCTTCSCHHHHHHHHHHHHHHHHHHHS-CTTSCEEECH
T ss_pred EEEEeeEEEcCCCcccCCCCCccCHHHHHHHHHHHHHHHHHhhCCCCCcHHHHHHhhcHHHHHHHHHhc-CCCCCCeecH
Confidence 3567899999999999999999999999999 9999999999987 5689999999
Q ss_pred HHHHHHH----hhHHHHHHHHHHHHHhcccCCCCC--CCCcchHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHH
Q psy5309 1090 SMADAGI----LRLYTFIEWVKEILATQSTLRTGS--QDSFNDKVFLSEMNLKIKETEDHYTKMLFKEALRTGFFELQAA 1163 (1618)
Q Consensus 1090 ~~~~~~~----~kl~N~~~~l~~~l~~~~~~~~~~--~~~~~D~~~l~~l~~~i~~v~~~~e~~~f~~al~~~~~~l~~~ 1163 (1618)
+.+.+.. ..+.+...|+.+++.+........ .....+..++..+..+.+.+.+++++++++.++.. ++++...
T Consensus 460 d~~~~~~~~~~~ylqya~aR~~sil~k~~~~~~~~~~l~~~~e~~L~~~l~~~~~~v~~a~~~~~p~~~~~y-l~~La~~ 538 (592)
T 1iq0_A 460 QEALSFEGDTGPYVQYAHARAHSILRKAGEWGAPDLSQATPYERALALDLLDFEEAVLEAAEERTPHVLAQY-LLDLAAS 538 (592)
T ss_dssp HHHHCSSSSSHHHHHHHHHHHHHHHHHHCCCCCCCGGGCCHHHHHHHHHHTTHHHHHHHHHHHTCHHHHHHH-HHHHHHH
T ss_pred HHHHHHhccchHHHHHHHHHHHHHHHhhcccCCCccCCCCHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHH-HHHHHHH
Confidence 9875432 255556678888877643111000 11334667888899999999999999999999998 7999999
Q ss_pred HHHHHHHhc
Q psy5309 1164 RDKYRELTA 1172 (1618)
Q Consensus 1164 ~n~Yi~~~k 1172 (1618)
.|.|.+.++
T Consensus 539 fn~fy~~~~ 547 (592)
T 1iq0_A 539 WNAYYNARE 547 (592)
T ss_dssp HHHHHHCEE
T ss_pred HHHHHHhcc
Confidence 999999884
No 40
>2zue_A Arginyl-tRNA synthetase; aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase, nucleotide-binding, protein biosynthesis, ligase/RNA complex; HET: ANP; 2.00A {Pyrococcus horikoshii} PDB: 2zuf_A
Probab=99.76 E-value=2.3e-17 Score=210.93 Aligned_cols=136 Identities=13% Similarity=-0.043 Sum_probs=107.0
Q ss_pred EEEEccceeeCCccceeccC--cccChHHHHhh---------------------------cCccceEEeecccCcccccc
Q psy5309 1035 GIRANGHLLLNSAKMSKSEG--NFLTLTEAVKK---------------------------FSADGMRLCLADSGDSVEDA 1085 (1618)
Q Consensus 1035 ~v~~hG~vl~~G~KMSKS~G--NvV~p~eii~~---------------------------yGaDalRl~l~~~~~~~~D~ 1085 (1618)
..+.||+|+.+|+|||||+| |+|++.+++++ +|.|++||++++. .+.+|+
T Consensus 411 ~h~~~g~V~~~~~KMSkr~G~~n~v~l~dLl~e~~~~a~~~~~~~~~~~~~~~~~~~a~~vg~~AvRy~~L~~-~~~~~~ 489 (629)
T 2zue_A 411 YHLAYEHVERPEGKFSGRKGTWVGFTVDEVIQEAVKRARELIEEKNPALSDEEKAEVAEKVGIGAIRYNLIKY-SPDKKI 489 (629)
T ss_dssp EEEEECCEEBTTBCCCTTTTTTTTCBHHHHHHHHHHHHHHHHHHHCTTSCHHHHHHHHHHHHHHHHHHHHHSS-CTTSCE
T ss_pred EEEEeeeEEcCCCcccCCCCCCCeeeHHHHHHHHHHHHHHHHHhcCcccchhhHHHHHHhcChhHhhHHHHhc-CCCCCC
Confidence 46778999999999999999 99999999999 9999999999987 678999
Q ss_pred cccHHHHHHH----HhhHHHHHHHHHHHHHhcccCC------------CCCCCCcchHHHHHHHHHHHHHHHHHHhhccH
Q psy5309 1086 NFVESMADAG----ILRLYTFIEWVKEILATQSTLR------------TGSQDSFNDKVFLSEMNLKIKETEDHYTKMLF 1149 (1618)
Q Consensus 1086 ~fs~~~~~~~----~~kl~N~~~~l~~~l~~~~~~~------------~~~~~~~~D~~~l~~l~~~i~~v~~~~e~~~f 1149 (1618)
+|+++.+.+. ..-+.+...|+.+++.+..... ........+..++..+..+.+.+.++++++++
T Consensus 490 ~Fd~d~~~~~~~~t~~ylqYa~aRi~Silrka~~~~~~~~~~~~~~~~~~~l~~~~e~~L~~~l~~fp~~v~~a~~~~~p 569 (629)
T 2zue_A 490 IFRWEDVLNFEGESAPYIQYAHARCSSILRKAEEEGIKVDPETLFKNADFTKLSERERELVIMLSKFPRIVEQAGKDVKP 569 (629)
T ss_dssp ECCHHHHSCCSSSSHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHCCCSSCCHHHHHHHHHHHHHHHHHHHHHHTTCT
T ss_pred eecHHHHHHHhcCchHHHHHHHHHHHHHHHhhhccccccccccccccccccCCCHHHHHHHHHHHHHHHHHHHHHHhCCH
Confidence 9999876421 2234455566666665421100 01112345677889999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhc
Q psy5309 1150 KEALRTGFFELQAARDKYRELTA 1172 (1618)
Q Consensus 1150 ~~al~~~~~~l~~~~n~Yi~~~k 1172 (1618)
+.++.. ++++....|.|.+.+.
T Consensus 570 ~~l~~y-l~~La~~fn~fy~~~~ 591 (629)
T 2zue_A 570 HLIAWF-ANELASLFNKFYMDHP 591 (629)
T ss_dssp HHHHHH-HHHHHHHHHHHHHHCC
T ss_pred HHHHHH-HHHHHHHHHHHHHhcc
Confidence 999998 7899999999988764
No 41
>1wny_A Isoleucyl-tRNA synthetase; ligase, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.60A {Thermus thermophilus} PDB: 1wnz_A* 1wk8_A* 1udz_A 1ue0_A
Probab=99.73 E-value=1.2e-18 Score=189.62 Aligned_cols=33 Identities=30% Similarity=0.372 Sum_probs=30.6
Q ss_pred CcEEEEeecCccccccCceEEeCCCCCceeecc
Q psy5309 329 PVFLVAATLRPETMYGQTNAWVRPDMAYIALSC 361 (1618)
Q Consensus 329 ~~~l~i~TTrPeTl~g~~avaV~P~~~Y~~~~~ 361 (1618)
+.+|+||||||||||||+||||||++.|+.+..
T Consensus 22 ~~~l~i~TTrP~Tl~g~~aiav~p~~~y~~~~~ 54 (186)
T 1wny_A 22 KASLLIWTTTPWTLPGNVAAAVHPEYTYAAFQV 54 (186)
T ss_dssp SEEEEEEESCGGGGGGCCEEEECTTSEEEEEEE
T ss_pred CcEEEEEECCcchhhcceEEEECCCCcEEEEEe
Confidence 468999999999999999999999999998854
No 42
>1wka_A Valyl-tRNA synthetase; editing, CP1, fidelity, thermus thrmophilus, translation, amino acid, structural genomics; 1.70A {Thermus thermophilus} SCOP: b.51.1.1 PDB: 1wk9_A*
Probab=99.63 E-value=4.8e-16 Score=162.26 Aligned_cols=26 Identities=35% Similarity=0.539 Sum_probs=24.4
Q ss_pred CcEEEEeecCccccccCceEEeCCCC
Q psy5309 329 PVFLVAATLRPETMYGQTNAWVRPDM 354 (1618)
Q Consensus 329 ~~~l~i~TTrPeTl~g~~avaV~P~~ 354 (1618)
+.+|+|||||||||+||+||||||++
T Consensus 16 ~~~l~i~TTrP~Tl~g~~aiav~P~~ 41 (147)
T 1wka_A 16 GGFIEIATVRPETVFADQAIAVHPED 41 (147)
T ss_dssp SCEEEEEESCGGGGGGCCEEEECTTC
T ss_pred CcEEEEEECCceecccceEEEECCCC
Confidence 46899999999999999999999996
No 43
>3o0a_A Leucyl-tRNA synthetase subunit alpha; CP1 hydrolytic DOM ligase, aminoacyl-tRNA synthetase, ATP-binding, nucleotide- protein biosynthesis; 1.77A {Aquifex aeolicus} PDB: 3pz0_A 3pz5_A
Probab=99.62 E-value=3.7e-17 Score=181.47 Aligned_cols=31 Identities=23% Similarity=0.519 Sum_probs=29.2
Q ss_pred cEEEEeecCccccccCceEEeCCCCCceeec
Q psy5309 330 VFLVAATLRPETMYGQTNAWVRPDMAYIALS 360 (1618)
Q Consensus 330 ~~l~i~TTrPeTl~g~~avaV~P~~~Y~~~~ 360 (1618)
.+|+||||||||||||++|||||++.|+.+.
T Consensus 38 ~~l~vwTTtPwTL~gn~~iav~pe~~yv~~~ 68 (219)
T 3o0a_A 38 IYIDVFTTRPDTVFGATFVVLAPEHPLVPVL 68 (219)
T ss_dssp EEEEEEESCGGGGGGCCEEEECTTCTHHHHH
T ss_pred CEEEEEECCcchhhcccEEEECCCCcEEEEE
Confidence 6899999999999999999999999999874
No 44
>2ajg_A Leucyl-tRNA synthetase; editing domain, ligase; 2.00A {Escherichia coli} PDB: 2ajh_A 2aji_A
Probab=99.61 E-value=1.6e-16 Score=174.38 Aligned_cols=33 Identities=24% Similarity=0.159 Sum_probs=30.0
Q ss_pred CCcEEEEeecCccccccCceEEeCCCCCceeec
Q psy5309 328 KPVFLVAATLRPETMYGQTNAWVRPDMAYIALS 360 (1618)
Q Consensus 328 ~~~~l~i~TTrPeTl~g~~avaV~P~~~Y~~~~ 360 (1618)
.+.+|+||||||||||||+||||||++.|+.+.
T Consensus 22 ~~~~l~i~TTrP~TL~g~~avav~P~~~yv~~~ 54 (196)
T 2ajg_A 22 YDNTLTVYTTRPDTFMGCTYLAVAAGHPLAQKA 54 (196)
T ss_dssp CSSEEEEEESCGGGGGGCCEEEECTTSHHHHHH
T ss_pred CCcEEEEEECChhhhcCccEEEECCCCcEEEEE
Confidence 356999999999999999999999999998863
No 45
>1li5_A Cysrs, cysteinyl-tRNA synthetase, transfer RNA-Cys; cysteine, E.coli, ligase; 2.30A {Escherichia coli} SCOP: a.27.1.1 c.26.1.1 PDB: 1li7_A 1u0b_B
Probab=99.57 E-value=1.4e-15 Score=188.13 Aligned_cols=146 Identities=19% Similarity=0.188 Sum_probs=114.4
Q ss_pred hCCCccccccchhhhhhhcccCCCCCCcccceeccccccccccccccccCCcCCHHHHHHhcCcceeeeehhccCCCCcC
Q psy5309 1208 LGKDLIQNHLTFFIYIHTAIWGDEPEMWPRGIRANGHLLLNSAKMSKSEGNFLTLTEAVKKFSADGMRLCLADSGDSVED 1287 (1618)
Q Consensus 1208 Lgkd~~svh~~~f~s~~~~~~p~~~~~~p~~v~~hGfvld~G~KMSKSlGNvI~P~~ii~~yGaD~lRl~l~~~~~~~~D 1287 (1618)
.|+|+..+|...++..+.+.. +.++++.+.+|||++++|+|||||+||+|+|.+++++||+|++|||+++. ++.+|
T Consensus 226 gG~Dl~fpH~~~~~aq~~a~~---g~~~~~~~~h~g~v~~~G~KMSKS~GN~v~~~dll~~~g~dalR~~ll~~-~~~~~ 301 (461)
T 1li5_A 226 GGSDLMFPHHENEIAQSTCAH---DGQYVNYWMHSGMVMVDREKMSKSLGNFFTVRDVLKYYDAETVRYFLMSG-HYRSQ 301 (461)
T ss_dssp CBGGGTTTHHHHHHHHHHHHS---SSCCEEEECCBCCEEETTBCCCGGGTCCCBHHHHHTTSCHHHHHHHHHSS-CTTSC
T ss_pred ccCccCchHHHHHHHHHHHhc---CCCCCcEEEEeeEEEECCeEccccCCCccChhHHhhhCCHHHHHHHHHcC-CcCCC
Confidence 489999899888887655543 33567778888999999999999999999999999999999999999985 88999
Q ss_pred cccCHHHHHHHHHHhhhhhhhhhcccCCCCcchhhHHHHHhhhhhhhhhhHHHHHHHHhhcccccCCCCCCCcchHHHHH
Q psy5309 1288 ANFVESMADAAVKKFSADGMRLCLADSGDSVEDANFVESMADAGILRLYTFIEWVKEILATQSTLRTGSQDSFNDKVFLS 1367 (1618)
Q Consensus 1288 ~~fs~~~l~~~~~~~n~~~~~~~l~n~gnl~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~il~ 1367 (1618)
++||++.+.+..+.++. +.+.+.+ .+. ..+ . |
T Consensus 302 ~~fs~~~l~~~~~~l~r--l~n~~~~--------------------------------~~~--~~~------~-d----- 333 (461)
T 1li5_A 302 LNYSEENLKQARAALER--LYTALRG--------------------------------TDK--TVA------P-A----- 333 (461)
T ss_dssp EEECHHHHHHHHHHHHH--HHHHHTT--------------------------------CCT--TSC------C-C-----
T ss_pred CCCCHHHHHHHHHHHHH--HHHHHHH--------------------------------hhc--CCC------H-H-----
Confidence 99999988886655541 1121111 010 011 1 2
Q ss_pred HHHHHHHHHHHHH-hcccHHHHHHHHHHHHHHHHHHHHHh
Q psy5309 1368 EMNLKIKETEDHY-TKMLFKEALRTGFFELQAARDKYREL 1406 (1618)
Q Consensus 1368 ~l~~l~~~v~~~~-e~~~f~~a~~~i~~~f~~~~n~Y~~~ 1406 (1618)
++..+.+.+.++| |+|+++.|++.++ +++...|.|++.
T Consensus 334 ~l~~~~~~~~~am~dd~n~~~Al~~l~-~l~~~~N~~~~~ 372 (461)
T 1li5_A 334 GGEAFEARFIEAMDDDFNTPEAYSVLF-DMAREVNRLKAE 372 (461)
T ss_dssp SCHHHHHHHHHHHHBTSCHHHHHHHHH-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccCHHHHHHHHH-HHHHHHHHHHhc
Confidence 3567888999999 9999999999985 999999999853
No 46
>3c8z_A Cysteinyl-tRNA synthetase; cysteine ligase, rossmann fold, Cys-SA inhibitor, zinc binding, ATP-binding, aminoacyl-tRNA synthetase; HET: 5CA 1PE EPE; 1.60A {Mycobacterium smegmatis}
Probab=99.57 E-value=1.1e-15 Score=187.31 Aligned_cols=139 Identities=19% Similarity=0.138 Sum_probs=97.8
Q ss_pred HhCCCccccccchhhhhhhcccCCCCCCcccceecc-ccccccccccccccCCcCCHHHHHHh-cCcceeeeehhccCCC
Q psy5309 1207 LLGKDLIQNHLTFFIYIHTAIWGDEPEMWPRGIRAN-GHLLLNSAKMSKSEGNFLTLTEAVKK-FSADGMRLCLADSGDS 1284 (1618)
Q Consensus 1207 ~Lgkd~~svh~~~f~s~~~~~~p~~~~~~p~~v~~h-Gfvld~G~KMSKSlGNvI~P~~ii~~-yGaD~lRl~l~~~~~~ 1284 (1618)
..|+|+..+|...++..+.+..+ ..+|..+.+| ||++++|+|||||+||+|+|.+++++ ||+|++|||+++ +++
T Consensus 249 ~~G~D~~~~H~~~~~a~~~a~~g---~~~~~~~~~h~g~v~~~G~KMSKS~GN~v~~~~ll~~g~g~D~lR~~ll~-~~~ 324 (414)
T 3c8z_A 249 GGGSDLIFPHHEYSAAHAESVTG---ERRFARHYVHTGMIGWDGHKMSKSRGNLVLVSQLRAQGVDPSAIRLGLFS-GHY 324 (414)
T ss_dssp EEEGGGTTTHHHHHHHHHHHHHC---CSCSEEEEEEECCBC-------------CBHHHHHHTTCCHHHHHHHHHT-SCT
T ss_pred EeccccccHHHHHHHHHHHHhcC---CCCcCeEEEEcCEEecCCeEcccccCCcCCHHHHhhccCCcchheeEEEe-cCc
Confidence 35899999999999877666542 3467888888 89999999999999999999999999 999999999999 689
Q ss_pred CcCcccCHHHHHHHHHHhhhhhhhhhcccCCCCcchhhHHHHHhhhhhhhhhhHHHHHHHHhhcccccCCCCCCCcchHH
Q psy5309 1285 VEDANFVESMADAAVKKFSADGMRLCLADSGDSVEDANFVESMADAGILRLYTFIEWVKEILATQSTLRTGSQDSFNDKV 1364 (1618)
Q Consensus 1285 ~~D~~fs~~~l~~~~~~~n~~~~~~~l~n~gnl~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~ 1364 (1618)
.+|++||++.+.+..+.++.. +++ ++ . .++ +
T Consensus 325 ~~d~~fs~~~l~~~~~~l~~l--~n~----------------------------~~---~-~~~----~----------- 355 (414)
T 3c8z_A 325 REDRFWSNEVLDEANARLARW--RSA----------------------------TA---L-PEA----P----------- 355 (414)
T ss_dssp TSCBCCCHHHHHHHHHHHHHH--HHH----------------------------HT---S-SCB----S-----------
T ss_pred CCCCCcCHHHHHHHHHHHHHH--HHH----------------------------HH---h-ccc----h-----------
Confidence 999999999988866655421 111 10 0 000 0
Q ss_pred HHHHHHHHHHHHHHHH-hcccHHHHHHHHHHHHHHHHHH
Q psy5309 1365 FLSEMNLKIKETEDHY-TKMLFKEALRTGFFELQAARDK 1402 (1618)
Q Consensus 1365 il~~l~~l~~~v~~~~-e~~~f~~a~~~i~~~f~~~~n~ 1402 (1618)
.++++.+++.++| |+|+|++|+++++ +|++..|.
T Consensus 356 ---~~~~~~~~v~~a~~d~~~~~~Al~~i~-~~~~~~n~ 390 (414)
T 3c8z_A 356 ---DATDVIARVRQYLADDLDTPKALAALD-GWCTDALS 390 (414)
T ss_dssp ---CCHHHHHHHHHHHHBTCCHHHHHHHHH-HHHHHHHH
T ss_pred ---hHHHHHHHHHHHHHhcCCHHHHHHHHH-HHHHHHHh
Confidence 1256788999999 8999999999985 99987776
No 47
>3sp1_A Cysteinyl-tRNA synthetase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, LYME disease; HET: AMP; 2.55A {Borrelia burgdorferi}
Probab=99.45 E-value=4.1e-14 Score=173.62 Aligned_cols=150 Identities=19% Similarity=0.146 Sum_probs=98.9
Q ss_pred HhCCCccccccchhhhhhhcccCCCCCCcccceecc-ccccccccccccccCCcCCHHHHHHh-cCcceeeeehhccCCC
Q psy5309 1207 LLGKDLIQNHLTFFIYIHTAIWGDEPEMWPRGIRAN-GHLLLNSAKMSKSEGNFLTLTEAVKK-FSADGMRLCLADSGDS 1284 (1618)
Q Consensus 1207 ~Lgkd~~svh~~~f~s~~~~~~p~~~~~~p~~v~~h-Gfvld~G~KMSKSlGNvI~P~~ii~~-yGaD~lRl~l~~~~~~ 1284 (1618)
..|+|+..+|...++..+.+..+ .++..+.+| |||+.+|+|||||+||+|+|.+++++ ||+|++|||+++. ++
T Consensus 258 ~gG~DLifpHheneiAqs~a~~g----~~~~~~w~H~g~v~~~G~KMSKSlGN~it~~dll~~gyg~d~lR~~lls~-~y 332 (501)
T 3sp1_A 258 LGGVDHIGVHHINEIAIAECFLN----KKWCDVFVHGEFLIMDYNKMSKSRGNFITVKDLEDQNFSPLDFRYLCLTS-HY 332 (501)
T ss_dssp EEEGGGTTTHHHHHHHHHHHHHT----SCCCSEEEEECCEECC----------CCCHHHHHHTTCCHHHHHHHHHTS-CT
T ss_pred eeccccccchHHHHHHHHHHccC----CCCCeEEEEeeeEeeCCeEccccCCCcCCHHHHHhcCCCHHHHHHHHHhc-cC
Confidence 34889999999888877776654 256777777 99999999999999999999999999 9999999999998 88
Q ss_pred CcCcccCHHHHHHHHHH----hhhhhhhhhcccCCCCcchhhHHHHHhhhhhhhhhhHHHHHHHHhhcccccCCCCCCCc
Q psy5309 1285 VEDANFVESMADAAVKK----FSADGMRLCLADSGDSVEDANFVESMADAGILRLYTFIEWVKEILATQSTLRTGSQDSF 1360 (1618)
Q Consensus 1285 ~~D~~fs~~~l~~~~~~----~n~~~~~~~l~n~gnl~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1360 (1618)
.+|++||++.+++..+. ++ ++++.+.++. .. ........ ... .
T Consensus 333 r~~l~fs~~~l~~a~~~~~~ll~--rl~~~~~~~~---------------------~~---~~~~~~~~-----~~~--~ 379 (501)
T 3sp1_A 333 RNQLKFSLDNLQASKIARENLIN--KLSYFYESLD---------------------PV---DLNTLNKD-----LKN--F 379 (501)
T ss_dssp TSCEECCHHHHHHHHHHHHHHHH--HHHHHHHTCC---------------------HH---HHHHHHSC-----TTS--C
T ss_pred CCCCccCHHHHHHHHHhhHHHHH--HHHHHHHHHH---------------------hh---hccccccc-----ccc--h
Confidence 99999999999987777 55 2223222211 00 00000000 000 0
Q ss_pred chHHHHHHHHHHHHHHHHHH-hcccHHHHHHHHHHHHHHH
Q psy5309 1361 NDKVFLSEMNLKIKETEDHY-TKMLFKEALRTGFFELQAA 1399 (1618)
Q Consensus 1361 ~D~~il~~l~~l~~~v~~~~-e~~~f~~a~~~i~~~f~~~ 1399 (1618)
+ ...+..+.+.+.++| |+++.+.|+..++ +++..
T Consensus 380 -~---~~~~~~~~~~f~~am~dDlnt~~al~~l~-~~~~~ 414 (501)
T 3sp1_A 380 -G---FSVEKEYYDSFVEKISFDLNVAQGLALLW-EIIKS 414 (501)
T ss_dssp -S---SHHHHHHHHHHHHHHHBTSCHHHHHHHHH-HHHHC
T ss_pred -h---hhhHHHHHHHHHHHHHhccCcHHHHHHHH-HHHHH
Confidence 1 123456778899999 5899999999985 77653
No 48
>3tqo_A Cysteinyl-tRNA synthetase; protein synthesis, ligase; 2.30A {Coxiella burnetii}
Probab=99.35 E-value=7.9e-13 Score=161.73 Aligned_cols=126 Identities=17% Similarity=0.112 Sum_probs=106.6
Q ss_pred CeEEeCCCCCCCCcchhhhhchhhhhHHHHHHHHHcCCcccccccccCCChhhHHHHHHHHHHHHhcCCCCCCCCCCCCC
Q psy5309 89 KFFTTFPFPYMNGRLHLGHTFSLSKCEFSVRFNRLKGKRVLFPFGFHCTGMPIKACADKLKREMESFGFPPQFPSEDTEP 168 (1618)
Q Consensus 89 ~f~v~~ppP~~nG~LHiGHa~~~~~~D~~aR~~rm~G~~V~~~~G~d~~G~pIe~~a~k~~~~~~~~gi~~~~~e~~~~~ 168 (1618)
+..+....|+|+|.+||||+|++++.|+++||+||+||+|.++.|+|++|.+|+..|++ .|
T Consensus 25 ~v~~YvcGPtvy~~~HIGHaR~~v~~Dvl~R~lr~~Gy~V~~v~n~dD~ddKIi~~A~~-------~g------------ 85 (462)
T 3tqo_A 25 KVKLYVCGMTVYDYMHIGHGRSWIIFDMVVRYLRMRGYEVTFVRNITDIDDKIIKRAGE-------NK------------ 85 (462)
T ss_dssp EEEEEECCCBTTSCCBHHHHHHHHHHHHHHHHHHHTTCEEEEEECBBCCCHHHHHHHHH-------TT------------
T ss_pred eEEEEeCCCcCCCCCchhhhHHHHHHHHHHHHHHHcCCceEEecCcCCCCcHHHHHHHH-------cC------------
Confidence 34555567899999999999999999999999999999999999999999999987764 11
Q ss_pred CCCCCCCCchhcccccCcchHHHHHhhhhHHHHHHHHhcCCCHHHHHHHhhhhhHHhhchhHHHHHHHHcCCcccccCce
Q psy5309 169 QTDKDDDDPVIKDKSKGKKSKAVAKAGSAKYQWQIMQSLGLEDDEIRKFADASHWLDHFPPLAVQDLRSIGIHVDWRRTF 248 (1618)
Q Consensus 169 ~~~~~~~~~~~~~~~~g~~~~~~ak~~~~~~~~~~~~~~g~~~~e~~~f~~~~~~~~~~~~~~~~~l~~lGi~~Dw~~~~ 248 (1618)
. ++.++++++.+.+++++++||+..|+..+.
T Consensus 86 ----------------------------------------~---------~~~e~a~~~~~~f~~d~~~LgI~~d~~~pr 116 (462)
T 3tqo_A 86 ----------------------------------------E---------SPAALAERFIQILHEDEKALRVLSPDQEPR 116 (462)
T ss_dssp ----------------------------------------S---------CHHHHHHHHHHHHHHHHHHHTCCCCSBCCB
T ss_pred ----------------------------------------C---------CHHHHHHHHHHHHHHHHHHcCCCCCccccC
Confidence 1 135667888889999999999999977655
Q ss_pred eecCCChhhhHHHHHHHHHHHhcCccccC-ceeEEEecCC
Q psy5309 249 ITTDSNPFFDSFVRWQFMRLRDRHKIKYG-KRYTVFSPRD 287 (1618)
Q Consensus 249 ~T~d~~p~y~~~v~~~f~~L~~kG~iy~g-~~~v~w~p~~ 287 (1618)
.| .|...++++|.+|.++|++|++ ...|+||+.+
T Consensus 117 aT-----e~i~~i~~~i~~L~ekG~aY~~~~g~Vyfdv~~ 151 (462)
T 3tqo_A 117 AT-----QYVPEIIKLIQKLLDNQYAYTGQNGDVFFDVRR 151 (462)
T ss_dssp GG-----GCHHHHHHHHHHHHHHTSEEECTTSCEEECTTT
T ss_pred hh-----hHHHHHHHHHHHHHHCCCEEEecCCcEEecccc
Confidence 43 3888999999999999999998 5778888764
No 49
>3fnr_A Arginyl-tRNA synthetase; transferase, PSI-2, NYSGXRC, struc genomics, protein structure initiative; 2.20A {Campylobacter jejuni}
Probab=99.35 E-value=1e-12 Score=161.67 Aligned_cols=167 Identities=15% Similarity=0.111 Sum_probs=109.3
Q ss_pred cccchhhhhhhcccCCCCCCccc-ceeccccc-cc-ccc--ccccccCCcCCHHHHHHhcCcceeeeehhccCCCCcCcc
Q psy5309 1215 NHLTFFIYIHTAIWGDEPEMWPR-GIRANGHL-LL-NSA--KMSKSEGNFLTLTEAVKKFSADGMRLCLADSGDSVEDAN 1289 (1618)
Q Consensus 1215 vh~~~f~s~~~~~~p~~~~~~p~-~v~~hGfv-ld-~G~--KMSKSlGNvI~P~~ii~~yGaD~lRl~l~~~~~~~~D~~ 1289 (1618)
.|.+||+.+.... ...+..|++ .++.|||| ++ +|+ |||||+||+|+|.++++++|+|++|||+++. .+.+|++
T Consensus 245 dq~~~f~~l~~~l-~~lG~~~~~~~h~~~g~V~l~~dG~~~KMSKr~Gn~v~l~dll~~~g~dalRy~~l~~-~~~~d~~ 322 (464)
T 3fnr_A 245 DHHGYIPRMKAAM-EFLGFDSNNLEIILAQMVSLLKDGEPYKMSKRAGNFILMSDVVDEIGSDALRYIFLSK-KCDTHLE 322 (464)
T ss_dssp GGGGGHHHHHHHH-HTTTCCGGGEEEEEECCEEEEETTEECCC---CCSSCBHHHHHHHHCHHHHHHHTTSS-CTTSCEE
T ss_pred cHHHHHHHHHHHH-HHcCCCccceEEEEeeeEEecCCCcccCCcCcCCCCCCHHHHHhhccHHHHHHHHHhc-CCCCCCc
Confidence 4667787643222 222334454 56789999 44 665 9999999999999999999999999999998 6689999
Q ss_pred cCHHHHHHHHHHhhhhhhhhhcccCCCCcchhhHHHHHhhhhhhhhhhHHHHHHHHhhcccccC--CCCCCCcchHHHHH
Q psy5309 1290 FVESMADAAVKKFSADGMRLCLADSGDSVEDANFVESMADAGILRLYTFIEWVKEILATQSTLR--TGSQDSFNDKVFLS 1367 (1618)
Q Consensus 1290 fs~~~l~~~~~~~n~~~~~~~l~n~gnl~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~D~~il~ 1367 (1618)
||++.+... .| +|. + +....+ ..|+.++++ +........+ ....+...|++++.
T Consensus 323 Fd~~~~~~~-------------~n-~np---v-~YlqYa---~aRi~silr---k~~~~~~~~~~~~~~~L~~~e~~Ll~ 378 (464)
T 3fnr_A 323 FDISDLQKE-------------DS-SNP---V-YYINYA---HARIHQVFA---KAGKKIDDVMKADLQSLNQDGVNLLF 378 (464)
T ss_dssp EEGGGGGCC-------------ST-TSH---H-HHHHHH---HHHHHHHHH---HTTCCTTTSTTCCCTTCCHHHHHHHH
T ss_pred cCHHHHHHH-------------hC-CCH---H-HHHHHH---HHHHHHHHH---HhhccCCCccccChhhCChHHHHHHH
Confidence 999854331 00 111 0 011111 123333332 2211101111 12234455999999
Q ss_pred HHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHhhh
Q psy5309 1368 EMNLKIKETEDHYTKMLFKEALRTGFFELQAARDKYRELTA 1408 (1618)
Q Consensus 1368 ~l~~l~~~v~~~~e~~~f~~a~~~i~~~f~~~~n~Y~~~~~ 1408 (1618)
++.++.+.+.+++++++++.+++.++ +++...|.|.+.|+
T Consensus 379 ~L~~~~~~v~~a~~~~ep~~i~~yL~-~La~~~n~fY~~~~ 418 (464)
T 3fnr_A 379 EALNLKAVLNDAFEARALQKIPDYLK-NLAANFHKFYNENK 418 (464)
T ss_dssp HHHTHHHHHHHHHHHTCTTHHHHHHH-HHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHH-HHHHHHHHHHHhCc
Confidence 99999999999999999999999985 99987777777664
No 50
>1f7u_A Arginyl-tRNA synthetase; RNA-protein complex, aminoacylation; HET: PSU 1MG 2MG H2U M2G 5MC 5MU 1MA ARG; 2.20A {Saccharomyces cerevisiae} SCOP: a.27.1.1 c.26.1.1 d.67.2.1 PDB: 1bs2_A* 1f7v_A*
Probab=99.16 E-value=8.5e-11 Score=149.39 Aligned_cols=160 Identities=14% Similarity=0.130 Sum_probs=107.6
Q ss_pred CCCCeEEeCCCCCCCCcchhhhhchhhhhHHHHHHHHHcCCcccccccccCCChhhHHHHHHHHHHHHhcCCCCCCCCCC
Q psy5309 86 PDDKFFTTFPFPYMNGRLHLGHTFSLSKCEFSVRFNRLKGKRVLFPFGFHCTGMPIKACADKLKREMESFGFPPQFPSED 165 (1618)
Q Consensus 86 ~~~~f~v~~ppP~~nG~LHiGHa~~~~~~D~~aR~~rm~G~~V~~~~G~d~~G~pIe~~a~k~~~~~~~~gi~~~~~e~~ 165 (1618)
..++..|.+..|||||++||||+|+.+++|+++|+++..||+|.+..+++++|.|+..++...++ +|.+..+.
T Consensus 141 ~~~~V~ve~~spN~~~plHvGHlRs~iiGD~laRil~~~G~~V~~~~~i~D~G~Q~~~l~~~~~~----~g~~~~~~--- 213 (607)
T 1f7u_A 141 ENKKVIIEFSSPNIAKPFHAGHLRSTIIGGFLANLYEKLGWEVIRMNYLGDWGKQFGLLAVGFER----YGNEEALV--- 213 (607)
T ss_dssp SCCEEEEECCCCBTTSCCBGGGHHHHHHHHHHHHHHHHTTCEEEEEEEEBCCSHHHHHHHHHHHH----HCCHHHHH---
T ss_pred CCCeEEEEecCCCCCCCCccchHHHHHHHHHHHHHHHHcCCCeeEEEeecCcchHHHHHHHHHHH----hCchhhcc---
Confidence 35679999999999999999999999999999999999999999999999999999888765332 22110000
Q ss_pred CCCCCCCCCCCchh--c---------------ccccCcchHHHHHhhhhHHHHHHHHhcCCCHHHHHHHhhhhhHHhhch
Q psy5309 166 TEPQTDKDDDDPVI--K---------------DKSKGKKSKAVAKAGSAKYQWQIMQSLGLEDDEIRKFADASHWLDHFP 228 (1618)
Q Consensus 166 ~~~~~~~~~~~~~~--~---------------~~~~g~~~~~~ak~~~~~~~~~~~~~~g~~~~e~~~f~~~~~~~~~~~ 228 (1618)
..++. . .++.|.+..+.|+....+.+ . | +++..+.- ..+++...
T Consensus 214 ---------~~~i~~l~~~Y~~~~~~~~~~~e~g~~~~~i~~~A~~~~~~le-----~-g--d~e~~~~w--~~~~~~~~ 274 (607)
T 1f7u_A 214 ---------KDPIHHLFDVYVRINKDIEEEGDSIPLEQSTNGKAREYFKRME-----D-G--DEEALKIW--KRFREFSI 274 (607)
T ss_dssp ---------HCHHHHHHHHHHHHHHHHHHSTTSSCHHHHSSHHHHHHHHHHH-----H-T--CHHHHHHH--HHHHHHHH
T ss_pred ---------CCChHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHhh-----C-C--CHHHHHHH--HHHHHHHH
Confidence 00000 0 00112334444444333321 1 2 22222221 34566777
Q ss_pred hHHHHHHHHcCCccc-ccCceeecCCChhhhHHHHHHHHHHHhcCccccC
Q psy5309 229 PLAVQDLRSIGIHVD-WRRTFITTDSNPFFDSFVRWQFMRLRDRHKIKYG 277 (1618)
Q Consensus 229 ~~~~~~l~~lGi~~D-w~~~~~T~d~~p~y~~~v~~~f~~L~~kG~iy~g 277 (1618)
+.+++++.+||+.+| |.++- .++...+..++..|.++|++|+.
T Consensus 275 ~~~~~~~~~L~V~fD~~~~ES------~~~~~~~~~vi~~L~~kG~~ye~ 318 (607)
T 1f7u_A 275 EKYIDTYARLNIKYDVYSGES------QVSKESMLKAIDLFKEKGLTHED 318 (607)
T ss_dssp HHHHHHHHHTTCCCSEEEEGG------GCCHHHHHHHHHHHHHTTCEEEE
T ss_pred HHHHHHHHHcCCcceeecCcc------hhhhhHHHHHHHHHHhCCCEEEE
Confidence 899999999999998 43331 11225789999999999999973
No 51
>1iq0_A Arginyl-tRNA synthetase; riken structural genomics/proteomics initiative, RSGI, structural genomics, ligase; 2.30A {Thermus thermophilus} SCOP: a.27.1.1 c.26.1.1 d.67.2.1
Probab=99.00 E-value=3.5e-10 Score=144.47 Aligned_cols=156 Identities=12% Similarity=0.100 Sum_probs=110.6
Q ss_pred CeEEeCCCCCCCCcchhhhhchhhhhHHHHHHHHHcCCcccccccccCCChhhHHHHHHHHHHHHhcCCCCCCCCCCCCC
Q psy5309 89 KFFTTFPFPYMNGRLHLGHTFSLSKCEFSVRFNRLKGKRVLFPFGFHCTGMPIKACADKLKREMESFGFPPQFPSEDTEP 168 (1618)
Q Consensus 89 ~f~v~~ppP~~nG~LHiGHa~~~~~~D~~aR~~rm~G~~V~~~~G~d~~G~pIe~~a~k~~~~~~~~gi~~~~~e~~~~~ 168 (1618)
+..|.+..|||||+|||||+|+.+++|+++|++++.||+|.+...+++.|.|+...+... ..+|.+..
T Consensus 104 ~v~ve~~spn~~~~~HiGH~R~~iigD~laR~l~~~G~~V~~~~~i~D~G~q~~~li~~~----~~~g~d~~-------- 171 (592)
T 1iq0_A 104 VVLVEHTSVNPNKELHVGHLRNIALGDAIARILAYAGREVLVLNYIDDTGRQAAETLFAL----RHYGLTWD-------- 171 (592)
T ss_dssp EEEEECCCCCTTSCCBHHHHHHHHHHHHHHHHHHHTTEEEEEEEEECTTSHHHHHHHHHH----HHTTCCCC--------
T ss_pred eEEEEeeCCCCCCCCcchHHHHHHHHHHHHHHHHHcCCceEEEeccCCcchHHHHHHHHH----HHhCCccc--------
Confidence 679999999999999999999999999999999999999999999999999997664432 23453210
Q ss_pred CCCCCCCCchhcccccCcchHHHHHhhhhH----HHHHHHHhcCCCHHHHHHHhhhhhHHhhchhHHHHHHHHcCCccc-
Q psy5309 169 QTDKDDDDPVIKDKSKGKKSKAVAKAGSAK----YQWQIMQSLGLEDDEIRKFADASHWLDHFPPLAVQDLRSIGIHVD- 243 (1618)
Q Consensus 169 ~~~~~~~~~~~~~~~~g~~~~~~ak~~~~~----~~~~~~~~~g~~~~e~~~f~~~~~~~~~~~~~~~~~l~~lGi~~D- 243 (1618)
+. ...+.|.|+...++++....+ ...++++.+.... ...+++.+.+.+++++++||+.+|
T Consensus 172 ---~~----~~~d~~~g~~y~~~~~~~~~~~~~~~a~~~~~~~e~g~--------~~~~~~~~~~~~~~~~~~LgI~~D~ 236 (592)
T 1iq0_A 172 ---GK----EKYDHFAGRAYVRLHQDPEYERLQPAIEEVLHALERGE--------LREEVNRILLAQMATMHALNARYDL 236 (592)
T ss_dssp ---SS----SCHHHHHHHHHHHHHHCTTTGGGHHHHHHHHHHHHTTT--------THHHHHHHHHHHHHHHHHTTCCCSE
T ss_pred ---CC----CCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHhCCchH--------HHHHHHHHHHHHHHHHHHcCCEeEE
Confidence 00 011245566666665544322 1111222211111 146678889999999999999998
Q ss_pred ccCceeecCCChhhhHHHHHHHHHHHhcCcccc
Q psy5309 244 WRRTFITTDSNPFFDSFVRWQFMRLRDRHKIKY 276 (1618)
Q Consensus 244 w~~~~~T~d~~p~y~~~v~~~f~~L~~kG~iy~ 276 (1618)
|.+ +.+ ......+++++.+|.++|++|+
T Consensus 237 ~~~---es~--~~~~~~v~~~~~~L~~kG~~y~ 264 (592)
T 1iq0_A 237 LVW---ESD--IVRAGLLQKALALLEQSPHVFR 264 (592)
T ss_dssp EEE---HHH--HHHTTHHHHHHHHHTTSTTEEC
T ss_pred ecc---CCc--ccccchHHHHHHHHHHCCCccc
Confidence 422 222 2236689999999999999995
No 52
>1irx_A Lysyl-tRNA synthetase; beta sandwitch, zinc-binding structure, rossmann fold, alpha-helix CAGE; 2.60A {Pyrococcus horikoshii} SCOP: a.97.1.2 c.26.1.1
Probab=98.82 E-value=9.7e-10 Score=138.68 Aligned_cols=61 Identities=15% Similarity=0.061 Sum_probs=44.5
Q ss_pred EEEEccceeeC--CccceeccCcccChHHHHhhcCccceEEeecccCcccccccccHH-HHHHHH
Q psy5309 1035 GIRANGHLLLN--SAKMSKSEGNFLTLTEAVKKFSADGMRLCLADSGDSVEDANFVES-MADAGI 1096 (1618)
Q Consensus 1035 ~v~~hG~vl~~--G~KMSKS~GNvV~p~eii~~yGaDalRl~l~~~~~~~~D~~fs~~-~~~~~~ 1096 (1618)
.+++||+|+.+ |+|||||+||+|++.++++.||+|++|+|+++. .+.++.+|+.+ .+...+
T Consensus 264 ~~~h~~~i~~~g~g~KmSKs~Gn~i~~~~~~~~~~pdalR~~l~~~-~~~~~~~fs~~~~l~~~~ 327 (523)
T 1irx_A 264 LSLMYEFVGIKGQKGKMSGSKGNVILLSDLYEVLEPGLVRFIYARH-RPNKEIKIDLGLGILNLY 327 (523)
T ss_dssp BCCEECCEEESCC---------CCCCHHHHHTTSCHHHHHHHHHSS-CTTSCEEECCSTTHHHHH
T ss_pred eEEEEEEEEeCCCCCCCCCcCCCCCCHHHHHHHcCHHHHHHHHHhc-CCCCCceeCcchhHHHHH
Confidence 57888999966 999999999999999999999999999999976 67899999987 554433
No 53
>1irx_A Lysyl-tRNA synthetase; beta sandwitch, zinc-binding structure, rossmann fold, alpha-helix CAGE; 2.60A {Pyrococcus horikoshii} SCOP: a.97.1.2 c.26.1.1
Probab=98.74 E-value=1.4e-09 Score=137.18 Aligned_cols=126 Identities=16% Similarity=0.144 Sum_probs=87.6
Q ss_pred eEEeCCCCCCCCcchhhhhchhhhhHHHHHHHHHcCCcccccccccCCC--hhh---HHHHHHHHHHHHhcCCCCCCCCC
Q psy5309 90 FFTTFPFPYMNGRLHLGHTFSLSKCEFSVRFNRLKGKRVLFPFGFHCTG--MPI---KACADKLKREMESFGFPPQFPSE 164 (1618)
Q Consensus 90 f~v~~ppP~~nG~LHiGHa~~~~~~D~~aR~~rm~G~~V~~~~G~d~~G--~pI---e~~a~k~~~~~~~~gi~~~~~e~ 164 (1618)
.++....|+|||+|||||+|++++.|+++||++++|++|.|.+++|++| ..| ...+. + +..|.+..
T Consensus 21 ~yv~~tgPsPtG~lHIGhaR~al~~D~laR~l~~~g~~v~fi~~idD~d~~rkip~~~~~a~--~---~~~G~~~~---- 91 (523)
T 1irx_A 21 KYVVESGITPSGYVHVGNFRELFTAYIVGHALRDKGYEVRHIHMWDDYDRFRKVPRNVPQEW--K---DYLGMPIS---- 91 (523)
T ss_dssp EEEEEEEECCSSCCCHHHHHHHHHHHHHHHHHHTTTCEEEEEEEECTTSBCCCCCSSSCGGG--G---GGTTSBGG----
T ss_pred eEEECCCCCCCCCcccCCcHHHHHHHHHHHHHHHcCCCEEEEEeeCCcchhhhhhhHHHHHH--H---HHcCCCcc----
Confidence 3344345899999999999999999999999999999999999999999 333 11110 0 01132210
Q ss_pred CCCCCCCCCCCCchhcccccCcchHHHHHhhhhHHHHHHHHhcCCCHHHHHHHhhhhhHHhhchhHHHHHHHHcCCcccc
Q psy5309 165 DTEPQTDKDDDDPVIKDKSKGKKSKAVAKAGSAKYQWQIMQSLGLEDDEIRKFADASHWLDHFPPLAVQDLRSIGIHVDW 244 (1618)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~~g~~~~~~ak~~~~~~~~~~~~~~g~~~~e~~~f~~~~~~~~~~~~~~~~~l~~lGi~~Dw 244 (1618)
.+++ .|..+.++++++.+.++++|+.||+.+|+
T Consensus 92 -------------------------------------------~~p~----p~~~~~~~~~~~~~~~~~~l~~Lgi~~D~ 124 (523)
T 1irx_A 92 -------------------------------------------EVPD----PWGCHESYAEHFMRKFEEEVEKLGIEVDL 124 (523)
T ss_dssp -------------------------------------------GSCC----TTSSSSSHHHHHHHHHHHHHHTTTCCCEE
T ss_pred -------------------------------------------cCCc----chhhHHHHHHHHHHHHHHHHHHcCCCceE
Confidence 0000 01113577888899999999999998773
Q ss_pred cCceeecCCChhhhH-HHHHHHHHHHhcC-ccccC
Q psy5309 245 RRTFITTDSNPFFDS-FVRWQFMRLRDRH-KIKYG 277 (1618)
Q Consensus 245 ~~~~~T~d~~p~y~~-~v~~~f~~L~~kG-~iy~g 277 (1618)
|.+++ .|.+ .+.+++.+|.++| .||.-
T Consensus 125 ---~~~se---~~~~g~~~~~i~~L~~~G~~iy~~ 153 (523)
T 1irx_A 125 ---LYASE---LYKRGEYSEEIRLAFEKRDKIMEI 153 (523)
T ss_dssp ---EEHHH---HHHTTTTHHHHHHHHHTHHHHHHH
T ss_pred ---Eechh---hccchHHHHHHHHHHHchHHHHHH
Confidence 32222 1544 6788889999999 88753
No 54
>2zue_A Arginyl-tRNA synthetase; aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase, nucleotide-binding, protein biosynthesis, ligase/RNA complex; HET: ANP; 2.00A {Pyrococcus horikoshii} PDB: 2zuf_A
Probab=98.73 E-value=1.5e-08 Score=129.79 Aligned_cols=172 Identities=13% Similarity=0.070 Sum_probs=111.9
Q ss_pred CCCCeEEeCCCCCCCCcchhhhhchhhhhHHHHHHHHHcCCcccccccccCCChhhHHHHHHHHHHHHhcCCCCCCCCCC
Q psy5309 86 PDDKFFTTFPFPYMNGRLHLGHTFSLSKCEFSVRFNRLKGKRVLFPFGFHCTGMPIKACADKLKREMESFGFPPQFPSED 165 (1618)
Q Consensus 86 ~~~~f~v~~ppP~~nG~LHiGHa~~~~~~D~~aR~~rm~G~~V~~~~G~d~~G~pIe~~a~k~~~~~~~~gi~~~~~e~~ 165 (1618)
..++..|.+..|||||+|||||+|+.+++|+++|++++.||+|.+..+++++|.|+...+.... .+|.+..++..
T Consensus 117 ~~~~V~ve~~spN~~~~~HiGH~Rs~iigD~laR~l~~~G~~V~~~~~i~D~G~Q~~~l~~~~~----~~g~~~~~~~~- 191 (629)
T 2zue_A 117 KGKKVIVEHTSVNPTKPLHMGHARNAILGDVMARILRFLGYEVEVQNYIDDLGIQFAQVYWGYL----RLKEEFERIMN- 191 (629)
T ss_dssp TTCEEEEECCCCCTTSCCBHHHHHHHHHHHHHHHHHHHTTCEEEEEEEECTTSHHHHHHHHHHH----HCHHHHHHHHH-
T ss_pred CCCEEEEEeeCCCCCCCCccchhHHHHHHHHHHHHHHHcCCCceEEecccchhHHHHHHHHHHH----HhCCcchhhhh-
Confidence 3567999999999999999999999999999999999999999999999999999987764321 12211000000
Q ss_pred CCCCCCCCCCCchhcccccCcchHHHHHhhhhHH-----HHHHHHhcCCCHHHHHHHhhhhhHHhhchhHHHHHHHHcCC
Q psy5309 166 TEPQTDKDDDDPVIKDKSKGKKSKAVAKAGSAKY-----QWQIMQSLGLEDDEIRKFADASHWLDHFPPLAVQDLRSIGI 240 (1618)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~g~~~~~~ak~~~~~~-----~~~~~~~~g~~~~e~~~f~~~~~~~~~~~~~~~~~l~~lGi 240 (1618)
+........++. +.|.|.+..+.++...... ..+.+..+...+ .-...+++.+.+.+++++++||+
T Consensus 192 -~~~~~~~~~~~~--d~~~g~~y~~~a~~~~~~~~~~~~~~~~~~~~e~gd------~~~~~~~~~~~~~f~~~~~~L~I 262 (629)
T 2zue_A 192 -ELRERGLKDNPI--DHALGLLYVEVNRRLEDNPELENEIRDIMKKLESGE------LYGRKLAEEVVRAQMVTTYKLGV 262 (629)
T ss_dssp -HHHHHTSCSCCH--HHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHSS------SCCHHHHHHHHHHHHHHHHHHTC
T ss_pred -hhcccccccCcc--hhhHHHHHHHHHHHHhcCchHHHHHHHHHHhccccc------HHHHHHHHHHHHHHHHHHHHcCC
Confidence 000000000111 2456666666555433321 111111111000 11256788889999999999999
Q ss_pred ccc-ccCceeecCCChhhhHHHHHHHHHHHhcCcccc
Q psy5309 241 HVD-WRRTFITTDSNPFFDSFVRWQFMRLRDRHKIKY 276 (1618)
Q Consensus 241 ~~D-w~~~~~T~d~~p~y~~~v~~~f~~L~~kG~iy~ 276 (1618)
.+| |.++ .+ ......+..++.+|.++|++|+
T Consensus 263 ~~D~~~~e---s~--~~~~~~v~~vi~~L~~kG~~y~ 294 (629)
T 2zue_A 263 KYDLLVWE---SD--IVRRKLFEIALELLSKNENFYI 294 (629)
T ss_dssp CCSEEEEH---HH--HHHTTHHHHHHHHHHTSTTEEC
T ss_pred ccccccCc---Cc--cccchhHHHHHHHHHHCCCccc
Confidence 998 3332 22 2226689999999999999994
No 55
>2o5r_A Glutamyl-tRNA synthetase 1; TM1351, EC 6.1.1.17, glutamate-T ligase 1, glurs 1, structural genomics, joint center for ST genomics, JCSG; 2.34A {Thermotoga maritima}
Probab=97.46 E-value=0.00011 Score=91.04 Aligned_cols=41 Identities=24% Similarity=0.129 Sum_probs=35.4
Q ss_pred CCeEEeCCCCCCCCcchhhhhchhhhhHHHHHHHHHcCCcccc
Q psy5309 88 DKFFTTFPFPYMNGRLHLGHTFSLSKCEFSVRFNRLKGKRVLF 130 (1618)
Q Consensus 88 ~~f~v~~ppP~~nG~LHiGHa~~~~~~D~~aR~~rm~G~~V~~ 130 (1618)
..++++.-+|+|||+|||||+|++++.|.+||. ..|.-+++
T Consensus 11 ~~vv~~RfaPsPTG~LHiG~aRtAl~n~~~Ar~--~~G~~iLR 51 (481)
T 2o5r_A 11 HHMVRVRFAPSPTGFLHVGGARTALFNFLFARK--EKGKFILR 51 (481)
T ss_dssp --CCEEEECCCCCSCCBHHHHHHHHHHHHHHHH--HTCEEEEC
T ss_pred ceEEEEEECCCCCCCcCHHHHHHHHHHHHHHHH--cCCeEEEE
Confidence 457788888999999999999999999999998 67887765
No 56
>3aii_A Glutamyl-tRNA synthetase; amino-acyl tRNA synthetase, ligase; 1.65A {Methanothermobacter thermautotrophicusorganism_taxid}
Probab=97.37 E-value=3.1e-05 Score=95.95 Aligned_cols=104 Identities=13% Similarity=0.027 Sum_probs=72.5
Q ss_pred ccCCCccchhhhHHHHhhhhhhhhhhcccccccc---cchhhhhhhhh--ccCCCCCCcCcEEEEccceeeCCccceecc
Q psy5309 979 IRANGHLLLNSAKDLIQNHLTFFIYKLFSDLIQN---HLTFFIYIHTA--IWGDEPEMWPRGIRANGHLLLNSAKMSKSE 1053 (1618)
Q Consensus 979 lr~~g~~~~~e~~~~i~~~~~~~i~~~~~~~~~~---h~~~~i~~~~~--~~p~~~~~~pk~v~~hG~vl~~G~KMSKS~ 1053 (1618)
.+|++|++| ..+.+..+.+++++ |++|...+..+ .++ .+.|+. .++|++..+|+|||||+
T Consensus 270 g~PtYhfa~-----------~vDD~~~GIThviRG~D~~~nt~~Q~~l~~alG---~~~P~y-~H~~~L~~~g~KLSKR~ 334 (553)
T 3aii_A 270 VYPMMNFSV-----------AVDDHLLGVTHVLRGKDHLANREKQEYLYRHLG---WEPPEF-IHYGRLKMDDVALSTSG 334 (553)
T ss_dssp EEECHHHHH-----------HHHHHHTTCCEEEC-----CHHHHHHHHHHHHT---CCCCEE-ECCCCBC-------CHH
T ss_pred eeeeeeeee-----------eeeeccCCCceEeccHhhhhCHHHHHHHHHHcC---CCCCeE-EEeeEEecCCceechhh
Confidence 478888877 35677788899999 99998887622 122 234665 48999989999999999
Q ss_pred Cc---------------ccChHHHHhh-cCccceEEeecccCcccccccccHHHHHHHHh
Q psy5309 1054 GN---------------FLTLTEAVKK-FSADGMRLCLADSGDSVEDANFVESMADAGIL 1097 (1618)
Q Consensus 1054 GN---------------vV~p~eii~~-yGaDalRl~l~~~~~~~~D~~fs~~~~~~~~~ 1097 (1618)
|| +.+...+.++ |.++++|.|+++.+-..++..|+++.+....+
T Consensus 335 ~~~~v~~g~v~gWdDpr~~Ti~~lr~rG~~PeaIr~fl~~~G~s~~~~~~s~~~L~~~~r 394 (553)
T 3aii_A 335 AREGILRGEYSGWDDPRLGTLRAIARRGIRPEAIRKLMVEIGVKIADSTMSWKKIYGLNR 394 (553)
T ss_dssp HHHHHHHSSCCSTTCTTSCBHHHHHHTTCCHHHHHHHHHHHTTCSSCBCCCHHHHHHHHH
T ss_pred hhhhccccccccccCcchHHHHHHHHcCCCHHHHHHHHHhcCCCCccccccHHHHHHHHH
Confidence 98 6778888887 99999999999886657899999877655443
No 57
>1f7u_A Arginyl-tRNA synthetase; RNA-protein complex, aminoacylation; HET: PSU 1MG 2MG H2U M2G 5MC 5MU 1MA ARG; 2.20A {Saccharomyces cerevisiae} SCOP: a.27.1.1 c.26.1.1 d.67.2.1 PDB: 1bs2_A* 1f7v_A*
Probab=97.33 E-value=0.00028 Score=89.88 Aligned_cols=138 Identities=8% Similarity=0.061 Sum_probs=101.8
Q ss_pred CcCcEEEEccceeeCCccceeccCcccChHHHHhhcCc----------------------------cceEEeecccCccc
Q psy5309 1031 MWPRGIRANGHLLLNSAKMSKSEGNFLTLTEAVKKFSA----------------------------DGMRLCLADSGDSV 1082 (1618)
Q Consensus 1031 ~~pk~v~~hG~vl~~G~KMSKS~GNvV~p~eii~~yGa----------------------------DalRl~l~~~~~~~ 1082 (1618)
++++.+.+.+|.+++ |||||+||+|++.|+++.++. .++||++++. .+.
T Consensus 392 ~~~~~~~Hv~fg~v~--kMSkR~G~~v~L~dLlde~~~~a~~~~~~~~~~~~~~~e~~~~a~~vgi~avry~~Ls~-~~~ 468 (607)
T 1f7u_A 392 EWAKDLQHVNFGMVQ--GMSTRKGTVVFLDNILEETKEKMHEVMKKNENKYAQIEHPEEVADLVGISAVMIQDMQG-KRI 468 (607)
T ss_dssp GGGGGEEEECCCCEE--SCCGGGTCCCBHHHHHHHHHHHHHHHHHTCHHHHTTCSCHHHHHHHHHHHHHHHHHHSS-CTT
T ss_pred CcCcEEEEecccccc--cccCCCCCcccHHHHHHHHHHHHHHHHHhCcccccchhhHHHHHHHHHHHHHHHHHhcc-CCC
Confidence 356667777886655 699999999999999998744 3799999976 889
Q ss_pred ccccccHHHHHHHH----hhHHHHHHHHHHHHHhcccCC----CCCC---C-CcchHHHHHHHHHHHHHHHHHHhhccHH
Q psy5309 1083 EDANFVESMADAGI----LRLYTFIEWVKEILATQSTLR----TGSQ---D-SFNDKVFLSEMNLKIKETEDHYTKMLFK 1150 (1618)
Q Consensus 1083 ~D~~fs~~~~~~~~----~kl~N~~~~l~~~l~~~~~~~----~~~~---~-~~~D~~~l~~l~~~i~~v~~~~e~~~f~ 1150 (1618)
++..|+++.+.+.- .-+.....|+.+++.+..... .... + ...++.++..+..+.+.+.+++++++.+
T Consensus 469 s~~~Fd~d~~~~~~g~t~pylqYa~aRi~SIlrka~~~~~~~~~~~~~~~l~~~~e~~L~~~l~~fp~vv~~a~~~~~P~ 548 (607)
T 1f7u_A 469 NNYEFKWERMLSFEGDTGPYLQYAHSRLRSVERNASGITQEKWINADFSLLKEPAAKLLIRLLGQYPDVLRNAIKTHEPT 548 (607)
T ss_dssp CCEECCHHHHHCCSSSSHHHHHHHHHHHHHHHHHTTTSCHHHHTTSCGGGCCSHHHHHHHHHHTTHHHHHHHHHHHCCHH
T ss_pred CCcccCHHHHHHHhccchHHHHHHHHHHHHHHHHhcCCCcccccccchhhcCCHHHHHHHHHHHHHHHHHHHHHHhcCHH
Confidence 99999998865321 244555566667666541111 0011 1 3445678888889999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhc
Q psy5309 1151 EALRTGFFELQAARDKYRELTA 1172 (1618)
Q Consensus 1151 ~al~~~~~~l~~~~n~Yi~~~k 1172 (1618)
..+.. ++++....|.|-+.++
T Consensus 549 ~l~~Y-l~~La~~fn~fY~~~~ 569 (607)
T 1f7u_A 549 TVVTY-LFKLTHQVSSCYDVLW 569 (607)
T ss_dssp HHHHH-HHHHHHHHHHHHHHCC
T ss_pred HHHHH-HHHHHHHHHHHHHhCC
Confidence 99998 6899988888777664
No 58
>1nzj_A Hypothetical protein YADB; Zn cluster, glutamyl T-RNA synthetase, structural genomics, unknown function; 1.50A {Escherichia coli} SCOP: c.26.1.1 PDB: 2zlz_A* 4a91_A*
Probab=97.25 E-value=0.00024 Score=82.53 Aligned_cols=45 Identities=16% Similarity=0.181 Sum_probs=32.3
Q ss_pred hchhHHHHHHHHcCCcccccC-ceeecCCChhhhHHHHHHHHHHHhcCcccc
Q psy5309 226 HFPPLAVQDLRSIGIHVDWRR-TFITTDSNPFFDSFVRWQFMRLRDRHKIKY 276 (1618)
Q Consensus 226 ~~~~~~~~~l~~lGi~~Dw~~-~~~T~d~~p~y~~~v~~~f~~L~~kG~iy~ 276 (1618)
.+.+.|.++|+.+|+..| . .+...+ +......++.+|.++|++|.
T Consensus 55 ~~~~~I~~dL~~LGl~~D--~~~~~qSe----r~~~y~~~~~~L~~~G~aY~ 100 (298)
T 1nzj_A 55 GAAETILRQLEHYGLHWD--GDVLWQSQ----RHDAYREALAWLHEQGLSYY 100 (298)
T ss_dssp THHHHHHHHHHHTTCCCS--SCCEEGGG----CHHHHHHHHHHHHHTTCEEE
T ss_pred HHHHHHHHHHHHcCCCCC--CCCeeeeC----CHHHHHHHHHHHHHcCCccc
Confidence 345678899999996554 3 333222 55677888999999999995
No 59
>3al0_C Glutamyl-tRNA(Gln) amidotransferase subunit C, GL tRNA synthetase 2; protein-RNA complex, ligase-RNA complex; HET: GSU; 3.37A {Thermotoga maritima}
Probab=97.17 E-value=0.00077 Score=85.25 Aligned_cols=39 Identities=26% Similarity=0.249 Sum_probs=32.8
Q ss_pred CCeEEeCCCCCCCCcchhhhhchhhhhHHHHHHHHHcCCccc
Q psy5309 88 DKFFTTFPFPYMNGRLHLGHTFSLSKCEFSVRFNRLKGKRVL 129 (1618)
Q Consensus 88 ~~f~v~~ppP~~nG~LHiGHa~~~~~~D~~aR~~rm~G~~V~ 129 (1618)
+++.+-|+ |+|||+|||||++++++.+.+||. ..|.-++
T Consensus 128 ~~v~~RFa-PsPTG~LHiG~artAl~n~l~Ar~--~~G~~il 166 (592)
T 3al0_C 128 ELVRVRFA-PSPTGHLHVGGARTALFNWMFARK--EGGKFIL 166 (592)
T ss_dssp CCCEEEEC-CCSSSCCBHHHHHHHHHHHHHHHH--HTCEEEE
T ss_pred CeEEEEEC-CCCCCCccHHHHHHHHHHHHHHHh--cCCcEEE
Confidence 56888999 999999999999999999999985 3454443
No 60
>3aii_A Glutamyl-tRNA synthetase; amino-acyl tRNA synthetase, ligase; 1.65A {Methanothermobacter thermautotrophicusorganism_taxid}
Probab=97.03 E-value=0.00044 Score=85.70 Aligned_cols=45 Identities=20% Similarity=0.180 Sum_probs=33.0
Q ss_pred hchhHHHHHHHHcCCcccccCceeecCCChhhhHHHHHHHHHHHhcCcccc
Q psy5309 226 HFPPLAVQDLRSIGIHVDWRRTFITTDSNPFFDSFVRWQFMRLRDRHKIKY 276 (1618)
Q Consensus 226 ~~~~~~~~~l~~lGi~~Dw~~~~~T~d~~p~y~~~v~~~f~~L~~kG~iy~ 276 (1618)
.+.+.|.++|+.||+. |+..+...+ |-........+|.++|++|.
T Consensus 146 e~~~~I~edL~wLGl~--wd~~~~qSd----r~~~y~~~~~~Li~~G~AY~ 190 (553)
T 3aii_A 146 EAYDMIPADLEWLGVE--WDETVIQSD----RMETYYEYTEKLIERGGAYV 190 (553)
T ss_dssp THHHHHHHHHHHHTCC--CSEEEEGGG----GHHHHHHHHHHHHHTTSEEE
T ss_pred HHHHHHHHHHHHcCCC--CCCCccccc----CHHHHHHHHHHHHHcCCcee
Confidence 3456778999999964 544444333 66678888899999999995
No 61
>1qtq_A GLNRS, protein (glutaminyl-tRNA synthetase); glutamine, trnaGln, E. coli, complex, ligase/RNA complex; HET: QSI; 2.25A {Escherichia coli} SCOP: b.53.1.2 c.26.1.1 PDB: 1gsg_P* 1gts_A* 1gtr_A* 1zjw_A* 1o0b_A* 1o0c_A* 1qru_A* 1qrs_A* 1qrt_A* 1euy_A* 1euq_A* 1exd_A* 2rd2_A* 2re8_A* 1nyl_A
Probab=96.82 E-value=0.0011 Score=82.14 Aligned_cols=30 Identities=37% Similarity=0.475 Sum_probs=24.3
Q ss_pred CeEEeCCCCCCCCcchhhhhchhhhhHHHHH
Q psy5309 89 KFFTTFPFPYMNGRLHLGHTFSLSKCEFSVR 119 (1618)
Q Consensus 89 ~f~v~~ppP~~nG~LHiGHa~~~~~~D~~aR 119 (1618)
++..=|| |.|||.||||||+++++...+||
T Consensus 26 ~v~tRFa-PSPtG~LHIGhaRtal~n~l~Ar 55 (553)
T 1qtq_A 26 TVHTRFP-PEPNGYLHIGHAKSICLNFGIAQ 55 (553)
T ss_dssp SCEEEEC-CCTTSCCBHHHHHHHHHHHHHHH
T ss_pred ceEEEeC-CCCCCCccHHHHHHHHHHHHHHH
Confidence 4444454 89999999999999999777776
No 62
>2hz7_A Glutaminyl-tRNA synthetase; rossmann fold, GLNRS core, class I aminoacyl-tRNA synthetase, ligase; 2.30A {Deinococcus radiodurans}
Probab=96.55 E-value=0.0017 Score=84.03 Aligned_cols=46 Identities=11% Similarity=0.104 Sum_probs=32.2
Q ss_pred hchhHHHHHHHHcCCcccccCceeecCCChhhhHHHHHHHHHHHhcCcccc
Q psy5309 226 HFPPLAVQDLRSIGIHVDWRRTFITTDSNPFFDSFVRWQFMRLRDRHKIKY 276 (1618)
Q Consensus 226 ~~~~~~~~~l~~lGi~~Dw~~~~~T~d~~p~y~~~v~~~f~~L~~kG~iy~ 276 (1618)
.+.+.|.++|+.||+..| ...+...+ |-........+|.++|+.|.
T Consensus 116 e~~~~IledL~wLGl~wd-e~~~~qSe----r~d~y~e~a~~LI~~G~AY~ 161 (851)
T 2hz7_A 116 EYVDSIADDLKWLGLDWG-EHFYYASD----YFDRYYAYAEQLIRQGDAYV 161 (851)
T ss_dssp HHHHHHHHHHHHHTCCCT-TCEEEGGG----GHHHHHHHHHHHHHTTSEEE
T ss_pred HHHHHHHHHHHHcCCCCC-CCcccHhh----hHHHHHHHHHHHHHCCCcEe
Confidence 345677899999995443 23343332 66677788899999999995
No 63
>1qtq_A GLNRS, protein (glutaminyl-tRNA synthetase); glutamine, trnaGln, E. coli, complex, ligase/RNA complex; HET: QSI; 2.25A {Escherichia coli} SCOP: b.53.1.2 c.26.1.1 PDB: 1gsg_P* 1gts_A* 1gtr_A* 1zjw_A* 1o0b_A* 1o0c_A* 1qru_A* 1qrs_A* 1qrt_A* 1euy_A* 1euq_A* 1exd_A* 2rd2_A* 2re8_A* 1nyl_A
Probab=96.53 E-value=0.00053 Score=85.02 Aligned_cols=99 Identities=14% Similarity=-0.017 Sum_probs=73.1
Q ss_pred ccCCCccchhhhHHHHhhhhhhhhhhccccccc---ccchhhhhhhhhccCCCCCC-cCcEEEEccceeeCCccceeccC
Q psy5309 979 IRANGHLLLNSAKDLIQNHLTFFIYKLFSDLIQ---NHLTFFIYIHTAIWGDEPEM-WPRGIRANGHLLLNSAKMSKSEG 1054 (1618)
Q Consensus 979 lr~~g~~~~~e~~~~i~~~~~~~i~~~~~~~~~---~h~~~~i~~~~~~~p~~~~~-~pk~v~~hG~vl~~G~KMSKS~G 1054 (1618)
.+|.+|+.| ..+.|..+.++++ +|++|..++..++- +...+ .|+.+ .+|++..+|.|||||+|
T Consensus 207 g~PtY~la~-----------vvDDh~~GITHviRg~e~~~n~~~q~~l~~-alg~~~~P~~~-~f~hLn~~g~KLSKR~~ 273 (553)
T 1qtq_A 207 IYPMYDFTH-----------CISDALEGITHSLCTLEFQDNRRLYDWVLD-NITIPVHPRQY-EFSRLNLEYTVMSKRKL 273 (553)
T ss_dssp EEECHHHHH-----------HHHHHHTTCSEEEEEGGGTTTHHHHHHHHH-TSCCSCCCEEE-EECCCCBTTSCCCHHHH
T ss_pred ccccccccc-----------EEEeccCCcceEeeccchhhhHHHHHHHHH-HcCCCCCCCeE-EEEeecCCCcccccccc
Confidence 377888655 3677888999999 99999988863221 11222 24444 89999999999999999
Q ss_pred c---------------ccChHHHHhh-cCccceEEeecccCcccccccccHH
Q psy5309 1055 N---------------FLTLTEAVKK-FSADGMRLCLADSGDSVEDANFVES 1090 (1618)
Q Consensus 1055 N---------------vV~p~eii~~-yGaDalRl~l~~~~~~~~D~~fs~~ 1090 (1618)
| +++..++.++ |.++++|.|++..+-...+..+...
T Consensus 274 ~~~v~~g~v~gWDDPr~~Ti~~lr~rGy~PeAirnfl~~lG~s~~~~~~e~~ 325 (553)
T 1qtq_A 274 NLLVTDKHVEGWDDPRMPTISGLRRRGYTAASIREFCKRIGVTKQDNTIEMA 325 (553)
T ss_dssp HHHHHTTSSSCTTCTTSCBHHHHHHHTCCHHHHHHHHHHHCCCSSCCCBCHH
T ss_pred ccccccCcccCCCCcchhhHHHHHHCCCCHHHHHHHHHHcCCCCCccccchh
Confidence 7 6788899977 9999999999877654445444433
No 64
>1wka_A Valyl-tRNA synthetase; editing, CP1, fidelity, thermus thrmophilus, translation, amino acid, structural genomics; 1.70A {Thermus thermophilus} SCOP: b.51.1.1 PDB: 1wk9_A*
Probab=96.43 E-value=0.00091 Score=69.52 Aligned_cols=77 Identities=12% Similarity=0.131 Sum_probs=56.7
Q ss_pred cccCCccEEEEec-ccccCccCCCeeEEecCCCCeeEEEcCCC----cEEEeccccccc-cc----cCCCchhhhHHHHh
Q psy5309 360 SCLDSKPVFLVAA-TLRPETMYGQTNAWVRPDMAYIAFTTATG----EVFVCTERSARN-MA----YQGFTEVEGKINVL 429 (1618)
Q Consensus 360 ~~~~~~~~~iv~~-~~~~~t~~Gt~~v~v~P~~~y~~~~~~~~----~~~i~~~~~~~~-~~----~~g~~~~~a~~~ii 429 (1618)
+|+.+++++|+++ .+.++ +|||+|++.|+|+..||+.+.. -+.+++.++..+ .. |.|+.+++|+..|+
T Consensus 54 ~P~~~~~ipI~~~~~V~~~--~GTG~V~~~Pah~~~D~~~~~~~~L~~~~~id~~G~~~~~~~~~~~~Gl~~~~A~~~Ii 131 (147)
T 1wka_A 54 IPLTEVWIPILADPAVEKD--FGTGALKVTPAHDPLDYEIGERHGLKPVSVINLEGRMEGERVPEALRGLDRFEARRKAV 131 (147)
T ss_dssp CTTSSCEEEEEECTTCCTT--STTSEEEECTTTCHHHHHHHHHHTCCCCCSBCTTSBBCSTTSCGGGTTSBHHHHHHHHH
T ss_pred CCCCCCeeEEEEeCccccC--CCCCcEEEccCCCHHHHHHHHHcCCCcceEECCCCEEcCCCcccccCCcCHHHHHHHHH
Confidence 4667888888775 57776 9999999999999888876431 122222222212 23 99999999999999
Q ss_pred hhhccCcce
Q psy5309 430 LRLTGQVCI 438 (1618)
Q Consensus 430 ~~l~~~~l~ 438 (1618)
+.|+..++.
T Consensus 132 ~~L~~~g~l 140 (147)
T 1wka_A 132 ELFREAGHL 140 (147)
T ss_dssp HHHHHHTCE
T ss_pred HHHHHCCCe
Confidence 999888766
No 65
>2cfo_A Glutamyl-tRNA synthetase; ligase, aminoacyl-tRNA synthetase, ATP-binding, nucleotide-B; HET: GLU; 2.45A {Synechococcus elongatus}
Probab=96.26 E-value=0.0027 Score=78.58 Aligned_cols=44 Identities=16% Similarity=0.219 Sum_probs=37.4
Q ss_pred EEEEcccee-eCCccceeccCcccChHHHHhh-cCccceEEeecccC
Q psy5309 1035 GIRANGHLL-LNSAKMSKSEGNFLTLTEAVKK-FSADGMRLCLADSG 1079 (1618)
Q Consensus 1035 ~v~~hG~vl-~~G~KMSKS~GNvV~p~eii~~-yGaDalRl~l~~~~ 1079 (1618)
.+.++++++ .+|+|||||.||+ ...++.++ |.++++|.|++..+
T Consensus 233 ~~~H~plil~~~g~KLSKr~g~~-~l~~~r~~G~~peal~~~l~~lG 278 (492)
T 2cfo_A 233 NFAHTPLILNSTGQKLSKRDGVT-SISDFRAMGYLAPALANYMTLLG 278 (492)
T ss_dssp EEEEECCEECSSSSBCCTTSSCC-BHHHHHHTTCCHHHHHHHHHHTT
T ss_pred eEEEeeeEECCCCCEecccCCcc-cHHHHHHCCCCHHHHHHHHHHhC
Confidence 566778876 8999999999997 78888875 89999999998764
No 66
>4g6z_A Glutamate-tRNA ligase; aminoacyl-tRNA synthetase, AARS, class 1B AARS, ATP-dependen charging, protein synthesis, structural genomics; HET: GLU; 2.05A {Burkholderia thailandensis}
Probab=96.18 E-value=0.0041 Score=76.46 Aligned_cols=39 Identities=33% Similarity=0.278 Sum_probs=29.8
Q ss_pred CCeEEeCCCCCCCCcchhhhhchhhhhHHHHHHHHHcCCccc
Q psy5309 88 DKFFTTFPFPYMNGRLHLGHTFSLSKCEFSVRFNRLKGKRVL 129 (1618)
Q Consensus 88 ~~f~v~~ppP~~nG~LHiGHa~~~~~~D~~aR~~rm~G~~V~ 129 (1618)
.++.+=|+ |.|||.|||||++++++...++|. ..|.-++
T Consensus 24 ~~v~~RFA-PSPTG~lHiG~~rtal~n~l~Ar~--~~G~fil 62 (490)
T 4g6z_A 24 RPVRTRFA-PSPTGFIHLGNIRSALYPWAFARK--MKGTFVL 62 (490)
T ss_dssp CCCEEEEC-CCCCSCCBHHHHHHHHHHHHHHHH--TTCEEEE
T ss_pred CCceEEeC-CCCCCCccHHHHHHHHHHHHHHHh--cCCeEEE
Confidence 44556665 899999999999999998888874 3454443
No 67
>4gri_A Glutamate--tRNA ligase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, aminoacyl-tRNA synthetase; HET: GLU; 2.60A {Borrelia burgdorferi}
Probab=95.83 E-value=0.0078 Score=75.25 Aligned_cols=37 Identities=22% Similarity=0.168 Sum_probs=28.0
Q ss_pred eEEeCCCCCCCCcchhhhhchhhhhHHHHHHHHHcCCccc
Q psy5309 90 FFTTFPFPYMNGRLHLGHTFSLSKCEFSVRFNRLKGKRVL 129 (1618)
Q Consensus 90 f~v~~ppP~~nG~LHiGHa~~~~~~D~~aR~~rm~G~~V~ 129 (1618)
.-+=| +|-|||.||||||+++.+.-.+||- ..|.-++
T Consensus 25 vrtRF-APsPtG~LHiG~artAl~n~~~Ar~--~~G~fiL 61 (512)
T 4gri_A 25 TRVRY-APSPTGLQHIGGIRTALFNYFFAKS--CGGKFLL 61 (512)
T ss_dssp CEEEE-CCCSSSCCBHHHHHHHHHHHHHHHH--TTCEEEE
T ss_pred eeEEe-CcCCCCcccHHHHHHHHHHHHHHHH--cCCEEEE
Confidence 33444 4899999999999999999988764 4565443
No 68
>3o0a_A Leucyl-tRNA synthetase subunit alpha; CP1 hydrolytic DOM ligase, aminoacyl-tRNA synthetase, ATP-binding, nucleotide- protein biosynthesis; 1.77A {Aquifex aeolicus} PDB: 3pz0_A 3pz5_A
Probab=95.79 E-value=0.0032 Score=69.75 Aligned_cols=77 Identities=13% Similarity=0.101 Sum_probs=56.3
Q ss_pred cccCCccEEEEec-ccccCccCCCeeEEecCCCCeeEEEcCCC----cEEEecc-------------ccc--cccccCCC
Q psy5309 360 SCLDSKPVFLVAA-TLRPETMYGQTNAWVRPDMAYIAFTTATG----EVFVCTE-------------RSA--RNMAYQGF 419 (1618)
Q Consensus 360 ~~~~~~~~~iv~~-~~~~~t~~Gt~~v~v~P~~~y~~~~~~~~----~~~i~~~-------------~~~--~~~~~~g~ 419 (1618)
+|+.++.++|+++ .+.++ +|||+|++.|+|+..||+.+.. -+.++.. ++. ....|.|+
T Consensus 115 ~Pl~~~~iPI~~adyV~~~--~GTGaV~~aPaHd~~D~~~~~k~~Lpi~~vi~~~~~~~~~~g~ft~~g~~~~~~~~~Gl 192 (219)
T 3o0a_A 115 NPANGEKIPVWSANYVLYE--YGTGAIMCVPAHDQRDWEFAKKYDLPIKVVVKPEGAWDFEKGAYEGKGTLVNSDGFDGL 192 (219)
T ss_dssp CTTTCCEEEEEEETTSCTT--STTSEEEECTTTCHHHHHHHHHHTCCCCCCEECSSCCCTTTCCCCSCCEECSCGGGTTC
T ss_pred CCCCCCeeeEEEecccccC--CCCCeEEECCCCCHHHHHHHHHcCCCceeeeCCccccccccccccccceEecCCCCCCC
Confidence 4667888888654 57777 9999999999999988876531 1111211 110 01469999
Q ss_pred chhhhHHHHhhhhccCcce
Q psy5309 420 TEVEGKINVLLRLTGQVCI 438 (1618)
Q Consensus 420 ~~~~a~~~ii~~l~~~~l~ 438 (1618)
.+++|+..|++.|+..++.
T Consensus 193 ~~~eA~~~Ii~~L~~~g~l 211 (219)
T 3o0a_A 193 DSETAKRKITEWLQDRGLG 211 (219)
T ss_dssp BHHHHHHHHHHHHHHTTSE
T ss_pred CHHHHHHHHHHHHHHCCCe
Confidence 9999999999999998876
No 69
>3afh_A Glutamyl-tRNA synthetase 2; protein-substrate complex, aminoacyl-tRNA synthetase, ATP-binding, ligase, nucleotide-binding; HET: GSU; 2.00A {Thermotoga maritima} PDB: 3akz_B*
Probab=95.75 E-value=0.0067 Score=75.01 Aligned_cols=44 Identities=16% Similarity=0.130 Sum_probs=35.4
Q ss_pred EEEEcccee-eCCccceeccCcccChHHHHhh-cCccceEEeecccC
Q psy5309 1035 GIRANGHLL-LNSAKMSKSEGNFLTLTEAVKK-FSADGMRLCLADSG 1079 (1618)
Q Consensus 1035 ~v~~hG~vl-~~G~KMSKS~GNvV~p~eii~~-yGaDalRl~l~~~~ 1079 (1618)
.+.++.+++ .+|+||||+.|+ +...++.+. |-++++|-|++..+
T Consensus 241 ~f~H~pli~~~~g~KLSKR~g~-~~l~~~r~~G~~peal~n~l~~lG 286 (488)
T 3afh_A 241 VFMHIPLILGSDRTPLSKRHGA-TSVEHFRREGILSRALMNYLALLG 286 (488)
T ss_dssp EEEEECCEECTTSSBCCTTTSC-CBHHHHHHHTCCHHHHHHHHHHTT
T ss_pred eEEEEeeeeCCCCCcccCcCCc-ccHHHHHHCCCCHHHHHHHHHHhC
Confidence 455667776 789999999999 578888774 88999998888654
No 70
>1j09_A Glutamyl-tRNA synthetase; glurs-ATP-Glu complex, riken structural genomics/proteomics initiative, RSGI, structural genomics, ligase; HET: GLU ATP; 1.80A {Thermus thermophilus} SCOP: a.97.1.1 c.26.1.1 PDB: 1n75_A* 1n77_A* 1n78_A* 2cuz_A* 2cv0_A* 2cv1_A* 2cv2_A* 2dxi_A* 1g59_A 1gln_A
Probab=95.55 E-value=0.011 Score=72.76 Aligned_cols=44 Identities=20% Similarity=0.167 Sum_probs=35.1
Q ss_pred EEEEcccee-eCCccceeccCcccChHHHHhh-cCccceEEeecccC
Q psy5309 1035 GIRANGHLL-LNSAKMSKSEGNFLTLTEAVKK-FSADGMRLCLADSG 1079 (1618)
Q Consensus 1035 ~v~~hG~vl-~~G~KMSKS~GNvV~p~eii~~-yGaDalRl~l~~~~ 1079 (1618)
.+.++++++ .+|+||||++||+ ...++.++ |-++++|-|++..+
T Consensus 229 ~~~h~~li~~~~g~klSKR~g~~-~l~~~~~~G~~peal~~~l~~lG 274 (468)
T 1j09_A 229 RFYHMPLLRNPDKTKISKRKSHT-SLDWYKAEGFLPEALRNYLCLMG 274 (468)
T ss_dssp EEEEECCCBCTTSCBCCTTTSCC-BHHHHHHTTCCHHHHHHHHHHHS
T ss_pred eEEEeeeeeCCCCCccccccchh-hHHHHHHCCCCHHHHHHHHHHhc
Confidence 345667766 8899999999999 77777764 88999998887654
No 71
>2hz7_A Glutaminyl-tRNA synthetase; rossmann fold, GLNRS core, class I aminoacyl-tRNA synthetase, ligase; 2.30A {Deinococcus radiodurans}
Probab=95.40 E-value=0.0047 Score=79.97 Aligned_cols=99 Identities=12% Similarity=-0.106 Sum_probs=69.7
Q ss_pred ccCCCccchhhhHHHHhhhhhhhhhhcccccccc---cchhhhhhhhhccCCCCCCc-CcEEEEccceeeCCccceeccC
Q psy5309 979 IRANGHLLLNSAKDLIQNHLTFFIYKLFSDLIQN---HLTFFIYIHTAIWGDEPEMW-PRGIRANGHLLLNSAKMSKSEG 1054 (1618)
Q Consensus 979 lr~~g~~~~~e~~~~i~~~~~~~i~~~~~~~~~~---h~~~~i~~~~~~~p~~~~~~-pk~v~~hG~vl~~G~KMSKS~G 1054 (1618)
.+|.+|++| ..+.|..+.++++. |++|...+.-++ -+...+. |+ ...+|++..+|.|||||+|
T Consensus 247 g~PtYhfA~-----------vVDD~~~GITHViRG~D~~~n~~~q~~l~-~alG~~~~P~-~~~fahLn~~g~KLSKR~g 313 (851)
T 2hz7_A 247 IYPAYDFEH-----------PLQDAIEGVTHSMCSLEFVDNRAIYDWLM-EKLNFDPRPH-QYEFGRRGLEYTITSKRKL 313 (851)
T ss_dssp EEECHHHHH-----------HHHHHHHTCSEEEEEGGGTTTHHHHHHHH-HHTTCSSCCE-EEEECCEEETTCCCCHHHH
T ss_pred cccccceee-----------EeeeccCCcceeecchhhhhChHHHHHHH-HHcCCCCCCC-ceEEEEecCCCcccccccc
Confidence 478899877 24666677888888 788877765221 0011222 43 3488999999999999998
Q ss_pred c---------------ccChHHHHhh-cCccceEEeecccCcccccccccHH
Q psy5309 1055 N---------------FLTLTEAVKK-FSADGMRLCLADSGDSVEDANFVES 1090 (1618)
Q Consensus 1055 N---------------vV~p~eii~~-yGaDalRl~l~~~~~~~~D~~fs~~ 1090 (1618)
| +++..++.++ |.++++|.|++..+-...|..+...
T Consensus 314 ~~~v~~g~v~gwDDPr~~TI~~lr~rGy~PeAIr~fl~~lG~s~~~~~~e~~ 365 (851)
T 2hz7_A 314 RELVQAGRVSGWDDPRMPTLRAQRRLGVTPEAVRAFAAQIGVSRTNRTVDIA 365 (851)
T ss_dssp HHHHHTTSSSSTTCTTSSBHHHHHHHTCCHHHHHHHHHHSCCCSSCEEECHH
T ss_pred ccccccCcccCCCCcchhHHHHHHHcCCCHHHHHHHHHhcCCCCCcccccHH
Confidence 7 5678888876 9999999999877654445444433
No 72
>2cfo_A Glutamyl-tRNA synthetase; ligase, aminoacyl-tRNA synthetase, ATP-binding, nucleotide-B; HET: GLU; 2.45A {Synechococcus elongatus}
Probab=95.21 E-value=0.0036 Score=77.48 Aligned_cols=43 Identities=19% Similarity=0.365 Sum_probs=30.7
Q ss_pred hhHHHHHHHHcCCcccccC-ceeecCCChhhhHHHHHHHHHHHhcCcccc
Q psy5309 228 PPLAVQDLRSIGIHVDWRR-TFITTDSNPFFDSFVRWQFMRLRDRHKIKY 276 (1618)
Q Consensus 228 ~~~~~~~l~~lGi~~Dw~~-~~~T~d~~p~y~~~v~~~f~~L~~kG~iy~ 276 (1618)
.+.|.++|+.+|+ +|+. .|...+ +...-.....+|.++|++|.
T Consensus 53 ~~~i~~dL~wLGl--~wde~~~~QS~----r~~~y~~~~~~Li~~G~AY~ 96 (492)
T 2cfo_A 53 TENILEGLQWLGL--TWDEGPYFQSD----RLDLYRQAIQTLLDKGLAYY 96 (492)
T ss_dssp HHHHHHHHHHTTC--CCSEEEEEGGG----CHHHHHHHHHHHHHTTSEEE
T ss_pred HHHHHHHHHHcCC--CCCCCCccccC----CHHHHHHHHHHHHHCCCceE
Confidence 4577889999995 5654 344332 44566778889999999985
No 73
>1wny_A Isoleucyl-tRNA synthetase; ligase, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.60A {Thermus thermophilus} PDB: 1wnz_A* 1wk8_A* 1udz_A 1ue0_A
Probab=95.05 E-value=0.0039 Score=67.47 Aligned_cols=72 Identities=21% Similarity=0.196 Sum_probs=53.2
Q ss_pred CccEEEEec-ccccCccCCCeeEEecCCCCeeEEEcCCC----cEEEecccccc--ccccCCCchhhhHHHHhhhhccCc
Q psy5309 364 SKPVFLVAA-TLRPETMYGQTNAWVRPDMAYIAFTTATG----EVFVCTERSAR--NMAYQGFTEVEGKINVLLRLTGQV 436 (1618)
Q Consensus 364 ~~~~~iv~~-~~~~~t~~Gt~~v~v~P~~~y~~~~~~~~----~~~i~~~~~~~--~~~~~g~~~~~a~~~ii~~l~~~~ 436 (1618)
++.++|+.+ .+.++ +|||+|++.|+|+..||+.+.. -+.+++.++.. .. |.|+.+++|+..|++.|+..+
T Consensus 99 ~~~ipi~~~~~V~~~--~GTG~V~~aPahg~~D~~~~~~~~L~i~~~id~~G~~~~~~-~~Gl~v~~A~~~Ii~~L~~~g 175 (186)
T 1wny_A 99 EKGYFVVLADYVSQE--DGTGIVHQAPAFGAEDLETARVYGLPLLKTVDEEGKLLVEP-FKGLYFREANRAILRDLRGRG 175 (186)
T ss_dssp SSCCBEEECTTCCSS--SSCSCEEECGGGCHHHHHHHHHHTCCCCCCBCTTSBBCSTT-CTTCBHHHHHHHHHHHHHHTT
T ss_pred CCEEEEEEeCcCcCC--CCcccEEEcCCCCHHHHHHHHHcCCceEeeeCCCccCccCC-CCCcCHHHHHHHHHHHHHHCC
Confidence 677777665 57777 9999999999999888876531 12222222211 13 999999999999999999888
Q ss_pred ce
Q psy5309 437 CI 438 (1618)
Q Consensus 437 l~ 438 (1618)
+.
T Consensus 176 ~l 177 (186)
T 1wny_A 176 LL 177 (186)
T ss_dssp CE
T ss_pred Ce
Confidence 76
No 74
>2ja2_A Glutamyl-tRNA synthetase; non-discriminating glutamyl-tRNA aminoacylation, protein biosynthesis, aminoacyl-tRNA synthetase, ligase; 1.65A {Mycobacterium tuberculosis} PDB: 3pny_A 3pnv_A
Probab=94.98 E-value=0.026 Score=69.77 Aligned_cols=44 Identities=23% Similarity=0.228 Sum_probs=35.4
Q ss_pred EEEEcccee-eCCccceeccCcccChHHHHhh-cCccceEEeecccC
Q psy5309 1035 GIRANGHLL-LNSAKMSKSEGNFLTLTEAVKK-FSADGMRLCLADSG 1079 (1618)
Q Consensus 1035 ~v~~hG~vl-~~G~KMSKS~GNvV~p~eii~~-yGaDalRl~l~~~~ 1079 (1618)
.+.++.+++ .+|+||||++|++ +..++.+. |.++++|.|++..+
T Consensus 243 ~~~h~plil~~~g~KLSKR~g~~-~l~~~r~~G~~peAl~~~l~~lG 288 (498)
T 2ja2_A 243 KFAHLPTVLGEGTKKLSKRDPQS-NLFAHRDRGFIPEGLLNYLALLG 288 (498)
T ss_dssp EEEEECCEECSSSSBCCTTSGGG-BHHHHHHHTCCHHHHHHHHHTSS
T ss_pred eEEEeeeeECCCCCcccccCCcc-cHHHHHhCCCCHHHHHHHHHHhC
Confidence 445567766 8899999999994 78888775 88999999988665
No 75
>2ajg_A Leucyl-tRNA synthetase; editing domain, ligase; 2.00A {Escherichia coli} PDB: 2ajh_A 2aji_A
Probab=94.61 E-value=0.013 Score=64.02 Aligned_cols=77 Identities=16% Similarity=0.081 Sum_probs=54.9
Q ss_pred cccCCccEEEEe-cccccCccCCCeeEEecCCCCeeEEEcCCC----cEEEec---------------cccc-c-ccccC
Q psy5309 360 SCLDSKPVFLVA-ATLRPETMYGQTNAWVRPDMAYIAFTTATG----EVFVCT---------------ERSA-R-NMAYQ 417 (1618)
Q Consensus 360 ~~~~~~~~~iv~-~~~~~~t~~Gt~~v~v~P~~~y~~~~~~~~----~~~i~~---------------~~~~-~-~~~~~ 417 (1618)
+|+.+++++|+. +.+.++ +|||+|++.|+|+..||+.+.. -+.++. +++. . ...|.
T Consensus 94 ~P~~~~~ipV~~ad~V~~~--~GTG~V~~aPah~~~D~~~~~k~~L~i~~vI~~~~g~~~d~~~g~y~~~g~~~ns~~~~ 171 (196)
T 2ajg_A 94 HPLTGEEIPVWAANFVLME--YGTGAVMAVPGHDQRDYEFASKYGLNIKPVILAADGSEPDLSQQALTEKGVLFNSGEFN 171 (196)
T ss_dssp CTTTCCEEEEEEETTCCSS--SSCSEEEECTTTCHHHHHHHHHHTCCCCCCBCCTTSSCCCCSSSCCCSCCCBCSSGGGT
T ss_pred CCCCCCeeEEEEeCCCccC--CCCceEEECCCCCHHHHHHHHHcCCCceeEEeCCcCcccccccccccCCceEecCcccC
Confidence 355677788765 457777 9999999999999888876421 112221 0110 0 13599
Q ss_pred CCchhhhHHHHhhhhccCcce
Q psy5309 418 GFTEVEGKINVLLRLTGQVCI 438 (1618)
Q Consensus 418 g~~~~~a~~~ii~~l~~~~l~ 438 (1618)
|+.+++|+..|++.|+..++.
T Consensus 172 Gl~v~eA~~~Ii~~L~~~g~~ 192 (196)
T 2ajg_A 172 GLDHEAAFNAIADKLTAMGVG 192 (196)
T ss_dssp TCCHHHHHHHHHHHHHHTTSE
T ss_pred CeEHHHHHHHHHHHHHHCCCc
Confidence 999999999999999988876
No 76
>2cyb_A Tyrosyl-tRNA synthetase; rossmann-fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: TYR; 1.80A {Archaeoglobus fulgidus}
Probab=91.68 E-value=0.097 Score=61.59 Aligned_cols=39 Identities=21% Similarity=0.362 Sum_probs=30.7
Q ss_pred EEEEcccee-eCCccceeccCcccChHHHHhhcCccceEEeeccc
Q psy5309 1035 GIRANGHLL-LNSAKMSKSEGNFLTLTEAVKKFSADGMRLCLADS 1078 (1618)
Q Consensus 1035 ~v~~hG~vl-~~G~KMSKS~GNvV~p~eii~~yGaDalRl~l~~~ 1078 (1618)
..+++.++. .+|+|||||.||.|++.+ .+|.+|-.++++
T Consensus 200 ~~l~~pll~~l~G~KMSKS~~n~I~l~d-----~p~~i~~Ki~~a 239 (323)
T 2cyb_A 200 VCLHTPILVGLDGQKMSSSKGNYISVRD-----PPEEVERKIRKA 239 (323)
T ss_dssp EEEEECCCBCTTSSBCCTTTTCSCBTTC-----CHHHHHHHHHTS
T ss_pred eEEecCcccCCCCCcccCCcCceeCCCC-----CHHHHHHHHHhc
Confidence 356677877 899999999999999886 367777776654
No 77
>2wfd_A Leucyl-tRNA synthetase, cytoplasmic; aminoacyl-tRNA synthetase, phosphoprotein, editing domain, nucleotide-binding, hydrolysis of MIS-charged trnas; 3.25A {Homo sapiens}
Probab=91.47 E-value=0.1 Score=58.96 Aligned_cols=36 Identities=17% Similarity=0.211 Sum_probs=28.9
Q ss_pred cccCC-ccEEEEec-ccccCccCCCeeEEecCCCCeeEEE
Q psy5309 360 SCLDS-KPVFLVAA-TLRPETMYGQTNAWVRPDMAYIAFT 397 (1618)
Q Consensus 360 ~~~~~-~~~~iv~~-~~~~~t~~Gt~~v~v~P~~~y~~~~ 397 (1618)
+|+.+ +.++|+.+ .+.++ +|||+|+..|+|+..||.
T Consensus 107 ~Pl~~~~~ipV~~adyV~~~--~GTG~V~~vPaHd~~D~~ 144 (252)
T 2wfd_A 107 APLTSYKVIYVLPMLTIKED--KGTGVVTSVPSDSPDDIA 144 (252)
T ss_dssp CSSCSSSCEEEEECSCCCSS--SSCSSEEECTTTCHHHHH
T ss_pred cCCCCCceeEEEEeCcccCC--CCCCeEEEcCCCCHHHHH
Confidence 46666 46777664 58877 999999999999988887
No 78
>2wfg_A Cytosolic leucyl-tRNA synthetase; ligase, editing domain, hydrolysis of MIS-charged trnas, benzoxaborole, anti-fungal; HET: ZZB; 2.20A {Candida albicans} PDB: 2wfe_A*
Probab=91.09 E-value=0.059 Score=61.25 Aligned_cols=130 Identities=28% Similarity=0.312 Sum_probs=93.7
Q ss_pred eEEEEEEeeccCCcccccc--------CCCCCcEEEEeecCccccccCceEEeCCCCCce--------------------
Q psy5309 306 EYTLIKMRLVKPYPAKLCC--------LDSKPVFLVAATLRPETMYGQTNAWVRPDMAYI-------------------- 357 (1618)
Q Consensus 306 ~y~~~~~~~~~~~~~~~~~--------~~~~~~~l~i~TTrPeTl~g~~avaV~P~~~Y~-------------------- 357 (1618)
+|+.+|+++.+ .+..+.. +++.+.+|+||||||||||||+||||||+..|+
T Consensus 2 ~y~~ik~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~v~TTrP~TL~g~talav~Pe~~yv~v~~~~~~~~i~~~~~~~~~ 80 (261)
T 2wfg_A 2 GYVGIKIRLTD-VAPQAQELFKKESLDVKENKVYLVAATLRPETMYGQTCCFVSPKIDYGVFDAGNGDYFITTERAFKNM 80 (261)
T ss_dssp CEEEEEEEEEE-CCHHHHHHHHHTTCCTTTSEEEEEEEESCGGGGGGCCEEEECTTCEEEEEECSTTEEEEECHHHHHHH
T ss_pred ceeEEEEEEec-CcHHHHHHhcccccccCCCCCEEEEEECCchHHhhhheEEECCCCceEEEEecCceEEEhHHHHHHHH
Confidence 58999999875 4432221 334467999999999999999999999995441
Q ss_pred ---------------------------eecccC-CccEEEEec-ccccCccCCCeeEEecCCCCeeEEEcCCC-------
Q psy5309 358 ---------------------------ALSCLD-SKPVFLVAA-TLRPETMYGQTNAWVRPDMAYIAFTTATG------- 401 (1618)
Q Consensus 358 ---------------------------~~~~~~-~~~~~iv~~-~~~~~t~~Gt~~v~v~P~~~y~~~~~~~~------- 401 (1618)
..+|+. ++.++|+.+ .+.++ +|||+|+..|+|+..||..+..
T Consensus 81 ~~~~~~~~~~~~~~~~~~~G~~L~G~~~~~Pl~~~~~ipV~~adyV~~~--~GTG~V~~vPaHd~~Dy~~~~kl~~~~~~ 158 (261)
T 2wfg_A 81 SFQNLTPKRGYYKPLFTINGKTLIGSRIDAPYAVNKNLRVLPMETVLAT--KGTGVVTCVPSDSPDDFVTTRDLANKPEY 158 (261)
T ss_dssp TTTTCSSSTTCCCCSEEEEHHHHTTCEEECTTCSSCSEEEEECTTCCTT--STTSCEEECTTTCHHHHHHHHHHHHSTTT
T ss_pred HHHhhhhcccccEEEEEEecccccCCEEECCCCCCceeEEEeeccccCC--CCCCeeEEcCCCCHHHHHHHHHhhcchhh
Confidence 114776 467887664 58777 9999999999998887765321
Q ss_pred ----------c-EEEeccc--c-------------------------------------c-cccccCCCchhhhHHHHhh
Q psy5309 402 ----------E-VFVCTER--S-------------------------------------A-RNMAYQGFTEVEGKINVLL 430 (1618)
Q Consensus 402 ----------~-~~i~~~~--~-------------------------------------~-~~~~~~g~~~~~a~~~ii~ 430 (1618)
. +.++... + . ....|.|+.+++|+..|++
T Consensus 159 ygi~~~~~~L~i~~vId~~~~g~~~~~~~~~~~~i~s~~d~~~l~~a~~~~y~~G~~~g~~~~g~f~Gl~v~eA~~~Ii~ 238 (261)
T 2wfg_A 159 YGIEKDWVQTDIVPIVHTEKYGDKCAEFLVNDLKIQSPKDSVQLANAKELAYKEGFYNGTMLIGKYKGDKVEDAKPKVKQ 238 (261)
T ss_dssp TTCCGGGCCCCCCCCEEBTTTBTCHHHHHHHHTTCCSTTCHHHHHHHHHHHHHHHHHHCEECSSTTTTSBHHHHHHHHHH
T ss_pred cCCccccccCCceeEEcCcccCccchhhhhccccccccchhhhhhhhhhhhhhcccccceEeccccCCeEHHHHHHHHHH
Confidence 1 1122210 0 0 0245999999999999999
Q ss_pred hhccCcce
Q psy5309 431 RLTGQVCI 438 (1618)
Q Consensus 431 ~l~~~~l~ 438 (1618)
.|+..++.
T Consensus 239 ~L~~~G~~ 246 (261)
T 2wfg_A 239 DLIDEGLA 246 (261)
T ss_dssp HHHHTTSE
T ss_pred HHHHCCCe
Confidence 99988876
No 79
>2cyb_A Tyrosyl-tRNA synthetase; rossmann-fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: TYR; 1.80A {Archaeoglobus fulgidus}
Probab=88.44 E-value=0.089 Score=61.89 Aligned_cols=38 Identities=18% Similarity=0.327 Sum_probs=30.8
Q ss_pred eeccccccc-cccccccccCCcCCHHHHHHhcCcceeeeehhcc
Q psy5309 1239 IRANGHLLL-NSAKMSKSEGNFLTLTEAVKKFSADGMRLCLADS 1281 (1618)
Q Consensus 1239 v~~hGfvld-~G~KMSKSlGNvI~P~~ii~~yGaD~lRl~l~~~ 1281 (1618)
.+++.++.. +|+|||||.||.|++.+ .+|.+|-.+.+.
T Consensus 201 ~l~~pll~~l~G~KMSKS~~n~I~l~d-----~p~~i~~Ki~~a 239 (323)
T 2cyb_A 201 CLHTPILVGLDGQKMSSSKGNYISVRD-----PPEEVERKIRKA 239 (323)
T ss_dssp EEEECCCBCTTSSBCCTTTTCSCBTTC-----CHHHHHHHHHTS
T ss_pred EEecCcccCCCCCcccCCcCceeCCCC-----CHHHHHHHHHhc
Confidence 556777777 89999999999999876 477888777664
No 80
>1h3f_A Tyrosyl-tRNA synthetase; ligase, aminoacyl-tRNA synthetase; HET: TYE; 2.00A {Thermus thermophilus} SCOP: c.26.1.1 d.66.1.4 PDB: 1h3e_A*
Probab=83.93 E-value=0.58 Score=56.89 Aligned_cols=29 Identities=41% Similarity=0.455 Sum_probs=22.7
Q ss_pred CcEEEEcccee-eCCc-cceeccCcccChHH
Q psy5309 1033 PRGIRANGHLL-LNSA-KMSKSEGNFLTLTE 1061 (1618)
Q Consensus 1033 pk~v~~hG~vl-~~G~-KMSKS~GNvV~p~e 1061 (1618)
|...+++..+. .+|. |||||.||.|+..+
T Consensus 215 ~~~~lt~pll~gldG~~KMSKS~~n~I~L~d 245 (432)
T 1h3f_A 215 PQVCFLMPLLVGLDGREKMSKSLDNYIGLTE 245 (432)
T ss_dssp CCEEEEECCCBCTTSSSBCCGGGTCCCBTTS
T ss_pred CceEeecccccCCCCccccCcCCCCeeCCCC
Confidence 34566677777 7895 99999999988765
No 81
>3tzl_A Tryptophanyl-tRNA synthetase; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta structure; HET: ADP TRP; 2.15A {Campylobacter jejuni subsp} SCOP: c.26.1.0 PDB: 3m5w_A*
Probab=83.33 E-value=0.52 Score=55.19 Aligned_cols=27 Identities=30% Similarity=0.288 Sum_probs=20.0
Q ss_pred cccee--ccccccc-cccccccccCCcCCH
Q psy5309 1236 PRGIR--ANGHLLL-NSAKMSKSEGNFLTL 1262 (1618)
Q Consensus 1236 p~~v~--~hGfvld-~G~KMSKSlGNvI~P 1262 (1618)
|+.++ ++.++.. +|+|||||.||.|+.
T Consensus 174 P~~~~~~~~~~l~~l~G~KMSKS~~n~I~L 203 (322)
T 3tzl_A 174 PEARVNEEVAVVVGTDGAKMSKSYQNTIDI 203 (322)
T ss_dssp CEEECCCSSCCCBCTTSSBCCGGGTCCCBS
T ss_pred chhhhccccccccCCCCCcCCCCCCCceec
Confidence 44444 4566666 899999999999843
No 82
>2jan_A Tyrosyl-tRNA synthetase; protein biosynthesis, aminoacyl-tRNA synthetase, tyrrs, ligase, tyrosine, RNA-binding, ATP-binding; 2.9A {Mycobacterium tuberculosis}
Probab=83.31 E-value=0.59 Score=56.75 Aligned_cols=27 Identities=22% Similarity=0.147 Sum_probs=19.9
Q ss_pred EEEEcccee-eCCccceeccCc-ccChHH
Q psy5309 1035 GIRANGHLL-LNSAKMSKSEGN-FLTLTE 1061 (1618)
Q Consensus 1035 ~v~~hG~vl-~~G~KMSKS~GN-vV~p~e 1061 (1618)
..+.+.++. .+|+|||||.|| .|+..+
T Consensus 217 ~~l~~plL~~ldG~KMSKS~~nsaI~L~d 245 (432)
T 2jan_A 217 HALTVPLVTAADGTKFGKSTGGGSLWLDP 245 (432)
T ss_dssp EEEECCCCBCTTSCBTTBCSSSCBCBSST
T ss_pred cccccccccCCCcCcCCCCCCCCeEEccC
Confidence 344455666 799999999999 776544
No 83
>1n3l_A Tyrosyl-tRNA synthetase; rossmann fold AS catalytic domain, unique anticodon recognit domain, dimer, ligase; 1.18A {Homo sapiens} SCOP: c.26.1.1 PDB: 1q11_A*
Probab=82.20 E-value=0.68 Score=55.38 Aligned_cols=25 Identities=32% Similarity=0.258 Sum_probs=12.4
Q ss_pred EEEcccee-eCCccceeccCc-ccChH
Q psy5309 1036 IRANGHLL-LNSAKMSKSEGN-FLTLT 1060 (1618)
Q Consensus 1036 v~~hG~vl-~~G~KMSKS~GN-vV~p~ 1060 (1618)
.+.+.++. .+|+|||||.|| .|+..
T Consensus 209 ~l~~pll~gldG~KMSKS~~ns~I~L~ 235 (372)
T 1n3l_A 209 HLMNPMVPGLTGSKMSSSEEESKIDLL 235 (372)
T ss_dssp EEEECCCCCSSCC-------CCSCBTT
T ss_pred EEecCccCCCCcccccCCCCCCeEecc
Confidence 44566776 899999999999 67644
No 84
>2o5r_A Glutamyl-tRNA synthetase 1; TM1351, EC 6.1.1.17, glutamate-T ligase 1, glurs 1, structural genomics, joint center for ST genomics, JCSG; 2.34A {Thermotoga maritima}
Probab=80.74 E-value=0.8 Score=56.59 Aligned_cols=61 Identities=18% Similarity=0.162 Sum_probs=42.1
Q ss_pred eeccccccc-cccccccccCCcCCHHHHHH-hcCcceeeeehhccCCC--CcCcccCHHHHHHHHHHhh
Q psy5309 1239 IRANGHLLL-NSAKMSKSEGNFLTLTEAVK-KFSADGMRLCLADSGDS--VEDANFVESMADAAVKKFS 1303 (1618)
Q Consensus 1239 v~~hGfvld-~G~KMSKSlGNvI~P~~ii~-~yGaD~lRl~l~~~~~~--~~D~~fs~~~l~~~~~~~n 1303 (1618)
...++++++ +|+||||+.||+ ...++.+ .|-++++|-|++..+-. ..+..++.+ ++++.+.
T Consensus 249 ~~H~plil~~~G~KLSKR~g~~-~l~~~~~~G~~peal~~~l~~lG~s~~~~~e~~~~~---e~i~~f~ 313 (481)
T 2o5r_A 249 FAHVSTILGPDGKKLSKRHGAT-SVEAFRDMGYLPEALVNYLALLGWSHPEGKELLTLE---ELISSFS 313 (481)
T ss_dssp EEEECCEECTTSSBCCGGGSCC-BHHHHHHHTCCHHHHHHHHHTSSBCCTTCCCCCCHH---HHHHHCC
T ss_pred EEEEeeEECCCCCcccCcCCcc-cHHHHHHCCCCHHHHHHHHHHhCCCCCcccccCCHH---HHHHhCC
Confidence 444577777 899999999999 7888887 48889999998776432 122345554 3444444
No 85
>3tzl_A Tryptophanyl-tRNA synthetase; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta structure; HET: ADP TRP; 2.15A {Campylobacter jejuni subsp} SCOP: c.26.1.0 PDB: 3m5w_A*
Probab=80.52 E-value=0.4 Score=56.14 Aligned_cols=29 Identities=28% Similarity=0.271 Sum_probs=22.1
Q ss_pred cCcEEE--Ecccee-eCCccceeccCcccChH
Q psy5309 1032 WPRGIR--ANGHLL-LNSAKMSKSEGNFLTLT 1060 (1618)
Q Consensus 1032 ~pk~v~--~hG~vl-~~G~KMSKS~GNvV~p~ 1060 (1618)
.|+.++ .+..+. .+|+|||||.+|.|+..
T Consensus 173 ~P~~~~~~~~~~l~~l~G~KMSKS~~n~I~L~ 204 (322)
T 3tzl_A 173 LPEARVNEEVAVVVGTDGAKMSKSYQNTIDIF 204 (322)
T ss_dssp CCEEECCCSSCCCBCTTSSBCCGGGTCCCBSS
T ss_pred CchhhhccccccccCCCCCcCCCCCCCceecC
Confidence 466666 355666 79999999999998543
No 86
>3pz6_A Leurs, leucyl-tRNA synthetase; editing domain, glleurs_CP1, ligase; 2.60A {Giardia intestinalis}
Probab=79.57 E-value=0.71 Score=52.82 Aligned_cols=38 Identities=55% Similarity=0.829 Sum_probs=34.3
Q ss_pred ccCCccEEEEecccccCccCCCeeEEecCCCCeeEEEc
Q psy5309 361 CLDSKPVFLVAATLRPETMYGQTNAWVRPDMAYIAFTT 398 (1618)
Q Consensus 361 ~~~~~~~~iv~~~~~~~t~~Gt~~v~v~P~~~y~~~~~ 398 (1618)
++.|+.++++++|++|+|++|..+++|+|+++|+.+..
T Consensus 74 ~l~g~~v~lvIWTTTPWTLPgNtAiaVnPd~~Yv~v~~ 111 (311)
T 3pz6_A 74 QVDNAKVYLLAATLRPETMVGQTNCWVLPTGRYGAYYI 111 (311)
T ss_dssp TCCSCEEEEEEEESCGGGGGGCCEEEECTTCEEEEEEE
T ss_pred ecCCCCEEEEEEECCchhhhhheEEEECCCCcEEEEEE
Confidence 45678899999999999999999999999999997765
No 87
>2g36_A Tryptophanyl-tRNA synthetase; TM0492, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI, ligase; HET: TRP; 2.50A {Thermotoga maritima}
Probab=77.31 E-value=0.6 Score=55.09 Aligned_cols=29 Identities=38% Similarity=0.413 Sum_probs=20.4
Q ss_pred ccceec-cccccc-cccccccccCCcCCHHH
Q psy5309 1236 PRGIRA-NGHLLL-NSAKMSKSEGNFLTLTE 1264 (1618)
Q Consensus 1236 p~~v~~-hGfvld-~G~KMSKSlGNvI~P~~ 1264 (1618)
|..+++ +-++.. +|+|||||.||.|+..+
T Consensus 188 P~~~~~~~~~l~gldG~KMSKS~~n~I~L~d 218 (340)
T 2g36_A 188 PEAILSRVPKLPGTDGRKMSKSYGNIINLEI 218 (340)
T ss_dssp CEEEECCSCCCCCTTSSCCCGGGTCCCBTTC
T ss_pred chhhhccccccCCCCccccCCCCCCeEeeeC
Confidence 444444 445555 89999999999986543
No 88
>2g36_A Tryptophanyl-tRNA synthetase; TM0492, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI, ligase; HET: TRP; 2.50A {Thermotoga maritima}
Probab=76.54 E-value=0.76 Score=54.19 Aligned_cols=29 Identities=38% Similarity=0.477 Sum_probs=21.8
Q ss_pred CcEEEEc-ccee-eCCccceeccCcccChHH
Q psy5309 1033 PRGIRAN-GHLL-LNSAKMSKSEGNFLTLTE 1061 (1618)
Q Consensus 1033 pk~v~~h-G~vl-~~G~KMSKS~GNvV~p~e 1061 (1618)
|..++.| ..+. .+|+|||||.||.|+..+
T Consensus 188 P~~~~~~~~~l~gldG~KMSKS~~n~I~L~d 218 (340)
T 2g36_A 188 PEAILSRVPKLPGTDGRKMSKSYGNIINLEI 218 (340)
T ss_dssp CEEEECCSCCCCCTTSSCCCGGGTCCCBTTC
T ss_pred chhhhccccccCCCCccccCCCCCCeEeeeC
Confidence 6666654 4555 789999999999997544
No 89
>2dlc_X Tyrosyl-tRNA synthetase, cytoplasmic; tyrrs, ligase-tRNA complex; HET: 2MG OMG M2G PSU 6IA 5MC 5MU 1MA YMP; 2.40A {Saccharomyces cerevisiae}
Probab=75.92 E-value=1.3 Score=53.32 Aligned_cols=26 Identities=31% Similarity=0.252 Sum_probs=10.5
Q ss_pred EEEEcccee-eC-CccceeccCcc-cChH
Q psy5309 1035 GIRANGHLL-LN-SAKMSKSEGNF-LTLT 1060 (1618)
Q Consensus 1035 ~v~~hG~vl-~~-G~KMSKS~GNv-V~p~ 1060 (1618)
..+++.++. .+ |+|||||.||. |+..
T Consensus 212 ~~l~~pll~gl~~G~KMSKS~~ns~I~L~ 240 (394)
T 2dlc_X 212 AHLMNPMVPGLAQGGKMSASDPNSKIDLL 240 (394)
T ss_dssp EEEEECCCCCCC----------CCSCBTT
T ss_pred EEEecccccCCCCCCcCCCCCCCCEEecc
Confidence 344566776 78 99999999996 7643
No 90
>1y42_X Tyrosyl-tRNA synthetase, mitochondrial; CYT-18, tRNA ligase, group I intron; HET: TYR; 1.95A {Neurospora crassa} PDB: 2rkj_A
Probab=75.70 E-value=0.71 Score=55.47 Aligned_cols=27 Identities=30% Similarity=0.099 Sum_probs=20.5
Q ss_pred ceeccccccc-cccccccccCCcCCHHH
Q psy5309 1238 GIRANGHLLL-NSAKMSKSEGNFLTLTE 1264 (1618)
Q Consensus 1238 ~v~~hGfvld-~G~KMSKSlGNvI~P~~ 1264 (1618)
..+++.++.. +|+|||||.||.|+..+
T Consensus 279 ~~l~~pll~~ldG~KMSKS~~naI~L~d 306 (392)
T 1y42_X 279 VGFTVPLLTDSSGAKFGKSAGNAIWLDP 306 (392)
T ss_dssp EEEECCCCBCTTCCBTTBCSSSBCBSST
T ss_pred cccccccCcCCchhhccCCCCCeeeccC
Confidence 3445666666 89999999999986544
No 91
>1j09_A Glutamyl-tRNA synthetase; glurs-ATP-Glu complex, riken structural genomics/proteomics initiative, RSGI, structural genomics, ligase; HET: GLU ATP; 1.80A {Thermus thermophilus} SCOP: a.97.1.1 c.26.1.1 PDB: 1n75_A* 1n77_A* 1n78_A* 2cuz_A* 2cv0_A* 2cv1_A* 2cv2_A* 2dxi_A* 1g59_A 1gln_A
Probab=75.00 E-value=1.2 Score=54.62 Aligned_cols=54 Identities=22% Similarity=0.137 Sum_probs=39.7
Q ss_pred eccccccc-cccccccccCCcCCHHHHHH-hcCcceeeeehhccCCCCcC--cccCHHH
Q psy5309 1240 RANGHLLL-NSAKMSKSEGNFLTLTEAVK-KFSADGMRLCLADSGDSVED--ANFVESM 1294 (1618)
Q Consensus 1240 ~~hGfvld-~G~KMSKSlGNvI~P~~ii~-~yGaD~lRl~l~~~~~~~~D--~~fs~~~ 1294 (1618)
..++++++ +|+||||+.||. ...++.+ .|-++++|-||+..+-...+ ..|+.+.
T Consensus 231 ~h~~li~~~~g~klSKR~g~~-~l~~~~~~G~~peal~~~l~~lG~~~~~~~~~~~~~e 288 (468)
T 1j09_A 231 YHMPLLRNPDKTKISKRKSHT-SLDWYKAEGFLPEALRNYLCLMGFSMPDGREIFTLEE 288 (468)
T ss_dssp EEECCCBCTTSCBCCTTTSCC-BHHHHHHTTCCHHHHHHHHHHHSCCCTTCCSCCCHHH
T ss_pred EEeeeeeCCCCCccccccchh-hHHHHHHCCCCHHHHHHHHHHhccCCcccccCCCHHH
Confidence 34567777 999999999999 6777766 48899999999876543222 4577553
No 92
>2ja2_A Glutamyl-tRNA synthetase; non-discriminating glutamyl-tRNA aminoacylation, protein biosynthesis, aminoacyl-tRNA synthetase, ligase; 1.65A {Mycobacterium tuberculosis} PDB: 3pny_A 3pnv_A
Probab=72.57 E-value=1.6 Score=54.02 Aligned_cols=53 Identities=23% Similarity=0.156 Sum_probs=39.4
Q ss_pred ccccccc-cccccccccCCcCCHHHHHH-hcCcceeeeehhccCCCC--cCcccCHHH
Q psy5309 1241 ANGHLLL-NSAKMSKSEGNFLTLTEAVK-KFSADGMRLCLADSGDSV--EDANFVESM 1294 (1618)
Q Consensus 1241 ~hGfvld-~G~KMSKSlGNvI~P~~ii~-~yGaD~lRl~l~~~~~~~--~D~~fs~~~ 1294 (1618)
.+.++++ +|+||||+.|++ +..++.+ .|.++++|.|++..+... ....||.+.
T Consensus 246 h~plil~~~g~KLSKR~g~~-~l~~~r~~G~~peAl~~~l~~lG~s~~~~~e~~s~~e 302 (498)
T 2ja2_A 246 HLPTVLGEGTKKLSKRDPQS-NLFAHRDRGFIPEGLLNYLALLGWSIADDHDLFGLDE 302 (498)
T ss_dssp EECCEECSSSSBCCTTSGGG-BHHHHHHHTCCHHHHHHHHHTSSCCSCSSCCCCCHHH
T ss_pred EeeeeECCCCCcccccCCcc-cHHHHHhCCCCHHHHHHHHHHhCCCCCcccccCCHHH
Confidence 4466777 899999999995 7777776 489999999998875432 225677654
No 93
>1y42_X Tyrosyl-tRNA synthetase, mitochondrial; CYT-18, tRNA ligase, group I intron; HET: TYR; 1.95A {Neurospora crassa} PDB: 2rkj_A
Probab=72.43 E-value=1.3 Score=53.33 Aligned_cols=28 Identities=29% Similarity=0.092 Sum_probs=22.3
Q ss_pred cEEEEcccee-eCCccceeccCcccChHH
Q psy5309 1034 RGIRANGHLL-LNSAKMSKSEGNFLTLTE 1061 (1618)
Q Consensus 1034 k~v~~hG~vl-~~G~KMSKS~GNvV~p~e 1061 (1618)
...+.+.++. .+|+|||||.||.|+..+
T Consensus 278 ~~~l~~pll~~ldG~KMSKS~~naI~L~d 306 (392)
T 1y42_X 278 CVGFTVPLLTDSSGAKFGKSAGNAIWLDP 306 (392)
T ss_dssp CEEEECCCCBCTTCCBTTBCSSSBCBSST
T ss_pred ccccccccCcCCchhhccCCCCCeeeccC
Confidence 3556777777 899999999999987554
No 94
>2ts1_A Tyrosyl-tRNA synthetase; ligase (synthetase); 2.30A {Geobacillus stearothermophilus} SCOP: c.26.1.1 PDB: 3ts1_A* 1tyd_E* 1tya_E* 1tyc_A 1tyb_E* 4ts1_A* 1jh3_A
Probab=72.41 E-value=0.85 Score=55.18 Aligned_cols=25 Identities=16% Similarity=0.140 Sum_probs=18.3
Q ss_pred eccccccc-cccccccccCCcCCHHH
Q psy5309 1240 RANGHLLL-NSAKMSKSEGNFLTLTE 1264 (1618)
Q Consensus 1240 ~~hGfvld-~G~KMSKSlGNvI~P~~ 1264 (1618)
+++.++.. +|+|||||.||.|+..+
T Consensus 218 lt~pll~~ldG~KMSKS~~naI~L~d 243 (419)
T 2ts1_A 218 LTIPLVTKADGTKFGKTESGTIWLDK 243 (419)
T ss_dssp EEECCCCCTTSCCTTCCSSCCCBSST
T ss_pred cccccccCCCcccccCCCCCeEecCC
Confidence 34445555 89999999999986543
No 95
>2pid_A Tyrosyl-tRNA synthetase; aminoacyl-tRNA synthetase, protein-substrate complex, ATP-BI ligase, mitochondrion, nucleotide-binding, protein biosynth; HET: YSA; 2.20A {Homo sapiens} PDB: 3zxi_A*
Probab=72.02 E-value=0.73 Score=54.69 Aligned_cols=25 Identities=28% Similarity=0.246 Sum_probs=7.0
Q ss_pred eccccccc-cccccccccCCcCCHHH
Q psy5309 1240 RANGHLLL-NSAKMSKSEGNFLTLTE 1264 (1618)
Q Consensus 1240 ~~hGfvld-~G~KMSKSlGNvI~P~~ 1264 (1618)
+++.++.. +|+|||||.||.|+..+
T Consensus 242 l~~pll~~ldG~KMSKS~~naI~L~d 267 (356)
T 2pid_A 242 ITVPLITSTTGAKLGKSAGNAVWLNR 267 (356)
T ss_dssp EEECCCC-------------CCBSST
T ss_pred cccccccCCCcccccCCCCCeeeccC
Confidence 34445555 89999999999886443
No 96
>1jil_A Tyrrs, tyrosyl-tRNA synthetase; truncation, based inhibitor design, ligase; HET: 485; 2.20A {Staphylococcus aureus} SCOP: c.26.1.1 PDB: 1jij_A* 1jii_A* 1jik_A*
Probab=71.87 E-value=0.95 Score=54.91 Aligned_cols=26 Identities=19% Similarity=0.044 Sum_probs=18.7
Q ss_pred eeccccccc-cccccccccCCcCCHHH
Q psy5309 1239 IRANGHLLL-NSAKMSKSEGNFLTLTE 1264 (1618)
Q Consensus 1239 v~~hGfvld-~G~KMSKSlGNvI~P~~ 1264 (1618)
.+++-++.. +|+|||||.||.|+..+
T Consensus 218 ~l~~pll~~ldG~KMSKS~~naI~L~d 244 (420)
T 1jil_A 218 GLTIPLVTKSDGKKFGKSESGAVWLDA 244 (420)
T ss_dssp EEEECCCBCTTSCBTTBCSSSBCBSST
T ss_pred EeecccccCCccccccCCCCCeEecCC
Confidence 334455555 89999999999986443
No 97
>2yxn_A Tyrosyl-tRNA synthetase; tRNA synthetases class I, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: AZY; 1.80A {Escherichia coli str} PDB: 1wq3_A* 1wq4_A* 1x8x_A* 1vbn_A* 1vbm_A*
Probab=71.44 E-value=0.87 Score=53.35 Aligned_cols=24 Identities=21% Similarity=0.245 Sum_probs=17.8
Q ss_pred ccccccc-cccccccccCCcCCHHH
Q psy5309 1241 ANGHLLL-NSAKMSKSEGNFLTLTE 1264 (1618)
Q Consensus 1241 ~hGfvld-~G~KMSKSlGNvI~P~~ 1264 (1618)
++..+.. +|+|||||.||.|+..+
T Consensus 224 ~~pll~gldG~KMSKS~~n~I~L~d 248 (322)
T 2yxn_A 224 TVPLITKADGTKFGKTEGGAVWLDP 248 (322)
T ss_dssp ECCCCBCTTSCBTTEETTEECBSST
T ss_pred ccCccCCCCcccccCCCCCeeeccC
Confidence 3444444 89999999999887554
No 98
>2el7_A Tryptophanyl-tRNA synthetase; aminoacyl-tRNA synthetase, translation, structural GEN NPPSFA; 2.50A {Thermus thermophilus}
Probab=71.27 E-value=0.91 Score=53.52 Aligned_cols=21 Identities=43% Similarity=0.382 Sum_probs=16.3
Q ss_pred ccccc-cc-cccccccCCcCCHH
Q psy5309 1243 GHLLL-NS-AKMSKSEGNFLTLT 1263 (1618)
Q Consensus 1243 Gfvld-~G-~KMSKSlGNvI~P~ 1263 (1618)
-++.. +| +|||||.||.|+..
T Consensus 185 p~l~gldG~~KMSKS~~n~I~L~ 207 (337)
T 2el7_A 185 PRVPGIDGKAKMSKSLGNTIGLL 207 (337)
T ss_dssp CCCBCTTSSSBCCTTTTCCCBSS
T ss_pred ccccCCCCccccCCCCCCeeeCc
Confidence 35555 89 99999999988643
No 99
>3vgj_A Tyrosyl-tRNA synthetase, putative; tyrrs, ligase; HET: YAP; 2.21A {Plasmodium falciparum}
Probab=71.05 E-value=2.4 Score=50.51 Aligned_cols=24 Identities=38% Similarity=0.492 Sum_probs=17.4
Q ss_pred EEEcccee-e-CC-ccceeccC-cccCh
Q psy5309 1036 IRANGHLL-L-NS-AKMSKSEG-NFLTL 1059 (1618)
Q Consensus 1036 v~~hG~vl-~-~G-~KMSKS~G-NvV~p 1059 (1618)
++.+.++. . +| +|||||.+ |.|+.
T Consensus 232 ~l~~p~l~gL~dG~~KMSKS~~~~~I~L 259 (373)
T 3vgj_A 232 ILSHGMLPGLLEGQEKMSKSDENSAIFM 259 (373)
T ss_dssp EEEBCCCCCSSTTCCSCCSSSTTCCCBT
T ss_pred EEeCCeeecCCCCCCCCcCCCCCCeeec
Confidence 45666666 5 78 49999994 77764
No 100
>1yi8_B Tryptophanyl-tRNA synthetase; ligase; HET: TRP; 2.10A {Deinococcus radiodurans} PDB: 1yia_B* 1yid_B* 2a4m_A*
Probab=70.97 E-value=1 Score=53.32 Aligned_cols=27 Identities=37% Similarity=0.383 Sum_probs=19.1
Q ss_pred ccceec-cccccc-ccc-ccccccCCcCCH
Q psy5309 1236 PRGIRA-NGHLLL-NSA-KMSKSEGNFLTL 1262 (1618)
Q Consensus 1236 p~~v~~-hGfvld-~G~-KMSKSlGNvI~P 1262 (1618)
|..+++ +.++.. +|+ |||||.||.|+.
T Consensus 197 P~~~~~~~~~l~~ldG~~KMSKS~~n~I~L 226 (351)
T 1yi8_B 197 PQAQLSRVPRLPGLDGQAKMSKSLGNAIAL 226 (351)
T ss_dssp CEEEECSSCSCCCTTSSSCCCTTTTCCCBT
T ss_pred CeeeeecCccccCCCCccccCCCCCCeecC
Confidence 455554 445555 887 999999998764
No 101
>3afh_A Glutamyl-tRNA synthetase 2; protein-substrate complex, aminoacyl-tRNA synthetase, ATP-binding, ligase, nucleotide-binding; HET: GSU; 2.00A {Thermotoga maritima} PDB: 3akz_B*
Probab=70.84 E-value=1.7 Score=53.56 Aligned_cols=53 Identities=19% Similarity=0.115 Sum_probs=39.4
Q ss_pred ccccccc-cccccccccCCcCCHHHHHH-hcCcceeeeehhccCCCC-cCcccCHHH
Q psy5309 1241 ANGHLLL-NSAKMSKSEGNFLTLTEAVK-KFSADGMRLCLADSGDSV-EDANFVESM 1294 (1618)
Q Consensus 1241 ~hGfvld-~G~KMSKSlGNvI~P~~ii~-~yGaD~lRl~l~~~~~~~-~D~~fs~~~ 1294 (1618)
.+.++++ +|+||||+.|+ ++..++.+ .|-++++|-||+..+... .+..||.+.
T Consensus 244 H~pli~~~~g~KLSKR~g~-~~l~~~r~~G~~peal~n~l~~lG~s~~~~e~~s~~e 299 (488)
T 3afh_A 244 HIPLILGSDRTPLSKRHGA-TSVEHFRREGILSRALMNYLALLGWRVEGDEIFTIEE 299 (488)
T ss_dssp EECCEECTTSSBCCTTTSC-CBHHHHHHHTCCHHHHHHHHHHTTCCCSSCSCCCHHH
T ss_pred EEeeeeCCCCCcccCcCCc-ccHHHHHHCCCCHHHHHHHHHHhCCCCcccccCCHHH
Confidence 4567777 89999999999 57888776 488999999998865432 225566553
No 102
>2jan_A Tyrosyl-tRNA synthetase; protein biosynthesis, aminoacyl-tRNA synthetase, tyrrs, ligase, tyrosine, RNA-binding, ATP-binding; 2.9A {Mycobacterium tuberculosis}
Probab=70.35 E-value=1.1 Score=54.26 Aligned_cols=24 Identities=25% Similarity=0.202 Sum_probs=16.9
Q ss_pred eccccccc-cccccccccCC-cCCHH
Q psy5309 1240 RANGHLLL-NSAKMSKSEGN-FLTLT 1263 (1618)
Q Consensus 1240 ~~hGfvld-~G~KMSKSlGN-vI~P~ 1263 (1618)
+++-++.. +|+|||||.|| .|+..
T Consensus 219 l~~plL~~ldG~KMSKS~~nsaI~L~ 244 (432)
T 2jan_A 219 LTVPLVTAADGTKFGKSTGGGSLWLD 244 (432)
T ss_dssp EECCCCBCTTSCBTTBCSSSCBCBSS
T ss_pred cccccccCCCcCcCCCCCCCCeEEcc
Confidence 33444554 89999999999 66543
No 103
>1yi8_B Tryptophanyl-tRNA synthetase; ligase; HET: TRP; 2.10A {Deinococcus radiodurans} PDB: 1yia_B* 1yid_B* 2a4m_A*
Probab=69.42 E-value=1.4 Score=52.21 Aligned_cols=29 Identities=38% Similarity=0.391 Sum_probs=21.3
Q ss_pred cCcEEEE-cccee-eCCc-cceeccCcccChH
Q psy5309 1032 WPRGIRA-NGHLL-LNSA-KMSKSEGNFLTLT 1060 (1618)
Q Consensus 1032 ~pk~v~~-hG~vl-~~G~-KMSKS~GNvV~p~ 1060 (1618)
.|..++. +..+. .+|+ |||||.||.|+..
T Consensus 196 ~P~~~~~~~~~l~~ldG~~KMSKS~~n~I~L~ 227 (351)
T 1yi8_B 196 EPQAQLSRVPRLPGLDGQAKMSKSLGNAIALG 227 (351)
T ss_dssp CCEEEECSSCSCCCTTSSSCCCTTTTCCCBTT
T ss_pred CCeeeeecCccccCCCCccccCCCCCCeecCC
Confidence 3666665 44555 7897 9999999988644
No 104
>2yxn_A Tyrosyl-tRNA synthetase; tRNA synthetases class I, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: AZY; 1.80A {Escherichia coli str} PDB: 1wq3_A* 1wq4_A* 1x8x_A* 1vbn_A* 1vbm_A*
Probab=69.06 E-value=1.5 Score=51.40 Aligned_cols=26 Identities=19% Similarity=0.152 Sum_probs=20.0
Q ss_pred EEEcccee-eCCccceeccCcccChHH
Q psy5309 1036 IRANGHLL-LNSAKMSKSEGNFLTLTE 1061 (1618)
Q Consensus 1036 v~~hG~vl-~~G~KMSKS~GNvV~p~e 1061 (1618)
.+.+..+. .+|+|||||.||.|+..+
T Consensus 222 ~l~~pll~gldG~KMSKS~~n~I~L~d 248 (322)
T 2yxn_A 222 GLTVPLITKADGTKFGKTEGGAVWLDP 248 (322)
T ss_dssp EEECCCCBCTTSCBTTEETTEECBSST
T ss_pred eeccCccCCCCcccccCCCCCeeeccC
Confidence 34555666 689999999999887665
No 105
>3al0_C Glutamyl-tRNA(Gln) amidotransferase subunit C, GL tRNA synthetase 2; protein-RNA complex, ligase-RNA complex; HET: GSU; 3.37A {Thermotoga maritima}
Probab=68.76 E-value=1.2 Score=56.24 Aligned_cols=44 Identities=16% Similarity=0.130 Sum_probs=35.3
Q ss_pred EEEEcccee-eCCccceeccCcccChHHHHhh-cCccceEEeecccC
Q psy5309 1035 GIRANGHLL-LNSAKMSKSEGNFLTLTEAVKK-FSADGMRLCLADSG 1079 (1618)
Q Consensus 1035 ~v~~hG~vl-~~G~KMSKS~GNvV~p~eii~~-yGaDalRl~l~~~~ 1079 (1618)
.+.++++++ .+|+||||+.|+ +...++.++ |-++++|-|++..+
T Consensus 345 ~~~hlpli~~~~g~KLSKR~g~-~~l~~~~~~G~~peal~~~l~~lG 390 (592)
T 3al0_C 345 VFMHIPLILGSDRTPLSKRHGA-TSVEHFRREGILSRALMNYLALLG 390 (592)
T ss_dssp BCCEECCCBCTTSSBCCTTTCS-SBHHHHHHTTCCHHHHHHHHTTTT
T ss_pred eEEEeeeeeCCCCCcccccCCc-ccHHHHHHCCCCHHHHHHHHHHhC
Confidence 345566666 789999999999 588888874 88999999988664
No 106
>2el7_A Tryptophanyl-tRNA synthetase; aminoacyl-tRNA synthetase, translation, structural GEN NPPSFA; 2.50A {Thermus thermophilus}
Probab=68.62 E-value=1.3 Score=52.27 Aligned_cols=29 Identities=38% Similarity=0.504 Sum_probs=20.9
Q ss_pred CcEEEEc--ccee-eCC-ccceeccCcccChHH
Q psy5309 1033 PRGIRAN--GHLL-LNS-AKMSKSEGNFLTLTE 1061 (1618)
Q Consensus 1033 pk~v~~h--G~vl-~~G-~KMSKS~GNvV~p~e 1061 (1618)
|..++.. ..+. .+| +|||||.||.|+..+
T Consensus 176 P~~~~~~~~p~l~gldG~~KMSKS~~n~I~L~d 208 (337)
T 2el7_A 176 PQALLNPEAPRVPGIDGKAKMSKSLGNTIGLLE 208 (337)
T ss_dssp CEEECCTTSCCCBCTTSSSBCCTTTTCCCBSSS
T ss_pred CeeecccccccccCCCCccccCCCCCCeeeCcC
Confidence 5555542 4556 789 999999999886543
No 107
>1h3f_A Tyrosyl-tRNA synthetase; ligase, aminoacyl-tRNA synthetase; HET: TYE; 2.00A {Thermus thermophilus} SCOP: c.26.1.1 d.66.1.4 PDB: 1h3e_A*
Probab=67.98 E-value=1.3 Score=53.77 Aligned_cols=28 Identities=36% Similarity=0.281 Sum_probs=20.4
Q ss_pred cceeccccccc-ccc-ccccccCCcCCHHH
Q psy5309 1237 RGIRANGHLLL-NSA-KMSKSEGNFLTLTE 1264 (1618)
Q Consensus 1237 ~~v~~hGfvld-~G~-KMSKSlGNvI~P~~ 1264 (1618)
...+++.++.. +|. |||||.||.|+..+
T Consensus 216 ~~~lt~pll~gldG~~KMSKS~~n~I~L~d 245 (432)
T 1h3f_A 216 QVCFLMPLLVGLDGREKMSKSLDNYIGLTE 245 (432)
T ss_dssp CEEEEECCCBCTTSSSBCCGGGTCCCBTTS
T ss_pred ceEeecccccCCCCccccCcCCCCeeCCCC
Confidence 34455666665 885 99999999887654
No 108
>2pid_A Tyrosyl-tRNA synthetase; aminoacyl-tRNA synthetase, protein-substrate complex, ATP-BI ligase, mitochondrion, nucleotide-binding, protein biosynth; HET: YSA; 2.20A {Homo sapiens} PDB: 3zxi_A*
Probab=67.97 E-value=1.4 Score=52.31 Aligned_cols=27 Identities=26% Similarity=0.118 Sum_probs=9.1
Q ss_pred EEEEcccee-eCCccceeccCcccChHH
Q psy5309 1035 GIRANGHLL-LNSAKMSKSEGNFLTLTE 1061 (1618)
Q Consensus 1035 ~v~~hG~vl-~~G~KMSKS~GNvV~p~e 1061 (1618)
..+.+.++. .+|+|||||.||.|+..+
T Consensus 240 ~~l~~pll~~ldG~KMSKS~~naI~L~d 267 (356)
T 2pid_A 240 FGITVPLITSTTGAKLGKSAGNAVWLNR 267 (356)
T ss_dssp EEEEECCCC-------------CCBSST
T ss_pred cccccccccCCCcccccCCCCCeeeccC
Confidence 344556666 799999999999886554
No 109
>2ts1_A Tyrosyl-tRNA synthetase; ligase (synthetase); 2.30A {Geobacillus stearothermophilus} SCOP: c.26.1.1 PDB: 3ts1_A* 1tyd_E* 1tya_E* 1tyc_A 1tyb_E* 4ts1_A* 1jh3_A
Probab=67.81 E-value=1.7 Score=52.69 Aligned_cols=27 Identities=15% Similarity=0.021 Sum_probs=20.8
Q ss_pred EEEEcccee-eCCccceeccCcccChHH
Q psy5309 1035 GIRANGHLL-LNSAKMSKSEGNFLTLTE 1061 (1618)
Q Consensus 1035 ~v~~hG~vl-~~G~KMSKS~GNvV~p~e 1061 (1618)
..+.+..+. .+|+|||||.||.|+..+
T Consensus 216 ~~lt~pll~~ldG~KMSKS~~naI~L~d 243 (419)
T 2ts1_A 216 FGLTIPLVTKADGTKFGKTESGTIWLDK 243 (419)
T ss_dssp EEEEECCCCCTTSCCTTCCSSCCCBSST
T ss_pred eecccccccCCCcccccCCCCCeEecCC
Confidence 445566666 799999999999986554
No 110
>1jil_A Tyrrs, tyrosyl-tRNA synthetase; truncation, based inhibitor design, ligase; HET: 485; 2.20A {Staphylococcus aureus} SCOP: c.26.1.1 PDB: 1jij_A* 1jii_A* 1jik_A*
Probab=67.59 E-value=1.8 Score=52.51 Aligned_cols=27 Identities=19% Similarity=-0.007 Sum_probs=20.9
Q ss_pred EEEEcccee-eCCccceeccCcccChHH
Q psy5309 1035 GIRANGHLL-LNSAKMSKSEGNFLTLTE 1061 (1618)
Q Consensus 1035 ~v~~hG~vl-~~G~KMSKS~GNvV~p~e 1061 (1618)
..+.+..+. .+|+|||||.||.|+..+
T Consensus 217 ~~l~~pll~~ldG~KMSKS~~naI~L~d 244 (420)
T 1jil_A 217 YGLTIPLVTKSDGKKFGKSESGAVWLDA 244 (420)
T ss_dssp EEEEECCCBCTTSCBTTBCSSSBCBSST
T ss_pred eEeecccccCCccccccCCCCCeEecCC
Confidence 445566666 799999999999986554
No 111
>1n3l_A Tyrosyl-tRNA synthetase; rossmann fold AS catalytic domain, unique anticodon recognit domain, dimer, ligase; 1.18A {Homo sapiens} SCOP: c.26.1.1 PDB: 1q11_A*
Probab=66.02 E-value=1.2 Score=53.15 Aligned_cols=24 Identities=29% Similarity=0.182 Sum_probs=10.8
Q ss_pred eccccccc-cccccccccCC-cCCHH
Q psy5309 1240 RANGHLLL-NSAKMSKSEGN-FLTLT 1263 (1618)
Q Consensus 1240 ~~hGfvld-~G~KMSKSlGN-vI~P~ 1263 (1618)
+++.++.. +|+|||||.|| .|+..
T Consensus 210 l~~pll~gldG~KMSKS~~ns~I~L~ 235 (372)
T 1n3l_A 210 LMNPMVPGLTGSKMSSSEEESKIDLL 235 (372)
T ss_dssp EEECCCCCSSCC-------CCSCBTT
T ss_pred EecCccCCCCcccccCCCCCCeEecc
Confidence 34556665 89999999999 57543
No 112
>2zp1_A Tyrosyl-tRNA synthetase; tRNA synthetases class I, ligase, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, nucleotide-binding; HET: IYR; 1.70A {Methanocaldococcus jannaschii} PDB: 1zh6_A* 1j1u_A* 1u7d_A 2q1g_A* 2pxh_A* 1zh0_A* 2q1i_A* 2ag6_A* 3qe4_A* 3d6u_A* 3d6v_A* 1u7x_A 3n2y_A* 2hgz_A*
Probab=65.99 E-value=1.5 Score=51.14 Aligned_cols=23 Identities=39% Similarity=0.497 Sum_probs=17.8
Q ss_pred eccccccc-cc-cccccccCCcCCH
Q psy5309 1240 RANGHLLL-NS-AKMSKSEGNFLTL 1262 (1618)
Q Consensus 1240 ~~hGfvld-~G-~KMSKSlGNvI~P 1262 (1618)
.++.++.. +| +|||||.||.|+.
T Consensus 191 ~~~~~l~~l~G~~KMSKS~~~~I~L 215 (314)
T 2zp1_A 191 IHNPVLTGLDGEGKMSSSKGNFIAV 215 (314)
T ss_dssp EEECCCBCTTSSSBCCTTTTCSCBT
T ss_pred eeccccccCCcccccCCCCcceecC
Confidence 44556666 89 7999999999864
No 113
>3tze_A Tryptophanyl-tRNA synthetase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, amino acylation; HET: TRP; 2.60A {Encephalitozoon cuniculi}
Probab=64.79 E-value=3.1 Score=50.07 Aligned_cols=25 Identities=28% Similarity=0.186 Sum_probs=18.7
Q ss_pred EEEcccee-eCC--ccceecc-CcccChH
Q psy5309 1036 IRANGHLL-LNS--AKMSKSE-GNFLTLT 1060 (1618)
Q Consensus 1036 v~~hG~vl-~~G--~KMSKS~-GNvV~p~ 1060 (1618)
++.+.++. .+| +|||||. +|.|...
T Consensus 274 ~l~~~~l~gLdG~~~KMSKS~~~~~I~L~ 302 (406)
T 3tze_A 274 SIYVSLLPDLKGVNRKMSASDPNSSIYLD 302 (406)
T ss_dssp EEEECCCCCTTSCCCCSSCSCGGGSCBTT
T ss_pred eeccCcccCCCCCCcCCCCCCCCCcccCC
Confidence 44666776 788 6999999 6888543
No 114
>1i6k_A TRPRS, tryptophanyl-tRNA synthetase; class I tRNA synthetase, AARS, induced FIT, ligase; HET: TYM; 1.72A {Geobacillus stearothermophilus} SCOP: c.26.1.1 PDB: 1i6l_A* 1i6m_A* 1m83_A* 1mau_A* 1maw_A* 1mb2_A* 2ov4_A* 3fhj_A* 3fi0_A* 1d2r_A 3u1v_A
Probab=61.52 E-value=3.7 Score=48.10 Aligned_cols=33 Identities=27% Similarity=0.293 Sum_probs=21.1
Q ss_pred ccceec--cccccc-cc--cccccccCC-c--C----CHHHHHHh
Q psy5309 1236 PRGIRA--NGHLLL-NS--AKMSKSEGN-F--L----TLTEAVKK 1268 (1618)
Q Consensus 1236 p~~v~~--hGfvld-~G--~KMSKSlGN-v--I----~P~~ii~~ 1268 (1618)
|..+++ +.++.. +| +|||||.|| . | +|.++-++
T Consensus 172 P~~li~~~~~~l~gl~G~~~KMSKS~~n~~~~I~L~d~~~~i~~K 216 (328)
T 1i6k_A 172 PEARIPKVGARIMSLVDPTKKMSKSDPNPKAYITLLDDAKTIEKK 216 (328)
T ss_dssp CEEECCSSSSSCBCSSCTTSBCCTTCSCGGGCCBTTCCHHHHHHH
T ss_pred CeeeeccccccccCCCCCccCCCCCCCCcCceeeecCCHHHHHHH
Confidence 444443 445555 78 999999999 5 6 44555443
No 115
>2yy5_A Tryptophanyl-tRNA synthetase; aminoaccyl tRNA synthetase, structural genomics, NPPSFA; HET: WSA; 2.55A {Mycoplasma pneumoniae}
Probab=61.26 E-value=2.1 Score=50.55 Aligned_cols=27 Identities=30% Similarity=0.388 Sum_probs=18.7
Q ss_pred ccceec--cccccc-cc--cccccccCC---cCCH
Q psy5309 1236 PRGIRA--NGHLLL-NS--AKMSKSEGN---FLTL 1262 (1618)
Q Consensus 1236 p~~v~~--hGfvld-~G--~KMSKSlGN---vI~P 1262 (1618)
|..+++ +.++.. +| +|||||.|| .|+.
T Consensus 182 P~~l~~~~~~~l~gL~g~~~KMSKS~~n~~~~I~L 216 (348)
T 2yy5_A 182 PQFVQNKDTNRIMDLFDPTKKMSKSSKNQNGVIYL 216 (348)
T ss_dssp CEEECCTTTTTCBCSSCTTSBCCSSCSCGGGCCBT
T ss_pred CeeecccccccccCCCCcchhcCCCCCCCCceEee
Confidence 444443 455555 77 999999999 7754
No 116
>3i05_A Tryptophanyl-tRNA synthetase; APO tRNA-ligase, ATP-binding, aminoacyl-tRNA synthetase, LIG nucleotide-binding, protein biosynthesis; 2.80A {Trypanosoma brucei} SCOP: c.26.1.0
Probab=60.89 E-value=3.1 Score=49.94 Aligned_cols=30 Identities=20% Similarity=0.131 Sum_probs=11.4
Q ss_pred eeccccccc-cc--cccccccCCcCC----HHHHHHh
Q psy5309 1239 IRANGHLLL-NS--AKMSKSEGNFLT----LTEAVKK 1268 (1618)
Q Consensus 1239 v~~hGfvld-~G--~KMSKSlGNvI~----P~~ii~~ 1268 (1618)
++++-++.. +| +|||||.||.|+ |.++-+|
T Consensus 255 ~l~~~~l~gLdG~~~KMSKS~~~~I~L~D~p~~i~kK 291 (395)
T 3i05_A 255 VIHSKFFPGLSGPKGKMSSSSGTAVLLTDTEKMVKDK 291 (395)
T ss_dssp EEEECCCCCC-------------CCBTTCCHHHHHHH
T ss_pred eeccccccCCCCCcccCCCCCCCcccCCCCHHHHHHH
Confidence 455667766 88 799999999994 4555444
No 117
>2yy5_A Tryptophanyl-tRNA synthetase; aminoaccyl tRNA synthetase, structural genomics, NPPSFA; HET: WSA; 2.55A {Mycoplasma pneumoniae}
Probab=59.39 E-value=2.7 Score=49.63 Aligned_cols=28 Identities=32% Similarity=0.469 Sum_probs=20.5
Q ss_pred CcEEEE--cccee-eCC--ccceeccCc---ccChH
Q psy5309 1033 PRGIRA--NGHLL-LNS--AKMSKSEGN---FLTLT 1060 (1618)
Q Consensus 1033 pk~v~~--hG~vl-~~G--~KMSKS~GN---vV~p~ 1060 (1618)
|..++. +..+. .+| +|||||.+| .|...
T Consensus 182 P~~l~~~~~~~l~gL~g~~~KMSKS~~n~~~~I~L~ 217 (348)
T 2yy5_A 182 PQFVQNKDTNRIMDLFDPTKKMSKSSKNQNGVIYLD 217 (348)
T ss_dssp CEEECCTTTTTCBCSSCTTSBCCSSCSCGGGCCBTT
T ss_pred CeeecccccccccCCCCcchhcCCCCCCCCceEeec
Confidence 556664 45666 778 899999999 77543
No 118
>3hzr_A Tryptophanyl-tRNA synthetase; APO tRNA-ligase, structural genomics, medical structural GEN pathogenic protozoa, MSGPP, ligase; 3.00A {Entamoeba histolytica}
Probab=59.27 E-value=4.1 Score=48.73 Aligned_cols=25 Identities=16% Similarity=0.170 Sum_probs=19.2
Q ss_pred ceeccccccc-ccc-ccccc-cCCcCCH
Q psy5309 1238 GIRANGHLLL-NSA-KMSKS-EGNFLTL 1262 (1618)
Q Consensus 1238 ~v~~hGfvld-~G~-KMSKS-lGNvI~P 1262 (1618)
.++++.++.. +|. ||||| .||.|..
T Consensus 254 ~~l~~~~l~gLdG~~KMSKSd~~~~I~L 281 (386)
T 3hzr_A 254 TVLFHKMVPLLSGVTKFDIPSDHNSILL 281 (386)
T ss_dssp EEEEECCCCCTTCTTCCCCCCTTTSCBT
T ss_pred eEeecCeeeCCCCCCccCcCCCCCeeec
Confidence 4556777776 885 99999 8999943
No 119
>2zp1_A Tyrosyl-tRNA synthetase; tRNA synthetases class I, ligase, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, nucleotide-binding; HET: IYR; 1.70A {Methanocaldococcus jannaschii} PDB: 1zh6_A* 1j1u_A* 1u7d_A 2q1g_A* 2pxh_A* 1zh0_A* 2q1i_A* 2ag6_A* 3qe4_A* 3d6u_A* 3d6v_A* 1u7x_A 3n2y_A* 2hgz_A*
Probab=57.10 E-value=3.2 Score=48.41 Aligned_cols=25 Identities=40% Similarity=0.554 Sum_probs=19.3
Q ss_pred EEEcccee-eCC-ccceeccCcccChH
Q psy5309 1036 IRANGHLL-LNS-AKMSKSEGNFLTLT 1060 (1618)
Q Consensus 1036 v~~hG~vl-~~G-~KMSKS~GNvV~p~ 1060 (1618)
++.+..+. .+| +|||||.||.|+..
T Consensus 190 ~~~~~~l~~l~G~~KMSKS~~~~I~L~ 216 (314)
T 2zp1_A 190 CIHNPVLTGLDGEGKMSSSKGNFIAVD 216 (314)
T ss_dssp EEEECCCBCTTSSSBCCTTTTCSCBTT
T ss_pred EeeccccccCCcccccCCCCcceecCC
Confidence 45566666 789 89999999988644
No 120
>1nzj_A Hypothetical protein YADB; Zn cluster, glutamyl T-RNA synthetase, structural genomics, unknown function; 1.50A {Escherichia coli} SCOP: c.26.1.1 PDB: 2zlz_A* 4a91_A*
Probab=56.88 E-value=4.3 Score=46.86 Aligned_cols=22 Identities=23% Similarity=0.013 Sum_probs=6.5
Q ss_pred EEEEcccee-eCCccceeccCcc
Q psy5309 1035 GIRANGHLL-LNSAKMSKSEGNF 1056 (1618)
Q Consensus 1035 ~v~~hG~vl-~~G~KMSKS~GNv 1056 (1618)
.+.++++++ .+|+|||||+||+
T Consensus 214 ~~~H~pll~~~~g~KLSKR~g~~ 236 (298)
T 1nzj_A 214 DYIHLPLALNPQGAKLSKQNHAP 236 (298)
T ss_dssp EEEEECBCCC-------------
T ss_pred eEEEeeeeECCCCCcccccCCcc
Confidence 447888886 8999999999997
No 121
>2dlc_X Tyrosyl-tRNA synthetase, cytoplasmic; tyrrs, ligase-tRNA complex; HET: 2MG OMG M2G PSU 6IA 5MC 5MU 1MA YMP; 2.40A {Saccharomyces cerevisiae}
Probab=56.30 E-value=2.4 Score=50.97 Aligned_cols=23 Identities=30% Similarity=0.206 Sum_probs=8.5
Q ss_pred eccccccc-c-ccccccccCCc-CCH
Q psy5309 1240 RANGHLLL-N-SAKMSKSEGNF-LTL 1262 (1618)
Q Consensus 1240 ~~hGfvld-~-G~KMSKSlGNv-I~P 1262 (1618)
+++.++.. + |+|||||.||. |+.
T Consensus 214 l~~pll~gl~~G~KMSKS~~ns~I~L 239 (394)
T 2dlc_X 214 LMNPMVPGLAQGGKMSASDPNSKIDL 239 (394)
T ss_dssp EEECCCCCCC----------CCSCBT
T ss_pred EecccccCCCCCCcCCCCCCCCEEec
Confidence 34556666 7 99999999996 754
No 122
>2cya_A Tyrosyl-tRNA synthetase; tyrrs, aminoacylation, structural genomics, NPPSFA, national on protein structural and functional analyses; 2.20A {Aeropyrum pernix}
Probab=56.09 E-value=5.1 Score=47.64 Aligned_cols=15 Identities=20% Similarity=0.308 Sum_probs=12.4
Q ss_pred cccceEeeccccccc
Q psy5309 941 YPVDLRCSGKDLIQN 955 (1618)
Q Consensus 941 ~p~Dl~v~G~D~~~~ 955 (1618)
+.+|+.++|.||..+
T Consensus 176 ~~~~~v~~G~DQ~~~ 190 (364)
T 2cya_A 176 MDLDIALGGMDQRKA 190 (364)
T ss_dssp TTCSEEEEEGGGHHH
T ss_pred cCCCEEeccchHHHH
Confidence 678899999998655
No 123
>1i6k_A TRPRS, tryptophanyl-tRNA synthetase; class I tRNA synthetase, AARS, induced FIT, ligase; HET: TYM; 1.72A {Geobacillus stearothermophilus} SCOP: c.26.1.1 PDB: 1i6l_A* 1i6m_A* 1m83_A* 1mau_A* 1maw_A* 1mb2_A* 2ov4_A* 3fhj_A* 3fi0_A* 1d2r_A 3u1v_A
Probab=55.91 E-value=3.4 Score=48.44 Aligned_cols=34 Identities=32% Similarity=0.351 Sum_probs=22.8
Q ss_pred cCcEEEE--cccee-eCC--ccceeccCc-c--cC----hHHHHhh
Q psy5309 1032 WPRGIRA--NGHLL-LNS--AKMSKSEGN-F--LT----LTEAVKK 1065 (1618)
Q Consensus 1032 ~pk~v~~--hG~vl-~~G--~KMSKS~GN-v--V~----p~eii~~ 1065 (1618)
.|..++. +..+. .+| +|||||.|| . |+ |+++-++
T Consensus 171 ~P~~li~~~~~~l~gl~G~~~KMSKS~~n~~~~I~L~d~~~~i~~K 216 (328)
T 1i6k_A 171 IPEARIPKVGARIMSLVDPTKKMSKSDPNPKAYITLLDDAKTIEKK 216 (328)
T ss_dssp CCEEECCSSSSSCBCSSCTTSBCCTTCSCGGGCCBTTCCHHHHHHH
T ss_pred CCeeeeccccccccCCCCCccCCCCCCCCcCceeeecCCHHHHHHH
Confidence 3666664 44555 778 899999999 5 64 4555443
No 124
>3jxe_A Tryptophanyl-tRNA synthetase; adenosine triphosphate, rossmann fold, crystallography, X-RAY, P. horikoshii, aminoacyl-tRNA synthetase; HET: TYM; 3.00A {Pyrococcus horikoshii}
Probab=53.43 E-value=5.3 Score=47.84 Aligned_cols=22 Identities=23% Similarity=0.122 Sum_probs=16.4
Q ss_pred eccccccc-cc--cccccccCC-cCC
Q psy5309 1240 RANGHLLL-NS--AKMSKSEGN-FLT 1261 (1618)
Q Consensus 1240 ~~hGfvld-~G--~KMSKSlGN-vI~ 1261 (1618)
+++.++.. +| +|||||.+| .|.
T Consensus 239 l~~~~l~gLdG~~~KMSKS~~ns~I~ 264 (392)
T 3jxe_A 239 LHSKFVPSLTSLSGKMSASKPETAIY 264 (392)
T ss_dssp EEECCCCCSSCSSSCCCTTSGGGCCB
T ss_pred eecccccCCCCCccccccCCCCCeee
Confidence 34566666 77 699999998 773
No 125
>1r6u_A Tryptophanyl-tRNA synthetase; class IC tRNA synthetase, rossmann fold catalytic domain, AN recognition domain, bound Trp-AMP, ligase; HET: TYM; 2.00A {Homo sapiens} SCOP: c.26.1.1 PDB: 1ulh_A 2dr2_A* 2ake_A* 1o5t_A
Probab=53.05 E-value=3 Score=50.67 Aligned_cols=23 Identities=26% Similarity=0.221 Sum_probs=18.4
Q ss_pred eccccccc-cc--cccccccCC-cCCH
Q psy5309 1240 RANGHLLL-NS--AKMSKSEGN-FLTL 1262 (1618)
Q Consensus 1240 ~~hGfvld-~G--~KMSKSlGN-vI~P 1262 (1618)
+++-++.. +| +|||||.|| .|+.
T Consensus 288 l~~pll~gLdG~~~KMSKS~~nsaI~L 314 (437)
T 1r6u_A 288 LHSTFFPALQGAQTKMSASDPNSSIFL 314 (437)
T ss_dssp EEECCCEETTEEEEECCTTSSSSCCBT
T ss_pred eecccccCCCCCccccCCCCCCCeeec
Confidence 56677776 88 899999999 6764
No 126
>3hv0_A Tryptophanyl-tRNA synthetase; tRNA-ligase, ATP-binding, aminoacyl-tRNA synthetase, ligase, nucleotide-binding; HET: TRP; 2.42A {Cryptosporidium parvum iowa II} SCOP: c.26.1.0
Probab=52.72 E-value=3 Score=50.05 Aligned_cols=25 Identities=24% Similarity=0.069 Sum_probs=9.3
Q ss_pred ceeccccccc-cc--cccccccCC-cCCH
Q psy5309 1238 GIRANGHLLL-NS--AKMSKSEGN-FLTL 1262 (1618)
Q Consensus 1238 ~v~~hGfvld-~G--~KMSKSlGN-vI~P 1262 (1618)
.++++-++.. +| .|||||.+| .|+.
T Consensus 250 ~~l~~~~l~gLdG~~~KMSKS~~nsaI~L 278 (393)
T 3hv0_A 250 SSIHSIFLPSLQGSQTKMSASVQNSSIFV 278 (393)
T ss_dssp EEEEECCCCC-------------CCCCBT
T ss_pred eeeccCcccCCCCCCcCCCCCCCCCeEec
Confidence 3456777777 88 799999998 6643
No 127
>2ip1_A Tryptophanyl-tRNA synthetase; rossmann fold, structural genomics, PSI-2, protein structure initiative; HET: PG4; 1.80A {Saccharomyces cerevisiae} PDB: 3kt0_A* 3kt3_A* 3kt6_A* 3kt8_A*
Probab=50.86 E-value=3.1 Score=50.58 Aligned_cols=24 Identities=21% Similarity=0.216 Sum_probs=12.6
Q ss_pred eccccccc-cc--cccccccCC-cCCHH
Q psy5309 1240 RANGHLLL-NS--AKMSKSEGN-FLTLT 1263 (1618)
Q Consensus 1240 ~~hGfvld-~G--~KMSKSlGN-vI~P~ 1263 (1618)
+++.++.. +| +|||||.|| .|+..
T Consensus 281 l~~~ll~gLdG~~~KMSKS~~nsaI~L~ 308 (432)
T 2ip1_A 281 LHSRFFPALQGSTTKMSASDDTTAIFMT 308 (432)
T ss_dssp EEECCCCCTTC--------CGGGCCBTT
T ss_pred eccccccCCCCCccccCCCCCCCeEecc
Confidence 55666666 88 999999999 77543
No 128
>3prh_A Tryptophanyl-tRNA synthetase; TRPRS, protein biosynthesis, translation, class I tRNA synth rossman fold, high motif, KMSKS motif; 2.80A {Bacillus subtilis}
Probab=49.94 E-value=6.8 Score=46.76 Aligned_cols=15 Identities=40% Similarity=0.510 Sum_probs=12.2
Q ss_pred cccceEeeccccccc
Q psy5309 941 YPVDLRCSGKDLIQN 955 (1618)
Q Consensus 941 ~p~Dl~v~G~D~~~~ 955 (1618)
+.+|+...|.||...
T Consensus 170 ~~ad~vPvG~DQ~~h 184 (388)
T 3prh_A 170 YGTDLVPPGEDQKQH 184 (388)
T ss_dssp TTCCEECCCSSCHHH
T ss_pred hCCCEEEechhHHHH
Confidence 578899999998654
No 129
>3p0j_A Tyrosyl-tRNA synthetase; aminoacyl-tRNA synthetase, tRNA ligase, AARS, tyrrs, pseudod translation, ATP-binding, nucleotide-binding, ligase; HET: TYE; 2.89A {Leishmania major} PDB: 3p0i_A* 3p0h_A*
Probab=49.05 E-value=9.8 Score=48.94 Aligned_cols=23 Identities=39% Similarity=0.394 Sum_probs=17.1
Q ss_pred EEEcccee-e-CC-ccceeccC-cccC
Q psy5309 1036 IRANGHLL-L-NS-AKMSKSEG-NFLT 1058 (1618)
Q Consensus 1036 v~~hG~vl-~-~G-~KMSKS~G-NvV~ 1058 (1618)
++.+.++. . +| +|||||.+ |.|.
T Consensus 215 ~l~~~~l~gL~dG~~KMSKS~~~~~I~ 241 (690)
T 3p0j_A 215 ILSHHMLAGLKQGQAKMSKSDPDSAIF 241 (690)
T ss_dssp EEEBCCCCCSSTTCSSCBTTBGGGSCB
T ss_pred EeecCeeecCCCCCcCCCCCCCCCeee
Confidence 45667776 6 78 59999998 6665
No 130
>2ip1_A Tryptophanyl-tRNA synthetase; rossmann fold, structural genomics, PSI-2, protein structure initiative; HET: PG4; 1.80A {Saccharomyces cerevisiae} PDB: 3kt0_A* 3kt3_A* 3kt6_A* 3kt8_A*
Probab=47.39 E-value=5.2 Score=48.59 Aligned_cols=26 Identities=23% Similarity=0.336 Sum_probs=14.4
Q ss_pred EEEcccee-eCC--ccceeccCc-ccChHH
Q psy5309 1036 IRANGHLL-LNS--AKMSKSEGN-FLTLTE 1061 (1618)
Q Consensus 1036 v~~hG~vl-~~G--~KMSKS~GN-vV~p~e 1061 (1618)
++.+.++. .+| +|||||.+| .|+..+
T Consensus 280 ~l~~~ll~gLdG~~~KMSKS~~nsaI~L~d 309 (432)
T 2ip1_A 280 LLHSRFFPALQGSTTKMSASDDTTAIFMTD 309 (432)
T ss_dssp EEEECCCCCTTC--------CGGGCCBTTC
T ss_pred eeccccccCCCCCccccCCCCCCCeEeccC
Confidence 45667777 889 999999999 776544
No 131
>1r6u_A Tryptophanyl-tRNA synthetase; class IC tRNA synthetase, rossmann fold catalytic domain, AN recognition domain, bound Trp-AMP, ligase; HET: TYM; 2.00A {Homo sapiens} SCOP: c.26.1.1 PDB: 1ulh_A 2dr2_A* 2ake_A* 1o5t_A
Probab=47.12 E-value=4.8 Score=48.90 Aligned_cols=25 Identities=32% Similarity=0.343 Sum_probs=19.6
Q ss_pred EEEcccee-eCC--ccceeccCc-ccChH
Q psy5309 1036 IRANGHLL-LNS--AKMSKSEGN-FLTLT 1060 (1618)
Q Consensus 1036 v~~hG~vl-~~G--~KMSKS~GN-vV~p~ 1060 (1618)
++.+.++. .+| +|||||.+| .|+..
T Consensus 287 ~l~~pll~gLdG~~~KMSKS~~nsaI~L~ 315 (437)
T 1r6u_A 287 LLHSTFFPALQGAQTKMSASDPNSSIFLT 315 (437)
T ss_dssp EEEECCCEETTEEEEECCTTSSSSCCBTT
T ss_pred EeecccccCCCCCccccCCCCCCCeeecc
Confidence 35677777 888 899999999 77643
No 132
>3tze_A Tryptophanyl-tRNA synthetase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, amino acylation; HET: TRP; 2.60A {Encephalitozoon cuniculi}
Probab=46.98 E-value=7.7 Score=46.64 Aligned_cols=24 Identities=25% Similarity=0.083 Sum_probs=17.8
Q ss_pred eeccccccc-cc--ccccccc-CCcCCH
Q psy5309 1239 IRANGHLLL-NS--AKMSKSE-GNFLTL 1262 (1618)
Q Consensus 1239 v~~hGfvld-~G--~KMSKSl-GNvI~P 1262 (1618)
++++-++.. +| .|||||. ||.|+.
T Consensus 274 ~l~~~~l~gLdG~~~KMSKS~~~~~I~L 301 (406)
T 3tze_A 274 SIYVSLLPDLKGVNRKMSASDPNSSIYL 301 (406)
T ss_dssp EEEECCCCCTTSCCCCSSCSCGGGSCBT
T ss_pred eeccCcccCCCCCCcCCCCCCCCCcccC
Confidence 335667766 88 6999999 688854
No 133
>1r6t_A Tryptophanyl-tRNA synthetase; class IC tRNA synthetase, rossmann fold catalytical domain, recognition domain, bound Trp-AMP, ligase; HET: TYM; 2.10A {Homo sapiens} SCOP: a.16.1.3 c.26.1.1 PDB: 2azx_A* 2quh_A* 2qui_A* 2quj_A* 2quk_A
Probab=46.88 E-value=4.2 Score=50.03 Aligned_cols=24 Identities=25% Similarity=0.250 Sum_probs=18.5
Q ss_pred eeccccccc-cc--cccccccCC-cCCH
Q psy5309 1239 IRANGHLLL-NS--AKMSKSEGN-FLTL 1262 (1618)
Q Consensus 1239 v~~hGfvld-~G--~KMSKSlGN-vI~P 1262 (1618)
++++-++.. +| .|||||.|| .|+.
T Consensus 334 ~l~~pll~gLdG~~~KMSKS~~nsaI~L 361 (477)
T 1r6t_A 334 LLHSTFFPALQGAQTKMSASDPNSSIFL 361 (477)
T ss_dssp EEEECCCEETTEEEEECCTTSTTCCCBT
T ss_pred eeecccccCCCCCccccCCCCCCCceee
Confidence 355667776 88 899999999 6764
No 134
>3i05_A Tryptophanyl-tRNA synthetase; APO tRNA-ligase, ATP-binding, aminoacyl-tRNA synthetase, LIG nucleotide-binding, protein biosynthesis; 2.80A {Trypanosoma brucei} SCOP: c.26.1.0
Probab=46.44 E-value=5.5 Score=47.76 Aligned_cols=31 Identities=23% Similarity=0.222 Sum_probs=11.9
Q ss_pred EEEEcccee-eCC--ccceeccCcccC----hHHHHhh
Q psy5309 1035 GIRANGHLL-LNS--AKMSKSEGNFLT----LTEAVKK 1065 (1618)
Q Consensus 1035 ~v~~hG~vl-~~G--~KMSKS~GNvV~----p~eii~~ 1065 (1618)
.++.+.++. .+| +|||||.||.|+ |.++-++
T Consensus 254 ~~l~~~~l~gLdG~~~KMSKS~~~~I~L~D~p~~i~kK 291 (395)
T 3i05_A 254 AVIHSKFFPGLSGPKGKMSSSSGTAVLLTDTEKMVKDK 291 (395)
T ss_dssp EEEEECCCCCC-------------CCBTTCCHHHHHHH
T ss_pred eeeccccccCCCCCcccCCCCCCCcccCCCCHHHHHHH
Confidence 345666777 788 799999999995 4444443
No 135
>3hv0_A Tryptophanyl-tRNA synthetase; tRNA-ligase, ATP-binding, aminoacyl-tRNA synthetase, ligase, nucleotide-binding; HET: TRP; 2.42A {Cryptosporidium parvum iowa II} SCOP: c.26.1.0
Probab=45.98 E-value=5.5 Score=47.76 Aligned_cols=25 Identities=28% Similarity=0.150 Sum_probs=8.7
Q ss_pred EEEEcccee-eCC--ccceeccCc-ccCh
Q psy5309 1035 GIRANGHLL-LNS--AKMSKSEGN-FLTL 1059 (1618)
Q Consensus 1035 ~v~~hG~vl-~~G--~KMSKS~GN-vV~p 1059 (1618)
.++.+.++. .+| +|||||.+| .|+.
T Consensus 250 ~~l~~~~l~gLdG~~~KMSKS~~nsaI~L 278 (393)
T 3hv0_A 250 SSIHSIFLPSLQGSQTKMSASVQNSSIFV 278 (393)
T ss_dssp EEEEECCCCC-------------CCCCBT
T ss_pred eeeccCcccCCCCCCcCCCCCCCCCeEec
Confidence 345677777 788 799999998 6653
No 136
>3jxe_A Tryptophanyl-tRNA synthetase; adenosine triphosphate, rossmann fold, crystallography, X-RAY, P. horikoshii, aminoacyl-tRNA synthetase; HET: TYM; 3.00A {Pyrococcus horikoshii}
Probab=45.92 E-value=6.1 Score=47.28 Aligned_cols=23 Identities=26% Similarity=0.193 Sum_probs=17.5
Q ss_pred EEEcccee-eCC--ccceeccCc-ccC
Q psy5309 1036 IRANGHLL-LNS--AKMSKSEGN-FLT 1058 (1618)
Q Consensus 1036 v~~hG~vl-~~G--~KMSKS~GN-vV~ 1058 (1618)
.+.+.++. .+| +|||||.+| .|.
T Consensus 238 ~l~~~~l~gLdG~~~KMSKS~~ns~I~ 264 (392)
T 3jxe_A 238 ALHSKFVPSLTSLSGKMSASKPETAIY 264 (392)
T ss_dssp EEEECCCCCSSCSSSCCCTTSGGGCCB
T ss_pred eeecccccCCCCCccccccCCCCCeee
Confidence 34466777 788 599999998 774
No 137
>3hzr_A Tryptophanyl-tRNA synthetase; APO tRNA-ligase, structural genomics, medical structural GEN pathogenic protozoa, MSGPP, ligase; 3.00A {Entamoeba histolytica}
Probab=45.61 E-value=7.3 Score=46.54 Aligned_cols=25 Identities=16% Similarity=0.170 Sum_probs=19.4
Q ss_pred EEEEcccee-eCCc-cceec-cCcccCh
Q psy5309 1035 GIRANGHLL-LNSA-KMSKS-EGNFLTL 1059 (1618)
Q Consensus 1035 ~v~~hG~vl-~~G~-KMSKS-~GNvV~p 1059 (1618)
.++.+.++. .+|. ||||| .||.|..
T Consensus 254 ~~l~~~~l~gLdG~~KMSKSd~~~~I~L 281 (386)
T 3hzr_A 254 TVLFHKMVPLLSGVTKFDIPSDHNSILL 281 (386)
T ss_dssp EEEEECCCCCTTCTTCCCCCCTTTSCBT
T ss_pred eEeecCeeeCCCCCCccCcCCCCCeeec
Confidence 556677777 7884 99999 7999854
No 138
>3sz3_A Tryptophanyl-tRNA synthetase; structural genomics, center for structural genomics of infec diseases, csgid, rossmann fold; HET: TRP; 1.50A {Vibrio cholerae o1 biovar el tor}
Probab=44.76 E-value=8.2 Score=45.36 Aligned_cols=15 Identities=53% Similarity=0.729 Sum_probs=12.1
Q ss_pred cc-ccccccc---CCcCCH
Q psy5309 1248 NS-AKMSKSE---GNFLTL 1262 (1618)
Q Consensus 1248 ~G-~KMSKSl---GNvI~P 1262 (1618)
+| +|||||. ||.|..
T Consensus 197 dg~~KMSKS~~~~~~~I~L 215 (341)
T 3sz3_A 197 DATKKMSKSDDNRKNVITL 215 (341)
T ss_dssp EEEEECCTTCSCGGGCCBT
T ss_pred CCCCccCCCCCCCCCeeec
Confidence 57 7999999 788843
No 139
>1r6t_A Tryptophanyl-tRNA synthetase; class IC tRNA synthetase, rossmann fold catalytical domain, recognition domain, bound Trp-AMP, ligase; HET: TYM; 2.10A {Homo sapiens} SCOP: a.16.1.3 c.26.1.1 PDB: 2azx_A* 2quh_A* 2qui_A* 2quj_A* 2quk_A
Probab=41.25 E-value=7 Score=48.10 Aligned_cols=25 Identities=32% Similarity=0.343 Sum_probs=19.5
Q ss_pred EEEcccee-eCC--ccceeccCc-ccChH
Q psy5309 1036 IRANGHLL-LNS--AKMSKSEGN-FLTLT 1060 (1618)
Q Consensus 1036 v~~hG~vl-~~G--~KMSKS~GN-vV~p~ 1060 (1618)
++.+-++. .+| +|||||.|| .|+..
T Consensus 334 ~l~~pll~gLdG~~~KMSKS~~nsaI~L~ 362 (477)
T 1r6t_A 334 LLHSTFFPALQGAQTKMSASDPNSSIFLT 362 (477)
T ss_dssp EEEECCCEETTEEEEECCTTSTTCCCBTT
T ss_pred eeecccccCCCCCccccCCCCCCCceeec
Confidence 35667777 888 899999999 67643
No 140
>2cya_A Tyrosyl-tRNA synthetase; tyrrs, aminoacylation, structural genomics, NPPSFA, national on protein structural and functional analyses; 2.20A {Aeropyrum pernix}
Probab=41.02 E-value=5.9 Score=47.10 Aligned_cols=15 Identities=33% Similarity=0.306 Sum_probs=11.5
Q ss_pred ccccccc-cCCcCCHH
Q psy5309 1249 SAKMSKS-EGNFLTLT 1263 (1618)
Q Consensus 1249 G~KMSKS-lGNvI~P~ 1263 (1618)
|+||||| .||.|+..
T Consensus 236 g~KMSKS~~~~~I~L~ 251 (364)
T 2cya_A 236 EVKMSKSKPETAVFVV 251 (364)
T ss_dssp -CBCCSSSGGGSCBTT
T ss_pred ccccCCCCCCCEeecc
Confidence 8999999 78888643
No 141
>3foc_A Tryptophanyl-tRNA synthetase; structural genomics, giardiasi aminoacyl-tRNA synthetase, ligase; 2.09A {Giardia lamblia atcc 50803}
Probab=39.66 E-value=6.8 Score=47.61 Aligned_cols=23 Identities=26% Similarity=0.141 Sum_probs=15.7
Q ss_pred eeccccccc-ccc--ccccccCC-cCC
Q psy5309 1239 IRANGHLLL-NSA--KMSKSEGN-FLT 1261 (1618)
Q Consensus 1239 v~~hGfvld-~G~--KMSKSlGN-vI~ 1261 (1618)
++.+.++.. +|. |||||.+| .|.
T Consensus 318 ~~~~~~l~gLdG~~~KMSKS~~ns~I~ 344 (451)
T 3foc_A 318 YLLGKFLPGLQGSGTKMSASDPNSAIY 344 (451)
T ss_dssp EEEECCCCBTTBTTCCCCTTCGGGSCB
T ss_pred eecCCcccCCCCCCCccCCCCCCCeee
Confidence 344555555 665 99999998 453
No 142
>3sz3_A Tryptophanyl-tRNA synthetase; structural genomics, center for structural genomics of infec diseases, csgid, rossmann fold; HET: TRP; 1.50A {Vibrio cholerae o1 biovar el tor}
Probab=38.06 E-value=5.4 Score=46.90 Aligned_cols=28 Identities=39% Similarity=0.573 Sum_probs=18.7
Q ss_pred cCcEEEE--cccee-e-CC-ccceecc---CcccCh
Q psy5309 1032 WPRGIRA--NGHLL-L-NS-AKMSKSE---GNFLTL 1059 (1618)
Q Consensus 1032 ~pk~v~~--hG~vl-~-~G-~KMSKS~---GNvV~p 1059 (1618)
.|..++. +..+. . +| +|||||. +|.|..
T Consensus 180 ~p~~li~~~~~~l~gL~dg~~KMSKS~~~~~~~I~L 215 (341)
T 3sz3_A 180 IPEPYIPTVNARVMSLQDATKKMSKSDDNRKNVITL 215 (341)
T ss_dssp CCEECCCSCCCCCEETTEEEEECCTTCSCGGGCCBT
T ss_pred cChhhhccCcccccCCCCCCCccCCCCCCCCCeeec
Confidence 3555554 44555 4 57 7999999 788853
No 143
>2j5b_A Tyrosyl-tRNA synthetase; ligase, protein biosynthesis, ATP-binding; HET: TYE; 2.20A {Acanthamoeba polyphaga mimivirus}
Probab=35.39 E-value=8.3 Score=45.53 Aligned_cols=24 Identities=25% Similarity=0.265 Sum_probs=16.1
Q ss_pred eeccccccc--cc-ccccccc-CCcCCH
Q psy5309 1239 IRANGHLLL--NS-AKMSKSE-GNFLTL 1262 (1618)
Q Consensus 1239 v~~hGfvld--~G-~KMSKSl-GNvI~P 1262 (1618)
+.++.++.. +| +|||||. ||.|+.
T Consensus 217 ~~~~~~l~gL~dg~~KMSKS~~~~~I~L 244 (348)
T 2j5b_A 217 SLSHHMLMSLSGPKKKMSKSDPQGAIFM 244 (348)
T ss_dssp EEEBCCCCCTTCSSCCCSTTCGGGSCBT
T ss_pred eecCccccCCCCcccccccCCCCCeEee
Confidence 344555554 46 7999999 578853
No 144
>2cyc_A Tyrosyl-tRNA synthetase; tyrosine, tyrrs, aminoacylation, structural genomics; HET: TYR; 2.20A {Pyrococcus horikoshii}
Probab=35.32 E-value=8.5 Score=45.89 Aligned_cols=14 Identities=36% Similarity=0.294 Sum_probs=11.4
Q ss_pred ccccccc-CCcCCHH
Q psy5309 1250 AKMSKSE-GNFLTLT 1263 (1618)
Q Consensus 1250 ~KMSKSl-GNvI~P~ 1263 (1618)
+|||||. +|.|+..
T Consensus 250 ~KMSKS~~~~~I~L~ 264 (375)
T 2cyc_A 250 MKMSKSKPYSAVFIH 264 (375)
T ss_dssp HBGGGSCGGGSCBTT
T ss_pred hcccCCCCCCeeccC
Confidence 8999999 7777653
No 145
>2j5b_A Tyrosyl-tRNA synthetase; ligase, protein biosynthesis, ATP-binding; HET: TYE; 2.20A {Acanthamoeba polyphaga mimivirus}
Probab=35.04 E-value=11 Score=44.63 Aligned_cols=25 Identities=28% Similarity=0.276 Sum_probs=17.6
Q ss_pred EEEEcccee-e-CC-ccceecc-CcccCh
Q psy5309 1035 GIRANGHLL-L-NS-AKMSKSE-GNFLTL 1059 (1618)
Q Consensus 1035 ~v~~hG~vl-~-~G-~KMSKS~-GNvV~p 1059 (1618)
.++.+.++. . +| +|||||. ||.|+.
T Consensus 216 ~~~~~~~l~gL~dg~~KMSKS~~~~~I~L 244 (348)
T 2j5b_A 216 ISLSHHMLMSLSGPKKKMSKSDPQGAIFM 244 (348)
T ss_dssp EEEEBCCCCCTTCSSCCCSTTCGGGSCBT
T ss_pred eeecCccccCCCCcccccccCCCCCeEee
Confidence 345566666 6 66 7999999 577753
No 146
>3foc_A Tryptophanyl-tRNA synthetase; structural genomics, giardiasi aminoacyl-tRNA synthetase, ligase; 2.09A {Giardia lamblia atcc 50803}
Probab=32.01 E-value=12 Score=45.56 Aligned_cols=23 Identities=30% Similarity=0.262 Sum_probs=16.6
Q ss_pred EEEcccee-eCCc--cceeccCc-ccC
Q psy5309 1036 IRANGHLL-LNSA--KMSKSEGN-FLT 1058 (1618)
Q Consensus 1036 v~~hG~vl-~~G~--KMSKS~GN-vV~ 1058 (1618)
++.+.++. .+|. |||||.+| .|.
T Consensus 318 ~~~~~~l~gLdG~~~KMSKS~~ns~I~ 344 (451)
T 3foc_A 318 YLLGKFLPGLQGSGTKMSASDPNSAIY 344 (451)
T ss_dssp EEEECCCCBTTBTTCCCCTTCGGGSCB
T ss_pred eecCCcccCCCCCCCccCCCCCCCeee
Confidence 45566666 7775 99999998 444
No 147
>4g6z_A Glutamate-tRNA ligase; aminoacyl-tRNA synthetase, AARS, class 1B AARS, ATP-dependen charging, protein synthesis, structural genomics; HET: GLU; 2.05A {Burkholderia thailandensis}
Probab=31.96 E-value=26 Score=43.08 Aligned_cols=55 Identities=20% Similarity=0.177 Sum_probs=38.7
Q ss_pred eccccccc-cccccccccCCcCCHHHHHH-hcCcceeeeehhccCCCC-cCcccCHHHH
Q psy5309 1240 RANGHLLL-NSAKMSKSEGNFLTLTEAVK-KFSADGMRLCLADSGDSV-EDANFVESMA 1295 (1618)
Q Consensus 1240 ~~hGfvld-~G~KMSKSlGNvI~P~~ii~-~yGaD~lRl~l~~~~~~~-~D~~fs~~~l 1295 (1618)
..+..+++ +|+||||..|. ++..++.+ .|.+++++=||+..+-.. ..--||.+.+
T Consensus 252 ~HlpLi~~~~g~KLSKR~g~-~sl~~~r~~G~~peal~n~l~~lG~s~~~~e~~s~~el 309 (490)
T 4g6z_A 252 AHLPTVLNEQGEKMSKRHGA-MSVMGYRDAGYLPEAVLNYLARLGWSHGDAEIFTREQF 309 (490)
T ss_dssp EEECCEECTTSSBCCTTTTC-CBHHHHHHTTCCHHHHHHHHHTSSBCCTTCCCCCHHHH
T ss_pred EEecceeCCCCCcccCCCCC-cCHHHHHHCCCCHHHHHHHHHHhCCCCCCccccCHHHH
Confidence 33456677 89999999986 56777664 488999999998765332 2334677643
No 148
>3prh_A Tryptophanyl-tRNA synthetase; TRPRS, protein biosynthesis, translation, class I tRNA synth rossman fold, high motif, KMSKS motif; 2.80A {Bacillus subtilis}
Probab=31.86 E-value=9.7 Score=45.44 Aligned_cols=14 Identities=50% Similarity=0.674 Sum_probs=11.6
Q ss_pred cccccccc---CCcCCH
Q psy5309 1249 SAKMSKSE---GNFLTL 1262 (1618)
Q Consensus 1249 G~KMSKSl---GNvI~P 1262 (1618)
++|||||. ||.|..
T Consensus 224 ~~KMSKS~~~~~n~I~L 240 (388)
T 3prh_A 224 LKKMSKSDPNQKAYITL 240 (388)
T ss_dssp TSBCCTTCSSTTSCCBT
T ss_pred CCccCCCCCCCCCeeec
Confidence 37999999 899943
No 149
>3a04_A Tryptophanyl-tRNA synthetase; ligase, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, nucleotide-binding, protein biosynthesis; 1.97A {Aeropyrum pernix} PDB: 3a05_A*
Probab=31.64 E-value=22 Score=42.35 Aligned_cols=42 Identities=17% Similarity=0.438 Sum_probs=28.5
Q ss_pred CCCCeEEeCCCCCCCCcchhhhhchhhhhHHHHHHHHHcCCcccccc
Q psy5309 86 PDDKFFTTFPFPYMNGRLHLGHTFSLSKCEFSVRFNRLKGKRVLFPF 132 (1618)
Q Consensus 86 ~~~~f~v~~ppP~~nG~LHiGHa~~~~~~D~~aR~~rm~G~~V~~~~ 132 (1618)
.+++|.|..+. -|||.|||||.... + -.++..-.|++|.+..
T Consensus 67 ~gk~~~v~sG~-~PTG~lHLGhyv~~-~---~~~~lq~~~~~~~~~I 108 (372)
T 3a04_A 67 RGERVAVLTGF-MPSGKFHFGHKLTV-D---QLIYLQKNGFKVFVAI 108 (372)
T ss_dssp TTCCCEEEEEE-CCCSCCBHHHHHHH-H---HHHHHHHTTCEEEEEE
T ss_pred cCCCCEEEeCc-CCCcHhHHHHHHHH-H---HHHHHHhCCCeEEEEE
Confidence 36788888874 58999999997743 2 1333344689886543
No 150
>2cyc_A Tyrosyl-tRNA synthetase; tyrosine, tyrrs, aminoacylation, structural genomics; HET: TYR; 2.20A {Pyrococcus horikoshii}
Probab=31.59 E-value=13 Score=44.32 Aligned_cols=15 Identities=20% Similarity=0.206 Sum_probs=12.3
Q ss_pred cccceEeeccccccc
Q psy5309 941 YPVDLRCSGKDLIQN 955 (1618)
Q Consensus 941 ~p~Dl~v~G~D~~~~ 955 (1618)
+.+|+..+|.||..+
T Consensus 179 ~~~~~vp~G~DQ~~~ 193 (375)
T 2cyc_A 179 QGVTIAHAGMDQRKA 193 (375)
T ss_dssp TTCSEEEEEGGGHHH
T ss_pred hCCCeecccchHHHH
Confidence 578899999998655
No 151
>3n9i_A Tryptophanyl-tRNA synthetase; tryptophan-tRNA ligase, csgid, structural genomics, niaid, center for structural genomics infectious diseases; 1.95A {Yersinia pestis} SCOP: c.26.1.1
Probab=28.85 E-value=14 Score=43.46 Aligned_cols=15 Identities=27% Similarity=0.330 Sum_probs=11.8
Q ss_pred cccceEeeccccccc
Q psy5309 941 YPVDLRCSGKDLIQN 955 (1618)
Q Consensus 941 ~p~Dl~v~G~D~~~~ 955 (1618)
+.+|+...|.||...
T Consensus 151 ~~ad~vpvG~DQ~~h 165 (346)
T 3n9i_A 151 YQTNQVPVGEDQKQH 165 (346)
T ss_dssp TTCSEECCCGGGHHH
T ss_pred hCceEEEeccchHHH
Confidence 467888899998655
No 152
>3vgj_A Tyrosyl-tRNA synthetase, putative; tyrrs, ligase; HET: YAP; 2.21A {Plasmodium falciparum}
Probab=23.98 E-value=33 Score=40.74 Aligned_cols=31 Identities=16% Similarity=0.311 Sum_probs=19.5
Q ss_pred CCCcchhhhhchhhhhHH-HHHHHHHcCCccccccc
Q psy5309 99 MNGRLHLGHTFSLSKCEF-SVRFNRLKGKRVLFPFG 133 (1618)
Q Consensus 99 ~nG~LHiGHa~~~~~~D~-~aR~~rm~G~~V~~~~G 133 (1618)
|||.|||||+ ++.-+ +.++++ .|++|.+.-|
T Consensus 65 PTg~lHlG~g---vl~~~~~~~lQ~-~G~~~~~lIa 96 (373)
T 3vgj_A 65 PSGRMHIAQG---LLKSIIVNKLTS-NGCTFIFWIA 96 (373)
T ss_dssp CCSSCBHHHH---HHHHHHHHHHHT-TTCEEEEEEC
T ss_pred CCCCceehhh---HHHHHHHHHHHH-CCCcEEEEEe
Confidence 6899999992 33322 444544 4888766544
No 153
>3n9i_A Tryptophanyl-tRNA synthetase; tryptophan-tRNA ligase, csgid, structural genomics, niaid, center for structural genomics infectious diseases; 1.95A {Yersinia pestis} SCOP: c.26.1.1
Probab=22.89 E-value=17 Score=42.68 Aligned_cols=14 Identities=43% Similarity=0.636 Sum_probs=11.0
Q ss_pred cc-cccccccC---CcCC
Q psy5309 1248 NS-AKMSKSEG---NFLT 1261 (1618)
Q Consensus 1248 ~G-~KMSKSlG---NvI~ 1261 (1618)
+| +|||||.+ |.|.
T Consensus 203 dg~~KMSKS~~~~~~~I~ 220 (346)
T 3n9i_A 203 DPTKKMSKSDDNRNNVIE 220 (346)
T ss_dssp CTTSBCCTTCSCGGGCCB
T ss_pred CCccccCCCCCCCCceec
Confidence 56 59999997 5774
No 154
>3p0j_A Tyrosyl-tRNA synthetase; aminoacyl-tRNA synthetase, tRNA ligase, AARS, tyrrs, pseudod translation, ATP-binding, nucleotide-binding, ligase; HET: TYE; 2.89A {Leishmania major} PDB: 3p0i_A* 3p0h_A*
Probab=21.30 E-value=36 Score=43.70 Aligned_cols=46 Identities=13% Similarity=0.068 Sum_probs=27.3
Q ss_pred CCeEEeCCCCCCCCcchhhhhchhhhhHH-HHHHHHHcCCcccccccccCCCh
Q psy5309 88 DKFFTTFPFPYMNGRLHLGHTFSLSKCEF-SVRFNRLKGKRVLFPFGFHCTGM 139 (1618)
Q Consensus 88 ~~f~v~~ppP~~nG~LHiGHa~~~~~~D~-~aR~~rm~G~~V~~~~G~d~~G~ 139 (1618)
+++.|..+. -|||.||||| .++.-+ +.++++ .|++|.+.-| |-|++
T Consensus 39 ~~~~vy~G~-~PTg~lHLG~---~v~~~~~~~~lQ~-~G~~~~~lIa-D~ha~ 85 (690)
T 3p0j_A 39 PLIRCYDGF-EPSGRMHIAQ---GIFKAVNVNKCTA-AGCEFVFWVA-DWFAL 85 (690)
T ss_dssp TTEEEEEEE-CCCSCCBHHH---HHHHHHHHHHHHH-TTEEEEEEEC-CGGGG
T ss_pred CCceEEeee-cCCCcchhHh---hHHHHHHHHHHHH-CCCcEEEEEe-eeEEE
Confidence 445555543 4799999999 222222 445554 5888866555 44443
Done!