RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy5309
(1618 letters)
>gnl|CDD|215518 PLN02959, PLN02959, aminoacyl-tRNA ligase.
Length = 1084
Score = 648 bits (1674), Expect = 0.0
Identities = 271/560 (48%), Positives = 347/560 (61%), Gaps = 108/560 (19%)
Query: 653 VLPYDPVPIIQVPEYGNLCAVTVYEKLKIQSQNDKDKLQEAKELVYLKGFYDGIMLVGEF 712
VLP++ VPII +PE+G+ A V E LKI+SQNDK+KL EAK L YLKGF DG MLVGE+
Sbjct: 429 VLPFEVVPIINIPEFGDKSAEKVCEDLKIKSQNDKEKLAEAKRLTYLKGFTDGTMLVGEY 488
Query: 713 KGKKVQEVKKLLQKKIDIIGVALKAPVTSHSVIYTLPMLSIREDKGTGIVTSVPSDSPDD 772
G+KVQE K L++KK+ G A ++Y+ P E K V S S D+
Sbjct: 489 AGRKVQEAKPLIKKKLIEAGQA---------ILYSEP-----EKK-------VMSRSGDE 527
Query: 773 YAALVDLKKKPPFREKYHVTDEMCVVALCDQWYLDYGEPTWKAAAEQCLANMNTYHDEVR 832
CVVAL DQWYL YGE WK AE+CL+ MN Y DE R
Sbjct: 528 -----------------------CVVALTDQWYLTYGEEEWKKKAEKCLSKMNLYSDETR 564
Query: 833 RNFGASLNWLHEYACSRTYGLGTKLPWDEQWLIESLSDSTIYMAYYTVAHLLQGGTFRGE 892
F +L WL+++ACSR++GLGT++PWDEQ+LIESLSDSTIYMAYYTVAHLLQGG G+
Sbjct: 565 HGFEHTLGWLNQWACSRSFGLGTRIPWDEQFLIESLSDSTIYMAYYTVAHLLQGGDMYGK 624
Query: 893 NGNALNIKAEDLTPEVWDYVFFKAAPFPPKCRVPKAKLDIMRREFQYWYPVDLRCSGKDL 952
+ ++ IK E +T EVWD+VF P P +P L+ M++EF+YWYP DLR
Sbjct: 625 DKSS--IKPEQMTDEVWDFVFCGG-PLPKSSDIPAELLEKMKQEFEYWYPFDLRV----- 676
Query: 953 IQNHLTFFIYIHTAIWGDEPEMWPRGIRANGHLLLNSAKDLIQNHLTFFIYKLFSDLIQN 1012
S KDLIQNHLTF IY
Sbjct: 677 ------------------------------------SGKDLIQNHLTFAIYN-------- 692
Query: 1013 HLTFFIYIHTAIWGDEPEMWPRGIRANGHLLLNSAKMSKSEGNFLTLTEAVKKFSADGMR 1072
HTAIW +E WPRG R NGHL+LNS KMSKS GNFLTL +A+++FSAD R
Sbjct: 693 --------HTAIWAEEH--WPRGFRCNGHLMLNSEKMSKSTGNFLTLRQAIEEFSADATR 742
Query: 1073 LCLADSGDSVEDANFVESMADAGILRLYTFIEWVKEILATQSTLRTGSQDSFNDKVFLSE 1132
LAD+GD V+DANFV A+A ILRL I W++E+LA +S+LRTG ++ D+VF +E
Sbjct: 743 FALADAGDGVDDANFVFETANAAILRLTKEIAWMEEVLAAESSLRTGPPSTYADRVFENE 802
Query: 1133 MNLKIKETEDHYTKMLFKEALRTGFFELQAARDKYRELTAAEGGMHRTLVLRFVEVQALL 1192
+N+ I ETE +Y M+F+EAL++GF++LQAARD+YR L+ GGM+R LV RF++VQ L
Sbjct: 803 INIAIAETEKNYEAMMFREALKSGFYDLQAARDEYR-LSCGSGGMNRDLVWRFMDVQTRL 861
Query: 1193 LCPVCPHVAEHVY-QLLGKD 1211
+ P+CPH AEHV+ ++L K+
Sbjct: 862 ITPICPHYAEHVWREILKKE 881
Score = 526 bits (1356), Expect = e-164
Identities = 201/438 (45%), Positives = 252/438 (57%), Gaps = 89/438 (20%)
Query: 4 KGTFKVEYLQKIEKEVQEEWDREKIYEETVGDAVRSSPDDKFFTTFPFPYMNGRLHLGHT 63
K T + + L +IE VQ+ W+ EK++E + D+
Sbjct: 7 KSTARRDRLLEIEVAVQKWWEEEKVFE--------AEAGDE------------------- 39
Query: 64 FSLSKFREKIYEETVGDAVRSSPDDKFFTTFPFPYMNGRLHLGHTFSLSKCEFSVRFNRL 123
P +KFF FP+PYMNG LHLGH FSLSK EF+ ++RL
Sbjct: 40 -------------------PPKPGEKFFGNFPYPYMNGLLHLGHAFSLSKLEFAAAYHRL 80
Query: 124 KGKRVLFPFGFHCTGMPIKACADKLKREMESFGFPPQFPSEDTE------PQTDKDDDDP 177
+G VL PF FHCTGMPIKA ADKL RE++ +G PP FP ED + + +
Sbjct: 81 RGANVLLPFAFHCTGMPIKASADKLAREIQQYGNPPVFPEEDEDEAAAVAAAKAEAEAAA 140
Query: 178 VIKDKSKGKKSKAVAKAGSAKYQWQIMQSLGLEDDEIRKFADASHWLDHFPPLAVQDLRS 237
DK KGKKSKAVAK+G+ KYQW+IM+S GL D EI KF D HWL +FPPLA +DL++
Sbjct: 141 APPDKFKGKKSKAVAKSGTQKYQWEIMRSFGLPDSEIAKFQDPYHWLSYFPPLAKEDLKA 200
Query: 238 IGIHVDWRRTFITTDSNPFFDSFVRWQFMRLRDRHKIKYGKRYTVFSPRDNQPCMDHDRA 297
G+ DWRR+FITTD NP++D+FVRWQF +L+ + KI KRYT++SP D QPC DHDRA
Sbjct: 201 FGLGCDWRRSFITTDVNPYYDAFVRWQFRKLKKKGKIVKDKRYTIYSPLDGQPCADHDRA 260
Query: 298 SGEGVGPQEYTLIKMRLVKPYPAKLCCLDSKPVFLVAATLRPETMYGQTNAWVRPDMAYI 357
SGEGVGPQEY LIKM ++ P+P KL + + G
Sbjct: 261 SGEGVGPQEYVLIKMEVLPPFPGKL-----------------KALEG------------- 290
Query: 358 ALSCLDSKPVFLVAATLRPETMYGQTNAWVRPDMAYIAFTTATGEVFVCTERSARNMAYQ 417
K VFL AATLRPETMYGQTN WV PD Y A+ EVF+ T R+A N+AYQ
Sbjct: 291 -------KKVFLAAATLRPETMYGQTNCWVLPDGKYGAYEINDTEVFILTARAALNLAYQ 343
Query: 418 GFTEVEGKINVLLRLTGQ 435
F++V GK L+ LTG
Sbjct: 344 NFSKVPGKPTCLVELTGY 361
Score = 303 bits (778), Expect = 3e-85
Identities = 123/240 (51%), Positives = 158/240 (65%), Gaps = 36/240 (15%)
Query: 1209 GKDLIQNHLTFFIYIHTAIWGDEPEMWPRGIRANGHLLLNSAKMSKSEGNFLTLTEAVKK 1268
GKDLIQNHLTF IY HTAIW +E WPRG R NGHL+LNS KMSKS GNFLTL +A+++
Sbjct: 678 GKDLIQNHLTFAIYNHTAIWAEEH--WPRGFRCNGHLMLNSEKMSKSTGNFLTLRQAIEE 735
Query: 1269 FSADGMRLCLADSGDSVEDANFVESMADAAVKKFSADGMRLCLADSGDSVEDANFVESMA 1328
FSAD R LAD+GD V+DANFV A+AA
Sbjct: 736 FSADATRFALADAGDGVDDANFVFETANAA------------------------------ 765
Query: 1329 DAGILRLYTFIEWVKEILATQSTLRTGSQDSFNDKVFLSEMNLKIKETEDHYTKMLFKEA 1388
ILRL I W++E+LA +S+LRTG ++ D+VF +E+N+ I ETE +Y M+F+EA
Sbjct: 766 ---ILRLTKEIAWMEEVLAAESSLRTGPPSTYADRVFENEINIAIAETEKNYEAMMFREA 822
Query: 1389 LRTGFFELQAARDKYRELTAAEGGMHRTLVLRFVEVQALLLCPVCPHVAEHVEMNLKIKE 1448
L++GF++LQAARD+YR L+ GGM+R LV RF++VQ L+ P+CPH AEHV + KE
Sbjct: 823 LKSGFYDLQAARDEYR-LSCGSGGMNRDLVWRFMDVQTRLITPICPHYAEHVWREILKKE 881
Score = 281 bits (721), Expect = 6e-78
Identities = 127/289 (43%), Positives = 161/289 (55%), Gaps = 54/289 (18%)
Query: 352 PDMAYIALSCLDSKPVFLVAATLRPETMYGQTNAWVRP-DMAYIAFTTATGE---VFVCT 407
PD Y+ALS L +KP YG + WV P ++ I G+ VC
Sbjct: 403 PD-DYMALSDLKAKPAL--------RAKYGVKDEWVLPFEVVPIINIPEFGDKSAEKVCE 453
Query: 408 E------------RSARNMAY-QGFT---------------EVEGKINVLLRLTGQVCI- 438
+ A+ + Y +GFT E + I L GQ +
Sbjct: 454 DLKIKSQNDKEKLAEAKRLTYLKGFTDGTMLVGEYAGRKVQEAKPLIKKKLIEAGQAILY 513
Query: 439 ---------RSGDECVVALCDQWYLDYGEPTWKAAAEQCLANMNTYHDEVRRNFGASLNW 489
RSGDECVVAL DQWYL YGE WK AE+CL+ MN Y DE R F +L W
Sbjct: 514 SEPEKKVMSRSGDECVVALTDQWYLTYGEEEWKKKAEKCLSKMNLYSDETRHGFEHTLGW 573
Query: 490 LHEYACSRTYGLGTKLPWDEQWLIESLSDSTIYMAYYTVAHLLQGGTFRGENGNALNIKA 549
L+++ACSR++GLGT++PWDEQ+LIESLSDSTIYMAYYTVAHLLQGG G++ ++ IK
Sbjct: 574 LNQWACSRSFGLGTRIPWDEQFLIESLSDSTIYMAYYTVAHLLQGGDMYGKDKSS--IKP 631
Query: 550 EDLTPEVWDYVFFKSAPFPPKCRVPKAKLDIMRREFQYWYPVDLRCSGK 598
E +T EVWD+VF P P +P L+ M++EF+YWYP DLR SGK
Sbjct: 632 EQMTDEVWDFVFCGG-PLPKSSDIPAELLEKMKQEFEYWYPFDLRVSGK 679
Score = 120 bits (302), Expect = 3e-27
Identities = 44/67 (65%), Positives = 51/67 (76%)
Query: 729 DIIGVALKAPVTSHSVIYTLPMLSIREDKGTGIVTSVPSDSPDDYAALVDLKKKPPFREK 788
D+IG+ LK+P+ + VIY LPML+I DKGTG+VTSVPSDSPDDY AL DLK KP R K
Sbjct: 362 DLIGLPLKSPLAFNEVIYALPMLTILTDKGTGVVTSVPSDSPDDYMALSDLKAKPALRAK 421
Query: 789 YHVTDEM 795
Y V DE
Sbjct: 422 YGVKDEW 428
Score = 85.9 bits (213), Expect = 1e-16
Identities = 31/39 (79%), Positives = 36/39 (92%)
Query: 601 TKLPWDEQWLIESLSDSTIYMAYYTVAHLLQGGTFRGEN 639
T++PWDEQ+LIESLSDSTIYMAYYTVAHLLQGG G++
Sbjct: 587 TRIPWDEQFLIESLSDSTIYMAYYTVAHLLQGGDMYGKD 625
>gnl|CDD|232955 TIGR00395, leuS_arch, leucyl-tRNA synthetase, archaeal and cytosolic
family. The leucyl-tRNA synthetases belong to two
families so broadly different that they are represented
by separate models. This model includes both archaeal and
cytosolic eukaryotic leucyl-tRNA synthetases; the
eubacterial and mitochondrial forms differ so
substantially that some other tRNA ligases score higher
by this model than does any eubacterial LeuS [Protein
synthesis, tRNA aminoacylation].
Length = 938
Score = 400 bits (1029), Expect = e-120
Identities = 192/562 (34%), Positives = 279/562 (49%), Gaps = 120/562 (21%)
Query: 653 VLPYDPVPIIQVPEYGNLCAVTVYEKLKIQSQNDKDKLQEAKELVYLKGFYDGIMLVG-- 710
V+ +PVP+I YG+L A + E+ I+SQ DK+ L+EA +++Y + ++ G+M+
Sbjct: 335 VIDIEPVPLIHTDGYGDLPAKEIVEEKGIKSQKDKNLLEEATKILYKEEYHTGVMIYNIP 394
Query: 711 EFKGKKVQEVKKLLQKKIDIIGVALKAPVTSHSVIYTLPMLSIREDKGTGIVTSVPSDSP 770
+KG KV E K+ ++ D+I D G V S+SP
Sbjct: 395 PYKGMKVSEAKEKVKA--DLI------------------------DAGLADVMYEFSESP 428
Query: 771 DDYAALVDLKKKPPFREKYHVTDEMCVVALC-DQWYLDYGEPTWKAAAEQCLANMNTYHD 829
V + C+V + DQW++ Y + +WK A +CL M +
Sbjct: 429 ------VICRCGTD-----------CIVKVVEDQWFVKYSDESWKELAHECLEGMRIIPE 471
Query: 830 EVRRNFGASLNWLHEYACSRTYGLGTKLPWDEQWLIESLSDSTIYMAYYTVAHLLQGGTF 889
EV+ F ++WL ++AC R YGLGT+LPWDE+WLIESLSDSTIYMAYYT+AH L
Sbjct: 472 EVKNAFEGKIDWLKDWACCRRYGLGTRLPWDEKWLIESLSDSTIYMAYYTIAHYL----- 526
Query: 890 RGENGNALNIKAEDLTPEVWDYVFFKAAPFPPKCRVPKAKLDIMRREFQYWYPVDLRCSG 949
N E +T E +DY+F +P + +RREF+YWYP+D R
Sbjct: 527 -----NKDYYGNEQMTDEFFDYIFLGKGDVK-NTNIPLPAIQKLRREFEYWYPLDWRI-- 578
Query: 950 KDLIQNHLTFFIYIHTAIWGDEPEMWPRGIRANGHLLLNSAKDLIQNHLTFFIYKLFSDL 1009
S KDLI NHLTF+I+
Sbjct: 579 ---------------------------------------SGKDLIPNHLTFYIFH----- 594
Query: 1010 IQNHLTFFIYIHTAIWGDEPEMWPRGIRANGHLLLNSAKMSKSEGNFLTLTEAVKKFSAD 1069
H AI+ + WPRGI NG+++L KMSKS+GN LTL +AV+KF AD
Sbjct: 595 -----------HVAIF--PEKFWPRGIVVNGYVMLEGKKMSKSKGNVLTLEQAVEKFGAD 641
Query: 1070 GMRLCLADSGDSVEDANFVESMADAGILRLYTFIEWVKEILATQSTLRTGSQDSFNDKVF 1129
RL +AD+ ++V+DA++ ES + ILRL E+ +EI +S L TG + SF D+
Sbjct: 642 VARLYIADAAETVQDADWKESEVEGTILRLERLYEFAEEI-TKESNLETGEETSFIDRWL 700
Query: 1130 LSEMNLKIKETEDHYTKMLFKEALRTGFFELQAARDKYRELTAAEGGMHRTLVLRFVEVQ 1189
S MN IKET + ++A++ F+LQA D YR G H+ ++ R++E
Sbjct: 701 ESRMNAAIKETYEAMENFQTRKAVKYALFDLQADVDWYRR---RGGVNHKDVLARYLETW 757
Query: 1190 ALLLCPVCPHVAEHVYQLLGKD 1211
LL P PH AE +++ +G +
Sbjct: 758 IKLLAPFAPHFAEEMWEEVGNE 779
Score = 257 bits (657), Expect = 1e-70
Identities = 98/284 (34%), Positives = 131/284 (46%), Gaps = 59/284 (20%)
Query: 84 SSPDD--KFFTTFPFPYMNGRLHLGHTFSLSKCEFSVRFNRLKGKRVLFPFGFHCTGMPI 141
+ PDD KFF T +PY+NG +H GH + + E S RF R+KGK VLFP GFH TG PI
Sbjct: 19 ADPDDREKFFLTMAYPYLNGVMHAGHCRTFTIPEVSARFERMKGKNVLFPLGFHVTGTPI 78
Query: 142 KACADKLKREMESFGFPPQFPSEDTEPQTDKDDDDPVIKDKSKGKKSKAVAKAGSAKYQW 201
A+ +KR E
Sbjct: 79 LGLAELIKRRDELTI--------------------------------------------K 94
Query: 202 QIMQSLGLEDDEIRKFADASHWLDHFPPLAVQDLRSIGIHVDWRRTFITTDSNPFFDSFV 261
+ + +E+ KF D + +++F A +S+G +DWRR+F TTD P++D F+
Sbjct: 95 NYTEVHAIPREELLKFTDPEYIVEYFSREAESACKSMGYSIDWRRSFKTTD--PYYDRFI 152
Query: 262 RWQFMRLRDRHKIKYGKRYTVFSPRDNQPCMDHDRASGEGVGPQEYTLIKMRLVKPYPAK 321
WQ +L++ I G+ + P+D P DHD SGEGV EY LIK L
Sbjct: 153 EWQMNKLKELGLIVKGEHPVRYCPKDGNPVEDHDLLSGEGVTIVEYILIKFEL------- 205
Query: 322 LCCLDSKPVFLVAATLRPETMYGQTNAWVRPDMAYIALSCLDSK 365
D F VAATLRPET+YG TN WV P + Y+ K
Sbjct: 206 ---EDGAFYF-VAATLRPETVYGVTNCWVNPTITYVIAEVGGEK 245
Score = 194 bits (495), Expect = 2e-50
Identities = 74/165 (44%), Positives = 99/165 (60%), Gaps = 12/165 (7%)
Query: 435 QVCIRSGDECVVALC-DQWYLDYGEPTWKAAAEQCLANMNTYHDEVRRNFGASLNWLHEY 493
V R G +C+V + DQW++ Y + +WK A +CL M +EV+ F ++WL ++
Sbjct: 428 PVICRCGTDCIVKVVEDQWFVKYSDESWKELAHECLEGMRIIPEEVKNAFEGKIDWLKDW 487
Query: 494 ACSRTYGLGTKLPWDEQWLIESLSDSTIYMAYYTVAHLLQGGTFRGENGNALNIKAEDLT 553
AC R YGLGT+LPWDE+WLIESLSDSTIYMAYYT+AH L N E +T
Sbjct: 488 ACCRRYGLGTRLPWDEKWLIESLSDSTIYMAYYTIAHYL----------NKDYYGNEQMT 537
Query: 554 PEVWDYVFFKSAPFPPKCRVPKAKLDIMRREFQYWYPVDLRCSGK 598
E +DY+F +P + +RREF+YWYP+D R SGK
Sbjct: 538 DEFFDYIFLGKGDV-KNTNIPLPAIQKLRREFEYWYPLDWRISGK 581
Score = 186 bits (475), Expect = 4e-48
Identities = 87/232 (37%), Positives = 122/232 (52%), Gaps = 39/232 (16%)
Query: 1209 GKDLIQNHLTFFIYIHTAIWGDEPEMWPRGIRANGHLLLNSAKMSKSEGNFLTLTEAVKK 1268
GKDLI NHLTF+I+ H AI+ + WPRGI NG+++L KMSKS+GN LTL +AV+K
Sbjct: 580 GKDLIPNHLTFYIFHHVAIF--PEKFWPRGIVVNGYVMLEGKKMSKSKGNVLTLEQAVEK 637
Query: 1269 FSADGMRLCLADSGDSVEDANFVESMADAAVKKFSADGMRLCLADSGDSVEDANFVESMA 1328
F AD RL +AD+ ++V+DA++ ES +
Sbjct: 638 FGADVARLYIADAAETVQDADWKESEVEGT------------------------------ 667
Query: 1329 DAGILRLYTFIEWVKEILATQSTLRTGSQDSFNDKVFLSEMNLKIKETEDHYTKMLFKEA 1388
ILRL E+ +EI +S L TG + SF D+ S MN IKET + ++A
Sbjct: 668 ---ILRLERLYEFAEEI-TKESNLETGEETSFIDRWLESRMNAAIKETYEAMENFQTRKA 723
Query: 1389 LRTGFFELQAARDKYRELTAAEGGMHRTLVLRFVEVQALLLCPVCPHVAEHV 1440
++ F+LQA D YR G H+ ++ R++E LL P PH AE +
Sbjct: 724 VKYALFDLQADVDWYRR---RGGVNHKDVLARYLETWIKLLAPFAPHFAEEM 772
Score = 81.8 bits (202), Expect = 2e-15
Identities = 30/90 (33%), Positives = 49/90 (54%), Gaps = 3/90 (3%)
Query: 1441 EMNLKIKETEDHYTKMLFKEALRTGFFELQAARDKYRELTAAEGGMHRTLVLRFVEVQAL 1500
MN IKET + ++A++ F+LQA D YR G H+ ++ R++E
Sbjct: 703 RMNAAIKETYEAMENFQTRKAVKYALFDLQADVDWYRR---RGGVNHKDVLARYLETWIK 759
Query: 1501 LLCPVCPHVAEHVYQLLGKKGSIVKARWPE 1530
LL P PH AE +++ +G +G + A++PE
Sbjct: 760 LLAPFAPHFAEEMWEEVGNEGFVSLAKFPE 789
Score = 71.4 bits (175), Expect = 3e-12
Identities = 27/39 (69%), Positives = 31/39 (79%)
Query: 601 TKLPWDEQWLIESLSDSTIYMAYYTVAHLLQGGTFRGEN 639
T+LPWDE+WLIESLSDSTIYMAYYT+AH L + E
Sbjct: 497 TRLPWDEKWLIESLSDSTIYMAYYTIAHYLNKDYYGNEQ 535
Score = 56.8 bits (137), Expect = 9e-08
Identities = 27/72 (37%), Positives = 35/72 (48%), Gaps = 1/72 (1%)
Query: 729 DIIGVALKAPVTSHSVIYTLPMLSIREDKGTGIVTSVPSDSPDDYAALVDLKKKPPFREK 788
IG + PV V LP + KGTG+V SVP+ +PDDY AL DL P +
Sbjct: 273 QFIGKKVHNPVVGPEV-PILPAEFVDTTKGTGVVMSVPAHAPDDYIALEDLLHDPEYLGI 331
Query: 789 YHVTDEMCVVAL 800
V ++ V L
Sbjct: 332 KPVVIDIEPVPL 343
>gnl|CDD|237049 PRK12300, leuS, leucyl-tRNA synthetase; Reviewed.
Length = 897
Score = 360 bits (926), Expect = e-106
Identities = 150/420 (35%), Positives = 209/420 (49%), Gaps = 80/420 (19%)
Query: 796 CVVA-LCDQWYLDYGEPTWKAAAEQCLANMNTYHDEVRRNFGASLNWLHEYACSRTYGLG 854
CVV + DQW++DY +P WK A + L NM +E R+ F +++WL + AC+R GLG
Sbjct: 390 CVVKVVKDQWFIDYSDPEWKELAHKALDNMEIIPEEYRKEFENTIDWLKDRACARRRGLG 449
Query: 855 TKLPWDEQWLIESLSDSTIYMAYYTVAHLLQGGTFRGENGNALNIKAEDLTPEVWDYVF- 913
T+LPWDE+W+IESLSDSTIYMAYYT+AH + IK E LTPE +DYVF
Sbjct: 450 TRLPWDEEWIIESLSDSTIYMAYYTIAHKI----------REYGIKPEQLTPEFFDYVFL 499
Query: 914 --FKAAPFPPKCRVPKAKLDIMRREFQYWYPVDLRCSGKDLIQNHLTFFIYIHTAIWGDE 971
K +PK L+ MR EF YWYPVD R
Sbjct: 500 GKGDPEEVSKKTGIPKEILEEMREEFLYWYPVDWRH------------------------ 535
Query: 972 PEMWPRGIRANGHLLLNSAKDLIQNHLTFFIYKLFSDLIQNHLTFFIYIHTAIWGDEPEM 1031
S KDLI NHLTFFI+ + H AI+ E
Sbjct: 536 -----------------SGKDLIPNHLTFFIF---------N-------HVAIFP--EEK 560
Query: 1032 WPRGIRANGHLLLNSAKMSKSEGNFLTLTEAVKKFSADGMRLCLADSGDSVEDANFVESM 1091
WPRGI NG +LL KMSKS+GN + L +A++++ AD +RL L S + ++DA++ E
Sbjct: 561 WPRGIVVNGFVLLEGKKMSKSKGNVIPLRKAIEEYGADVVRLYLTSSAELLQDADWREKE 620
Query: 1092 ADAGILRLYTFIEWVKEILATQSTLRTGSQDSFNDKVFLSEMNLKIKETEDHYTKMLFKE 1151
++ +L F E KE++ + F DK LS +N IKET + ++
Sbjct: 621 VESVRRQLERFYELAKELIEIGG----EEELRFIDKWLLSRLNRIIKETTEAMESFQTRD 676
Query: 1152 ALRTGFFELQAARDKYRELTAAEGGMHRTLVLRFVEVQALLLCPVCPHVAEHVYQLLGKD 1211
A++ F+EL Y G + ++ +E+ LL P PH+AE ++ LG +
Sbjct: 677 AVQEAFYELLNDLRWYLRRV---GEANNKVLREVLEIWIRLLAPFTPHLAEELWHKLGGE 733
Score = 319 bits (821), Expect = 4e-92
Identities = 136/344 (39%), Positives = 178/344 (51%), Gaps = 70/344 (20%)
Query: 658 PVPIIQVPEYGNLCAVTVYEKLKIQSQNDKDKLQEAKELVYLKGFYDGIML--VGEFKGK 715
P+P+I+V YG A V EKL I+SQ D +L+EA + VY F+ G++ GE+ GK
Sbjct: 294 PIPLIEVEGYGEFPAKEVVEKLGIKSQEDP-ELEEATKEVYRAEFHKGVLKENTGEYAGK 352
Query: 716 KVQEVKKLLQKKIDIIGVALKAPVTSHSVIYTLPMLSIREDK-----GTGIVTSVPSDSP 770
V+E ++ + K + G+A ++Y GT V V
Sbjct: 353 PVREAREKITKDLIEKGIAD--------IMYEFS-----NRPVYCRCGTECVVKV----- 394
Query: 771 DDYAALVDLKKKPPFREKYHVTDEMCVVALCDQWYLDYGEPTWKAAAEQCLANMNTYHDE 830
+ DQW++DY +P WK A + L NM +E
Sbjct: 395 -----------------------------VKDQWFIDYSDPEWKELAHKALDNMEIIPEE 425
Query: 831 VRRNFGASLNWLHEYACSRTYGLGTKLPWDEQWLIESLSDSTIYMAYYTVAHLLQGGTFR 890
R+ F +++WL + AC+R GLGT+LPWDE+W+IESLSDSTIYMAYYT+AH +
Sbjct: 426 YRKEFENTIDWLKDRACARRRGLGTRLPWDEEWIIESLSDSTIYMAYYTIAHKI------ 479
Query: 891 GENGNALNIKAEDLTPEVWDYVF---FKAAPFPPKCRVPKAKLDIMRREFQYWYPVDLRC 947
IK E LTPE +DYVF K +PK L+ MR EF YWYPVD R
Sbjct: 480 ----REYGIKPEQLTPEFFDYVFLGKGDPEEVSKKTGIPKEILEEMREEFLYWYPVDWRH 535
Query: 948 SGKDLIQNHLTFFIYIHTAIWGDEPEMWPRGIRANGHLLLNSAK 991
SGKDLI NHLTFFI+ H AI+ E WPRGI NG +LL K
Sbjct: 536 SGKDLIPNHLTFFIFNHVAIFP--EEKWPRGIVVNGFVLLEGKK 577
Score = 226 bits (579), Expect = 6e-61
Identities = 83/167 (49%), Positives = 103/167 (61%), Gaps = 15/167 (8%)
Query: 436 VCIRSGDECVVA-LCDQWYLDYGEPTWKAAAEQCLANMNTYHDEVRRNFGASLNWLHEYA 494
C R G ECVV + DQW++DY +P WK A + L NM +E R+ F +++WL + A
Sbjct: 383 YC-RCGTECVVKVVKDQWFIDYSDPEWKELAHKALDNMEIIPEEYRKEFENTIDWLKDRA 441
Query: 495 CSRTYGLGTKLPWDEQWLIESLSDSTIYMAYYTVAHLLQGGTFRGENGNALNIKAEDLTP 554
C+R GLGT+LPWDE+W+IESLSDSTIYMAYYT+AH + IK E LTP
Sbjct: 442 CARRRGLGTRLPWDEEWIIESLSDSTIYMAYYTIAHKI----------REYGIKPEQLTP 491
Query: 555 EVWDYVF---FKSAPFPPKCRVPKAKLDIMRREFQYWYPVDLRCSGK 598
E +DYVF K +PK L+ MR EF YWYPVD R SGK
Sbjct: 492 EFFDYVFLGKGDPEEVSKKTGIPKEILEEMREEFLYWYPVDWRHSGK 538
Score = 178 bits (453), Expect = 2e-45
Identities = 79/255 (30%), Positives = 115/255 (45%), Gaps = 58/255 (22%)
Query: 103 LHLGHTFSLSKCEFSVRFNRLKGKRVLFPFGFHCTGMPIKACADKLKREMESFGFPPQFP 162
LH+GH + + + R+ R++G VLFP FH TG PI A+++ R
Sbjct: 1 LHVGHGRTYTIGDVIARYKRMRGYNVLFPMAFHVTGTPILGIAERIAR------------ 48
Query: 163 SEDTEPQTDKDDDDPVIKDKSKGKKSKAVAKAGSAKYQWQIMQSLGLEDDEIRKFADASH 222
G + G+ ++E+ KF D +
Sbjct: 49 --------------------------------GDPETIELYKSLYGIPEEELEKFKDPEY 76
Query: 223 WLDHFPPLAVQDLRSIGIHVDWRRTFITTDSNPFFDSFVRWQFMRLRDRHKIKYGKRYTV 282
+++F A +D++ IG +DWRR F TTD P + F+ WQF +L+++ I G
Sbjct: 77 IVEYFSEEAKEDMKRIGYSIDWRREFTTTD--PEYSKFIEWQFRKLKEKGLIVKGSHPVR 134
Query: 283 FSPRDNQPCMDHDRASGEGVGPQEYTLIKMRLVKPYPAKLCCLDSKPVFLVAATLRPETM 342
+ P DN P DHD GE EYTLIK +S+ + L AATLRPET+
Sbjct: 135 YCPNDNNPVGDHDLLDGEEPEIVEYTLIKFE------------ESEDLILPAATLRPETI 182
Query: 343 YGQTNAWVRPDMAYI 357
+G TN WV PD Y+
Sbjct: 183 FGVTNLWVNPDATYV 197
Score = 161 bits (409), Expect = 5e-40
Identities = 71/230 (30%), Positives = 108/230 (46%), Gaps = 42/230 (18%)
Query: 1209 GKDLIQNHLTFFIYIHTAIWGDEPEMWPRGIRANGHLLLNSAKMSKSEGNFLTLTEAVKK 1268
GKDLI NHLTFFI+ H AI+ E WPRGI NG +LL KMSKS+GN + L +A+++
Sbjct: 537 GKDLIPNHLTFFIFNHVAIFP--EEKWPRGIVVNGFVLLEGKKMSKSKGNVIPLRKAIEE 594
Query: 1269 FSADGMRLCLADSGDSVEDANFVESMADAAVKKFSADGMRLCLADSGDSVEDANFVESMA 1328
+ AD +RL L S + ++DA++ E ++ ++
Sbjct: 595 YGADVVRLYLTSSAELLQDADWREKEVESVRRQ--------------------------- 627
Query: 1329 DAGILRLYTFIEWVKEILATQSTLRTGSQDSFNDKVFLSEMNLKIKETEDHYTKMLFKEA 1388
+ R Y + + EI + F DK LS +N IKET + ++A
Sbjct: 628 ---LERFYELAKELIEI-------GGEEELRFIDKWLLSRLNRIIKETTEAMESFQTRDA 677
Query: 1389 LRTGFFELQAARDKYRELTAAEGGMHRTLVLRFVEVQALLLCPVCPHVAE 1438
++ F+EL Y G + ++ +E+ LL P PH+AE
Sbjct: 678 VQEAFYELLNDLRWYLRRV---GEANNKVLREVLEIWIRLLAPFTPHLAE 724
Score = 81.8 bits (203), Expect = 2e-15
Identities = 31/63 (49%), Positives = 42/63 (66%), Gaps = 6/63 (9%)
Query: 582 RREFQY---WYPVDLRCSGKVS--TKLPWDEQWLIESLSDSTIYMAYYTVAHLLQGGTFR 636
R+EF+ W D C+ + T+LPWDE+W+IESLSDSTIYMAYYT+AH ++ +
Sbjct: 427 RKEFENTIDWLK-DRACARRRGLGTRLPWDEEWIIESLSDSTIYMAYYTIAHKIREYGIK 485
Query: 637 GEN 639
E
Sbjct: 486 PEQ 488
Score = 76.4 bits (189), Expect = 9e-14
Identities = 45/177 (25%), Positives = 75/177 (42%), Gaps = 33/177 (18%)
Query: 1441 EMNLKIKETEDHYTKMLFKEALRTGFFELQAARDKYRELTAAEGGMHRTLVLRFVEVQAL 1500
+N IKET + ++A++ F+EL Y G + ++ +E+
Sbjct: 657 RLNRIIKETTEAMESFQTRDAVQEAFYELLNDLRWYLRRV---GEANNKVLREVLEIWIR 713
Query: 1501 LLCPVCPHVAEHVYQLLGKKGSIVKARWPEGGP--IDDILVRSSSY---LMEAAHAFRLQ 1555
LL P PH+AE ++ LG +G + +WPE ID+ + Y L+E
Sbjct: 714 LLAPFTPHLAEELWHKLGGEGFVSLEKWPEPDESKIDEEAELAEEYVKRLIE-------D 766
Query: 1556 VKNHILTASKKKGKKVGGGGVGLVEKPTHATVWVAKTFPPWQSIVLTTMKQMMEVRE 1612
++ IL +K K KKV ++VA P W+ VL + +V+E
Sbjct: 767 IRE-ILKVAKIKPKKV--------------YIYVA---PDWKYEVLEIAAENGDVKE 805
Score = 51.8 bits (125), Expect = 3e-06
Identities = 29/80 (36%), Positives = 39/80 (48%), Gaps = 14/80 (17%)
Query: 704 DGIMLVGEFKGKKVQEVKKLLQKKIDIIGVALKAPVTSHSVIYTLPMLSIREDKGTGIVT 763
+ ++ E KG ++IG +K PVT V LP + D GTG+V
Sbjct: 221 RDVEIIEEIKGS-------------ELIGKKVKNPVTGKEVP-ILPADFVDPDNGTGVVM 266
Query: 764 SVPSDSPDDYAALVDLKKKP 783
SVP+ +P DY AL DLKK
Sbjct: 267 SVPAHAPYDYVALRDLKKNK 286
>gnl|CDD|223569 COG0495, LeuS, Leucyl-tRNA synthetase [Translation, ribosomal
structure and biogenesis].
Length = 814
Score = 256 bits (655), Expect = 4e-71
Identities = 103/427 (24%), Positives = 149/427 (34%), Gaps = 95/427 (22%)
Query: 794 EMCVVALCDQWYLDYGEPTW-KAAAEQCLANMNTYHDEVRRNFGASLNWLHEYACSRTYG 852
V QW+++Y W K+ + H E +WL R G
Sbjct: 403 CGLVKRGLGQWFVNYRLRDWLKSRQRYWGEPIPIIHCEDCGVVPVPEDWLPVKLPERVRG 462
Query: 853 LGT--KLPWDEQWLIESLSDSTIYMAYYTVAHLLQGGTFRGENGNALNIKAEDLTPEVWD 910
LGT LPWDE+W+IESL DST Y T+ + +D
Sbjct: 463 LGTGSPLPWDEEWVIESLPDSTAYRETDTMDTFIDSSW---------------YYLRFFD 507
Query: 911 YVFFKAAPFPPKCRVPKAKLDIMRREFQYWYPVDLRCSGKDLIQNHLTFFIYIHTAIWGD 970
+F PF R EF YWYPVDL G + HL +F + H A++
Sbjct: 508 PIFLGELPF-------------DREEFNYWYPVDLYIGGIEHAVLHLLYFRFFHKALF-- 552
Query: 971 EPEMWPRGIRANGHLLLNSAKDLIQNHLTFFIYKLFSDLIQNHLTFFIYIHTAIWGDEPE 1030
+ + P+ DEP
Sbjct: 553 DEGLVPK-------------------------------------------------DEP- 562
Query: 1031 MWPRGIRANGHLLL-NSAKMSKSEGNFLTLTEAVKKFSADGMRLCLADSGDSVEDANFVE 1089
+ + G +L KMSKS+GN + EAV+K+ AD +RL + + +D + E
Sbjct: 563 --FKKLITQGMVLGEEGEKMSKSKGNVVDPEEAVEKYGADTVRLYIMFAAPPEQDLEWSE 620
Query: 1090 SMADAGILRLYTFIEWVKEILATQSTLRTGSQDSFNDKVFLSEMNLKIKETEDHYTKMLF 1149
S + L VKE L T Q D+ L IK+ + +
Sbjct: 621 SGVEGARRFLQRVWNLVKEHLEKLVEELTKEQ-GKEDRWLLHRT---IKKVTEDFEARQT 676
Query: 1150 KEALRTGFFELQAARDKYRELTAAEGGMHRTLVLRFVEVQALLLCPVCPHVAEHVYQLLG 1209
EL A KY T + + R +E LL P PH+AE +++ LG
Sbjct: 677 FNTAIAALMELLNALRKYLRRTEGDRKVLR----EALETWVRLLAPFAPHIAEELWEELG 732
Query: 1210 -KDLIQN 1215
+ + N
Sbjct: 733 NEGFVSN 739
Score = 135 bits (342), Expect = 4e-32
Identities = 49/169 (28%), Positives = 62/169 (36%), Gaps = 33/169 (19%)
Query: 433 TGQVCIRSGDECVVALCDQWYLDYGEPTW-KAAAEQCLANMNTYHDEVRRNFGASLNWLH 491
+V IR G V QW+++Y W K+ + H E +WL
Sbjct: 396 EAKVKIRCG--LVKRGLGQWFVNYRLRDWLKSRQRYWGEPIPIIHCEDCGVVPVPEDWLP 453
Query: 492 EYACSRTYGLGT--KLPWDEQWLIESLSDSTIYMAYYTVAHLLQGGTFRGENGNALNIKA 549
R GLGT LPWDE+W+IESL DST Y T+ +
Sbjct: 454 VKLPERVRGLGTGSPLPWDEEWVIESLPDSTAYRETDTMDTFIDSSW------------- 500
Query: 550 EDLTPEVWDYVFFKSAPFPPKCRVPKAKLDIMRREFQYWYPVDLRCSGK 598
+D +F PF R EF YWYPVDL G
Sbjct: 501 --YYLRFFDPIFLGELPF-------------DREEFNYWYPVDLYIGGI 534
Score = 127 bits (320), Expect = 2e-29
Identities = 42/171 (24%), Positives = 71/171 (41%), Gaps = 16/171 (9%)
Query: 219 DASHWLDHFPPLAVQDLRSIGIHVDWRRTFITTDSNPFFDSFVRWQFMRLRDRHKIKYGK 278
D + W + + L+S+G +DWRR F T D P + +++WQF++L ++ +
Sbjct: 97 DPAKWTYYNIAYMKKQLKSLGFSIDWRREFATCD--PEYYKWIQWQFLKLYEKGLAYRKE 154
Query: 279 RYTVFSPRDNQPCMDHDR------ASGEGVGPQEYTLIKMRLVKPYPAKLCCLDSKPVFL 332
+ P D + GE V +E T ++ L LD
Sbjct: 155 APVNWCPVDGTVLANEQVIDGGCWRCGEPVEIKELTQWFFKITDYADELLDDLD------ 208
Query: 333 VAATLRPETMYGQTNAWVRPD-MAYIALSCLDSKPVF-LVAATLRPETMYG 381
ATL PET+ G W+ P +A + + + T RP+T++G
Sbjct: 209 KLATLWPETVKGMQRNWIGPSEGYEVAFVVDGEEEIVSIEVFTTRPDTLFG 259
Score = 124 bits (314), Expect = 1e-28
Identities = 53/238 (22%), Positives = 82/238 (34%), Gaps = 49/238 (20%)
Query: 1209 GKDLIQNHLTFFIYIHTAIWGDEPEMWPRG-----IRANGHLLL-NSAKMSKSEGNFLTL 1262
G + HL +F + H A++ + + P+ + G +L KMSKS+GN +
Sbjct: 533 GIEHAVLHLLYFRFFHKALF--DEGLVPKDEPFKKLITQGMVLGEEGEKMSKSKGNVVDP 590
Query: 1263 TEAVKKFSADGMRLCLADSGDSVEDANFVESMADAAVKKFSADGMRLCLADSGDSVEDAN 1322
EAV+K+ A D +RL + + +D
Sbjct: 591 EEAVEKYGA---------------------------------DTVRLYIMFAAPPEQDLE 617
Query: 1323 FVESMADAGILRLYTFIEWVKEILATQSTLRTGSQDSFNDKVFLSEMNLKIKETEDHYTK 1382
+ ES + L VKE L T Q D+ L IK+ + +
Sbjct: 618 WSESGVEGARRFLQRVWNLVKEHLEKLVEELTKEQ-GKEDRWLLHRT---IKKVTEDFEA 673
Query: 1383 MLFKEALRTGFFELQAARDKYRELTAAEGGMHRTLVLRFVEVQALLLCPVCPHVAEHV 1440
EL A KY T + + R +E LL P PH+AE +
Sbjct: 674 RQTFNTAIAALMELLNALRKYLRRTEGDRKVLR----EALETWVRLLAPFAPHIAEEL 727
Score = 106 bits (267), Expect = 4e-23
Identities = 33/160 (20%), Positives = 60/160 (37%), Gaps = 64/160 (40%)
Query: 13 QKIEKEVQEEWDREKIYEETVGDAVRSSPDDKFFTTFPFPYMNGRLHLGHTFSLSKFREK 72
++IE++ Q+ W+ K++E D+
Sbjct: 8 REIEEKWQKRWEEAKVFE----------ADE----------------------------- 28
Query: 73 IYEETVGDAVRSSPDDKFFTTFPFPYMNGRLHLGHTFSLSKCEFSVRFNRLKGKRVLFPF 132
S +KF+ FPY +G LH+GH + + + R+ R++G VL P
Sbjct: 29 ----------DSDKPEKFYVLVMFPYPSGALHVGHVRNYTIGDVIARYKRMQGYNVLHPM 78
Query: 133 GFHCTGMPIKACADKL---------------KREMESFGF 157
G+ G+P + A K+ K++++S GF
Sbjct: 79 GWDAFGLPAENAAIKIGTDPAKWTYYNIAYMKKQLKSLGF 118
Score = 68.1 bits (167), Expect = 3e-11
Identities = 24/94 (25%), Positives = 39/94 (41%), Gaps = 4/94 (4%)
Query: 1437 AEHVEMNLKIKETEDHYTKMLFKEALRTGFFELQAARDKYRELTAAEGGMHRTLVLRFVE 1496
+ ++ IK+ + + EL A KY T + + R +E
Sbjct: 655 EDRWLLHRTIKKVTEDFEARQTFNTAIAALMELLNALRKYLRRTEGDRKVLR----EALE 710
Query: 1497 VQALLLCPVCPHVAEHVYQLLGKKGSIVKARWPE 1530
LL P PH+AE +++ LG +G + A WPE
Sbjct: 711 TWVRLLAPFAPHIAEELWEELGNEGFVSNAPWPE 744
Score = 56.5 bits (137), Expect = 1e-07
Identities = 19/44 (43%), Positives = 24/44 (54%), Gaps = 1/44 (2%)
Query: 588 WYPVDLRCSGKVSTKLPWDEQWLIESLSDSTIYMAYYTVAHLLQ 631
P +R G S LPWDE+W+IESL DST Y T+ +
Sbjct: 455 KLPERVRGLGTGS-PLPWDEEWVIESLPDSTAYRETDTMDTFID 497
Score = 37.6 bits (88), Expect = 0.070
Identities = 15/48 (31%), Positives = 22/48 (45%), Gaps = 6/48 (12%)
Query: 729 DIIGVALKAPVTSHSVIYTLPMLSIREDKGTGIVTSVPSDSPDDYAAL 776
++G + P T L + E KGTG+V SVP+ + D L
Sbjct: 270 PLVGKLVTNPQTP------LVAEFVDECKGTGVVESVPAHAEKDGVFL 311
>gnl|CDD|173906 cd00812, LeuRS_core, catalytic core domain of leucyl-tRNA
synthetases. Leucyl tRNA synthetase (LeuRS) catalytic
core domain. This class I enzyme is a monomer which
aminoacylates the 2'-OH of the nucleotide at the 3' of
the appropriate tRNA. The core domain is based on the
Rossman fold and is responsible for the ATP-dependent
formation of the enzyme bound aminoacyl-adenylate. It
contains the characteristic class I HIGH and KMSKS
motifs, which are involved in ATP binding. In Aquifex
aeolicus, the gene encoding LeuRS is split in two, just
before the KMSKS motif. Consequently, LeuRS is a
heterodimer, which likely superimposes with the LeuRS
monomer found in most other organisms. LeuRS has an
insertion in the core domain, which is subject to both
deletions and rearrangements and thus differs between
prokaryotic LeuRS and archaeal/eukaryotic LeuRS. This
editing region hydrolyzes mischarged cognate tRNAs and
thus prevents the incorporation of chemically similar
amino acids.
Length = 314
Score = 217 bits (555), Expect = 5e-63
Identities = 80/291 (27%), Positives = 109/291 (37%), Gaps = 103/291 (35%)
Query: 799 ALCDQWYLDYGEPTWKAAAEQCLANMNTYHDEVRRNFGASLNWLHEYACSRTYGLGTKLP 858
L DQW+L Y E WK + L ++ + +EVR NW+ CSR GT +P
Sbjct: 127 KLLDQWFLKYSETEWKEKLLKDLEKLDGWPEEVRAMQ---ENWI---GCSRQRYWGTPIP 180
Query: 859 WDEQWLIESLSDSTIYMAYYTVAHLLQGGTFRGENGNALNIKAEDLTPEVWDYVFFKAAP 918
W +ESLSDST Y A YT AH L+
Sbjct: 181 W--TDTMESLSDSTWYYARYTDAHNLEQPYEG---------------------------- 210
Query: 919 FPPKCRVPKAKLDIMRREFQYWYPVDLRCSGKDLIQNHLTFFIYIHTAIWGDEPEMWPRG 978
L+ R EF+YWYPVD+ GK+ NHL + + H A ++ G
Sbjct: 211 ----------DLEFDREEFEYWYPVDIYIGGKEHAPNHLLYSRFNHKA-------LFDEG 253
Query: 979 IRANGHLLLNSAKDLIQNHLTFFIYKLFSDLIQNHLTFFIYIHTAIWGDEPEMWPRGIRA 1038
+ DE P+G+
Sbjct: 254 L---------------------------------------------VTDE---PPKGLIV 265
Query: 1039 NGHLLLNSAKMSKSEGNFLTLTEAVKKFSADGMRLCLADSGDSVEDANFVE 1089
G +LL KMSKS+GN +T EA+KK+ AD RL + + DA+F
Sbjct: 266 QGMVLLEGEKMSKSKGNVVTPDEAIKKYGADAARLYILFAAP--PDADFDW 314
Score = 135 bits (342), Expect = 1e-34
Identities = 38/161 (23%), Positives = 59/161 (36%), Gaps = 37/161 (22%)
Query: 89 KFFTTFPFPYMNGRLHLGHTFSLSKCEFSVRFNRLKGKRVLFPFGFHCTGMPIKACADKL 148
KF+ FPY +G LH+GH + + + R+ R++G VLFP GF G+P + A K+
Sbjct: 1 KFYILVMFPYPSGALHVGHVRTYTIGDIIARYKRMQGYNVLFPMGFDAFGLPAENAAIKI 60
Query: 149 KREMESFGFPPQFPSEDTEPQTDKDDDDPVIKDKSKGKKSKAVAKAGSAKYQWQIMQSLG 208
R DP + KK K K Y W+ +
Sbjct: 61 GR-------------------------DPEDWTEYNIKKMKEQLKRMGFSYDWRREFTTC 95
Query: 209 LEDDEIRKFADASHWLDHFPP---LAVQDLRSIGIHVDWRR 246
+ + + WL LA + V+W +
Sbjct: 96 DPE-----YYKFTQWLFLKLYEKGLAYKK----EAPVNWCK 127
Score = 133 bits (336), Expect = 7e-34
Identities = 48/152 (31%), Positives = 61/152 (40%), Gaps = 46/152 (30%)
Query: 447 ALCDQWYLDYGEPTWKAAAEQCLANMNTYHDEVRRNFGASLNWLHEYACSRTYGLGTKLP 506
L DQW+L Y E WK + L ++ + +EVR NW+ CSR GT +P
Sbjct: 127 KLLDQWFLKYSETEWKEKLLKDLEKLDGWPEEVRAMQ---ENWI---GCSRQRYWGTPIP 180
Query: 507 WDEQWLIESLSDSTIYMAYYTVAHLLQGGTFRGENGNALNIKAEDLTPEVWDYVFFKSAP 566
W +ESLSDST Y A YT AH L+
Sbjct: 181 W--TDTMESLSDSTWYYARYTDAHNLEQPYE----------------------------- 209
Query: 567 FPPKCRVPKAKLDIMRREFQYWYPVDLRCSGK 598
L+ R EF+YWYPVD+ GK
Sbjct: 210 ---------GDLEFDREEFEYWYPVDIYIGGK 232
Score = 112 bits (282), Expect = 9e-27
Identities = 32/86 (37%), Positives = 48/86 (55%), Gaps = 4/86 (4%)
Query: 1209 GKDLIQNHLTFFIYIHTAIW--GDEPEMWPRGIRANGHLLLNSAKMSKSEGNFLTLTEAV 1266
GK+ NHL + + H A++ G + P+G+ G +LL KMSKS+GN +T EA+
Sbjct: 231 GKEHAPNHLLYSRFNHKALFDEGLVTDEPPKGLIVQGMVLLEGEKMSKSKGNVVTPDEAI 290
Query: 1267 KKFSADGMRLCLADSGDSVEDANFVE 1292
KK+ AD RL + + DA+F
Sbjct: 291 KKYGADAARLYILFAAP--PDADFDW 314
Score = 56.5 bits (137), Expect = 4e-08
Identities = 17/35 (48%), Positives = 20/35 (57%), Gaps = 2/35 (5%)
Query: 601 TKLPWDEQWLIESLSDSTIYMAYYTVAHLLQGGTF 635
T +PW +ESLSDST Y A YT AH L+
Sbjct: 177 TPIPW--TDTMESLSDSTWYYARYTDAHNLEQPYE 209
>gnl|CDD|153413 cd07959, Anticodon_Ia_Leu_AEc, Anticodon-binding domain of archaeal
and eukaryotic cytoplasmic leucyl tRNA synthetases. This
domain is found in leucyl tRNA synthetases (LeuRS), which
belong to the class Ia aminoacyl tRNA synthetases. It
lies C-terminal to the catalytic core domain. In contrast
to other class Ia enzymes, the anticodon is not used as
an identity element in LeuRS (with exceptions such as
Saccharomyces cerevisiae and some other eukaryotes). No
anticodon-binding site can be defined for this family,
which includes archaeal and eukaryotic cytoplasmic
members. LeuRS catalyzes the transfer of leucine to the
3'-end of its tRNA.
Length = 117
Score = 145 bits (367), Expect = 2e-40
Identities = 50/122 (40%), Positives = 71/122 (58%), Gaps = 5/122 (4%)
Query: 1087 FVESMADAGILRLYTFIEWVKEILATQSTLRTGSQDSFNDKVFLSEMNLKIKETEDHYTK 1146
F E A++ ILRL F E +E++ T+ L + +F D+ LS +N IKET + Y
Sbjct: 1 FREEEANSAILRLERFYELAEELIETEGEL---EELTFIDRWLLSRLNRLIKETTEAYEN 57
Query: 1147 MLFKEALRTGFFELQAARDKYRELTAAEGGMHRTLVLRFVEVQALLLCPVCPHVAEHVYQ 1206
M F+EAL+ G +ELQ D YRE A M++ L+ RF+EV LL P PH+AE ++
Sbjct: 58 MQFREALKEGLYELQNDLDWYRERGGAG--MNKDLLRRFIEVWTRLLAPFAPHLAEEIWH 115
Query: 1207 LL 1208
L
Sbjct: 116 EL 117
Score = 142 bits (361), Expect = 1e-39
Identities = 49/118 (41%), Positives = 69/118 (58%), Gaps = 5/118 (4%)
Query: 1323 FVESMADAGILRLYTFIEWVKEILATQSTLRTGSQDSFNDKVFLSEMNLKIKETEDHYTK 1382
F E A++ ILRL F E +E++ T+ L + +F D+ LS +N IKET + Y
Sbjct: 1 FREEEANSAILRLERFYELAEELIETEGEL---EELTFIDRWLLSRLNRLIKETTEAYEN 57
Query: 1383 MLFKEALRTGFFELQAARDKYRELTAAEGGMHRTLVLRFVEVQALLLCPVCPHVAEHV 1440
M F+EAL+ G +ELQ D YRE A M++ L+ RF+EV LL P PH+AE +
Sbjct: 58 MQFREALKEGLYELQNDLDWYRERGGAG--MNKDLLRRFIEVWTRLLAPFAPHLAEEI 113
Score = 99.2 bits (248), Expect = 2e-24
Identities = 34/77 (44%), Positives = 46/77 (59%), Gaps = 2/77 (2%)
Query: 1441 EMNLKIKETEDHYTKMLFKEALRTGFFELQAARDKYRELTAAEGGMHRTLVLRFVEVQAL 1500
+N IKET + Y M F+EAL+ G +ELQ D YRE A M++ L+ RF+EV
Sbjct: 43 RLNRLIKETTEAYENMQFREALKEGLYELQNDLDWYRERGGAG--MNKDLLRRFIEVWTR 100
Query: 1501 LLCPVCPHVAEHVYQLL 1517
LL P PH+AE ++ L
Sbjct: 101 LLAPFAPHLAEEIWHEL 117
>gnl|CDD|215739 pfam00133, tRNA-synt_1, tRNA synthetases class I (I, L, M and V).
Other tRNA synthetase sub-families are too dissimilar to
be included.
Length = 606
Score = 74.3 bits (183), Expect = 3e-13
Identities = 61/288 (21%), Positives = 103/288 (35%), Gaps = 72/288 (25%)
Query: 95 PFPYMNGRLHLGHTFSLSKCEFSVRFNRLKGKRVLFPFGFHCTGMPIKACADKLKREMES 154
P G LH+GH + + + +R+ R++G VL+ G+ G+P + +K
Sbjct: 30 GPPNATGLLHIGHALNKTLKDIVIRYKRMQGFDVLWVPGWDHHGLPTEQKVEK------- 82
Query: 155 FGFPPQFPSEDTEPQTDKDDDDPVIKDKSKGKKSKAVAKAGSAKYQWQIMQSLGLEDDEI 214
K KGKK K G K++ ++
Sbjct: 83 -------------------------KLGIKGKKD--RHKLGREKFR-----------EKC 104
Query: 215 RKFAD--ASHWLDHFPPLAVQDLRSIGIHVDWRRTFITTDSNPFFDSFVRWQFMRLRDRH 272
R++ A F + +G+ DW R + T D ++ V F+RL D+
Sbjct: 105 REWKMEYADEIRSQF--------KRLGVSGDWDREYFTLDPG--LEAAVWRVFVRLHDKG 154
Query: 273 KIKYGKRYTVFSPRDNQPCMDHDRASGEGVGPQEYTLIKMRLVKPYPAKLCCLDSKPVFL 332
I GK+ +SP N + + + GP I + +P D K L
Sbjct: 155 LIYRGKKPVNWSPALNTALSEAEVEYKDVKGP----SIHVA----FPLA----DGKGASL 202
Query: 333 VAATLRPETMYGQTNAWVRPDMAYIALSCLDSKPVFLVAATLRPETMY 380
V T P T+ G T V P+ Y+ + + A +++Y
Sbjct: 203 VIWTTTPWTLPGNTAVAVNPEFNYVKIRVTGEY---YILAEALLKSLY 247
Score = 38.1 bits (89), Expect = 0.041
Identities = 25/71 (35%), Positives = 36/71 (50%), Gaps = 5/71 (7%)
Query: 1018 IYIHTAIWGDEPEMWPRGIRANGHLL-LNSAKMSKSEGNFLTLTEAVKKFSADGMRLCLA 1076
I + TA+ G P + + +G + KMSKS GN + + + K+ AD +RL LA
Sbjct: 539 IVLGTALTGSAPY---KNVLVHGLVRDEQGRKMSKSLGNVIDPLDVIDKYGADALRLWLA 595
Query: 1077 DSGDSVEDANF 1087
S D D NF
Sbjct: 596 SS-DYGRDINF 605
Score = 38.1 bits (89), Expect = 0.041
Identities = 25/71 (35%), Positives = 36/71 (50%), Gaps = 5/71 (7%)
Query: 1221 IYIHTAIWGDEPEMWPRGIRANGHLL-LNSAKMSKSEGNFLTLTEAVKKFSADGMRLCLA 1279
I + TA+ G P + + +G + KMSKS GN + + + K+ AD +RL LA
Sbjct: 539 IVLGTALTGSAPY---KNVLVHGLVRDEQGRKMSKSLGNVIDPLDVIDKYGADALRLWLA 595
Query: 1280 DSGDSVEDANF 1290
S D D NF
Sbjct: 596 SS-DYGRDINF 605
>gnl|CDD|185674 cd00668, Ile_Leu_Val_MetRS_core, catalytic core domain of
isoleucyl, leucyl, valyl and methioninyl tRNA
synthetases. Catalytic core domain of isoleucyl,
leucyl, valyl and methioninyl tRNA synthetases. These
class I enzymes are all monomers. However, in some
species, MetRS functions as a homodimer, as a result of
an additional C-terminal domain. These enzymes
aminoacylate the 2'-OH of the nucleotide at the 3' of
the appropriate tRNA. The core domain is based on the
Rossman fold and is responsible for the ATP-dependent
formation of the enzyme bound aminoacyl-adenylate. It
contains the characteristic class I HIGH and KMSKS
motifs, which are involved in ATP binding. Enzymes in
this subfamily share an insertion in the core domain,
which is subject to both deletions and rearrangements.
This editing region hydrolyzes mischarged cognate tRNAs
and thus prevents the incorporation of chemically
similar amino acids. MetRS has a significantly shorter
insertion, which lacks the editing function.
Length = 312
Score = 72.1 bits (177), Expect = 3e-13
Identities = 44/191 (23%), Positives = 67/191 (35%), Gaps = 57/191 (29%)
Query: 89 KFFTTFPFPYMNGRLHLGHTFSLSKCEFSVRFNRLKGKRVLFPFGFHCTGMPIKACADKL 148
KF+ T P PY NG LHLGH + +F R+ R++G V F G+ G+PI+ A++
Sbjct: 1 KFYVTTPPPYANGSLHLGHALTHIIADFIARYKRMRGYEVPFLPGWDTHGLPIELKAERK 60
Query: 149 KREMESFGFPPQFPSEDTEPQTDKDDDDPVIKDKSKGKKSKAVAKAGSAKYQWQIMQSLG 208
G+K K +
Sbjct: 61 -----------------------------------GGRKKKTIWIE-------------- 71
Query: 209 LEDDEIRKFADASHWLDHFPPLAVQDLRSIGIHVDWRRTFITTDSNPFFDSFVRWQFMRL 268
D +++ +D R +GI DW +ITT+ P + V F RL
Sbjct: 72 ------EFREDPKEFVEEMSGEHKEDFRRLGISYDWSDEYITTE--PEYSKAVELIFSRL 123
Query: 269 RDRHKIKYGKR 279
++ I G
Sbjct: 124 YEKGLIYRGTH 134
Score = 70.1 bits (172), Expect = 1e-12
Identities = 37/195 (18%), Positives = 64/195 (32%), Gaps = 57/195 (29%)
Query: 797 VVALCDQWYLDYGEPTWKAAAEQCLANMNTYHDEVRRNFGASLNWLHEYACSRTYGLGTK 856
V + +QW+ D + +K + L + V+ A L L ++A SR GT
Sbjct: 135 PVRITEQWFFDMPK--FKEKLLKALRRGKIVPEHVKNRMEAWLESLLDWAISRQRYWGTP 192
Query: 857 LPWDEQWLIESLSDSTIYMAYYTVAHLLQGGTFRGENGNALNIKAEDLTPEVWDYVFFKA 916
LP + + + DS I Y K
Sbjct: 193 LP---EDVFDVWFDSGIGPLGSL------------------------------GYPEEKE 219
Query: 917 APFPPKCRVPKAKLDIMRREFQYWYPVDLRCSGKDLIQNHLTFFIYIHTAIWGDEPEMWP 976
F+ YP D GKD+++ F+I + A++G E+ P
Sbjct: 220 -------------------WFKDSYPADWHLIGKDILRGWANFWITMLVALFG---EIPP 257
Query: 977 RGIRANGHLLLNSAK 991
+ + +G +L +
Sbjct: 258 KNLLVHGFVLDEGGQ 272
Score = 62.4 bits (152), Expect = 5e-10
Identities = 25/78 (32%), Positives = 46/78 (58%), Gaps = 4/78 (5%)
Query: 1203 HVYQLLGKDLIQNHLTFFIYIHTAIWGDEPEMWPRGIRANGHLLLN-SAKMSKSEGNFLT 1261
+ L+GKD+++ F+I + A++G E+ P+ + +G +L KMSKS+GN +
Sbjct: 227 ADWHLIGKDILRGWANFWITMLVALFG---EIPPKNLLVHGFVLDEGGQKMSKSKGNVID 283
Query: 1262 LTEAVKKFSADGMRLCLA 1279
++ V+K+ AD +R L
Sbjct: 284 PSDVVEKYGADALRYYLT 301
Score = 56.7 bits (137), Expect = 3e-08
Identities = 22/71 (30%), Positives = 41/71 (57%), Gaps = 4/71 (5%)
Query: 1007 SDLIQNHLTFFIYIHTAIWGDEPEMWPRGIRANGHLLLN-SAKMSKSEGNFLTLTEAVKK 1065
D+++ F+I + A++G E+ P+ + +G +L KMSKS+GN + ++ V+K
Sbjct: 234 KDILRGWANFWITMLVALFG---EIPPKNLLVHGFVLDEGGQKMSKSKGNVIDPSDVVEK 290
Query: 1066 FSADGMRLCLA 1076
+ AD +R L
Sbjct: 291 YGADALRYYLT 301
Score = 48.6 bits (116), Expect = 1e-05
Identities = 20/86 (23%), Positives = 33/86 (38%), Gaps = 5/86 (5%)
Query: 442 DECVVALCDQWYLDYGEPTWKAAAEQCLANMNTYHDEVRRNFGASLNWLHEYACSRTYGL 501
V + +QW+ D + +K + L + V+ A L L ++A SR
Sbjct: 132 GTHPVRITEQWFFDMPK--FKEKLLKALRRGKIVPEHVKNRMEAWLESLLDWAISRQRYW 189
Query: 502 GTKLPWDEQWLIESLSDSTIYMAYYT 527
GT LP + + + DS I
Sbjct: 190 GTPLP---EDVFDVWFDSGIGPLGSL 212
Score = 41.6 bits (98), Expect = 0.003
Identities = 25/106 (23%), Positives = 35/106 (33%), Gaps = 45/106 (42%)
Query: 44 KFFTTFPFPYMNGRLHLGHTFSLSKFREKIYEETVGDAVRSSPDDKFFTTFPFPYMNGRL 103
KF+ T P PY NG LHLGH + D
Sbjct: 1 KFYVTTPPPYANGSLHLGHA----------LTHIIAD----------------------- 27
Query: 104 HLGHTFSLSKCEFSVRFNRLKGKRVLFPFGFHCTGMPIKACADKLK 149
F R+ R++G V F G+ G+PI+ A++
Sbjct: 28 ------------FIARYKRMRGYEVPFLPGWDTHGLPIELKAERKG 61
>gnl|CDD|219767 pfam08264, Anticodon_1, Anticodon-binding domain of tRNA. This
domain is found mainly hydrophobic tRNA synthetases. The
domain binds to the anticodon of the tRNA.
Length = 148
Score = 64.7 bits (158), Expect = 6e-12
Identities = 35/124 (28%), Positives = 48/124 (38%), Gaps = 11/124 (8%)
Query: 1441 EMNLKIKETEDHYTKMLFKEALRTGFFELQAAR-DKYRELT--------AAEGGMHRTLV 1491
+N IKE + Y K F A + D Y EL+ +T++
Sbjct: 7 RLNKLIKEVTEAYEKYRFNTAASALYEFFWNDLSDWYLELSKDRLYGEAPDSDRSAQTVL 66
Query: 1492 LRFVEVQALLLCPVCPHVAEHVYQLLGKKGSIVKARWPEGGPI--DDILVRSSSYLMEAA 1549
+E LL P P + E ++Q LGKK SI A WPE + D+ L E
Sbjct: 67 YEVLETLLRLLAPFMPFITEELWQKLGKKESIHLAPWPEPDEVEEDEELEEEFELRQEIV 126
Query: 1550 HAFR 1553
A R
Sbjct: 127 QAIR 130
Score = 56.7 bits (137), Expect = 3e-09
Identities = 30/112 (26%), Positives = 42/112 (37%), Gaps = 18/112 (16%)
Query: 1126 DKVFLSEMNLKIKETEDHYTKMLFKEALRTGFFELQAAR-DKYRELT--------AAEGG 1176
D+ LS +N IKE + Y K F A + D Y EL+
Sbjct: 1 DRWILSRLNKLIKEVTEAYEKYRFNTAASALYEFFWNDLSDWYLELSKDRLYGEAPDSDR 60
Query: 1177 MHRTLVLRFVEVQALLLCPVCPHVAEHVYQLLGKDLIQNHLTFFIYIHTAIW 1228
+T++ +E LL P P + E ++Q LGK IH A W
Sbjct: 61 SAQTVLYEVLETLLRLLAPFMPFITEELWQKLGKK---------ESIHLAPW 103
Score = 49.7 bits (119), Expect = 8e-07
Identities = 25/97 (25%), Positives = 37/97 (38%), Gaps = 9/97 (9%)
Query: 1362 DKVFLSEMNLKIKETEDHYTKMLFKEALRTGFFELQAAR-DKYRELT--------AAEGG 1412
D+ LS +N IKE + Y K F A + D Y EL+
Sbjct: 1 DRWILSRLNKLIKEVTEAYEKYRFNTAASALYEFFWNDLSDWYLELSKDRLYGEAPDSDR 60
Query: 1413 MHRTLVLRFVEVQALLLCPVCPHVAEHVEMNLKIKET 1449
+T++ +E LL P P + E + L KE+
Sbjct: 61 SAQTVLYEVLETLLRLLAPFMPFITEELWQKLGKKES 97
>gnl|CDD|223221 COG0143, MetG, Methionyl-tRNA synthetase [Translation, ribosomal
structure and biogenesis].
Length = 558
Score = 67.7 bits (166), Expect = 3e-11
Identities = 60/227 (26%), Positives = 84/227 (37%), Gaps = 49/227 (21%)
Query: 1018 IYIHTAIWGDEPEMW-------PRGIRANGHLLLNSAKMSKSEGNFLTLTEAVKKFSADG 1070
I H W P M P I A+G L L KMSKS GN + E ++++ D
Sbjct: 299 IRFHAVYW---PAMLMAAGLPLPTRIFAHGFLTLEGQKMSKSRGNVVDPDELLEQYGVDA 355
Query: 1071 MRLCLADSGDSVEDANFVESMADAGILRLYTFIEWVKEILA---------TQSTLR---- 1117
+R LA D +F S D F+E V LA T +
Sbjct: 356 LRYYLARELPEGSDGDF--SWED--------FVERVNADLANKLGNLANRTLGFINKYFD 405
Query: 1118 -----TGSQDSFNDKVFLSEMNLKIKETEDHYTKMLFKEALRTGFFELQAARDKYRELT- 1171
G+ D D+ L+ ++ + K F++AL L + +KY +
Sbjct: 406 GVVPAAGAPDLEEDEELLALAREALEAVAEAMEKYEFRKALEE-IMALASRANKYIDEQA 464
Query: 1172 ----AAEGGMHRT-----LVLRFVEVQALLLCPVCPHVAEHVYQLLG 1209
A E R L L V V A+LL P P AE ++ LG
Sbjct: 465 PWKLAKEDKRERLATVLYLALELVRVLAILLYPFMPETAEKIWDQLG 511
Score = 65.0 bits (159), Expect = 2e-10
Identities = 69/281 (24%), Positives = 105/281 (37%), Gaps = 56/281 (19%)
Query: 1204 VYQLLGKDLIQNHLTFFIYIHTAIWGDEPEMW-------PRGIRANGHLLLNSAKMSKSE 1256
+ +GKD+I H W P M P I A+G L L KMSKS
Sbjct: 290 LVHFIGKDII--------RFHAVYW---PAMLMAAGLPLPTRIFAHGFLTLEGQKMSKSR 338
Query: 1257 GNFLTLTEAVKKFSADGMRLCLADSGDSVEDANFVESMADAAVKKFSADGMRLCLADS-G 1315
GN + E ++++ D +R LA D +F + V++ +AD LA+ G
Sbjct: 339 GNVVDPDELLEQYGVDALRYYLARELPEGSDGDFSW---EDFVERVNAD-----LANKLG 390
Query: 1316 DSVEDANFVESMADAGILRLYTFIEWVKEILATQSTLRTGSQDSFNDKVFLSEMNLKIKE 1375
N R FI K G+ D D+ L+ ++
Sbjct: 391 ------NLAN--------RTLGFIN--KYFDGVVPA--AGAPDLEEDEELLALAREALEA 432
Query: 1376 TEDHYTKMLFKEALRTGFFELQAARDKYRELT-----AAEGGMHRT-----LVLRFVEVQ 1425
+ K F++AL L + +KY + A E R L L V V
Sbjct: 433 VAEAMEKYEFRKALEE-IMALASRANKYIDEQAPWKLAKEDKRERLATVLYLALELVRVL 491
Query: 1426 ALLLCPVCPHVAEHVEMNLKIKETEDHYTKMLFKEALRTGF 1466
A+LL P P AE + L ++E ++T + ++ L G
Sbjct: 492 AILLYPFMPETAEKIWDQLGLEEDARNFTWLGARQPLLPGH 532
Score = 46.9 bits (112), Expect = 9e-05
Identities = 24/77 (31%), Positives = 31/77 (40%), Gaps = 7/77 (9%)
Query: 84 SSPDDKFFTTFPFPYMNGRLHLGHTFSLSKCEFSVRFNRLKGKRVLFPFGFHCTGMPIKA 143
K T PY NG HLGH ++ + R+ RL+G V F G G I+
Sbjct: 1 MKMMKKILVTTALPYPNGPPHLGHLYTYLAADVYARYLRLRGYEVFFLTGTDEHGTKIEL 60
Query: 144 CADKLKREMESFGFPPQ 160
A+K G PQ
Sbjct: 61 KAEKE-------GITPQ 70
Score = 33.0 bits (76), Expect = 1.4
Identities = 10/27 (37%), Positives = 12/27 (44%)
Query: 39 SSPDDKFFTTFPFPYMNGRLHLGHTFS 65
K T PY NG HLGH ++
Sbjct: 1 MKMMKKILVTTALPYPNGPPHLGHLYT 27
>gnl|CDD|220185 pfam09334, tRNA-synt_1g, tRNA synthetases class I (M). This family
includes methionyl tRNA synthetases.
Length = 388
Score = 61.1 bits (149), Expect = 2e-09
Identities = 25/93 (26%), Positives = 38/93 (40%), Gaps = 16/93 (17%)
Query: 1204 VYQLLGKDLIQNHLTFFIYIHTAIW------GDEPEMWPRGIRANGHLLLNSAKMSKSEG 1257
+ +GKD+I H W P P + A+G L + KMSKS G
Sbjct: 281 IVHFIGKDII--------RFHAIYWPAMLMAAGLPL--PTQVFAHGWLTVEGGKMSKSRG 330
Query: 1258 NFLTLTEAVKKFSADGMRLCLADSGDSVEDANF 1290
N + E + ++ D +R LA +D +F
Sbjct: 331 NVVDPDELLDRYGVDALRYYLAREAPEGKDGDF 363
Score = 56.1 bits (136), Expect = 7e-08
Identities = 22/76 (28%), Positives = 32/76 (42%), Gaps = 8/76 (10%)
Query: 1018 IYIHTAIW------GDEPEMWPRGIRANGHLLLNSAKMSKSEGNFLTLTEAVKKFSADGM 1071
I H W P P + A+G L + KMSKS GN + E + ++ D +
Sbjct: 290 IRFHAIYWPAMLMAAGLPL--PTQVFAHGWLTVEGGKMSKSRGNVVDPDELLDRYGVDAL 347
Query: 1072 RLCLADSGDSVEDANF 1087
R LA +D +F
Sbjct: 348 RYYLAREAPEGKDGDF 363
Score = 42.2 bits (100), Expect = 0.002
Identities = 24/76 (31%), Positives = 33/76 (43%), Gaps = 17/76 (22%)
Query: 90 FFTTFPFPYMNGRLHLGHTFSLSKCEFSVRFNRLKGKRVLFPFGFHCTGM-----PIKAC 144
F T PY+NG H+GH ++ + R+ RL+G VLF TG I+
Sbjct: 1 FLITTALPYVNGPPHIGHLYTTIPADVYARYLRLRGYDVLF-----VTGTDEHGTKIELA 55
Query: 145 ADKLKREMESFGFPPQ 160
A+K G PQ
Sbjct: 56 AEKE-------GVTPQ 64
Score = 31.4 bits (72), Expect = 4.2
Identities = 9/21 (42%), Positives = 13/21 (61%)
Query: 45 FFTTFPFPYMNGRLHLGHTFS 65
F T PY+NG H+GH ++
Sbjct: 1 FLITTALPYVNGPPHIGHLYT 21
>gnl|CDD|237029 PRK12268, PRK12268, methionyl-tRNA synthetase; Reviewed.
Length = 556
Score = 60.2 bits (147), Expect = 6e-09
Identities = 62/269 (23%), Positives = 107/269 (39%), Gaps = 63/269 (23%)
Query: 1205 YQLLGKDLIQNHLTFFIYIHTAIW-------GDEPEMWPRGIRANGHLLLNSAKMSKSEG 1257
Y +GKD N I H+ IW G+ ++ P I ++ +L L K SKS G
Sbjct: 290 YYFIGKD---N-----IPFHSIIWPAMLLGSGEPLKL-PDEIVSSEYLTLEGGKFSKSRG 340
Query: 1258 NFLTLTEAVKKFSADGMRLCLADSGDSVEDANFVESMADAAVKKFSADGMRLCLADS-GD 1316
+ + +A++++ D +R LA + D +F + V++ +++ LAD G
Sbjct: 341 WGIWVDDALERYPPDYLRYYLAANAPENSDTDFTW---EEFVRRVNSE-----LADKYG- 391
Query: 1317 SVEDANFVESMADAGILRLYTFIE-WVKEILATQSTLRTGSQDSFNDKVFLSEMNLKIKE 1375
N V R+ +FIE + I+ + D+ ++E KE
Sbjct: 392 -----NLVN--------RVLSFIEKYFGGIVP-------PGELGDEDRELIAEAEALFKE 431
Query: 1376 TEDHYTKMLFKEALRTGFFELQAARDKYRELTA-----------AEGGMHRTL-VLRFVE 1423
+ FK+AL EL +KY + A A ++ L ++R +
Sbjct: 432 VGELLEAGEFKKALEE-IMELAREANKYLDEKAPWKLAKTDRERAATVLYTALNLVRLL- 489
Query: 1424 VQALLLCPVCPHVAEHVEMNLKIKETEDH 1452
A+LL P P A+ + L + E
Sbjct: 490 --AVLLYPFLPFSAQKIWEMLGGENIEKL 516
Score = 59.1 bits (144), Expect = 1e-08
Identities = 55/231 (23%), Positives = 98/231 (42%), Gaps = 44/231 (19%)
Query: 1018 IYIHTAIW-------GDEPEMWPRGIRANGHLLLNSAKMSKSEGNFLTLTEAVKKFSADG 1070
I H+ IW G+ ++ P I ++ +L L K SKS G + + +A++++ D
Sbjct: 298 IPFHSIIWPAMLLGSGEPLKL-PDEIVSSEYLTLEGGKFSKSRGWGIWVDDALERYPPDY 356
Query: 1071 MRLCLADSGDSVEDANFVES---------MADA-GIL--RLYTFIE-WVKEILATQSTLR 1117
+R LA + D +F +AD G L R+ +FIE + I+
Sbjct: 357 LRYYLAANAPENSDTDFTWEEFVRRVNSELADKYGNLVNRVLSFIEKYFGGIVP------ 410
Query: 1118 TGSQDSFNDKVFLSEMNLKIKETEDHYTKMLFKEALRTGFFELQAARDKYRELTA----- 1172
+ D+ ++E KE + FK+AL EL +KY + A
Sbjct: 411 -PGELGDEDRELIAEAEALFKEVGELLEAGEFKKALEE-IMELAREANKYLDEKAPWKLA 468
Query: 1173 ------AEGGMHRTL-VLRFVEVQALLLCPVCPHVAEHVYQLLGKDLIQNH 1216
A ++ L ++R + A+LL P P A+ ++++LG + I+
Sbjct: 469 KTDRERAATVLYTALNLVRLL---AVLLYPFLPFSAQKIWEMLGGENIEKL 516
Score = 49.8 bits (120), Expect = 1e-05
Identities = 26/63 (41%), Positives = 30/63 (47%), Gaps = 3/63 (4%)
Query: 89 KFFTTFPFPYMNGRLHLGH--TFSLSKCEFSVRFNRLKGKRVLFPFGFHCTGMPIKACAD 146
+ T +PY NG LHLGH L F R+ RLKG VLF G G PI+ A
Sbjct: 4 RILITSAWPYANGPLHLGHLAGSGLPADVF-ARYQRLKGNEVLFVSGSDEHGTPIELAAK 62
Query: 147 KLK 149
K
Sbjct: 63 KEG 65
Score = 36.0 bits (84), Expect = 0.17
Identities = 26/100 (26%), Positives = 43/100 (43%), Gaps = 17/100 (17%)
Query: 1447 KETEDHYTKMLFKEALRTGFFELQAARDKYRELTA-----------AEGGMHRTL-VLRF 1494
KE + FK+AL EL +KY + A A ++ L ++R
Sbjct: 430 KEVGELLEAGEFKKALEE-IMELAREANKYLDEKAPWKLAKTDRERAATVLYTALNLVRL 488
Query: 1495 VEVQALLLCPVCPHVAEHVYQLLGKKGSIVKARWPEGGPI 1534
+ A+LL P P A+ ++++LG + I K W P+
Sbjct: 489 L---AVLLYPFLPFSAQKIWEMLGGEN-IEKLTWESLKPL 524
>gnl|CDD|173907 cd00814, MetRS_core, catalytic core domain of methioninyl-tRNA
synthetases. Methionine tRNA synthetase (MetRS)
catalytic core domain. This class I enzyme aminoacylates
the 2'-OH of the nucleotide at the 3' of the appropriate
tRNA. MetRS, which consists of the core domain and an
anti-codon binding domain, functions as a monomer.
However, in some species the anti-codon binding domain is
followed by an EMAP domain. In this case, MetRS functions
as a homodimer. The core domain is based on the Rossman
fold and is responsible for the ATP-dependent formation
of the enzyme bound aminoacyl-adenylate. It contains the
characteristic class I HIGH and KMSKS motifs, which are
involved in ATP binding. As a result of a deletion
event, MetRS has a significantly shorter core domain
insertion than IleRS, ValRS, and LeuR. Consequently, the
MetRS insertion lacks the editing function.
Length = 319
Score = 57.2 bits (139), Expect = 3e-08
Identities = 26/94 (27%), Positives = 42/94 (44%), Gaps = 18/94 (19%)
Query: 1204 VYQLLGKDLIQNHLTFFIYIHTAIWGDEPEMW-------PRGIRANGHLLLNSAKMSKSE 1256
+ +GKD+I H W P M P I A+G+L + KMSKS
Sbjct: 237 LVHFIGKDII--------RFHAIYW---PAMLLGAGLPLPTRIVAHGYLTVEGKKMSKSR 285
Query: 1257 GNFLTLTEAVKKFSADGMRLCLADSGDSVEDANF 1290
GN + + ++++ AD +R L +D++F
Sbjct: 286 GNVVDPDDLLERYGADALRYYLLRERPEGKDSDF 319
Score = 52.1 bits (126), Expect = 1e-06
Identities = 23/77 (29%), Positives = 36/77 (46%), Gaps = 10/77 (12%)
Query: 1018 IYIHTAIWGDEPEMW-------PRGIRANGHLLLNSAKMSKSEGNFLTLTEAVKKFSADG 1070
I H W P M P I A+G+L + KMSKS GN + + ++++ AD
Sbjct: 246 IRFHAIYW---PAMLLGAGLPLPTRIVAHGYLTVEGKKMSKSRGNVVDPDDLLERYGADA 302
Query: 1071 MRLCLADSGDSVEDANF 1087
+R L +D++F
Sbjct: 303 LRYYLLRERPEGKDSDF 319
Score = 43.7 bits (104), Expect = 6e-04
Identities = 24/72 (33%), Positives = 32/72 (44%), Gaps = 7/72 (9%)
Query: 89 KFFTTFPFPYMNGRLHLGHTFSLSKCEFSVRFNRLKGKRVLFPFGFHCTGMPIKACADKL 148
K T PY+NG HLGH + + R+ RL+G VLF G G I+ A++
Sbjct: 1 KVLITTALPYVNGVPHLGHLYGTVLADVFARYQRLRGYDVLFVTGTDEHGTKIEQKAEEE 60
Query: 149 KREMESFGFPPQ 160
G PQ
Sbjct: 61 -------GVTPQ 65
>gnl|CDD|237306 PRK13208, valS, valyl-tRNA synthetase; Reviewed.
Length = 800
Score = 57.9 bits (141), Expect = 4e-08
Identities = 19/47 (40%), Positives = 29/47 (61%)
Query: 95 PFPYMNGRLHLGHTFSLSKCEFSVRFNRLKGKRVLFPFGFHCTGMPI 141
P P ++G LH+GH FS + +F R+ R++G V FP G+ G+P
Sbjct: 45 PPPTVSGSLHIGHVFSYTHTDFIARYQRMRGYNVFFPQGWDDNGLPT 91
Score = 49.4 bits (119), Expect = 2e-05
Identities = 49/206 (23%), Positives = 77/206 (37%), Gaps = 39/206 (18%)
Query: 1048 KMSKSEGNFLTLTEAVKKFSADGMRLCLADS--GDSVEDANFVESMADAGILRLYTFIEW 1105
KMSKS+GN +T E ++K+ AD +R A + G D F E G RL T + W
Sbjct: 533 KMSKSKGNVVTPEELLEKYGADAVRYWAASARLGS---DTPFDEKQVKIG-RRLLTKL-W 587
Query: 1106 --VKEILATQSTLRTGSQDSFN--DKVFLSEMNLKIKETEDHYTKMLFKEALRT--GFF- 1158
+ +L + + D+ L+++ +++ + F +AL FF
Sbjct: 588 NASRFVLHFSADPEPDKAEVLEPLDRWILAKLAKVVEKATEALENYDFAKALEEIESFFW 647
Query: 1159 --------ELQAARDKYRELTAAEGGMHRT--LVLRFV-EVQALLLCPVCPHVAEHVYQL 1207
EL K R E ++ L V + LL P P + E V+
Sbjct: 648 HVFCDDYLELV----KSRAYGEDEEEEQKSARYTLYTVLDTLLRLLAPFLPFITEEVWSW 703
Query: 1208 LGKDLIQNHLTFFIYIHTAIWGDEPE 1233
L +H A W + E
Sbjct: 704 LYGG----------SVHRASWPEPDE 719
Score = 40.9 bits (97), Expect = 0.006
Identities = 20/65 (30%), Positives = 26/65 (40%), Gaps = 4/65 (6%)
Query: 1492 LRFV-EVQALLLCPVCPHVAEHVYQLLGKKGSIVKARWPE--GGPIDDILVRSSSYLMEA 1548
L V + LL P P + E V+ L GS+ +A WPE ID+ E
Sbjct: 678 LYTVLDTLLRLLAPFLPFITEEVWSWL-YGGSVHRASWPEPDEELIDEEDEELGELAKEI 736
Query: 1549 AHAFR 1553
A R
Sbjct: 737 LSAVR 741
Score = 38.6 bits (91), Expect = 0.034
Identities = 14/31 (45%), Positives = 21/31 (67%)
Query: 1251 KMSKSEGNFLTLTEAVKKFSADGMRLCLADS 1281
KMSKS+GN +T E ++K+ AD +R A +
Sbjct: 533 KMSKSKGNVVTPEELLEKYGADAVRYWAASA 563
>gnl|CDD|232969 TIGR00422, valS, valyl-tRNA synthetase. The valyl-tRNA synthetase
(ValS) is a class I amino acyl-tRNA ligase and is
particularly closely related to the isoleucyl tRNA
synthetase [Protein synthesis, tRNA aminoacylation].
Length = 861
Score = 56.6 bits (137), Expect = 9e-08
Identities = 16/46 (34%), Positives = 24/46 (52%)
Query: 95 PFPYMNGRLHLGHTFSLSKCEFSVRFNRLKGKRVLFPFGFHCTGMP 140
P P + G LH+GH + S + R+ R+KG VL+ G G+
Sbjct: 40 PPPNVTGSLHIGHALNWSIQDIIARYKRMKGYNVLWLPGTDHAGIA 85
Score = 47.0 bits (112), Expect = 1e-04
Identities = 43/177 (24%), Positives = 73/177 (41%), Gaps = 13/177 (7%)
Query: 1048 KMSKSEGNFLTLTEAVKKFSADGMRLCLADSGDSVEDANFVESMADAG---ILRLYTFIE 1104
KMSKS GN + + ++K+ AD +R LA +D NF ++ + +L+
Sbjct: 525 KMSKSLGNVIDPLDVIEKYGADALRFTLASLVTPGDDINFDWKRVESARNFLNKLWNASR 584
Query: 1105 WVKEILATQSTLRTGSQD-SFNDKVFLSEMNLKIKETEDHYTKMLFKEA---LRTGFFE- 1159
+V L+ L G + S D+ LS++N IKE K F EA L +
Sbjct: 585 FVLMNLSDDLELSGGEEKLSLADRWILSKLNRTIKEVRKALDKYRFAEAAKALYEFIWND 644
Query: 1160 -----LQAARDKYRELTAAEGGMHRTLVLRFVEVQALLLCPVCPHVAEHVYQLLGKD 1211
++ + + AE R + ++ LL P P + E ++Q +
Sbjct: 645 FCDWYIELVKYRLYNGNEAEKKAARDTLYYVLDKALRLLHPFMPFITEEIWQHFKEG 701
Score = 42.0 bits (99), Expect = 0.003
Identities = 33/122 (27%), Positives = 52/122 (42%), Gaps = 14/122 (11%)
Query: 232 VQDLRSIGIHVDWRRTFITTDSNPFFDSFVRWQFMRLRDRHKIKYGKRYTVFSPRDNQPC 291
++ +G +DW R T D V+ F+RL ++ I G+ + P+ N
Sbjct: 125 KNQIKRLGASLDWSRERFTMD--EGLSKAVKEAFVRLYEKGLIYRGEYLVNWDPKLNTAI 182
Query: 292 MDHDRASGEGVGPQEYTLIKMRLVKPYPAKLCCLDSKPVFLVAATLRPETMYGQTNAWVR 351
D + E G K+ ++ YP + +LV AT RPETM+G T V
Sbjct: 183 SDIEVEYKEVKG-------KLYYIR-YPLA----NGSKDYLVVATTRPETMFGDTAVAVH 230
Query: 352 PD 353
P+
Sbjct: 231 PE 232
Score = 38.5 bits (90), Expect = 0.033
Identities = 50/231 (21%), Positives = 76/231 (32%), Gaps = 48/231 (20%)
Query: 1251 KMSKSEGNFLTLTEAVKKFSADGMRLCLADSGDSVEDANF----VESMADAAVKKFSADG 1306
KMSKS GN + + ++K+ AD +R LA +D NF VES + K ++A
Sbjct: 525 KMSKSLGNVIDPLDVIEKYGADALRFTLASLVTPGDDINFDWKRVESARNFLNKLWNASR 584
Query: 1307 MRLCLADSGDSVEDANFVESMADAGILRLYTFIEWVKEILATQSTLRTGSQDSFNDKVFL 1366
L + S+AD W+ L
Sbjct: 585 FVLMNLSDDLELSGGEEKLSLAD----------RWI-----------------------L 611
Query: 1367 SEMNLKIKETEDHYTKMLFKEA---LRTGFFE------LQAARDKYRELTAAEGGMHRTL 1417
S++N IKE K F EA L + ++ + + AE R
Sbjct: 612 SKLNRTIKEVRKALDKYRFAEAAKALYEFIWNDFCDWYIELVKYRLYNGNEAEKKAARDT 671
Query: 1418 VLRFVEVQALLLCPVCPHVAEHVEMNLKIKETEDHYTKMLFKEALRTGFFE 1468
+ ++ LL P P + E E+ KE D + E
Sbjct: 672 LYYVLDKALRLLHPFMPFITE--EIWQHFKEGADSIMLQSYPVVDAEFVDE 720
Score = 37.7 bits (88), Expect = 0.054
Identities = 15/59 (25%), Positives = 24/59 (40%), Gaps = 3/59 (5%)
Query: 1475 KYR--ELTAAEGGMHRTLVLRFVEVQALLLCPVCPHVAEHVYQLLGKKG-SIVKARWPE 1530
KYR AE R + ++ LL P P + E ++Q + SI+ +P
Sbjct: 654 KYRLYNGNEAEKKAARDTLYYVLDKALRLLHPFMPFITEEIWQHFKEGADSIMLQSYPV 712
Score = 32.0 bits (73), Expect = 3.3
Identities = 15/35 (42%), Positives = 19/35 (54%)
Query: 356 YIALSCLDSKPVFLVAATLRPETMYGQTNAWVRPD 390
YI + +LV AT RPETM+G T V P+
Sbjct: 198 YIRYPLANGSKDYLVVATTRPETMFGDTAVAVHPE 232
>gnl|CDD|232957 TIGR00398, metG, methionyl-tRNA synthetase. The methionyl-tRNA
synthetase (metG) is a class I amino acyl-tRNA ligase.
This model appears to recognize the methionyl-tRNA
synthetase of every species, including eukaryotic
cytosolic and mitochondrial forms. The UPGMA difference
tree calculated after search and alignment according to
This model shows an unusual deep split between two
families of MetG. One family contains forms from the
Archaea, yeast cytosol, spirochetes, and E. coli, among
others. The other family includes forms from yeast
mitochondrion, Synechocystis sp., Bacillus subtilis, the
Mycoplasmas, Aquifex aeolicus, and Helicobacter pylori.
The E. coli enzyme is homodimeric, although monomeric
forms can be prepared that are fully active. Activity of
this enzyme in bacteria includes aminoacylation of
fMet-tRNA with Met; subsequent formylation of the Met to
fMet is catalyzed by a separate enzyme. Note that the
protein from Aquifex aeolicus is split into an alpha
(large) and beta (small) subunit; this model does not
include the C-terminal region corresponding to the beta
chain [Protein synthesis, tRNA aminoacylation].
Length = 530
Score = 56.2 bits (136), Expect = 1e-07
Identities = 48/222 (21%), Positives = 85/222 (38%), Gaps = 36/222 (16%)
Query: 1018 IYIHTAIWGDEPEMW-------PRGIRANGHLLLNSAKMSKSEGNFLTLTEAVKKFSADG 1070
+ HT W P M P + ++G+L + KMSKS GN + ++ + +F AD
Sbjct: 293 VRFHTIYW---PAMLMGLGLPLPTQVFSHGYLTVEGGKMSKSLGNVVDPSDLLARFGADI 349
Query: 1071 MRLCLADSGDSVEDANFVES----------MADAGIL--RLYTFIEWVKEILATQSTLRT 1118
+R L +D +F G L R FI K+ L +
Sbjct: 350 LRYYLLKERPLGKDGDFSWEDFVERVNADLANKLGNLLNRTLGFI---KKYFNGV--LPS 404
Query: 1119 GSQDSFNDKVFLSEMNLKIKETEDHYTKMLFKEALRTGFFELQAARDKY--------REL 1170
DK L +N +++ ++ F++ALR +L +KY
Sbjct: 405 EDITDEEDKKLLKLINEALEQIDEAIESFEFRKALRE-IMKLADRGNKYIDENKPWELFK 463
Query: 1171 TAAEGGMHRTLVLRFVEVQALLLCPVCPHVAEHVYQLLGKDL 1212
+ + + V ++LL P+ P ++E + + L +L
Sbjct: 464 QSPRLKELLAVCSMLIRVLSILLYPIMPKLSEKILKFLNFEL 505
Score = 54.7 bits (132), Expect = 3e-07
Identities = 59/276 (21%), Positives = 105/276 (38%), Gaps = 55/276 (19%)
Query: 1204 VYQLLGKDLIQNHLTFFIYIHTAIWGDEPEMW-------PRGIRANGHLLLNSAKMSKSE 1256
+ +GKD++ HT W P M P + ++G+L + KMSKS
Sbjct: 284 LIHFIGKDIV--------RFHTIYW---PAMLMGLGLPLPTQVFSHGYLTVEGGKMSKSL 332
Query: 1257 GNFLTLTEAVKKFSADGMRLCLADSGDSVEDANFVESMADAAVKKFSADGMRLCLADS-G 1315
GN + ++ + +F AD +R L +D +F + V++ +AD LA+ G
Sbjct: 333 GNVVDPSDLLARFGADILRYYLLKERPLGKDGDF---SWEDFVERVNAD-----LANKLG 384
Query: 1316 DSVEDANFVESMADAGILRLYTFIEWVKEILATQSTLRTGSQDSFNDKVFLSEMNLKIKE 1375
N + R FI K+ L + DK L +N +++
Sbjct: 385 ------NLLN--------RTLGFI---KKYFNGV--LPSEDITDEEDKKLLKLINEALEQ 425
Query: 1376 TEDHYTKMLFKEALRTGFFELQAARDKY--------RELTAAEGGMHRTLVLRFVEVQAL 1427
++ F++ALR +L +KY + + + V ++
Sbjct: 426 IDEAIESFEFRKALRE-IMKLADRGNKYIDENKPWELFKQSPRLKELLAVCSMLIRVLSI 484
Query: 1428 LLCPVCPHVAEHVEMNLKIKETEDHYTKMLFKEALR 1463
LL P+ P ++E + L + D K+L L
Sbjct: 485 LLYPIMPKLSEKILKFLNFELEWDFKLKLLEGHKLN 520
Score = 43.9 bits (104), Expect = 6e-04
Identities = 20/59 (33%), Positives = 29/59 (49%)
Query: 90 FFTTFPFPYMNGRLHLGHTFSLSKCEFSVRFNRLKGKRVLFPFGFHCTGMPIKACADKL 148
T PY NG+ HLGH ++ + R+ RL+G VLF G G I+ A++
Sbjct: 1 ILITTALPYANGKPHLGHAYTTILADVYARYKRLRGYEVLFVCGTDEHGTKIELKAEQE 59
Score = 30.8 bits (70), Expect = 6.4
Identities = 9/21 (42%), Positives = 12/21 (57%)
Query: 45 FFTTFPFPYMNGRLHLGHTFS 65
T PY NG+ HLGH ++
Sbjct: 1 ILITTALPYANGKPHLGHAYT 21
>gnl|CDD|185677 cd00817, ValRS_core, catalytic core domain of valyl-tRNA
synthetases. Valine amino-acyl tRNA synthetase (ValRS)
catalytic core domain. This enzyme is a monomer which
aminoacylates the 2'-OH of the nucleotide at the 3' of
the appropriate tRNA. The core domain is based on the
Rossman fold and is responsible for the ATP-dependent
formation of the enzyme bound aminoacyl-adenylate. It
contains the characteristic class I HIGH and KMSKS
motifs, which are involved in ATP binding. ValRS has an
insertion in the core domain, which is subject to both
deletions and rearrangements. This editing region
hydrolyzes mischarged cognate tRNAs and thus prevents
the incorporation of chemically similar amino acids.
Length = 382
Score = 54.6 bits (132), Expect = 3e-07
Identities = 16/46 (34%), Positives = 25/46 (54%)
Query: 95 PFPYMNGRLHLGHTFSLSKCEFSVRFNRLKGKRVLFPFGFHCTGMP 140
P P + G LH+GH + + + R+ R+KG VL+P G G+
Sbjct: 8 PPPNVTGSLHMGHALNNTIQDIIARYKRMKGYNVLWPPGTDHAGIA 53
Score = 36.8 bits (86), Expect = 0.075
Identities = 14/40 (35%), Positives = 20/40 (50%)
Query: 1048 KMSKSEGNFLTLTEAVKKFSADGMRLCLADSGDSVEDANF 1087
KMSKS GN + + + + AD +R LA + D N
Sbjct: 343 KMSKSLGNVIDPLDVIDGYGADALRFTLASAATQGRDINL 382
Score = 36.8 bits (86), Expect = 0.075
Identities = 14/40 (35%), Positives = 20/40 (50%)
Query: 1251 KMSKSEGNFLTLTEAVKKFSADGMRLCLADSGDSVEDANF 1290
KMSKS GN + + + + AD +R LA + D N
Sbjct: 343 KMSKSLGNVIDPLDVIDGYGADALRFTLASAATQGRDINL 382
>gnl|CDD|234655 PRK00133, metG, methionyl-tRNA synthetase; Reviewed.
Length = 673
Score = 54.8 bits (133), Expect = 3e-07
Identities = 29/95 (30%), Positives = 44/95 (46%), Gaps = 19/95 (20%)
Query: 1204 VYQLLGKDLIQNHLTFFIYIHTAIWGDEPEM-----W--PRGIRANGHLLLNSAKMSKSE 1256
+Y +GKD+I Y HT W P M + P + A+G L + AKMSKS
Sbjct: 286 LYHFIGKDII--------YFHTLFW---PAMLEGAGYRLPTNVFAHGFLTVEGAKMSKSR 334
Query: 1257 GNFLTLTEAVKKFSADGMRLCLA-DSGDSVEDANF 1290
G F+ + D +R LA ++++D +F
Sbjct: 335 GTFIWARTYLDHLDPDYLRYYLAAKLPETIDDLDF 369
Score = 52.8 bits (128), Expect = 1e-06
Identities = 52/227 (22%), Positives = 77/227 (33%), Gaps = 54/227 (23%)
Query: 1018 IYIHTAIWGDEPEM-----W--PRGIRANGHLLLNSAKMSKSEGNFLTLTEAVKKFSADG 1070
IY HT W P M + P + A+G L + AKMSKS G F+ + D
Sbjct: 295 IYFHTLFW---PAMLEGAGYRLPTNVFAHGFLTVEGAKMSKSRGTFIWARTYLDHLDPDY 351
Query: 1071 MRLCLA-DSGDSVEDANFVESMAD---------AGIL-----RLYTFIEWVKEILATQST 1115
+R LA ++++D +F + D G + R FI
Sbjct: 352 LRYYLAAKLPETIDDLDF--NWEDFQQRVNSELVGKVVNFASRTAGFI---------NKR 400
Query: 1116 LRTGSQDSFNDKVFLSEMNLKIKETEDHYTKMLFKEALRT---------GFFELQA---- 1162
D+ D L E ++ + Y F++ALR + +
Sbjct: 401 FDGKLPDALADPELLEEFEAAAEKIAEAYEAREFRKALREIMALADFANKYVDDNEPWKL 460
Query: 1163 ARDKYRELTAAEGGMHRTLVLRFVEVQALLLCPVCPHVAEHVYQLLG 1209
A+ L A L L A+ L PV P +AE L
Sbjct: 461 AKQDGERLQAV---CSVGLNL--FRALAIYLKPVLPELAERAEAFLN 502
Score = 34.7 bits (81), Expect = 0.50
Identities = 15/42 (35%), Positives = 20/42 (47%), Gaps = 16/42 (38%)
Query: 97 PYMNGRLHLGH--------TFSLSKCEFSVRFNRLKGKRVLF 130
PY NG +HLGH + VR+ R++G VLF
Sbjct: 11 PYANGPIHLGHLVEYIQADIW--------VRYQRMRGHEVLF 44
>gnl|CDD|234705 PRK00260, cysS, cysteinyl-tRNA synthetase; Validated.
Length = 463
Score = 53.6 bits (130), Expect = 6e-07
Identities = 22/75 (29%), Positives = 36/75 (48%), Gaps = 16/75 (21%)
Query: 1039 NGHLLLNSAKMSKSEGNFLTLTEAVKKFSADGMRLCLA--------D-SGDSVEDANFVE 1089
NG + +N KMSKS GNF T+ + +KK+ + +R L + S +++E A
Sbjct: 257 NGFVTVNGEKMSKSLGNFFTIRDLLKKYDPEVLRFFLLSAHYRSPLNFSEEALEQAK--- 313
Query: 1090 SMADAGILRLYTFIE 1104
+ RLY +
Sbjct: 314 ----KALERLYNALA 324
Score = 50.9 bits (123), Expect = 4e-06
Identities = 16/37 (43%), Positives = 24/37 (64%)
Query: 1242 NGHLLLNSAKMSKSEGNFLTLTEAVKKFSADGMRLCL 1278
NG + +N KMSKS GNF T+ + +KK+ + +R L
Sbjct: 257 NGFVTVNGEKMSKSLGNFFTIRDLLKKYDPEVLRFFL 293
>gnl|CDD|240402 PTZ00399, PTZ00399, cysteinyl-tRNA-synthetase; Provisional.
Length = 651
Score = 53.9 bits (130), Expect = 7e-07
Identities = 25/75 (33%), Positives = 37/75 (49%), Gaps = 6/75 (8%)
Query: 1040 GHLLLNSAKMSKSEGNFLTLTEAVKKFSADGMR-LCLADSGDSVEDANFVESMADAGILR 1098
GHL + KMSKS NF+T+ +A+ K++A +R L L D N+ + D I +
Sbjct: 307 GHLHIKGLKMSKSLKNFITIRQALSKYTARQIRLLFLLHKWDKP--MNYSDESMDEAIEK 364
Query: 1099 LYTFIEW---VKEIL 1110
F + VK L
Sbjct: 365 DKVFFNFFANVKIKL 379
Score = 53.1 bits (128), Expect = 1e-06
Identities = 22/60 (36%), Positives = 34/60 (56%), Gaps = 3/60 (5%)
Query: 1243 GHLLLNSAKMSKSEGNFLTLTEAVKKFSADGMR-LCLADSGDSVEDANFVESMADAAVKK 1301
GHL + KMSKS NF+T+ +A+ K++A +R L L D N+ + D A++K
Sbjct: 307 GHLHIKGLKMSKSLKNFITIRQALSKYTARQIRLLFLLHKWDKP--MNYSDESMDEAIEK 364
>gnl|CDD|223599 COG0525, ValS, Valyl-tRNA synthetase [Translation, ribosomal
structure and biogenesis].
Length = 877
Score = 53.8 bits (130), Expect = 8e-07
Identities = 16/53 (30%), Positives = 26/53 (49%)
Query: 88 DKFFTTFPFPYMNGRLHLGHTFSLSKCEFSVRFNRLKGKRVLFPFGFHCTGMP 140
F P P + G LH+GH + + + R+ R++G VL+P G G+
Sbjct: 33 PPFSIDTPPPNVTGSLHMGHALNYTLQDILARYKRMRGYNVLWPPGTDHAGIA 85
Score = 51.9 bits (125), Expect = 3e-06
Identities = 43/175 (24%), Positives = 62/175 (35%), Gaps = 16/175 (9%)
Query: 1048 KMSKSEGNFLTLTEAVKKFSADGMRLCLADSGDSVEDANFVESMADAG------ILRLYT 1101
KMSKS+GN + + + K+ AD +R LA D NF E + +
Sbjct: 525 KMSKSKGNVIDPLDVIDKYGADALRFTLASLASPGRDINFDEKRVEGYRNFLNKLWNATR 584
Query: 1102 FIEWVKEILATQSTLRTGSQDSFNDKVFLSEMNLKIKETEDHYTKMLFKEALRT--GFFE 1159
F+ + L + D+ LS +N +KE + F EA R F
Sbjct: 585 FVLMNLDDLGPDDLDLLALSLA--DRWILSRLNETVKEVTEALDNYRFDEAARALYEFIW 642
Query: 1160 LQAARD-----KYRELTAAEGGMHRTLVLRFVEVQAL-LLCPVCPHVAEHVYQLL 1208
K R E L +V L LL P P + E ++Q L
Sbjct: 643 NDFCDWYLELAKPRLYGGEEEKRAARATLYYVLDTLLRLLHPFMPFITEEIWQKL 697
Score = 43.4 bits (103), Expect = 0.001
Identities = 51/208 (24%), Positives = 69/208 (33%), Gaps = 39/208 (18%)
Query: 1251 KMSKSEGNFLTLTEAVKKFSADGMRLCLADSGDSVEDANFVESMADAAVKKFSADGMRLC 1310
KMSKS+GN + + + K+ AD +R LA D NF E + + F +L
Sbjct: 525 KMSKSKGNVIDPLDVIDKYGADALRFTLASLASPGRDINFDEKRVEGY-RNF---LNKLW 580
Query: 1311 LADSGDSVEDANFVESMADAGILRLYTFIEWVKEILATQSTLRTGSQDSFNDKVFLSEMN 1370
A FV D + L S D+ LS +N
Sbjct: 581 NA--------TRFVLMNLDD-----LGPDDLDLLAL------------SLADRWILSRLN 615
Query: 1371 LKIKETEDHYTKMLFKEALRT--GFFELQAARD-----KYRELTAAEGGMHRTLVLRFVE 1423
+KE + F EA R F K R E L +V
Sbjct: 616 ETVKEVTEALDNYRFDEAARALYEFIWNDFCDWYLELAKPRLYGGEEEKRAARATLYYVL 675
Query: 1424 VQAL-LLCPVCPHVAEHVEMNLKIKETE 1450
L LL P P + E E+ K+ TE
Sbjct: 676 DTLLRLLHPFMPFITE--EIWQKLPGTE 701
Score = 41.8 bits (99), Expect = 0.004
Identities = 26/93 (27%), Positives = 32/93 (34%), Gaps = 8/93 (8%)
Query: 1446 IKETEDHYTKMLFKEALRT--GFFELQAARD-----KYRELTAAEGGMHRTLVLRFVEVQ 1498
+KE + F EA R F K R E L +V
Sbjct: 618 VKEVTEALDNYRFDEAARALYEFIWNDFCDWYLELAKPRLYGGEEEKRAARATLYYVLDT 677
Query: 1499 AL-LLCPVCPHVAEHVYQLLGKKGSIVKARWPE 1530
L LL P P + E ++Q L SI A WPE
Sbjct: 678 LLRLLHPFMPFITEEIWQKLPGTESIHLASWPE 710
Score = 34.9 bits (81), Expect = 0.47
Identities = 39/122 (31%), Positives = 54/122 (44%), Gaps = 15/122 (12%)
Query: 232 VQDLRSIGIHVDWRRTFITTDSNPFFDSFVRWQFMRLRDRHKIKYGKRYTVFSPRDNQPC 291
+ LR +G+ VDW R T D P V+ F+RL ++ I G+R + P+
Sbjct: 125 REQLRRLGVSVDWSRERFTMD--PGLSRAVQEAFVRLYEKGLIYRGERLVNWCPKCRTAI 182
Query: 292 MDHDRASGEGVGPQEYTLIKMRLVKPYPAKLCCLDSKPVFLVAATLRPETMYGQTNAWVR 351
D + E G K+ +K YP L +LV AT RPET+ G T V
Sbjct: 183 SDIEVEYKEVEG-------KLYYIK-YP-----LADGDGYLVVATTRPETLLGDTAVAVH 229
Query: 352 PD 353
PD
Sbjct: 230 PD 231
>gnl|CDD|234743 PRK00390, leuS, leucyl-tRNA synthetase; Validated.
Length = 805
Score = 53.5 bits (130), Expect = 1e-06
Identities = 19/53 (35%), Positives = 29/53 (54%)
Query: 1478 ELTAAEGGMHRTLVLRFVEVQALLLCPVCPHVAEHVYQLLGKKGSIVKARWPE 1530
L AE + ++ +E+ LL P PH+AE +++ LG +GSI A WP
Sbjct: 682 ALYKAEDEQDKAVLREALEILVRLLAPFAPHLAEELWEKLGHEGSIANAPWPT 734
Score = 53.2 bits (129), Expect = 1e-06
Identities = 34/160 (21%), Positives = 58/160 (36%), Gaps = 66/160 (41%)
Query: 13 QKIEKEVQEEWDREKIYEETVGDAVRSSPDDKFFTTFPFPYMNGRLHLGHTFSLSKFREK 72
++IEK+ Q+ W+ K ++ K++ FPY +G LH+GH +
Sbjct: 8 KEIEKKWQKYWEENKTFK------TTEDSSKKYYVLDMFPYPSGGLHMGHVRN------- 54
Query: 73 IYEETVGDAVRSSPDDKFFTTFPFPYMNGRLHLGHTFSLSKCEFSVRFNRLKGKRVLFPF 132
Y T+GD + R+ R++G VL P
Sbjct: 55 -Y--TIGDVI-----------------------------------ARYKRMQGYNVLHPM 76
Query: 133 GFHCTGMP-----IK----------ACADKLKREMESFGF 157
G+ G+P IK +K++++S GF
Sbjct: 77 GWDAFGLPAENAAIKTGTHPAEWTYENIANMKKQLKSLGF 116
Score = 52.8 bits (128), Expect = 1e-06
Identities = 39/180 (21%), Positives = 70/180 (38%), Gaps = 41/180 (22%)
Query: 1048 KMSKSEGNFLTLTEAVKKFSADGMRLCLADSGDSVEDANFVESMA---------DAGI-- 1096
KMSKS+GN + + ++K+ AD RL F D+G+
Sbjct: 570 KMSKSKGNVVDPDDIIEKYGADTARL-------------FEMFAGPPEKDLEWSDSGVEG 616
Query: 1097 ----L-RLYTFIEWVKEILATQSTLRTGSQDSFNDKVFLSEMNLKIKETEDHYTKMLFKE 1151
L R++ + + L + DK +++ IK+ + ++ F
Sbjct: 617 AYRFLQRVWRLVV---DAKGEAGALDVAALSE--DKELRRKLHKTIKKVTEDIERLRFNT 671
Query: 1152 ALRTGFFELQAARDKYRELTAAEGGMHRTLVLRFVEVQALLLCPVCPHVAEHVYQLLGKD 1211
A+ EL L AE + ++ +E+ LL P PH+AE +++ LG +
Sbjct: 672 AIAA-LMEL------VNALYKAEDEQDKAVLREALEILVRLLAPFAPHLAEELWEKLGHE 724
Score = 40.8 bits (97), Expect = 0.007
Identities = 40/190 (21%), Positives = 69/190 (36%), Gaps = 46/190 (24%)
Query: 1251 KMSKSEGNFLTLTEAVKKFSADGMRLCLADSGDSVEDANFVESMADA-AVKKFSADGMRL 1309
KMSKS+GN + + ++K+ AD RL F ++S G
Sbjct: 570 KMSKSKGNVVDPDDIIEKYGADTARL-------------FEMFAGPPEKDLEWSDSG--- 613
Query: 1310 CLADSGDSVEDAN-FVESMADAGILRLYTFIEWVKEILATQSTLRTGSQDSFNDKVFLSE 1368
VE A F++ R++ + + L + DK +
Sbjct: 614 --------VEGAYRFLQ--------RVWRLVV---DAKGEAGALDVAALSE--DKELRRK 652
Query: 1369 MNLKIKETEDHYTKMLFKEALRTGFFELQAARDKYRELTAAEGGMHRTLVLRFVEVQALL 1428
++ IK+ + ++ F A+ EL L AE + ++ +E+ L
Sbjct: 653 LHKTIKKVTEDIERLRFNTAIAA-LMEL------VNALYKAEDEQDKAVLREALEILVRL 705
Query: 1429 LCPVCPHVAE 1438
L P PH+AE
Sbjct: 706 LAPFAPHLAE 715
Score = 31.6 bits (73), Expect = 4.7
Identities = 11/37 (29%), Positives = 17/37 (45%), Gaps = 8/37 (21%)
Query: 235 LRSIGIHVDWRRTFITTDSNPFFDSFVRWQ---FMRL 268
L+S+G DW R T D + +W F++L
Sbjct: 111 LKSLGFSYDWSREIATCDPE-----YYKWTQWIFLKL 142
>gnl|CDD|223293 COG0215, CysS, Cysteinyl-tRNA synthetase [Translation, ribosomal
structure and biogenesis].
Length = 464
Score = 51.5 bits (124), Expect = 3e-06
Identities = 24/69 (34%), Positives = 38/69 (55%), Gaps = 4/69 (5%)
Query: 1039 NGHLLLNSAKMSKSEGNFLTLTEAVKKFSADGMRLCLADSGDSVEDANF-VESMADA--G 1095
NG L ++ KMSKS GNF+T+ + +KK+ + +RL L S +F E + +A
Sbjct: 259 NGFLNIDGEKMSKSLGNFITVRDLLKKYDPEVLRLFLL-SSHYRSPLDFSEELLEEAKKA 317
Query: 1096 ILRLYTFIE 1104
+ RLY +
Sbjct: 318 LERLYNALR 326
Score = 48.8 bits (117), Expect = 2e-05
Identities = 34/118 (28%), Positives = 58/118 (49%), Gaps = 19/118 (16%)
Query: 1242 NGHLLLNSAKMSKSEGNFLTLTEAVKKFSADGMRLCLADSGDSVEDANF-VESMADA--A 1298
NG L ++ KMSKS GNF+T+ + +KK+ + +RL L S +F E + +A A
Sbjct: 259 NGFLNIDGEKMSKSLGNFITVRDLLKKYDPEVLRLFLL-SSHYRSPLDFSEELLEEAKKA 317
Query: 1299 VKKFSADGMRLCLADSGDSVE------DANFVESMAD-----AGILRLYTFIEWVKEI 1345
+++ + +R +GD+ +A F E++ D + L+ E KEI
Sbjct: 318 LERL-YNALRRLRDLAGDAELADLKEFEARFREALDDDFNTPKALAVLF---ELAKEI 371
>gnl|CDD|232956 TIGR00396, leuS_bact, leucyl-tRNA synthetase, eubacterial and
mitochondrial family. The leucyl-tRNA synthetases
belong to two families so broadly different that they
are represented by separate models. This model includes
both eubacterial and mitochondrial leucyl-tRNA
synthetases. It generates higher scores for some
valyl-tRNA synthetases than for any archaeal or
eukaryotic cytosolic leucyl-tRNA synthetase. Note that
the enzyme from Aquifex aeolicus is split into alpha and
beta chains; neither chain is long enough to score above
the trusted cutoff, but the alpha chain scores well
above the noise cutoff. The beta chain must be found by
a model and search designed for partial length matches
[Protein synthesis, tRNA aminoacylation].
Length = 842
Score = 50.9 bits (122), Expect = 6e-06
Identities = 22/77 (28%), Positives = 38/77 (49%), Gaps = 15/77 (19%)
Query: 96 FPYMNGRLHLGHTFSLSKCEFSVRFNRLKGKRVLFPFGFHCTGMPIKACA---------- 145
FPY +G LH+GH + + + R+ R+KG VL P G+ G+P + A
Sbjct: 37 FPYPSGALHMGHVRNYTITDVLSRYYRMKGYNVLHPIGWDAFGLPAENAAIKRGIHPAKW 96
Query: 146 -----DKLKREMESFGF 157
+K+++++ GF
Sbjct: 97 TYENIANMKKQLQALGF 113
Score = 46.3 bits (110), Expect = 1e-04
Identities = 40/181 (22%), Positives = 74/181 (40%), Gaps = 17/181 (9%)
Query: 1034 RGIRANGHLLLNS-AKMSKSEGNFLTLTEAVKKFSADGMRLCLADSGDSVEDANFVESMA 1092
+A G L+ KMSKS+GN + E V+ + AD +RL + G + ES
Sbjct: 590 GKDKAGGELVYVGYEKMSKSKGNGIDPQEIVESYGADALRLFIMFMGPIAASLEWNESGL 649
Query: 1093 DAG---ILRLYTFIEWVKEILATQSTLRTGSQD-SFNDKVFLSEMNLKIKETEDHYTKML 1148
+ + R++ V EI K +++ +K+ + K
Sbjct: 650 EGARRFLDRVWNL---VYEITGELDAASLTVTALEEAQKELRRDVHKFLKKVTEDLEK-- 704
Query: 1149 FKEALRTGFFELQAARDKYRELTAAEGGMHRTLVLRFVEVQALLLCPVCPHVAEHVYQLL 1208
+E+ T + + +L A+ L+L +++ +L P PH+AE +++ L
Sbjct: 705 -RESFNTAISAMMELLN---KLYKAK---KEALMLEYLKGFVTVLSPFAPHLAEELWEKL 757
Query: 1209 G 1209
G
Sbjct: 758 G 758
Score = 38.2 bits (89), Expect = 0.041
Identities = 46/218 (21%), Positives = 80/218 (36%), Gaps = 48/218 (22%)
Query: 1237 RGIRANGHLLLNS-AKMSKSEGNFLTLTEAVKKFSADGMRLCLADSGDSVEDANFVESMA 1295
+A G L+ KMSKS+GN + E V+ + AD +RL F+ M
Sbjct: 590 GKDKAGGELVYVGYEKMSKSKGNGIDPQEIVESYGADALRL-------------FIMFMG 636
Query: 1296 DAAVKKFSADGMRLCLADSGDSVEDAN-FVESMADAGILRLYTFIEWVKEILATQSTLRT 1354
A L +SG +E A F++ R++ V EI
Sbjct: 637 PIA--------ASLEWNESG--LEGARRFLD--------RVWNL---VYEITGELDAASL 675
Query: 1355 GSQD-SFNDKVFLSEMNLKIKETEDHYTKMLFKEALRTGFFELQAARDKYRELTAAEGGM 1413
K +++ +K+ + K +E+ T + + +L A+
Sbjct: 676 TVTALEEAQKELRRDVHKFLKKVTEDLEK---RESFNTAISAMMELLN---KLYKAK--- 726
Query: 1414 HRTLVLRFVEVQALLLCPVCPHVAEHVEMNLKIKETED 1451
L+L +++ +L P PH+AE E+ K+
Sbjct: 727 KEALMLEYLKGFVTVLSPFAPHLAE--ELWEKLGSEPF 762
Score = 33.2 bits (76), Expect = 1.3
Identities = 20/93 (21%), Positives = 44/93 (47%), Gaps = 10/93 (10%)
Query: 1439 HVEMNLKIKETEDHYTKMLFKEALRTGFFELQAARDKYRELTAAEGGMHRTLVLRFVEVQ 1498
+++ +K+ + K +E+ T + + +L A+ L+L +++
Sbjct: 688 RRDVHKFLKKVTEDLEK---RESFNTAISAMMELLN---KLYKAK---KEALMLEYLKGF 738
Query: 1499 ALLLCPVCPHVAEHVYQLLGKKGSIVK-ARWPE 1530
+L P PH+AE +++ LG + I+ A+WP
Sbjct: 739 VTVLSPFAPHLAEELWEKLGSEPFIIDNAKWPV 771
>gnl|CDD|173899 cd00672, CysRS_core, catalytic core domain of cysteinyl tRNA
synthetase. Cysteinyl tRNA synthetase (CysRS) catalytic
core domain. This class I enzyme is a monomer which
aminoacylates the 2'-OH of the nucleotide at the 3' of
the appropriate tRNA. The core domain is based on the
Rossman fold and is responsible for the ATP-dependent
formation of the enzyme bound aminoacyl-adenylate. It
contains the characteristic class I HIGH and KMSKS
motifs, which are involved in ATP binding.
Length = 213
Score = 48.3 bits (116), Expect = 7e-06
Identities = 17/35 (48%), Positives = 26/35 (74%)
Query: 1039 NGHLLLNSAKMSKSEGNFLTLTEAVKKFSADGMRL 1073
GHL ++ KMSKS GNF+T+ +A+KK+ + +RL
Sbjct: 165 TGHLTIDGEKMSKSLGNFITVRDALKKYDPEVLRL 199
Score = 48.3 bits (116), Expect = 7e-06
Identities = 17/35 (48%), Positives = 26/35 (74%)
Query: 1242 NGHLLLNSAKMSKSEGNFLTLTEAVKKFSADGMRL 1276
GHL ++ KMSKS GNF+T+ +A+KK+ + +RL
Sbjct: 165 TGHLTIDGEKMSKSLGNFITVRDALKKYDPEVLRL 199
>gnl|CDD|223138 COG0060, IleS, Isoleucyl-tRNA synthetase [Translation, ribosomal
structure and biogenesis].
Length = 933
Score = 49.5 bits (119), Expect = 1e-05
Identities = 33/151 (21%), Positives = 56/151 (37%), Gaps = 55/151 (36%)
Query: 12 LQKIEKEVQEEWDREKIYEETVGDAVRSSPDDKFFTTF--PFPYMNGRLHLGHTFSLSKF 69
L K E ++ + W+ IYE+ + F P PY NG +H+GH +
Sbjct: 20 LPKKEPKILKFWEENDIYEKIRE---ERNKGKPKFVLHDGP-PYANGNIHIGHALN---- 71
Query: 70 REKIYEETVGDAVRSSPDDKFFTTFPFPYMNGRLHLGHTFSLSKCEFSVRFNRLKGKRVL 129
KI ++ + VR+ ++G V
Sbjct: 72 --KILKDII---------------------------------------VRYKTMQGYDVP 90
Query: 130 FPFGFHCTGMPIKACADKL----KREMESFG 156
+ G+ C G+PI+ +K K+++ESFG
Sbjct: 91 YVPGWDCHGLPIELKVEKKLGIGKKDIESFG 121
Score = 47.2 bits (113), Expect = 9e-05
Identities = 60/254 (23%), Positives = 99/254 (38%), Gaps = 66/254 (25%)
Query: 1048 KMSKSEGNFLTLTEAVKKFSADGMRLCLADSGDSVEDANFVESMADAGILRLYTFIEWVK 1107
KMSKS GN + + + K+ AD +RL +A S D ED F + ++ V+
Sbjct: 602 KMSKSLGNVVDPQDVIDKYGADILRLWVA-SSDYWEDLRFSD-----------EILKQVR 649
Query: 1108 EILAT-QSTLR--TGSQDSFN--------------DKVFLSEMNLKIKETEDHYTKMLFK 1150
E+ ++T R G+ D F+ D+ LS +N +KE + Y F
Sbjct: 650 EVYRKIRNTYRFLLGNLDDFDPKKDAVLPEELRELDRWILSRLNSLVKEVREAYENYDFH 709
Query: 1151 EALRT--GF-------FELQAARDK-YREL------TAAEGGMHRTLVLRFVEVQALLLC 1194
+ +R F + L +D+ Y E AA+ ++ L + LL
Sbjct: 710 KVVRALMNFVSEDLSNWYLDIIKDRLYTEAADSPDRRAAQTTLYHIL-----KALVRLLA 764
Query: 1195 PVCPHVAEHVYQLLGKDLIQNHLTFFIYIHTAIWGDEPEMWPRGIRANGHLLLNSAKMSK 1254
P+ P AE ++Q L + + +H W PE+ L+ A ++
Sbjct: 765 PILPFTAEEIWQNLPGERKEE------SVHLEDW---PEVDE-------ELIDVEAALAA 808
Query: 1255 SEGNFLTLTEAVKK 1268
L L + V K
Sbjct: 809 RWEALLKLRDPVNK 822
Score = 38.0 bits (89), Expect = 0.053
Identities = 18/42 (42%), Positives = 25/42 (59%), Gaps = 1/42 (2%)
Query: 1251 KMSKSEGNFLTLTEAVKKFSADGMRLCLADSGDSVEDANFVE 1292
KMSKS GN + + + K+ AD +RL +A S D ED F +
Sbjct: 602 KMSKSLGNVVDPQDVIDKYGADILRLWVA-SSDYWEDLRFSD 642
>gnl|CDD|232953 TIGR00392, ileS, isoleucyl-tRNA synthetase. The isoleucyl tRNA
synthetase (IleS) is a class I amino acyl-tRNA ligase and
is particularly closely related to the valyl tRNA
synthetase. This model may recognize IleS from every
species, including eukaryotic cytosolic and mitochondrial
forms [Protein synthesis, tRNA aminoacylation].
Length = 861
Score = 48.1 bits (115), Expect = 4e-05
Identities = 50/182 (27%), Positives = 73/182 (40%), Gaps = 24/182 (13%)
Query: 1048 KMSKSEGNFLTLTEAVKKFSADGMRLCLADSGDSVEDANFVESMADAGILRLYTFIEW-V 1106
KMSKS GN + + + K+ AD +RL +A S D ED F + + ++ Y I W
Sbjct: 611 KMSKSLGNVVDPLKVINKYGADILRLYVASS-DPWEDLRFSDEILKQ-VVEKYRKIRWNT 668
Query: 1107 KEILATQSTLRTGSQDSFN----------DKVFLSEMNLKIKETEDHYTKMLFKEALRT- 1155
L T + L FN D+ LS +N ++E + K F + LR
Sbjct: 669 YRFLLTYANLD-KFDPLFNSVAVEKFPEEDRWILSRLNSLVEEVNEALEKYNFHKVLRAL 727
Query: 1156 -GFFELQAAR---DKYRELTAAEGGMHRTLVLRFVEVQAL-----LLCPVCPHVAEHVYQ 1206
F + + R+ E + + AL LL P PH AE +YQ
Sbjct: 728 QDFIVEELSNWYIRIIRDRLYCEAKDNDKRAAQTTLYYALLTLVRLLAPFLPHTAEEIYQ 787
Query: 1207 LL 1208
L
Sbjct: 788 NL 789
Score = 46.6 bits (111), Expect = 1e-04
Identities = 21/75 (28%), Positives = 33/75 (44%), Gaps = 11/75 (14%)
Query: 71 EKIYEETVGDAVRSSPDDKFFTTFPF----PYMNGRLHLGHTFSLSKCEFSVRFNRLKGK 126
I+E+ V+ K F F PY NG +HLGH + + +R+ ++G
Sbjct: 22 NDIFEK-----VKKLNKGK--PEFIFHDGPPYANGSIHLGHALNKILKDIILRYKTMQGF 74
Query: 127 RVLFPFGFHCTGMPI 141
V G+ G+PI
Sbjct: 75 NVTRKPGWDTHGLPI 89
Score = 38.5 bits (90), Expect = 0.035
Identities = 53/222 (23%), Positives = 79/222 (35%), Gaps = 55/222 (24%)
Query: 1251 KMSKSEGNFLTLTEAVKKFSADGMRLCLADSGDSVEDANFVESMADAAVKKFSADGMRLC 1310
KMSKS GN + + + K+ AD +RL +A S D ED +FS + ++
Sbjct: 611 KMSKSLGNVVDPLKVINKYGADILRLYVASS-DPWED------------LRFSDEILK-- 655
Query: 1311 LADSGDSVEDANFVESMADAGILRLYTFIEWVKEILATQSTLRTGSQDSFN--------- 1361
VE +R T+ L T + L FN
Sbjct: 656 -----------QVVEKYR---KIRWNTY-----RFLLTYANLD-KFDPLFNSVAVEKFPE 695
Query: 1362 -DKVFLSEMNLKIKETEDHYTKMLFKEALRT--GFFELQAAR---DKYRELTAAEGGMHR 1415
D+ LS +N ++E + K F + LR F + + R+ E +
Sbjct: 696 EDRWILSRLNSLVEEVNEALEKYNFHKVLRALQDFIVEELSNWYIRIIRDRLYCEAKDND 755
Query: 1416 TLVLRFVEVQAL-----LLCPVCPHVAEHVEMNLKIKETEDH 1452
+ AL LL P PH AE + NL E E+
Sbjct: 756 KRAAQTTLYYALLTLVRLLAPFLPHTAEEIYQNLPGGEEEES 797
>gnl|CDD|173909 cd00818, IleRS_core, catalytic core domain of isoleucyl-tRNA
synthetases. Isoleucine amino-acyl tRNA synthetases
(IleRS) catalytic core domain . This class I enzyme is a
monomer which aminoacylates the 2'-OH of the nucleotide
at the 3' of the appropriate tRNA. The core domain is
based on the Rossman fold and is responsible for the
ATP-dependent formation of the enzyme bound
aminoacyl-adenylate. It contains the characteristic
class I HIGH and KMSKS motifs, which are involved in ATP
binding. IleRS has an insertion in the core domain,
which is subject to both deletions and rearrangements.
This editing region hydrolyzes mischarged cognate tRNAs
and thus prevents the incorporation of chemically
similar amino acids.
Length = 338
Score = 46.1 bits (110), Expect = 1e-04
Identities = 19/65 (29%), Positives = 29/65 (44%), Gaps = 5/65 (7%)
Query: 97 PYMNGRLHLGHTFSLSKCEFSVRFNRLKGKRVLFPFGFHCTGMPI-----KACADKLKRE 151
PY NG H GH + + R+ ++G V G+ C G+PI K K++
Sbjct: 10 PYANGLPHYGHALNKILKDIINRYKTMQGYYVPRRPGWDCHGLPIELKVEKELGISGKKD 69
Query: 152 MESFG 156
+E G
Sbjct: 70 IEKMG 74
Score = 38.8 bits (91), Expect = 0.021
Identities = 19/40 (47%), Positives = 24/40 (60%)
Query: 1048 KMSKSEGNFLTLTEAVKKFSADGMRLCLADSGDSVEDANF 1087
KMSKS GN++ E V K+ AD +RL +A S ED F
Sbjct: 299 KMSKSLGNYVDPQEVVDKYGADALRLWVASSDVYAEDLRF 338
Score = 38.8 bits (91), Expect = 0.021
Identities = 19/40 (47%), Positives = 24/40 (60%)
Query: 1251 KMSKSEGNFLTLTEAVKKFSADGMRLCLADSGDSVEDANF 1290
KMSKS GN++ E V K+ AD +RL +A S ED F
Sbjct: 299 KMSKSLGNYVDPQEVVDKYGADALRLWVASSDVYAEDLRF 338
>gnl|CDD|232974 TIGR00435, cysS, cysteinyl-tRNA synthetase. This model finds the
cysteinyl-tRNA synthetase from most but not from all
species. The enzyme from one archaeal species,
Archaeoglobus fulgidus, is found but the equivalent
enzymes from some other Archaea, including Methanococcus
jannaschii, are not found, although biochemical evidence
suggests that tRNA(Cys) in these species are charged
directly with Cys rather than through a misacylation and
correction pathway as for tRNA(Gln) [Protein synthesis,
tRNA aminoacylation].
Length = 464
Score = 44.7 bits (106), Expect = 3e-04
Identities = 31/143 (21%), Positives = 52/143 (36%), Gaps = 19/143 (13%)
Query: 1039 NGHLLLNSAKMSKSEGNFLTLTEAVKKFSADGMRLCLADSGDSVEDANFVESM---ADAG 1095
NG L++++ KMSKS GNF T+ + +K + + +R L S +F E + A
Sbjct: 256 NGFLMIDNEKMSKSLGNFFTVRDVLKNYDPEILRYFLL-SVHYRSPLDFSEELLEAAKNA 314
Query: 1096 ILRLYTFIEWVKEILA--TQSTLRTGS-------------QDSFNDKVFLSEMNLKIKET 1140
+ RLY + + LA +L D N L+ + K
Sbjct: 315 LERLYKALRVLDTSLAYSGNQSLNKFPDEKEFEARFVEAMDDDLNTANALAVLFELAKSI 374
Query: 1141 EDHYTKMLFKEALRTGFFELQAA 1163
+ L L++
Sbjct: 375 NLTFVSKADAALLIEHLIFLESR 397
Score = 43.9 bits (104), Expect = 7e-04
Identities = 24/72 (33%), Positives = 37/72 (51%), Gaps = 5/72 (6%)
Query: 1209 GKDLIQNHLTFFIYIHTAIWGDEP-EMWPRGIRANGHLLLNSAKMSKSEGNFLTLTEAVK 1267
G DLI H I A +G + + W NG L++++ KMSKS GNF T+ + +K
Sbjct: 226 GVDLIFPHHENEIAQSEAAFGKQLAKYWMH----NGFLMIDNEKMSKSLGNFFTVRDVLK 281
Query: 1268 KFSADGMRLCLA 1279
+ + +R L
Sbjct: 282 NYDPEILRYFLL 293
>gnl|CDD|235681 PRK06039, ileS, isoleucyl-tRNA synthetase; Reviewed.
Length = 975
Score = 44.0 bits (105), Expect = 8e-04
Identities = 29/154 (18%), Positives = 52/154 (33%), Gaps = 61/154 (39%)
Query: 12 LQKIEKEVQEEWDREKIYEETVGDAVRSSPDDKFFTTFPF----PYMNGRLHLGHTFSLS 67
+E+EV + W I+E++ + + F F P NG H GH L+
Sbjct: 13 FPALEEEVLKFWKENDIFEKS----IENREGGPEFV---FYDGPPTANGLPHYGHL--LT 63
Query: 68 KFREKIYEETVGDAVRSSPDDKFFTTFPFPYMNGRLHLGHTFSLSKCEFSVRFNRLKGKR 127
+ T+ D V R+ +KG +
Sbjct: 64 R--------TIKDVV-----------------------------------PRYKTMKGYK 80
Query: 128 VLFPFGFHCTGMPIKACADKL-----KREMESFG 156
V G+ G+P++ +K K+++E +G
Sbjct: 81 VERRAGWDTHGLPVELEVEKELGISGKKDIEEYG 114
Score = 39.0 bits (92), Expect = 0.029
Identities = 48/199 (24%), Positives = 77/199 (38%), Gaps = 43/199 (21%)
Query: 1039 NGHLL-LNSAKMSKSEGNFLTLTEAVKKFSADGMRLCLADSGDSVEDANFVESMADAGIL 1097
+GH+L + KMSKS GN++ E K+ AD +R L S ED F E +
Sbjct: 582 HGHVLDEDGQKMSKSLGNYVDPFEVFDKYGADALRWYLLSSSAPWEDLRFSEDGVREVVR 641
Query: 1098 RL-------YTF---------IEWVKEILATQSTLRTGSQDSFN--DKVFLSEMNLKIKE 1139
+ Y+F ++ DS N D+ LS +N +KE
Sbjct: 642 KFLLTLWNVYSFFVLYANLDGFDYPPA---------EDEVDSLNELDRWILSRLNSLVKE 692
Query: 1140 TEDHYTKMLFKEALRT--GFFE------LQAARDKY--RELTAAEGGMHRTL--VLRFVE 1187
+ +A R F + ++ +R ++ E + + TL VL +
Sbjct: 693 VTEALDNYDITKAARAIRDFVDDLSNWYIRRSRRRFWKEEDDPDKLAAYATLYTVLETL- 751
Query: 1188 VQALLLCPVCPHVAEHVYQ 1206
+ L P P +AE +YQ
Sbjct: 752 --SRLAAPFTPFIAEEIYQ 768
Score = 37.8 bits (89), Expect = 0.052
Identities = 24/62 (38%), Positives = 32/62 (51%), Gaps = 1/62 (1%)
Query: 1242 NGHLL-LNSAKMSKSEGNFLTLTEAVKKFSADGMRLCLADSGDSVEDANFVESMADAAVK 1300
+GH+L + KMSKS GN++ E K+ AD +R L S ED F E V+
Sbjct: 582 HGHVLDEDGQKMSKSLGNYVDPFEVFDKYGADALRWYLLSSSAPWEDLRFSEDGVREVVR 641
Query: 1301 KF 1302
KF
Sbjct: 642 KF 643
Score = 32.8 bits (76), Expect = 1.8
Identities = 23/78 (29%), Positives = 36/78 (46%), Gaps = 13/78 (16%)
Query: 1499 ALLLCPVCPHVAEHVYQLLGKKG---SIVKARWPEG--GPIDDILVRSSSYLMEAAHAFR 1553
+ L P P +AE +YQ L ++ S+ A WPE ID+ L + M+
Sbjct: 752 SRLAAPFTPFIAEEIYQNLTREDAPESVHLADWPEVDESLIDEELEEA----MDLV---- 803
Query: 1554 LQVKNHILTASKKKGKKV 1571
++ + +A KK G KV
Sbjct: 804 REIVSLGRSARKKAGIKV 821
>gnl|CDD|237012 PRK11893, PRK11893, methionyl-tRNA synthetase; Reviewed.
Length = 511
Score = 43.3 bits (103), Expect = 8e-04
Identities = 48/208 (23%), Positives = 76/208 (36%), Gaps = 47/208 (22%)
Query: 1033 PRGIRANGHLLLNSAKMSKSEGNFLTLTEAVKKFSADGMRLCLADSGDSVE--DANFVES 1090
P+ + A+G L L+ KMSKS GN + + V ++ D +R L + D +F
Sbjct: 284 PKRVFAHGFLTLDGEKMSKSLGNVIDPFDLVDEYGVDAVRYFLLR--EIPFGQDGDFSR- 340
Query: 1091 MADAGILRLYTFIEWVKEILA---------TQSTLR--------TGSQDSFNDKVFLSEM 1133
+A FI + LA T S + + D+ L
Sbjct: 341 --EA-------FINRINADLANDLGNLAQRTLSMIAKNFDGKVPEPGALTEADEALLEAA 391
Query: 1134 NLKIKETEDHYTKMLFKEALRTGFFELQAARDKYRELTAA-----------EGGMHRTL- 1181
++ + F +AL L A +KY + A ++ L
Sbjct: 392 AALLERVRAAMDNLAFDKALE-AILALVRAANKYIDEQAPWSLAKTDPERLATVLYTLLE 450
Query: 1182 VLRFVEVQALLLCPVCPHVAEHVYQLLG 1209
VLR + A+LL PV P +A + LG
Sbjct: 451 VLRGI---AVLLQPVMPELAAKILDQLG 475
Score = 43.3 bits (103), Expect = 0.001
Identities = 17/42 (40%), Positives = 24/42 (57%)
Query: 89 KFFTTFPFPYMNGRLHLGHTFSLSKCEFSVRFNRLKGKRVLF 130
KF+ T P Y NG+ H+GH ++ + RF RL+G V F
Sbjct: 2 KFYITTPIYYPNGKPHIGHAYTTLAADVLARFKRLRGYDVFF 43
Score = 37.9 bits (89), Expect = 0.039
Identities = 16/44 (36%), Positives = 25/44 (56%)
Query: 1236 PRGIRANGHLLLNSAKMSKSEGNFLTLTEAVKKFSADGMRLCLA 1279
P+ + A+G L L+ KMSKS GN + + V ++ D +R L
Sbjct: 284 PKRVFAHGFLTLDGEKMSKSLGNVIDPFDLVDEYGVDAVRYFLL 327
Score = 32.5 bits (75), Expect = 2.3
Identities = 17/54 (31%), Positives = 21/54 (38%), Gaps = 14/54 (25%)
Query: 44 KFFTTFPFPYMNGRLHLGHTFSLSKFREKIYEETVGDAV----RSSPDDKFFTT 93
KF+ T P Y NG+ H+GH Y D + R D FF T
Sbjct: 2 KFYITTPIYYPNGKPHIGHA----------YTTLAADVLARFKRLRGYDVFFLT 45
>gnl|CDD|215452 PLN02843, PLN02843, isoleucyl-tRNA synthetase.
Length = 974
Score = 43.6 bits (103), Expect = 0.001
Identities = 21/47 (44%), Positives = 31/47 (65%), Gaps = 4/47 (8%)
Query: 97 PYMNGRLHLGHTFSLSKC--EFSVRFNRLKGKRVLFPFGFHCTGMPI 141
PY NG LH+GH +L+K +F R+ L+GK+V + G+ C G+PI
Sbjct: 41 PYANGDLHIGH--ALNKILKDFINRYQLLQGKKVHYVPGWDCHGLPI 85
>gnl|CDD|237028 PRK12267, PRK12267, methionyl-tRNA synthetase; Reviewed.
Length = 648
Score = 43.3 bits (103), Expect = 0.001
Identities = 15/44 (34%), Positives = 23/44 (52%)
Query: 87 DDKFFTTFPFPYMNGRLHLGHTFSLSKCEFSVRFNRLKGKRVLF 130
F+ T P Y NG+ H+GH ++ + R+ RL+G V F
Sbjct: 3 KKTFYITTPIYYPNGKPHIGHAYTTIAADALARYKRLQGYDVFF 46
Score = 38.6 bits (91), Expect = 0.029
Identities = 25/81 (30%), Positives = 36/81 (44%), Gaps = 18/81 (22%)
Query: 1202 EHVYQLLGKDLIQNHLTFFIYIHTAIWGDEPEMW-------PRGIRANGHLLLNSAKMSK 1254
L+GKD+ L F H W P M P+ + A+G L+ KMSK
Sbjct: 254 PADVHLVGKDI----LRF----HAIYW---PIMLMALGLPLPKKVFAHGWWLMKDGKMSK 302
Query: 1255 SEGNFLTLTEAVKKFSADGMR 1275
S+GN + E V ++ D +R
Sbjct: 303 SKGNVVDPEELVDRYGLDALR 323
Score = 35.9 bits (84), Expect = 0.18
Identities = 19/59 (32%), Positives = 28/59 (47%), Gaps = 10/59 (16%)
Query: 1021 HTAIWGDEPEMW-------PRGIRANGHLLLNSAKMSKSEGNFLTLTEAVKKFSADGMR 1072
H W P M P+ + A+G L+ KMSKS+GN + E V ++ D +R
Sbjct: 268 HAIYW---PIMLMALGLPLPKKVFAHGWWLMKDGKMSKSKGNVVDPEELVDRYGLDALR 323
Score = 32.1 bits (74), Expect = 3.0
Identities = 17/56 (30%), Positives = 21/56 (37%), Gaps = 14/56 (25%)
Query: 42 DDKFFTTFPFPYMNGRLHLGHTFSLSKFREKIYEETVGDAV----RSSPDDKFFTT 93
F+ T P Y NG+ H+GH Y DA+ R D FF T
Sbjct: 3 KKTFYITTPIYYPNGKPHIGHA----------YTTIAADALARYKRLQGYDVFFLT 48
>gnl|CDD|216482 pfam01406, tRNA-synt_1e, tRNA synthetases class I (C) catalytic
domain. This family includes only cysteinyl tRNA
synthetases.
Length = 301
Score = 42.3 bits (100), Expect = 0.001
Identities = 17/38 (44%), Positives = 25/38 (65%)
Query: 1039 NGHLLLNSAKMSKSEGNFLTLTEAVKKFSADGMRLCLA 1076
NGHL++ KMSKS GNFLT+ + +K++ +R L
Sbjct: 244 NGHLMIEGEKMSKSLGNFLTIRDVLKRYDPRILRYFLL 281
Score = 42.3 bits (100), Expect = 0.001
Identities = 17/38 (44%), Positives = 25/38 (65%)
Query: 1242 NGHLLLNSAKMSKSEGNFLTLTEAVKKFSADGMRLCLA 1279
NGHL++ KMSKS GNFLT+ + +K++ +R L
Sbjct: 244 NGHLMIEGEKMSKSLGNFLTIRDVLKRYDPRILRYFLL 281
>gnl|CDD|240411 PTZ00419, PTZ00419, valyl-tRNA synthetase-like protein;
Provisional.
Length = 995
Score = 41.5 bits (98), Expect = 0.004
Identities = 16/51 (31%), Positives = 27/51 (52%)
Query: 80 DAVRSSPDDKFFTTFPFPYMNGRLHLGHTFSLSKCEFSVRFNRLKGKRVLF 130
DA + KF P P + G LH+GH + + + +R++R+KG L+
Sbjct: 52 DAKSLNSGKKFVIVLPPPNVTGYLHIGHALTGAIQDSLIRYHRMKGDETLW 102
Score = 34.2 bits (79), Expect = 0.68
Identities = 15/50 (30%), Positives = 22/50 (44%), Gaps = 3/50 (6%)
Query: 17 KEVQEEWDR---EKIYEETVGDAVRSSPDDKFFTTFPFPYMNGRLHLGHT 63
KEV+ W + + + DA + KF P P + G LH+GH
Sbjct: 31 KEVESGWYEWWEKSGFFKPAEDAKSLNSGKKFVIVLPPPNVTGYLHIGHA 80
>gnl|CDD|215509 PLN02943, PLN02943, aminoacyl-tRNA ligase.
Length = 958
Score = 41.5 bits (97), Expect = 0.004
Identities = 67/324 (20%), Positives = 107/324 (33%), Gaps = 85/324 (26%)
Query: 60 LGHTFSLSKFREKIYE--ETVG----DAVRSSPDDKFFTTFPFPYMNGRLHLGHTFSLSK 113
+F + E+IY E+ G + R D F P P + G LH+GH ++
Sbjct: 57 TAKSFDFTS-EERIYNWWESQGYFKPNFDRGG--DPFVIPMPPPNVTGSLHMGHAMFVTL 113
Query: 114 CEFSVRFNRLKGKRVLFPFGFHCTGMPIKACADKLKREMESFGFPPQFPSEDTEPQTDKD 173
+ VR+NR+KG+ L+ G G+ + +K+
Sbjct: 114 EDIMVRYNRMKGRPTLWIPGTDHAGIATQLVVEKML------------------------ 149
Query: 174 DDDPVIKDKSKGKKSKAVAKAGSAKYQWQIMQSLGLEDDEIRKFADASHWLDHFPPLAVQ 233
S+G K + + K W+ W + +
Sbjct: 150 --------ASEGIKRTDLGRDEFTKRVWE--------------------WKEKYGGTITN 181
Query: 234 DLRSIGIHVDWRRTFITTDSNPFFDSFVRWQFMRLRDRHKIKYGKRYTVFSPRDNQPCMD 293
++ +G DW R T D V F+RL ++ I G +SP D
Sbjct: 182 QIKRLGASCDWSRERFTLDEQ--LSRAVVEAFVRLHEKGLIYQGSYMVNWSPNLQTAVSD 239
Query: 294 HDRASGEGVGPQEYTLIKMRLVKPYPAKLCCLDSKPVFLVAATLRPETMYGQTNAWVRPD 353
+ E G Y IK R+ FL AT RPET++G V P+
Sbjct: 240 LEVEYSEEPGTLYY--IKYRVA----------GGSEDFLTIATTRPETLFGDVAIAVNPE 287
Query: 354 ----------MAYIALSCLDSKPV 367
MA + ++ P+
Sbjct: 288 DDRYSKYIGKMAIVPMTYGRHVPI 311
>gnl|CDD|178177 PLN02563, PLN02563, aminoacyl-tRNA ligase.
Length = 963
Score = 39.4 bits (92), Expect = 0.020
Identities = 30/109 (27%), Positives = 49/109 (44%), Gaps = 24/109 (22%)
Query: 85 SPDD------KFFTTFPFPYMNGR-LHLGHTFSLSKCEFSVRFNRLKGKRVLFPFGFHCT 137
+PDD KF+ FPY +G LH+GH + + R+ R++G VL P G+
Sbjct: 101 TPDDVDTSKPKFYVLDMFPYPSGAGLHVGHPEGYTATDILARYKRMQGYNVLHPMGWDAF 160
Query: 138 GMPIKACA---------------DKLKREMESFGFPPQFPSE--DTEPQ 169
G+P + A + + +++S GF + E TEP+
Sbjct: 161 GLPAEQYAIETGTHPKITTLKNIARFRSQLKSLGFSYDWDREISTTEPE 209
Score = 36.3 bits (84), Expect = 0.17
Identities = 15/35 (42%), Positives = 19/35 (54%)
Query: 1499 ALLLCPVCPHVAEHVYQLLGKKGSIVKARWPEGGP 1533
LLL P PH+AE ++ LG S+ WPE P
Sbjct: 855 VLLLSPYAPHLAEELWFRLGHSNSLAYEPWPEANP 889
>gnl|CDD|184731 PRK14536, cysS, cysteinyl-tRNA synthetase; Provisional.
Length = 490
Score = 37.6 bits (87), Expect = 0.059
Identities = 31/106 (29%), Positives = 43/106 (40%), Gaps = 8/106 (7%)
Query: 1032 WPRGIRANGHLLLNSAKMSKSEGNFLTLTEAVKK-FSADGMR-LCLADSGDSVEDANFV- 1088
W R + LL+N KMSKS G FLTL+ +K F R L G F
Sbjct: 263 WVRYWLHHEFLLMNKGKMSKSAGQFLTLSSLQEKGFQPLDYRFFLL--GGHYRSQLAFSW 320
Query: 1089 ESM--ADAGILRLYTFI-EWVKEILATQSTLRTGSQDSFNDKVFLS 1131
E++ A A L + V AT ++R + ++V S
Sbjct: 321 EALKTAKAARRSLVRRVARVVDAARATTGSVRGTLAECAAERVAES 366
Score = 35.7 bits (82), Expect = 0.20
Identities = 46/184 (25%), Positives = 66/184 (35%), Gaps = 35/184 (19%)
Query: 1209 GKDLIQNHLTFFIYIHTAIWGDEPEMWPRGIRANGHLLLNSAKMSKSEGNFLTLTEAVKK 1268
G D I+ H T I A G W R + LL+N KMSKS G FLTL+ +K
Sbjct: 240 GVDHIRVHHTNEIAQCEAATGKP---WVRYWLHHEFLLMNKGKMSKSAGQFLTLSSLQEK 296
Query: 1269 -FSADGMR-LC--------LADSGDSVEDA-----NFVESMADAAVKKFSADGMRLCLAD 1313
F R LA S ++++ A + V +A + G
Sbjct: 297 GFQPLDYRFFLLGGHYRSQLAFSWEALKTAKAARRSLVRRVARVVDAARATTGSV--RGT 354
Query: 1314 SGDSVEDANFVESMADAGILRLYTFIEWVKEILATQSTLRTGSQDSFNDKVFLSEMNLKI 1373
+ + ES A L L F + +D F+ LSE+ +
Sbjct: 355 LAECAAER-VAESRASESELLLTDFRAAL--------------EDDFSTPKALSELQKLV 399
Query: 1374 KETE 1377
K+T
Sbjct: 400 KDTS 403
>gnl|CDD|235588 PRK05743, ileS, isoleucyl-tRNA synthetase; Reviewed.
Length = 912
Score = 36.6 bits (86), Expect = 0.12
Identities = 17/49 (34%), Positives = 27/49 (55%), Gaps = 8/49 (16%)
Query: 97 PYMNGRLHLGHTFSLSKC--EFSVRFNRLKGKRVLFPF--GFHCTGMPI 141
PY NG +H+GH +L+K + V+ + G P+ G+ C G+PI
Sbjct: 58 PYANGDIHIGH--ALNKILKDIIVKSKTMSGFDA--PYVPGWDCHGLPI 102
Score = 34.3 bits (80), Expect = 0.59
Identities = 17/56 (30%), Positives = 26/56 (46%), Gaps = 13/56 (23%)
Query: 12 LQKIEKEVQEEWDREKIYEETVGDAVRSSPDDKFFTTF-----PFPYMNGRLHLGH 62
L K E E+ + W+ +Y+ +R + K F P PY NG +H+GH
Sbjct: 21 LPKREPEILKRWEENDLYQ-----KIREANKGK--PKFILHDGP-PYANGDIHIGH 68
Score = 31.6 bits (73), Expect = 4.9
Identities = 13/26 (50%), Positives = 18/26 (69%)
Query: 1048 KMSKSEGNFLTLTEAVKKFSADGMRL 1073
KMSKS GN + + +KK+ AD +RL
Sbjct: 592 KMSKSLGNVIDPQDVIKKYGADILRL 617
Score = 31.6 bits (73), Expect = 4.9
Identities = 13/26 (50%), Positives = 18/26 (69%)
Query: 1251 KMSKSEGNFLTLTEAVKKFSADGMRL 1276
KMSKS GN + + +KK+ AD +RL
Sbjct: 592 KMSKSLGNVIDPQDVIKKYGADILRL 617
>gnl|CDD|177869 PLN02224, PLN02224, methionine-tRNA ligase.
Length = 616
Score = 35.8 bits (82), Expect = 0.20
Identities = 26/88 (29%), Positives = 43/88 (48%), Gaps = 10/88 (11%)
Query: 1206 QLLGKDLIQNHLTFFIYIHTAIWGDEPEMWPRGIRANGHLLLNSAKMSKSEGNFLTLTEA 1265
L+GKD+++ H ++ + + + P+M + +G L + KM KS GN L E
Sbjct: 325 HLIGKDILRFHAVYWPAMLMSAGLELPKM----VFGHGFLTKDGMKMGKSLGNTLEPFEL 380
Query: 1266 VKKFSADGMR------LCLADSGDSVED 1287
V+KF D +R + + GD ED
Sbjct: 381 VQKFGPDAVRYFFLREVEFGNDGDYSED 408
Score = 34.7 bits (79), Expect = 0.49
Identities = 20/58 (34%), Positives = 27/58 (46%)
Query: 88 DKFFTTFPFPYMNGRLHLGHTFSLSKCEFSVRFNRLKGKRVLFPFGFHCTGMPIKACA 145
D F T P Y+N H+G ++ + RF RL GK+V+F G G I A
Sbjct: 69 DTFVLTTPLYYVNAPPHMGSAYTTIAADSIARFQRLLGKKVIFITGTDEHGEKIATSA 126
Score = 32.8 bits (74), Expect = 1.9
Identities = 43/206 (20%), Positives = 75/206 (36%), Gaps = 40/206 (19%)
Query: 1033 PRGIRANGHLLLNSAKMSKSEGNFLTLTEAVKKFSADGMRLCLADSGDSVEDANFVESMA 1092
P+ + +G L + KM KS GN L E V+KF D +R + D ++ E
Sbjct: 351 PKMVFGHGFLTKDGMKMGKSLGNTLEPFELVQKFGPDAVRYFFLREVEFGNDGDYSED-- 408
Query: 1093 DAGILRLYTFIEWVKEILAT-----------------QSTLRTGSQDSFNDKVFLSEMNL 1135
FI+ V LA +STL S + +
Sbjct: 409 --------RFIKIVNAHLANTIGNLLNRTLGLLKKNCESTLVEDSTVAAEGVPLKDTVEK 460
Query: 1136 KIKETEDHYTKMLFKEALRTGFFELQAARDKYRE------------LTAAEGGMHRTLVL 1183
+++ + +Y + A E+ A + Y + ++A E ++L
Sbjct: 461 LVEKAQTNYENLSLSSACE-AVLEIGNAGNTYMDQRAPWFLFKQGGVSAEEAAKDLVIIL 519
Query: 1184 RFVEVQALLLCPVCPHVAEHVYQLLG 1209
+ V A+ L P+ P ++ +Y LG
Sbjct: 520 EVMRVIAVALSPIAPCLSLRIYSQLG 545
>gnl|CDD|235582 PRK05729, valS, valyl-tRNA synthetase; Reviewed.
Length = 874
Score = 35.5 bits (83), Expect = 0.32
Identities = 47/190 (24%), Positives = 67/190 (35%), Gaps = 45/190 (23%)
Query: 1048 KMSKSEGNFLTLTEAVKKFSADGMRLCLADSGDSVEDANFVESMADAGI-LRLYT----- 1101
KMSKS+GN + + + K+ AD +R LA ++A G +R
Sbjct: 520 KMSKSKGNVIDPLDLIDKYGADALRFTLA-------------ALASPGRDIRFDEERVEG 566
Query: 1102 -------------FIEWVKEILATQSTLRTGSQDSFNDKVFLSEMNLKIKETEDHYTKML 1148
F+ + A L + S D+ LS +N + E + K
Sbjct: 567 YRNFANKLWNASRFVL-MNLEGADVGELPDPEELSLADRWILSRLNRTVAEVTEALDKYR 625
Query: 1149 FKEALRT--GFF--ELQAARDKYRELT----AAEGGMHRTLVLRFVEVQAL-LLCPVCPH 1199
F EA R F E D Y EL L +V Q L LL P P
Sbjct: 626 FDEAARALYEFIWNEFC---DWYLELAKPVLQEAAKRATRATLAYVLEQILRLLHPFMPF 682
Query: 1200 VAEHVYQLLG 1209
+ E ++Q L
Sbjct: 683 ITEELWQKLA 692
Score = 34.7 bits (81), Expect = 0.52
Identities = 19/50 (38%), Positives = 25/50 (50%), Gaps = 4/50 (8%)
Query: 1491 VLRFVEVQAL-LLCPVCPHVAEHVYQLL---GKKGSIVKARWPEGGPIDD 1536
L +V Q L LL P P + E ++Q L G + SI+ A WPE D
Sbjct: 664 TLAYVLEQILRLLHPFMPFITEELWQKLAPLGIEESIMLAPWPEADEAID 713
Score = 30.5 bits (70), Expect = 9.5
Identities = 13/29 (44%), Positives = 19/29 (65%)
Query: 1251 KMSKSEGNFLTLTEAVKKFSADGMRLCLA 1279
KMSKS+GN + + + K+ AD +R LA
Sbjct: 520 KMSKSKGNVIDPLDLIDKYGADALRFTLA 548
>gnl|CDD|178752 PLN03213, PLN03213, repressor of silencing 3; Provisional.
Length = 759
Score = 34.8 bits (79), Expect = 0.40
Identities = 20/51 (39%), Positives = 30/51 (58%), Gaps = 6/51 (11%)
Query: 1279 ADSGDSVEDANFVESMADAAVKKFSADGMRLCLADSGDSVEDANFVESMAD 1329
+D GD+VE+ ++SMAD A+ +D GD+VED ++SMAD
Sbjct: 476 SDDGDAVENDTAIDSMADDTASNSMAE------SDDGDNVEDDTAIDSMAD 520
>gnl|CDD|178532 PLN02946, PLN02946, cysteine-tRNA ligase.
Length = 557
Score = 34.5 bits (79), Expect = 0.47
Identities = 15/37 (40%), Positives = 23/37 (62%)
Query: 1039 NGHLLLNSAKMSKSEGNFLTLTEAVKKFSADGMRLCL 1075
NG + ++S KMSKS GNF T+ + + + +RL L
Sbjct: 314 NGFVTVDSEKMSKSLGNFFTIRQVIDLYHPLALRLFL 350
Score = 34.5 bits (79), Expect = 0.47
Identities = 15/37 (40%), Positives = 23/37 (62%)
Query: 1242 NGHLLLNSAKMSKSEGNFLTLTEAVKKFSADGMRLCL 1278
NG + ++S KMSKS GNF T+ + + + +RL L
Sbjct: 314 NGFVTVDSEKMSKSLGNFFTIRQVIDLYHPLALRLFL 350
>gnl|CDD|224675 COG1761, RPB11, DNA-directed RNA polymerase, subunit L
[Transcription].
Length = 99
Score = 31.9 bits (73), Expect = 0.56
Identities = 12/51 (23%), Positives = 18/51 (35%), Gaps = 1/51 (1%)
Query: 1434 PHVAEHVEMNLKIKETEDHYTKMLFKEALRTGFFELQAARDKYRELTAAEG 1484
PH ++IK K K A R +L+ D++ E E
Sbjct: 50 PHPLID-NPKIRIKTKGGVDPKEALKRAARKILKDLEELLDQFEEFEKKEK 99
Score = 29.2 bits (66), Expect = 4.4
Identities = 10/47 (21%), Positives = 17/47 (36%)
Query: 1129 FLSEMNLKIKETEDHYTKMLFKEALRTGFFELQAARDKYRELTAAEG 1175
+ ++IK K K A R +L+ D++ E E
Sbjct: 53 LIDNPKIRIKTKGGVDPKEALKRAARKILKDLEELLDQFEEFEKKEK 99
Score = 29.2 bits (66), Expect = 4.4
Identities = 10/47 (21%), Positives = 17/47 (36%)
Query: 1365 FLSEMNLKIKETEDHYTKMLFKEALRTGFFELQAARDKYRELTAAEG 1411
+ ++IK K K A R +L+ D++ E E
Sbjct: 53 LIDNPKIRIKTKGGVDPKEALKRAARKILKDLEELLDQFEEFEKKEK 99
>gnl|CDD|225832 COG3295, COG3295, Uncharacterized protein conserved in bacteria
[Function unknown].
Length = 213
Score = 33.6 bits (77), Expect = 0.62
Identities = 19/67 (28%), Positives = 26/67 (38%), Gaps = 9/67 (13%)
Query: 450 DQWYLDYGEPTWKAAAEQCLANMNTYHDEVRRNFGASLNWLHEYACSRTYGLGTKLPWDE 509
D+WY+ + P A A + R A LN LH+ G GT + W
Sbjct: 112 DEWYVSFTAPGTDAWASYDRGTGVAEVEHTDRGAIAVLNDLHK-------GRGTGVAW-- 162
Query: 510 QWLIESL 516
W I+ L
Sbjct: 163 LWFIDLL 169
Score = 33.6 bits (77), Expect = 0.62
Identities = 19/67 (28%), Positives = 26/67 (38%), Gaps = 9/67 (13%)
Query: 802 DQWYLDYGEPTWKAAAEQCLANMNTYHDEVRRNFGASLNWLHEYACSRTYGLGTKLPWDE 861
D+WY+ + P A A + R A LN LH+ G GT + W
Sbjct: 112 DEWYVSFTAPGTDAWASYDRGTGVAEVEHTDRGAIAVLNDLHK-------GRGTGVAW-- 162
Query: 862 QWLIESL 868
W I+ L
Sbjct: 163 LWFIDLL 169
>gnl|CDD|173001 PRK14535, cysS, cysteinyl-tRNA synthetase; Provisional.
Length = 699
Score = 33.9 bits (77), Expect = 0.85
Identities = 22/70 (31%), Positives = 38/70 (54%), Gaps = 6/70 (8%)
Query: 1039 NGHLLLNSAKMSKSEGNFLTLTEAVKKFSADGMRLCLA----DSGDSVEDANFVESMADA 1094
NG + ++ KMSKS GNF T+ E +K++ + +R + S + DA+ + A
Sbjct: 499 NGFIRVDGEKMSKSLGNFFTIREVLKQYDPEVVRFFILRAHYRSPLNYSDAHLDD--AKG 556
Query: 1095 GILRLYTFIE 1104
+ RLYT ++
Sbjct: 557 ALTRLYTTLK 566
Score = 33.5 bits (76), Expect = 1.1
Identities = 14/35 (40%), Positives = 23/35 (65%)
Query: 1242 NGHLLLNSAKMSKSEGNFLTLTEAVKKFSADGMRL 1276
NG + ++ KMSKS GNF T+ E +K++ + +R
Sbjct: 499 NGFIRVDGEKMSKSLGNFFTIREVLKQYDPEVVRF 533
>gnl|CDD|215214 PLN02381, PLN02381, valyl-tRNA synthetase.
Length = 1066
Score = 33.3 bits (76), Expect = 1.5
Identities = 22/75 (29%), Positives = 34/75 (45%), Gaps = 3/75 (4%)
Query: 78 VGDAVRSSPDDKFFTTFPFPYMNGRLHLGHTFSLSKCEFSVRFNRLKGKRVLFPFGFHCT 137
DA S P F P P + G LH+GH + + + +R+ R+ G L+ G
Sbjct: 120 GADAKSSKP--PFVIVLPPPNVTGALHIGHALTAAIEDTIIRWKRMSGYNALWVPGVDHA 177
Query: 138 GMPIKACAD-KLKRE 151
G+ + + KL RE
Sbjct: 178 GIATQVVVEKKLMRE 192
>gnl|CDD|153416 cd07962, Anticodon_Ia_Val, Anticodon-binding domain of valyl tRNA
synthetases. This domain is found in valyl tRNA
synthetases (ValRS), which belong to the class Ia
aminoacyl tRNA synthetases. It lies C-terminal to the
catalytic core domain, and recognizes and specifically
binds to the tRNA anticodon. ValRS catalyzes the transfer
of valine to the 3'-end of its tRNA.
Length = 135
Score = 31.4 bits (72), Expect = 1.7
Identities = 22/100 (22%), Positives = 35/100 (35%), Gaps = 25/100 (25%)
Query: 1126 DKVFLSEMNLKIKETEDHYTKMLFKEALRT--GFF--------------ELQAARDKYRE 1169
D+ LS +N ++E + F EA FF L ++ ++
Sbjct: 44 DRWILSRLNKTVEEVTEALENYRFSEAATALYEFFWNDFCDWYLELVKPRLYGEDEEEKK 103
Query: 1170 LTAAEGGMHRTLVLRFV-EVQALLLCPVCPHVAEHVYQLL 1208
A L +V E LL P P + E ++Q L
Sbjct: 104 AARA--------TLYYVLETILRLLHPFMPFITEELWQRL 135
>gnl|CDD|132320 TIGR03277, methan_mark_9, putative methanogenesis marker domain 9.
A gene for a protein that contains a copy of this
domain, to date, is found in a completed prokaryotic
genome if and only if the species is one of the archaeal
methanogens. The exact function is unknown, but likely
is linked to methanogenesis or a process closely
connected to it. A 69-amino acid core region of this
110-amino acid domain contains eight invariant Cys
residues, including two copies of a motif [WFY]CCxxKPC.
These motifs could be consistent with predicted
metal-binding transcription factor as was suggested for
the COG4008 family. Some members of this family have an
additional N-terminal domain of about 250 amino acids
from the nifR3 family of predicted TIM-barrel proteins.
Length = 109
Score = 30.5 bits (69), Expect = 2.1
Identities = 19/78 (24%), Positives = 31/78 (39%), Gaps = 11/78 (14%)
Query: 289 QPCMDHDRASGEGVGPQEYTLIKMRLVKPYPAKL-----------CCLDSKPVFLVAATL 337
+PC H + + G+ PQE+ IK K P CC +KP L + L
Sbjct: 26 KPCPIHPKLAELGLSPQEFVRIKEEFAKGTPLGQGENTCFGSLVWCCKITKPCPLRDSAL 85
Query: 338 RPETMYGQTNAWVRPDMA 355
+ M + ++ +A
Sbjct: 86 QRIGMSPEEYMELKKKLA 103
>gnl|CDD|224842 COG1931, COG1931, Uncharacterized protein conserved in archaea
[Function unknown].
Length = 140
Score = 30.8 bits (70), Expect = 2.3
Identities = 15/71 (21%), Positives = 24/71 (33%), Gaps = 5/71 (7%)
Query: 14 KIEKEVQEEWDREKIYEETVGDAVRSSPDDKFFTTFPFPYMNGRLHLGHTFSLSKFREKI 73
++E EV D EK V A+ + Y SL + RE +
Sbjct: 4 EVEAEVYPTEDPEK-----VLKAILNLFPGAEIEVEDEDYEILVGEGRTLKSLERLRELL 58
Query: 74 YEETVGDAVRS 84
++ + D R
Sbjct: 59 RKQRILDTARM 69
>gnl|CDD|237855 PRK14900, valS, valyl-tRNA synthetase; Provisional.
Length = 1052
Score = 32.7 bits (74), Expect = 2.3
Identities = 63/281 (22%), Positives = 98/281 (34%), Gaps = 68/281 (24%)
Query: 80 DAVRSSPDDKFFTTFPFPYMNGRLHLGHTFSLSKCEFSVRFNRLKGKRVLFPFGFHCTGM 139
+ R+ P F P P + G LHLGH + + + +R+ R+ G L+ G G+
Sbjct: 42 EHDRTRP--PFSIVLPPPNVTGSLHLGHALTATLQDVLIRWKRMSGFNTLWLPGTDHAGI 99
Query: 140 PIKACADKLKREMESFGFPPQFPSEDTEPQTDKDDDDPVIKDKSKGKKSKAVAKAGSAKY 199
+ +K ++ E KKS+
Sbjct: 100 ATQMIVEKELKKTE--------------------------------KKSR---------- 117
Query: 200 QWQIMQSLGLEDDEIRKFADASHWLDHFPPLAVQDLRSIGIHVDWRRTFITTDSNPFFDS 259
LG E R +A W + + + +++G +DW+R T D
Sbjct: 118 -----HDLGREAFLERVWA----WKEQYGSRIGEQHKALGASLDWQRERFTMDEG--LSR 166
Query: 260 FVRWQFMRLRDRHKIKYGKRYTVFSPRDNQPCMDHDRASGEGVGPQEYTLIKMRLVKPYP 319
VR F+RL + I K+ + P D + E + ++ YP
Sbjct: 167 AVREVFVRLHEEGLIYREKKLINWCPDCRTALSDLEVEHEEAHQGELWSF-------AYP 219
Query: 320 AKLCCLDSKPVFLVAATLRPETMYGQTNAWVRP-DMAYIAL 359
D +V AT RPETM G T V P D Y+AL
Sbjct: 220 LA----DGSGE-IVVATTRPETMLGDTAVAVHPLDPRYMAL 255
>gnl|CDD|153412 cd07958, Anticodon_Ia_Leu_BEm, Anticodon-binding domain of bacterial
and eukaryotic mitochondrial leucyl tRNA synthetases.
This domain is found in leucyl tRNA synthetases (LeuRS),
which belong to the class Ia aminoacyl tRNA synthetases.
It lies C-terminal to the catalytic core domain. In
contrast to other class Ia enzymes, the anticodon is not
used as an identity element in LeuRS (with exceptions
such as Saccharomyces cerevisiae and some other
eukaryotes). No anticodon-binding site can be defined for
this family, which includes bacterial and eukaryotic
mitochondrial members, as well as LeuRS from the archaeal
Halobacteria. LeuRS catalyzes the transfer of leucine to
the 3'-end of its tRNA.
Length = 117
Score = 30.3 bits (69), Expect = 3.0
Identities = 24/114 (21%), Positives = 47/114 (41%), Gaps = 14/114 (12%)
Query: 1098 RLYTFIEWVKEILATQSTLRTGSQDSFNDKVFLSEMNLKIKETEDHYTKMLFKEALRT-- 1155
R++ + + E LA + S+ DK +++ IK+ + ++ F A+
Sbjct: 15 RVWRLVTELAEALAAPAAAAELSE---EDKELRRKLHKTIKKVTEDIERLRFNTAIAALM 71
Query: 1156 GFF-ELQAARDKYRELTAAEGGMHRTLVLRFVEVQALLLCPVCPHVAEHVYQLL 1208
L + K + H ++ +E LLL P PH+AE +++ L
Sbjct: 72 ELVNALYKYKKKDAQ--------HAAVLREALETLVLLLAPFAPHIAEELWEEL 117
Score = 29.9 bits (68), Expect = 4.0
Identities = 12/42 (28%), Positives = 20/42 (47%), Gaps = 2/42 (4%)
Query: 1478 ELTAAEG--GMHRTLVLRFVEVQALLLCPVCPHVAEHVYQLL 1517
L + H ++ +E LLL P PH+AE +++ L
Sbjct: 76 ALYKYKKKDAQHAAVLREALETLVLLLAPFAPHIAEELWEEL 117
>gnl|CDD|173900 cd00674, LysRS_core_class_I, catalytic core domain of class I lysyl
tRNA synthetase. Class I lysyl tRNA synthetase (LysRS)
catalytic core domain. This class I enzyme is a monomer
which aminoacylates the 2'-OH of the nucleotide at the 3'
of the appropriate tRNA. The core domain is based on the
Rossman fold and is responsible for the ATP-dependent
formation of the enzyme bound aminoacyl-adenylate. It
contains the characteristic class I HIGH and KMSKS
motifs, which are involved in ATP binding. The class I
LysRS is found only in archaea and some bacteria and has
evolved separately from class II LysRS, as the two do not
share structural or sequence similarity.
Length = 353
Score = 31.9 bits (73), Expect = 3.0
Identities = 18/66 (27%), Positives = 30/66 (45%), Gaps = 7/66 (10%)
Query: 1042 LLLNSAKMSKSEGNFLTLTEAVKKFSADGMRLCLADSGDSVEDANFVESMADAGILRLYT 1101
L KMS S+GN +T ++ ++ + +R A + + F D ILRLY
Sbjct: 269 GLKGGGKMSSSKGNVITPSDWLEVAPPEVLRYLYARRKNPEKHIGF-----DLDILRLYD 323
Query: 1102 FIEWVK 1107
E+ +
Sbjct: 324 --EYDR 327
>gnl|CDD|237514 PRK13804, ileS, isoleucyl-tRNA synthetase; Provisional.
Length = 961
Score = 32.2 bits (74), Expect = 3.1
Identities = 16/56 (28%), Positives = 26/56 (46%), Gaps = 13/56 (23%)
Query: 12 LQKIEKEVQEEWDREKIYEETVGDAVRSSPDDKFFTTF-----PFPYMNGRLHLGH 62
L + E E+Q W+ +Y++ +R + F P PY NG +H+GH
Sbjct: 26 LPQKEPEIQARWEEIDLYKK-----LREQAKGR--PKFVLHDGP-PYANGNIHIGH 73
Score = 31.8 bits (73), Expect = 3.6
Identities = 17/47 (36%), Positives = 27/47 (57%), Gaps = 4/47 (8%)
Query: 97 PYMNGRLHLGHTFSLSKC--EFSVRFNRLKGKRVLFPFGFHCTGMPI 141
PY NG +H+GH +L+K + VR ++ G + G+ C G+PI
Sbjct: 63 PYANGNIHIGH--ALNKILKDVIVRSKQMLGFDANYVPGWDCHGLPI 107
Score = 31.1 bits (71), Expect = 7.4
Identities = 15/37 (40%), Positives = 23/37 (62%), Gaps = 1/37 (2%)
Query: 1048 KMSKSEGNFLTLTEAVKKFSADGMRLCLADSGDSVED 1084
KMSKS GN ++ + +K+ AD +RL +A D +D
Sbjct: 630 KMSKSLGNTVSPQDVIKQSGADILRLWVASV-DYSDD 665
Score = 31.1 bits (71), Expect = 7.4
Identities = 15/37 (40%), Positives = 23/37 (62%), Gaps = 1/37 (2%)
Query: 1251 KMSKSEGNFLTLTEAVKKFSADGMRLCLADSGDSVED 1287
KMSKS GN ++ + +K+ AD +RL +A D +D
Sbjct: 630 KMSKSLGNTVSPQDVIKQSGADILRLWVASV-DYSDD 665
>gnl|CDD|176108 cd08416, PBP2_MdcR, The C-terminal substrate-binding domian of
LysR-type transcriptional regulator MdcR, which involved
in the malonate catabolism contains the type 2
periplasmic binding fold. This family includes the
C-terminal substrate binding domain of LysR-type
transcriptional regulator (LTTR) MdcR that controls the
expression of the malonate decarboxylase (mdc) genes.
Like other members of the LTTRs, MdcR is a positive
regulatory protein for its target promoter and composed
of two functional domains joined by a linker helix
involved in oligomerization: an N-terminal HTH
(helix-turn-helix) domain, which is responsible for the
DNA-binding specificity, and a C-terminal
substrate-binding domain, which is structurally
homologous to the type 2 periplasmic binding proteins
(PBP2). The PBP2 are responsible for the uptake of a
variety of substrates such as phosphate, sulfate,
polysaccharides, lysine/arginine/ornithine, and
histidine. The PBP2 bind their ligand in the cleft
between these domains in a manner resembling a Venus
flytrap. After binding their specific ligand with high
affinity, they can interact with a cognate membrane
transport complex comprised of two integral membrane
domains and two cytoplasmically located ATPase domains.
This interaction triggers the ligand translocation
across the cytoplasmic membrane energized by ATP
hydrolysis. Besides transport proteins, the PBP2
superfamily includes the substrate- binding domains from
ionotropic glutamate receptors, LysR-like
transcriptional regulators, and unorthodox sensor
proteins involved in signal transduction.
Length = 199
Score = 31.2 bits (71), Expect = 3.5
Identities = 17/60 (28%), Positives = 28/60 (46%), Gaps = 7/60 (11%)
Query: 720 VKKLLQKKIDIIGVALKAPVTSHSVIYTLPMLSIREDKGTGIVTSVPSDSPDDYAALVDL 779
+KKL ++D I VA + +P+ ED I +VP+ SP ++ +DL
Sbjct: 42 LKKLKDGELDAILVATPEGLNDPDFE-VVPLF---EDD---IFLAVPATSPLAASSEIDL 94
>gnl|CDD|235645 PRK05912, PRK05912, tyrosyl-tRNA synthetase; Validated.
Length = 408
Score = 31.2 bits (72), Expect = 4.5
Identities = 24/85 (28%), Positives = 35/85 (41%), Gaps = 21/85 (24%)
Query: 1042 LLLNS--AKMSKSEGNFLTLTEAVKKFSADGMRLCLADSGDSVEDANFVESMADAGI--- 1096
LL KM KSEGN + L E +K S M +++DA +
Sbjct: 224 LLTGLDGKKMGKSEGNAVWLDE--EKTSPYEM-------------YQKWMNISDADVWRY 268
Query: 1097 LRLYTFIEWVKEILATQSTLRTGSQ 1121
L+L TF+ ++EI + L G
Sbjct: 269 LKLLTFLS-LEEIEELEEELAEGPN 292
>gnl|CDD|215477 PLN02882, PLN02882, aminoacyl-tRNA ligase.
Length = 1159
Score = 31.2 bits (71), Expect = 5.9
Identities = 14/31 (45%), Positives = 19/31 (61%)
Query: 1048 KMSKSEGNFLTLTEAVKKFSADGMRLCLADS 1078
KMSKS N+ E + K+ AD +RL L +S
Sbjct: 614 KMSKSLKNYPDPNEVIDKYGADALRLYLINS 644
Score = 31.2 bits (71), Expect = 5.9
Identities = 14/31 (45%), Positives = 19/31 (61%)
Query: 1251 KMSKSEGNFLTLTEAVKKFSADGMRLCLADS 1281
KMSKS N+ E + K+ AD +RL L +S
Sbjct: 614 KMSKSLKNYPDPNEVIDKYGADALRLYLINS 644
>gnl|CDD|153411 cd07957, Anticodon_Ia_Met, Anticodon-binding domain of methionyl tRNA
synthetases. This domain is found in methionyl tRNA
synthetases (MetRS), which belong to the class Ia
aminoacyl tRNA synthetases. It lies C-terminal to the
catalytic core domain, and recognizes and specifically
binds to the tRNA anticodon (CAU). MetRS catalyzes the
transfer of methionine to the 3'-end of its tRNA.
Length = 129
Score = 29.4 bits (67), Expect = 6.5
Identities = 22/97 (22%), Positives = 41/97 (42%), Gaps = 19/97 (19%)
Query: 1126 DKVFLSEMNLKIKETEDHYTKMLFKEALRT---------GFFELQA----ARDKYRELTA 1172
D+ L E ++E + ++ F++AL + + A A+++ E A
Sbjct: 38 DEELLEEAEELLEEVAEAMEELEFRKALEEIMELARAANKYIDETAPWKLAKEEDPERLA 97
Query: 1173 AEGGMHRTL-VLRFVEVQALLLCPVCPHVAEHVYQLL 1208
++ L +LR + A+LL P P AE + L
Sbjct: 98 TV--LYVLLELLRIL---AILLSPFMPETAEKILDQL 129
>gnl|CDD|180458 PRK06194, PRK06194, hypothetical protein; Provisional.
Length = 287
Score = 30.4 bits (69), Expect = 7.8
Identities = 25/72 (34%), Positives = 34/72 (47%), Gaps = 13/72 (18%)
Query: 1264 EAVKKFSADGMRLCLADSGDSVEDANFVESMA-DAAVKKFSADGMRLCLADSGDSVEDAN 1322
+ +A GM+L LAD V+ A D AV + A G + L D V DA
Sbjct: 21 AFARIGAALGMKLVLAD----------VQQDALDRAVAELRAQGAEV-LGVRTD-VSDAA 68
Query: 1323 FVESMADAGILR 1334
VE++ADA + R
Sbjct: 69 QVEALADAALER 80
>gnl|CDD|235301 PRK04452, PRK04452, acetyl-CoA decarbonylase/synthase complex subunit
delta; Provisional.
Length = 319
Score = 30.3 bits (69), Expect = 8.8
Identities = 26/112 (23%), Positives = 49/112 (43%), Gaps = 23/112 (20%)
Query: 1227 IWGDEPEMWPRGIRANGHLLLNS----AKMSKSEGNFLTLTEAVKKFSADGMRLCLADSG 1282
++ PE WP ++ ++N AK V+++ AD + L L +
Sbjct: 54 VFDMPPEDWPEAVKEPFGDVMNDPAAWAKK------------CVEEYGADMITLHLISTD 101
Query: 1283 DSVEDANFVESMADAA--VKK-FSADGMRLCLADSGDSVEDANFVESMADAG 1331
+ +D S +AA V++ A + L + SG+ +DA +E +A+A
Sbjct: 102 PNGKDK----SPEEAAKTVEEVLQAVDVPLIIGGSGNPEKDAEVLEKVAEAA 149
>gnl|CDD|187563 cd05253, UDP_GE_SDE_e, UDP glucuronic acid epimerase, extended (e)
SDRs. This subgroup contains UDP-D-glucuronic acid
4-epimerase, an extended SDR, which catalyzes the
conversion of UDP-alpha-D-glucuronic acid to
UDP-alpha-D-galacturonic acid. This group has the SDR's
canonical catalytic tetrad and the TGxxGxxG NAD-binding
motif of the extended SDRs. Extended SDRs are distinct
from classical SDRs. In addition to the Rossmann fold
(alpha/beta folding pattern with a central beta-sheet)
core region typical of all SDRs, extended SDRs have a
less conserved C-terminal extension of approximately 100
amino acids. Extended SDRs are a diverse collection of
proteins, and include isomerases, epimerases,
oxidoreductases, and lyases; they typically have a
TGXXGXXG cofactor binding motif. SDRs are a functionally
diverse family of oxidoreductases that have a single
domain with a structurally conserved Rossmann fold, an
NAD(P)(H)-binding region, and a structurally diverse
C-terminal region. Sequence identity between different
SDR enzymes is typically in the 15-30% range; they
catalyze a wide range of activities including the
metabolism of steroids, cofactors, carbohydrates,
lipids, aromatic compounds, and amino acids, and act in
redox sensing. Classical SDRs have an TGXXX[AG]XG
cofactor binding motif and a YXXXK active site motif,
with the Tyr residue of the active site motif serving as
a critical catalytic residue (Tyr-151, human
15-hydroxyprostaglandin dehydrogenase numbering). In
addition to the Tyr and Lys, there is often an upstream
Ser and/or an Asn, contributing to the active site;
while substrate binding is in the C-terminal region,
which determines specificity. The standard reaction
mechanism is a 4-pro-S hydride transfer and proton relay
involving the conserved Tyr and Lys, a water molecule
stabilized by Asn, and nicotinamide. Atypical SDRs
generally lack the catalytic residues characteristic of
the SDRs, and their glycine-rich NAD(P)-binding motif is
often different from the forms normally seen in
classical or extended SDRs. Complex (multidomain) SDRs
such as ketoreductase domains of fatty acid synthase
have a GGXGXXG NAD(P)-binding motif and an altered
active site motif (YXXXN). Fungal type ketoacyl
reductases have a TGXXXGX(1-2)G NAD(P)-binding motif.
Length = 332
Score = 30.4 bits (69), Expect = 9.0
Identities = 14/27 (51%), Positives = 15/27 (55%), Gaps = 3/27 (11%)
Query: 374 LRPETMYGQTNAWVRPDMAYIAFTTAT 400
LR T+YG W RPDMA FT A
Sbjct: 177 LRFFTVYGP---WGRPDMALFLFTKAI 200
>gnl|CDD|216786 pfam01921, tRNA-synt_1f, tRNA synthetases class I (K). This family
includes only lysyl tRNA synthetases from prokaryotes.
Length = 357
Score = 30.3 bits (69), Expect = 9.3
Identities = 20/71 (28%), Positives = 30/71 (42%), Gaps = 6/71 (8%)
Query: 1200 VAEHV-YQLLGKDLIQNHLTFFIY--IHTAIWGDEPEMWPRGIRANGHLLLNSAKMSKSE 1256
A V ++ GKD ++ I I G EP P LL KMS S+
Sbjct: 228 AALGVDFEPFGKDHAAPGGSYDTSSRIAREILGGEP---PEPFPYELILLKGGGKMSSSK 284
Query: 1257 GNFLTLTEAVK 1267
GN +T+ + ++
Sbjct: 285 GNVITIEDWLE 295
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.321 0.136 0.423
Gapped
Lambda K H
0.267 0.0762 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 83,427,868
Number of extensions: 8342407
Number of successful extensions: 7210
Number of sequences better than 10.0: 1
Number of HSP's gapped: 7058
Number of HSP's successfully gapped: 254
Length of query: 1618
Length of database: 10,937,602
Length adjustment: 110
Effective length of query: 1508
Effective length of database: 6,058,662
Effective search space: 9136462296
Effective search space used: 9136462296
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 66 (29.1 bits)