RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy5309
(1618 letters)
>1wz2_A Leucyl-tRNA synthetase; ligase, riken structural genomics/proteomics
initiativ structural genomics, ligase-RNA complex; 3.21A
{Pyrococcus horikoshii}
Length = 967
Score = 391 bits (1005), Expect = e-116
Identities = 154/585 (26%), Positives = 245/585 (41%), Gaps = 127/585 (21%)
Query: 652 QVLPYDPVPIIQVPEYGNLCAVTVYEKLKIQSQNDKDKLQEAKELVYLKGFYDGIMLVGE 711
V + +I++ YG+ AV KL I+SQ DK+KL++A + +Y ++ GI V
Sbjct: 355 IVENITYISLIKLEGYGDFPAVEEVNKLGIKSQKDKEKLEQATKTIYKAEYHKGIFKVPP 414
Query: 712 FKGKKVQEVKKLLQKKIDIIGVALKAPVTSHSVIYTLPMLSIREDKGTGIVTSVPSDSPD 771
++GK VQEVK+ + K++ G+A + + S +
Sbjct: 415 YEGKPVQEVKEAIAKEMLEKGIAEIMYEFAEKNVI--------------------SRFGN 454
Query: 772 DYAALVDLKKKPPFREKYHVTDEMCVVALC-DQWYLDYGEPTWKAAAEQCLANMNTYHDE 830
V+ + DQW++DYG P WK A + L M +
Sbjct: 455 R-----------------------AVIKIIHDQWFIDYGNPEWKEKARKALERMKILPET 491
Query: 831 VRRNFGASLNWLHEYACSRTYGLGTKLPWDEQWLIESLSDSTIYMAYYTVAHLLQGGTFR 890
R F A ++WL + AC+R GLGT LPWD +W+IESLSDSTIYMAYYT++ +
Sbjct: 492 RRAQFEAIIDWLDKKACARKIGLGTPLPWDPEWVIESLSDSTIYMAYYTISRHINKLRQE 551
Query: 891 GENGNALNIKAEDLTPEVWDYVFFKA------APFPPKCRVPKAKLDIMRREFQYWYPVD 944
G + E LTPE +DY+F + K +P + M+ EF+YW
Sbjct: 552 G------KLDPEKLTPEFFDYIFLEEFSEDKEKELEKKTGIPAEIIHEMKEEFEYW---- 601
Query: 945 LRCSGKDLIQNHLTFFIYIHTAIWGDEPEMWPRGIRANGHLLLNSAKDLIQNHLTFFIYK 1004
+P R +G
Sbjct: 602 ------------------------------YPLDWRCSGK-------------------- 611
Query: 1005 LFSDLIQNHLTFFIYIHTAIWGDEPEMWPRGIRANGHLLLNSAKMSKSEGNFLTLTEAVK 1064
DLI NHLTFFI+ H AI+ +E WP+GI NG L KMSKS+GN L +A++
Sbjct: 612 ---DLIPNHLTFFIFNHVAIFREEH--WPKGIAVNGFGTLEGQKMSKSKGNVLNFIDAIE 666
Query: 1065 KFSADGMRLCLADSGDSVEDANFVESMADAGILRLYTFIEWVKEILATQSTLRTGSQDSF 1124
+ AD +RL + + D ++ ++ F E + + + ++ +
Sbjct: 667 ENGADVVRLYIMSLAEHDSDFDWRRKEVGKLRKQIERFYELISQF--AEYEVKGNVELKD 724
Query: 1125 NDKVFLSEMNLKIKETEDHYTKMLFKEALRTGFFELQAARDKYRELT-AAEGGMHRTLVL 1183
D+ L +N IKET + + + A++ F+ + Y T + R ++
Sbjct: 725 IDRWMLHRLNKAIKETTNALEEFRTRTAVQWAFYSIMNDLRWYLRRTEGRDDEAKRYVLR 784
Query: 1184 RFVEVQALLLCPVCPHVAEHVYQLLGKDLIQNHLTFFIYIHTAIW 1228
+V L+ P PH+ E +++ LG + ++ A W
Sbjct: 785 TLADVWVRLMAPFTPHICEELWEKLGGE---------GFVSLAKW 820
Score = 300 bits (769), Expect = 4e-85
Identities = 93/427 (21%), Positives = 149/427 (34%), Gaps = 140/427 (32%)
Query: 12 LQKIEKEVQEEWDREKIYEETVGDAVRSSPDDKFFTTFPFPYMNGRLHLGHTFSLSKFRE 71
+ IE++ Q+ W KI+E + D
Sbjct: 6 FKAIEEKWQKRWLEAKIFEPNIRD------------------------------------ 29
Query: 72 KIYEETVGDAVRSSPDDKFFTTFPFPYMNGRLHLGHTFSLSKCEFSVRFNRLKGKRVLFP 131
+ KF+ T FPY++G LH+GH + + + RF R++G VLFP
Sbjct: 30 ------------KPKEKKFYITVAFPYLSGHLHVGHARTYTIPDVIARFKRMQGYNVLFP 77
Query: 132 FGFHCTGMPIKACADKLKREMESFGFPPQFPSEDTEPQTDKDDDDPVIKDKSKGKKSKAV 191
+H TG PI A+++K
Sbjct: 78 MAWHITGSPIVGIAERIKNRDP-------------------------------------- 99
Query: 192 AKAGSAKYQWQIMQSLGLEDDEIRKFADASHWLDHFPPLAVQDLRSIGIHVDWRRTFITT 251
K W + ++ + F D + + +F A + G VDW R F TT
Sbjct: 100 ------KTIWIYRDVYKVPEEILWTFEDPINIVKYFMKAAKETFIRAGFSVDWSREFYTT 153
Query: 252 DSNPFFDSFVRWQFMRLRDRHKIKYGKRYTVFSPRDNQPCMDHDRASGEGVGPQEYTLIK 311
P F F+ WQF +L+++ I G + P P DHD GE V +Y +IK
Sbjct: 154 SLFPPFSKFIEWQFWKLKEKGYIVKGAHRVRWDPVVGTPLGDHDLMEGEDVPILDYIIIK 213
Query: 312 MRLVKPYPAKLCCLDSKPVFLVAATLRPETMYGQTNAWVRPDMAYIALSCLDSKPVFLVA 371
L + + + ++L AATLRPET+YG TN WV P+ Y+
Sbjct: 214 FELRE---------NGEVIYLPAATLRPETVYGVTNMWVNPNATYV-------------- 250
Query: 372 ATLRPETMYGQTNAWVRPDMAYIAFTTATGEVFVCTERSARNMAYQGFTEVEGKINVLLR 431
E ++ ++ +A +++Q + +I V+
Sbjct: 251 --------------------KAKVRRKDKEETWIVSKEAAYKLSFQ-----DREIEVIEE 285
Query: 432 LTGQVCI 438
G+ I
Sbjct: 286 FKGEKLI 292
Score = 189 bits (482), Expect = 5e-49
Identities = 57/233 (24%), Positives = 95/233 (40%), Gaps = 38/233 (16%)
Query: 1209 GKDLIQNHLTFFIYIHTAIWGDEPEMWPRGIRANGHLLLNSAKMSKSEGNFLTLTEAVKK 1268
GKDLI NHLTFFI+ H AI+ +E WP+GI NG L KMSKS+GN L +A+++
Sbjct: 610 GKDLIPNHLTFFIFNHVAIFREEH--WPKGIAVNGFGTLEGQKMSKSKGNVLNFIDAIEE 667
Query: 1269 FSADGMRLCLADSGDSVEDANFVESMADAAVKKFSADGMRLCLADSGDSVEDANFVESMA 1328
AD +RL + + D ++
Sbjct: 668 NGADVVRLYIMSLAEHDSDFDWRRKEVGKL------------------------------ 697
Query: 1329 DAGILRLYTFIEWVKEILATQSTLRTGSQDSFNDKVFLSEMNLKIKETEDHYTKMLFKEA 1388
++ F E + + + ++ + D+ L +N IKET + + + A
Sbjct: 698 ---RKQIERFYELISQF--AEYEVKGNVELKDIDRWMLHRLNKAIKETTNALEEFRTRTA 752
Query: 1389 LRTGFFELQAARDKYRELT-AAEGGMHRTLVLRFVEVQALLLCPVCPHVAEHV 1440
++ F+ + Y T + R ++ +V L+ P PH+ E +
Sbjct: 753 VQWAFYSIMNDLRWYLRRTEGRDDEAKRYVLRTLADVWVRLMAPFTPHICEEL 805
Score = 172 bits (438), Expect = 1e-43
Identities = 71/167 (42%), Positives = 96/167 (57%), Gaps = 13/167 (7%)
Query: 439 RSGDECVVALC-DQWYLDYGEPTWKAAAEQCLANMNTYHDEVRRNFGASLNWLHEYACSR 497
R G+ V+ + DQW++DYG P WK A + L M + R F A ++WL + AC+R
Sbjct: 451 RFGNRAVIKIIHDQWFIDYGNPEWKEKARKALERMKILPETRRAQFEAIIDWLDKKACAR 510
Query: 498 TYGLGTKLPWDEQWLIESLSDSTIYMAYYTVAHLLQGGTFRGENGNALNIKAEDLTPEVW 557
GLGT LPWD +W+IESLSDSTIYMAYYT++ + G + E LTPE +
Sbjct: 511 KIGLGTPLPWDPEWVIESLSDSTIYMAYYTISRHINKLRQEG------KLDPEKLTPEFF 564
Query: 558 DYVFFKS------APFPPKCRVPKAKLDIMRREFQYWYPVDLRCSGK 598
DY+F + K +P + M+ EF+YWYP+D RCSGK
Sbjct: 565 DYIFLEEFSEDKEKELEKKTGIPAEIIHEMKEEFEYWYPLDWRCSGK 611
Score = 125 bits (316), Expect = 4e-29
Identities = 29/175 (16%), Positives = 65/175 (37%), Gaps = 24/175 (13%)
Query: 1441 EMNLKIKETEDHYTKMLFKEALRTGFFELQAARDKYRELT-AAEGGMHRTLVLRFVEVQA 1499
+N IKET + + + A++ F+ + Y T + R ++ +V
Sbjct: 732 RLNKAIKETTNALEEFRTRTAVQWAFYSIMNDLRWYLRRTEGRDDEAKRYVLRTLADVWV 791
Query: 1500 LLLCPVCPHVAEHVYQLLGKKGSIVKARWPE--GGPIDDILVRSSSYLMEAAHAFRLQVK 1557
L+ P PH+ E +++ LG +G + A+WPE ++ + ++ +
Sbjct: 792 RLMAPFTPHICEELWEKLGGEGFVSLAKWPEPVEEWWNETIEAEEEFIRSVMEDIK---- 847
Query: 1558 NHILTASKKKGKKVGGGGVGLVEKPTHATVWVAKTFPPWQSIVLTTMKQMMEVRE 1612
I+ +K + A ++ A W+ V + + + +
Sbjct: 848 -EIIEVAKIE-------------NAKRAYIYTA---EDWKWKVAEVVSEKRDFKS 885
Score = 48.8 bits (116), Expect = 1e-05
Identities = 22/38 (57%), Positives = 28/38 (73%)
Query: 601 TKLPWDEQWLIESLSDSTIYMAYYTVAHLLQGGTFRGE 638
T LPWD +W+IESLSDSTIYMAYYT++ + G+
Sbjct: 516 TPLPWDPEWVIESLSDSTIYMAYYTISRHINKLRQEGK 553
>1wkb_A Leucyl-tRNA synthetase; leucine, aminoacyl-tRNA, editing, amino acid,
aminoacylation, trnaLeu, structural genomics; 2.05A
{Pyrococcus horikoshii}
Length = 810
Score = 376 bits (968), Expect = e-113
Identities = 147/561 (26%), Positives = 235/561 (41%), Gaps = 108/561 (19%)
Query: 652 QVLPYDPVPIIQVPEYGNLCAVTVYEKLKIQSQNDKDKLQEAKELVYLKGFYDGIMLVGE 711
V + +I++ YG+ AV KL I+SQ DK+KL++A + +Y ++ GI V
Sbjct: 355 IVENITYISLIKLEGYGDFPAVEEVNKLGIKSQKDKEKLEQATKTIYKAEYHKGIFKVPP 414
Query: 712 FKGKKVQEVKKLLQKKIDIIGVALKAPVTSHSVIYTLPMLSIREDKGTGIVTSVPSDSPD 771
++GK VQEVK+ + K++ G+A + +
Sbjct: 415 YEGKPVQEVKEAIAKEMLEKGIAEIMYEFAEKNVI------------------------- 449
Query: 772 DYAALVDLKKKPPFREKYHVTDEMCVVALC-DQWYLDYGEPTWKAAAEQCLANMNTYHDE 830
+ V+ + DQW++DYG P WK A + L M +
Sbjct: 450 -----------------SRFGNR-AVIKIIHDQWFIDYGNPEWKEKARKALERMKILPET 491
Query: 831 VRRNFGASLNWLHEYACSRTYGLGTKLPWDEQWLIESLSDSTIYMAYYTVAHLLQGGTFR 890
R F A ++WL + AC+R GLGT LPWD +W+IESLSDSTIYMAYYT++ +
Sbjct: 492 RRAQFEAIIDWLDKKACARKIGLGTPLPWDPEWVIESLSDSTIYMAYYTISRHINKLRQE 551
Query: 891 GENGNALNIKAEDLTPEVWDYVFFKAAPFPPKCRVPKAKLDIMRREFQYWYPVDLRCSGK 950
G + E LTPE +DY+F + + +
Sbjct: 552 G------KLDPEKLTPEFFDYIFLEEFSED----------------KEKELEKKTGIPAE 589
Query: 951 DLIQNHLTFFIYIHTAIWGDEPEMW-PRGIRANGHLLLNSAKDLIQNHLTFFIYKLFSDL 1009
+ + +E E W P R +G DL
Sbjct: 590 IIHEMK-------------EEFEYWYPLDWRCSG-----------------------KDL 613
Query: 1010 IQNHLTFFIYIHTAIWGDEPEMWPRGIRANGHLLLNSAKMSKSEGNFLTLTEAVKKFSAD 1069
I NHLTFFI+ H AI+ +E WP+GI NG L KMSKS+GN L +A+++ AD
Sbjct: 614 IPNHLTFFIFNHVAIFREEH--WPKGIAVNGFGTLEGQKMSKSKGNVLNFIDAIEENGAD 671
Query: 1070 GMRLCLADSGDSVEDANFVESMADAGILRLYTFIEWVKEILATQSTLRTGSQDSFNDKVF 1129
+RL + + D ++ ++ F E + + + ++ + D+
Sbjct: 672 VVRLYIMSLAEHDSDFDWRRKEVGKLRKQIERFYELISQF--AEYEVKGNVELKDIDRWM 729
Query: 1130 LSEMNLKIKETEDHYTKMLFKEALRTGFFELQAARDKYRELT-AAEGGMHRTLVLRFVEV 1188
L +N IKET + + + A++ F+ + Y T + R ++ +V
Sbjct: 730 LHRLNKAIKETTNALEEFRTRTAVQWAFYSIMNDLRWYLRRTEGRDDEAKRYVLRTLADV 789
Query: 1189 QALLLCPVCPHVAEHVYQLLG 1209
L+ P PH+ E +++ LG
Sbjct: 790 WVRLMAPFTPHICEELWEKLG 810
Score = 301 bits (772), Expect = 1e-86
Identities = 127/690 (18%), Positives = 217/690 (31%), Gaps = 205/690 (29%)
Query: 12 LQKIEKEVQEEWDREKIYEETVGDAVRSSPDDKFFTTFPFPYMNGRLHLGHTFSLSKFRE 71
+ IE++ Q+ W KI+E + D
Sbjct: 6 FKAIEEKWQKRWLEAKIFEPNIRD------------------------------------ 29
Query: 72 KIYEETVGDAVRSSPDDKFFTTFPFPYMNGRLHLGHTFSLSKCEFSVRFNRLKGKRVLFP 131
+ KF+ T FPY++G LH+GH + + + RF R++G VLFP
Sbjct: 30 ------------KPKEKKFYITVAFPYLSGHLHVGHARTYTIPDVIARFKRMQGYNVLFP 77
Query: 132 FGFHCTGMPIKACADKLKREMESFGFPPQFPSEDTEPQTDKDDDDPVIKDKSKGKKSKAV 191
+H TG PI A+++K
Sbjct: 78 MAWHITGSPIVGIAERIKNRDP-------------------------------------- 99
Query: 192 AKAGSAKYQWQIMQSLGLEDDEIRKFADASHWLDHFPPLAVQDLRSIGIHVDWRRTFITT 251
K W + ++ + F D + + +F A + G VDW R F TT
Sbjct: 100 ------KTIWIYRDVYKVPEEILWTFEDPINIVKYFMKAAKETFIRAGFSVDWSREFYTT 153
Query: 252 DSNPFFDSFVRWQFMRLRDRHKIKYGKRYTVFSPRDNQPCMDHDRASGEGVGPQEYTLIK 311
P F F+ WQF +L+++ I G + P P DHD GE V +Y +IK
Sbjct: 154 SLFPPFSKFIEWQFWKLKEKGYIVKGAHRVRWDPVVGTPLGDHDLMEGEDVPILDYIIIK 213
Query: 312 MRLVKPYPAKLCCLDSKPVFLVAATLRPETMYGQTNAWVRPDMAYIALSCLDSKPVFLVA 371
L + + + ++L AATLRPET+YG TN WV P+ Y+
Sbjct: 214 FELRE---------NGEVIYLPAATLRPETVYGVTNMWVNPNATYV-------------- 250
Query: 372 ATLRPETMYGQTNAWVRPDMAYIAFTTATGEVFVCTERSARNMAYQGFTEVEGKINVLLR 431
E ++ ++ +A +++Q + +I V+
Sbjct: 251 --------------------KAKVRRKDKEETWIVSKEAAYKLSFQ-----DREIEVIEE 285
Query: 432 LTGQVCIR-------SGDECVVALCDQWYLDYGEPTWKAAAEQCLANMNTYHD-----EV 479
G+ I SGDE ++ + D + + D E+
Sbjct: 286 FKGEKLIGKYVRNPVSGDEVIILPAEFVDPDNATGVVMSVPAHAPFDHVALEDLKRETEI 345
Query: 480 RRNFGASLNWLHE-----YACSRTYGLGTKLPWDEQWLIESLSDST-------IYMAYYT 527
+ + YG + + I+S D
Sbjct: 346 LEKYDIDPRIVENITYISLIKLEGYGDFPAVEEVNKLGIKSQKDKEKLEQATKTIYKAEY 405
Query: 528 VAHLLQGGTFRGEN-GNALNIKAEDLTPEVWDYVFFKSAPFPPKCR-------------- 572
+ + + G+ A+++ + + ++ A R
Sbjct: 406 HKGIFKVPPYEGKPVQEVKEAIAKEMLEKGIAEIMYEFAEKNVISRFGNRAVIKIIHDQW 465
Query: 573 -VPKAKLDIMRREFQY-----WYPVDLRCSGKVSTKLPWDEQWLI--------------- 611
+ + + + P R + + W ++
Sbjct: 466 FIDYGNPEWKEKARKALERMKILPETRR--AQFEAIIDWLDKKACARKIGLGTPLPWDPE 523
Query: 612 ---ESLSDSTIYMAYYTVAHLLQGGTFRGE 638
ESLSDSTIYMAYYT++ + G+
Sbjct: 524 WVIESLSDSTIYMAYYTISRHINKLRQEGK 553
Score = 195 bits (498), Expect = 2e-51
Identities = 57/233 (24%), Positives = 95/233 (40%), Gaps = 38/233 (16%)
Query: 1209 GKDLIQNHLTFFIYIHTAIWGDEPEMWPRGIRANGHLLLNSAKMSKSEGNFLTLTEAVKK 1268
GKDLI NHLTFFI+ H AI+ +E WP+GI NG L KMSKS+GN L +A+++
Sbjct: 610 GKDLIPNHLTFFIFNHVAIFREEH--WPKGIAVNGFGTLEGQKMSKSKGNVLNFIDAIEE 667
Query: 1269 FSADGMRLCLADSGDSVEDANFVESMADAAVKKFSADGMRLCLADSGDSVEDANFVESMA 1328
AD +RL + + D ++
Sbjct: 668 NGADVVRLYIMSLAEHDSDFDWRRKEVGKL------------------------------ 697
Query: 1329 DAGILRLYTFIEWVKEILATQSTLRTGSQDSFNDKVFLSEMNLKIKETEDHYTKMLFKEA 1388
++ F E + + + ++ + D+ L +N IKET + + + A
Sbjct: 698 ---RKQIERFYELISQFA--EYEVKGNVELKDIDRWMLHRLNKAIKETTNALEEFRTRTA 752
Query: 1389 LRTGFFELQAARDKYRELT-AAEGGMHRTLVLRFVEVQALLLCPVCPHVAEHV 1440
++ F+ + Y T + R ++ +V L+ P PH+ E +
Sbjct: 753 VQWAFYSIMNDLRWYLRRTEGRDDEAKRYVLRTLADVWVRLMAPFTPHICEEL 805
Score = 174 bits (443), Expect = 1e-44
Identities = 71/167 (42%), Positives = 96/167 (57%), Gaps = 13/167 (7%)
Query: 439 RSGDECVVALC-DQWYLDYGEPTWKAAAEQCLANMNTYHDEVRRNFGASLNWLHEYACSR 497
R G+ V+ + DQW++DYG P WK A + L M + R F A ++WL + AC+R
Sbjct: 451 RFGNRAVIKIIHDQWFIDYGNPEWKEKARKALERMKILPETRRAQFEAIIDWLDKKACAR 510
Query: 498 TYGLGTKLPWDEQWLIESLSDSTIYMAYYTVAHLLQGGTFRGENGNALNIKAEDLTPEVW 557
GLGT LPWD +W+IESLSDSTIYMAYYT++ + G + E LTPE +
Sbjct: 511 KIGLGTPLPWDPEWVIESLSDSTIYMAYYTISRHINKLRQEG------KLDPEKLTPEFF 564
Query: 558 DYVFFKSA------PFPPKCRVPKAKLDIMRREFQYWYPVDLRCSGK 598
DY+F + K +P + M+ EF+YWYP+D RCSGK
Sbjct: 565 DYIFLEEFSEDKEKELEKKTGIPAEIIHEMKEEFEYWYPLDWRCSGK 611
Score = 91.6 bits (227), Expect = 1e-18
Identities = 18/79 (22%), Positives = 35/79 (44%), Gaps = 1/79 (1%)
Query: 1441 EMNLKIKETEDHYTKMLFKEALRTGFFELQAARDKYRELT-AAEGGMHRTLVLRFVEVQA 1499
+N IKET + + + A++ F+ + Y T + R ++ +V
Sbjct: 732 RLNKAIKETTNALEEFRTRTAVQWAFYSIMNDLRWYLRRTEGRDDEAKRYVLRTLADVWV 791
Query: 1500 LLLCPVCPHVAEHVYQLLG 1518
L+ P PH+ E +++ LG
Sbjct: 792 RLMAPFTPHICEELWEKLG 810
Score = 71.1 bits (174), Expect = 2e-12
Identities = 25/84 (29%), Positives = 47/84 (55%), Gaps = 3/84 (3%)
Query: 712 FKGKKVQEVKKLLQKKIDIIGVALKAPVTSHSVIYTLPMLSIREDKGTGIVTSVPSDSPD 771
F+ ++++ +++ K +IG ++ PV+ + LP + D TG+V SVP+ +P
Sbjct: 275 FQDREIEVIEEF--KGEKLIGKYVRNPVSGDE-VIILPAEFVDPDNATGVVMSVPAHAPF 331
Query: 772 DYAALVDLKKKPPFREKYHVTDEM 795
D+ AL DLK++ EKY + +
Sbjct: 332 DHVALEDLKRETEILEKYDIDPRI 355
>3pz6_A Leurs, leucyl-tRNA synthetase; editing domain, glleurs_CP1, ligase;
2.60A {Giardia intestinalis}
Length = 311
Score = 119 bits (299), Expect = 2e-29
Identities = 45/152 (29%), Positives = 72/152 (47%), Gaps = 11/152 (7%)
Query: 297 ASGEGVGPQEYTLIKMRLV-------KPYPAKLCCLDSKPVFLVAATLRPETMYGQTNAW 349
SGEGV PQEY IK+ L+ + + + + + + +
Sbjct: 1 GSGEGVQPQEYIGIKLELINYTTLLEEQREQQQEGEEEGDGMDDSLAEKLNIKLPRFYSN 60
Query: 350 VRPDMAYIALSC--LDSKPVFLVAATLRPETMYGQTNAWVRPDMAYIAFTTATGEVFVCT 407
+ + L +D+ V+L+AATLRPETM GQTN WV P Y A+ EV + +
Sbjct: 61 PKNKAIFDQLWENQVDNAKVYLLAATLRPETMVGQTNCWVLPTGRYGAYYINKDEVIIVS 120
Query: 408 ERSARNMAYQGFTEVE--GKINVLLRLTGQVC 437
E +A NMA+QG + G+++ + ++G
Sbjct: 121 EHAAVNMAHQGLNNNKPFGELDFISEISGSDL 152
Score = 103 bits (257), Expect = 6e-24
Identities = 31/83 (37%), Positives = 51/83 (61%)
Query: 653 VLPYDPVPIIQVPEYGNLCAVTVYEKLKIQSQNDKDKLQEAKELVYLKGFYDGIMLVGEF 712
+ PY P+PII++P+ G L AV + E+ + S +D+ KL + KE+ Y KGFY GIM +G F
Sbjct: 220 LEPYSPLPIIEIPDIGTLSAVRLCEESNVSSLHDRAKLTQIKEICYTKGFYTGIMKMGPF 279
Query: 713 KGKKVQEVKKLLQKKIDIIGVAL 735
G+ V++ K+ + + +
Sbjct: 280 AGQSVKDCKQSCRDLLVQNNQCI 302
Score = 84.4 bits (208), Expect = 2e-17
Identities = 33/106 (31%), Positives = 57/106 (53%), Gaps = 2/106 (1%)
Query: 694 KELVYLKGFYDGIMLVGEFKGKKVQEVKKLLQKK-IDIIGVALKAPVTSHSVIYTLPMLS 752
+ ++ + + G K E+ + + D++ ++AP++ + I+ LP+ +
Sbjct: 115 EVIIVSEHAAVNMAHQGLNNNKPFGELDFISEISGSDLLLATVRAPLSPYEQIFVLPLET 174
Query: 753 IREDKGTGIVTSVPSDSPDDYAALVDLKKK-PPFREKYHVTDEMCV 797
I+ DKGTGIVTSVPSD+PDDYA D+ + EKY V + +
Sbjct: 175 IKMDKGTGIVTSVPSDAPDDYACYKDILENRNGIAEKYGVDVGLML 220
>2wfd_A Leucyl-tRNA synthetase, cytoplasmic; aminoacyl-tRNA synthetase,
phosphoprotein, editing domain, nucleotide-binding,
hydrolysis of MIS-charged trnas; 3.25A {Homo sapiens}
Length = 252
Score = 107 bits (269), Expect = 6e-26
Identities = 59/135 (43%), Positives = 80/135 (59%), Gaps = 37/135 (27%)
Query: 301 GVGPQEYTLIKMRLVKPYPAKLCCLDSKPVFLVAATLRPETMYGQTNAWVRPDMAYIALS 360
+GPQEYTL+K+++++PYP+KL S
Sbjct: 1 AMGPQEYTLLKLKVLEPYPSKL-------------------------------------S 23
Query: 361 CLDSKPVFLVAATLRPETMYGQTNAWVRPDMAYIAFTTATGEVFVCTERSARNMAYQGFT 420
L K +FLVAATLRPETM+GQTN WVRPDM YI F T G++F+CT+++ARNM+YQGFT
Sbjct: 24 GLKGKNIFLVAATLRPETMFGQTNCWVRPDMKYIGFETVNGDIFICTQKAARNMSYQGFT 83
Query: 421 EVEGKINVLLRLTGQ 435
+ G + V+ L G+
Sbjct: 84 KDNGVVPVVKELMGE 98
Score = 107 bits (269), Expect = 6e-26
Identities = 54/83 (65%), Positives = 71/83 (85%)
Query: 653 VLPYDPVPIIQVPEYGNLCAVTVYEKLKIQSQNDKDKLQEAKELVYLKGFYDGIMLVGEF 712
VLP++PVP+I++P +GNL AVT+ ++LKIQSQND++KL EAKE +YLKGFY+GIMLV F
Sbjct: 166 VLPFEPVPVIEIPGFGNLSAVTICDELKIQSQNDREKLAEAKEKIYLKGFYEGIMLVDGF 225
Query: 713 KGKKVQEVKKLLQKKIDIIGVAL 735
KG+KVQ+VKK +QKK+ G AL
Sbjct: 226 KGQKVQDVKKTIQKKMIDAGDAL 248
Score = 87.0 bits (215), Expect = 9e-19
Identities = 58/134 (43%), Positives = 73/134 (54%), Gaps = 10/134 (7%)
Query: 665 PE--YGNL-CAVTVYEKLKIQSQNDKDKLQEAKELVYLKGFYDGIMLVGEFKGKKVQEVK 721
PE +G C V K + D ++ Y G V VK
Sbjct: 39 PETMFGQTNCWVRPDMKYIGFETVNGDIFICTQKAA-RNMSYQGF----TKDNGVVPVVK 93
Query: 722 KLLQKKIDIIGVALKAPVTSHSVIYTLPMLSIREDKGTGIVTSVPSDSPDDYAALVDLKK 781
+L +I+G +L AP+TS+ VIY LPML+I+EDKGTG+VTSVPSDSPDD AAL DLKK
Sbjct: 94 EL--MGEEILGASLSAPLTSYKVIYVLPMLTIKEDKGTGVVTSVPSDSPDDIAALRDLKK 151
Query: 782 KPPFREKYHVTDEM 795
K R KY + D+M
Sbjct: 152 KQALRAKYGIRDDM 165
>2wfg_A Cytosolic leucyl-tRNA synthetase; ligase, editing domain,
hydrolysis of MIS-charged trnas, benzoxaborole,
anti-fungal; HET: ZZB; 2.20A {Candida albicans} PDB:
2wfe_A*
Length = 261
Score = 100 bits (250), Expect = 2e-23
Identities = 37/97 (38%), Positives = 55/97 (56%), Gaps = 2/97 (2%)
Query: 649 IVFQVLPYDPVPIIQVPEYGNLCAVTVYEKLKIQSQNDKDKLQEAKELVYLKGFYDGIML 708
I + D VPI+ +YG+ CA + LKIQS D +L AKEL Y +GFY+G ML
Sbjct: 161 IEKDWVQTDIVPIVHTEKYGDKCAEFLVNDLKIQSPKDSVQLANAKELAYKEGFYNGTML 220
Query: 709 VGEFKGKKVQEVKKLLQKKIDIIGVALK--APVTSHS 743
+G++KG KV++ K +++ + G+A P H
Sbjct: 221 IGKYKGDKVEDAKPKVKQDLIDEGLAFVYNEPELEHH 257
Score = 99.6 bits (248), Expect = 4e-23
Identities = 38/132 (28%), Positives = 52/132 (39%), Gaps = 30/132 (22%)
Query: 306 EYTLIKMRLVKPYPAKLCCLDSKPVFLVAATLRPETMYGQTNAWVRPDMAYIALSCLDSK 365
Y IK+RL P + +
Sbjct: 2 GYVGIKIRLTDVAPQAQELFKKE------------------------------SLDVKEN 31
Query: 366 PVFLVAATLRPETMYGQTNAWVRPDMAYIAFTTATGEVFVCTERSARNMAYQGFTEVEGK 425
V+LVAATLRPETMYGQT +V P + Y F G+ F+ TER+ +NM++Q T G
Sbjct: 32 KVYLVAATLRPETMYGQTCCFVSPKIDYGVFDAGNGDYFITTERAFKNMSFQNLTPKRGY 91
Query: 426 INVLLRLTGQVC 437
L + G+
Sbjct: 92 YKPLFTINGKTL 103
Score = 77.3 bits (190), Expect = 2e-15
Identities = 32/114 (28%), Positives = 49/114 (42%), Gaps = 5/114 (4%)
Query: 708 LVGEFKGKKVQEVKKLLQKK-IDIIGVALKAPVTSHSVIYTLPMLSIREDKGTGIVTSVP 766
+ + K K L +IG + AP + + LPM ++ KGTG+VT VP
Sbjct: 80 MSFQNLTPKRGYYKPLFTINGKTLIGSRIDAPYAVNKNLRVLPMETVLATKGTGVVTCVP 139
Query: 767 SDSPDDYAALVDLKKKPPFREKYHVTDEMCVVALCDQWYLD-YGEPTWKAAAEQ 819
SDSPDD+ DL KP E Y + + + + + YG+ +
Sbjct: 140 SDSPDDFVTTRDLANKP---EYYGIEKDWVQTDIVPIVHTEKYGDKCAEFLVND 190
>3h99_A Methionyl-tRNA synthetase; rossmann fold, aminoacyl-tRNA synthetase,
ATP-binding, ligas binding, nucleotide-binding, protein
biosynthesis; HET: CIT; 1.40A {Escherichia coli} PDB:
3h97_A* 3h9b_A* 1f4l_A 3h9c_A* 1pfv_A* 1pfu_A 1p7p_A*
1pfw_A* 1pfy_A* 1pg0_A* 1pg2_A* 1qqt_A 1mea_A 1med_A
Length = 560
Score = 63.4 bits (155), Expect = 4e-10
Identities = 43/229 (18%), Positives = 78/229 (34%), Gaps = 50/229 (21%)
Query: 1018 IYIHTAIWGDEPEM-----W--PRGIRANGHLLLNSAKMSKSEGNFLTLTEAVKKFSADG 1070
+Y + W P M + P + +G++ +N AKMSKS G F+ + + F AD
Sbjct: 311 VYFLSLFW---PAMLEGSNFRKPSNLFVHGYVTVNGAKMSKSRGTFIKASTWLNHFDADS 367
Query: 1071 MRLCL-ADSGDSVEDANFVESMAD---------AGIL-----RLYTFIE-WVKEILATQS 1114
+R A ++D + ++ D + R FI +LA++
Sbjct: 368 LRYYYTAKLSSRIDDIDL--NLEDFVQRVNADIVNKVVNLASRNAGFINKRFDGVLASEL 425
Query: 1115 TLRTGSQDSFNDKVFLSEMNLKIKETEDHYTKMLFKEALRTGFFELQAARDKY------- 1167
D + + + F +A+R L ++Y
Sbjct: 426 A----------DPQLYKTFTDAAEVIGEAWESREFGKAVRE-IMALADLANRYVDEQAPW 474
Query: 1168 ----RELTAAEGGMHRTLVLRFVEVQALLLCPVCPHVAEHVYQLLGKDL 1212
+E A+ ++ + V L PV P + E L +L
Sbjct: 475 VVAKQEGRDADLQAICSMGINLFRVLMTYLKPVLPKLTERAEAFLNTEL 523
Score = 56.5 bits (137), Expect = 6e-08
Identities = 25/95 (26%), Positives = 42/95 (44%), Gaps = 19/95 (20%)
Query: 1204 VYQLLGKDLIQNHLTFFIYIHTAIWGDEPEM-----W--PRGIRANGHLLLNSAKMSKSE 1256
+Y +GKD +Y + W P M + P + +G++ +N AKMSKS
Sbjct: 302 LYHFIGKD---I-----VYFLSLFW---PAMLEGSNFRKPSNLFVHGYVTVNGAKMSKSR 350
Query: 1257 GNFLTLTEAVKKFSADGMRLCL-ADSGDSVEDANF 1290
G F+ + + F AD +R A ++D +
Sbjct: 351 GTFIKASTWLNHFDADSLRYYYTAKLSSRIDDIDL 385
Score = 38.8 bits (91), Expect = 0.017
Identities = 21/61 (34%), Positives = 28/61 (45%)
Query: 89 KFFTTFPFPYMNGRLHLGHTFSLSKCEFSVRFNRLKGKRVLFPFGFHCTGMPIKACADKL 148
K T PY NG +HLGH + + VR+ R++G V F G PI A +L
Sbjct: 19 KILVTCASPYANGSIHLGHMLEHIQADVWVRYQRMRGHEVNFICADDAHGTPIMLKAQQL 78
Query: 149 K 149
Sbjct: 79 G 79
>1rqg_A Methionyl-tRNA synthetase; translation, dimerization, ligase; 2.90A
{Pyrococcus abyssi} SCOP: a.27.1.1 c.26.1.1 g.41.1.1
Length = 722
Score = 62.4 bits (152), Expect = 1e-09
Identities = 46/231 (19%), Positives = 76/231 (32%), Gaps = 45/231 (19%)
Query: 1018 IYIHTAIW------------GDEPEMW--PRGIRANGHLLLNSAKMSKSEGNFLTLTEAV 1063
I H W + W P I AN +L L K S S + + E +
Sbjct: 300 IPFHAIFWPAFLMAYGKYKDEEVEAEWNLPYDIPANEYLTLEGKKFSTSRNWAIWVHEFL 359
Query: 1064 KKFSADGMRLCLADSGDSVEDANFV-ESMAD------AGIL-----RLYTFIEWVKEILA 1111
F AD +R L D++F L R TF+ +
Sbjct: 360 DVFPADYLRYYLTTIMPETRDSDFSFSDFKVRINEELVNNLGNFVHRALTFVN--RYF-- 415
Query: 1112 TQSTLRTGSQDSFNDKVFLSEMNLKIKETEDHYTKMLFKEALRTGFFELQAARDKY---- 1167
+ + D+ L E+ KE + FK+AL+ L + ++Y
Sbjct: 416 -DGVVPERGELDELDREALEEIEKAFKEVGELIMNYRFKDALKR-VMSLASFGNRYFDHK 473
Query: 1168 -------RELTAAEGGMHRTLVLRFVEVQALLLCPVCPHVAEHVYQLLGKD 1211
+ ++ +L + V+ +LL P P +E ++ LL D
Sbjct: 474 QPWKTAKEDKVRTGTTVNISLQI--VKALGILLEPFLPDASEKIWHLLNLD 522
Score = 58.6 bits (142), Expect = 1e-08
Identities = 53/266 (19%), Positives = 92/266 (34%), Gaps = 48/266 (18%)
Query: 1204 VYQLLGKDLIQNHLTFF----IYIHTAIWGDEPEMW--PRGIRANGHLLLNSAKMSKSEG 1257
V +GKD I H F+ + + W P I AN +L L K S S
Sbjct: 291 VIHFIGKDNIPFHAIFWPAFLMAYGKYKDEEVEAEWNLPYDIPANEYLTLEGKKFSTSRN 350
Query: 1258 NFLTLTEAVKKFSADGMRLCLADSGDSVEDANFVESMADAAVKKFSADGMRLCLADS-GD 1316
+ + E + F AD +R L D++F + + + L ++ G
Sbjct: 351 WAIWVHEFLDVFPADYLRYYLTTIMPETRDSDFSF---SDFKVRINEE-----LVNNLG- 401
Query: 1317 SVEDANFVESMADAGILRLYTFIEWVKEILATQSTLRTGSQDSFNDKVFLSEMNLKIKET 1376
NFV R TF+ + + + D+ L E+ KE
Sbjct: 402 -----NFVH--------RALTFVN--RYF---DGVVPERGELDELDREALEEIEKAFKEV 443
Query: 1377 EDHYTKMLFKEALRTGFFELQAARDKY-----------RELTAAEGGMHRTLVLRFVEVQ 1425
+ FK+AL+ L + ++Y + ++ +L + V+
Sbjct: 444 GELIMNYRFKDALKR-VMSLASFGNRYFDHKQPWKTAKEDKVRTGTTVNISLQI--VKAL 500
Query: 1426 ALLLCPVCPHVAEHVEMNLKIKETED 1451
+LL P P +E + L + E +
Sbjct: 501 GILLEPFLPDASEKIWHLLNLDEVKR 526
Score = 42.4 bits (100), Expect = 0.001
Identities = 23/63 (36%), Positives = 30/63 (47%), Gaps = 7/63 (11%)
Query: 89 KFFTTFPFPYMNGRLHLGHTFSLSKCEFS----VRFNRLKGKRVLFPFGFHCTGMPIKAC 144
++ T PY NG +H GH L+ VR+ RLKG+ V+F G G PI
Sbjct: 3 RYMVTSALPYANGPIHAGH---LAGAYLPADIFVRYLRLKGEDVVFICGTDEHGTPISFR 59
Query: 145 ADK 147
A K
Sbjct: 60 ALK 62
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 62.4 bits (151), Expect = 1e-09
Identities = 109/735 (14%), Positives = 197/735 (26%), Gaps = 308/735 (41%)
Query: 925 VPKA---KLDIMRREFQYWYPVDLRCSGKDLIQNHLTFFIYIHTAIWGDEPEMWPRGIRA 981
VP A ++ +F P D DEP
Sbjct: 22 VPTASFFIASQLQEQFNKILPEPTEGFAAD------------------DEPT-------- 55
Query: 982 NGHLLLNSAKDLIQNHLTFFIYKL-------FSDLIQNHLTFFIYIHTAIWGDEPEMWPR 1034
+ +L+ L + + F ++ LT F + + G++
Sbjct: 56 -------TPAELVGKFLGYVSSLVEPSKVGQFDQVLNLCLTEFE--NCYLEGND------ 100
Query: 1035 GIRANGHLLLNSAKMSKSEGNFLTLTEAVKK--FSADGMRLCLADSGDSVEDANFVESMA 1092
I H L AK+ + L T+ + K +A R+ D ++ +
Sbjct: 101 -I----HALA--AKLLQENDTTLVKTKELIKNYITA---RIMAKRPFDKKSNSALFRA-V 149
Query: 1093 DAGILRLYT-FIEWVKEILATQSTLRTGSQDSFNDKVFLSEMNLKIKETEDHYTKMLFKE 1151
G +L F G Q + +D Y F+E
Sbjct: 150 GEGNAQLVAIF----------------GGQGNTDD-----------------Y----FEE 172
Query: 1152 ALRTGFFELQAARDKYRELTAAEGGMHRTLVLRFVEVQALLLCPV--CPHVAEHVYQLLG 1209
LR +L Y+ + LV ++ A L + AE V+ G
Sbjct: 173 -LR----DL------YQ--------TYHVLVGDLIKFSAETLSELIRTTLDAEKVFT-QG 212
Query: 1210 KDLIQNHLTFFIYIHTAIWGDEPEMWPRGIRANGHLLLNSAKMSKSEGNFLTLTEA---- 1265
++++ W + P P L S +S + + +
Sbjct: 213 LNILE-------------WLENPSNTP------DKDYLLSIPIS---CPLIGVIQLAHYV 250
Query: 1266 ----VKKFSADGMRLCLADSGDSVEDANFVESMADAAVKKFSADGMRLCLADSGDSVEDA 1321
+ F+ +R L G + V ++A A DS +S
Sbjct: 251 VTAKLLGFTPGELRSYL--KGATGHSQGLVTAVAIAE-------------TDSWES---- 291
Query: 1322 NFVESMADAGILRLYTFIEWVKEILATQSTLRTG--SQDSFNDKVFLSEMNLKIKETEDH 1379
F S+ A + + FI G +++ + + ++++ ++
Sbjct: 292 -FFVSVRKA--ITVLFFI---------------GVRCYEAYPNTSLPPSI---LEDSLEN 330
Query: 1380 Y----TKMLFKEALRTGFFELQAARDKYRELTAAEGGMHRTLVLRFVEVQALLLCPVCPH 1435
+ ML ++ + + V +V H
Sbjct: 331 NEGVPSPML---SIS---------------------NLTQEQVQDYVNK-------TNSH 359
Query: 1436 V--AEHVEMNLKIKETEDHYTKMLFKEALRTGF-FELQAARDKYRELTAAEG-GMHRT-- 1489
+ + VE++L + + +G L R+ A G R
Sbjct: 360 LPAGKQVEISLVN--GAKNLV--V------SGPPQSLYGLNLTLRKAKAPSGLDQSRIPF 409
Query: 1490 ------LVLRFVEVQA----LLLCPVCPHVAEH----------------VYQ------LL 1517
RF+ V + LL P + + VY L
Sbjct: 410 SERKLKFSNRFLPVASPFHSHLLVPASDLINKDLVKNNVSFNAKDIQIPVYDTFDGSDLR 469
Query: 1518 GKKGSIVKARWPEGGPIDDILVRSSSYLMEAAHAFRLQVKNHI-------------LTAS 1564
GSI + I D ++R E F+ HI LT
Sbjct: 470 VLSGSISER-------IVDCIIRLPVK-WETTTQFKA---THILDFGPGGASGLGVLTHR 518
Query: 1565 KKKGKKVGGGGVGLV 1579
K G GV ++
Sbjct: 519 NKDGT-----GVRVI 528
Score = 52.4 bits (125), Expect = 1e-06
Identities = 49/311 (15%), Positives = 101/311 (32%), Gaps = 93/311 (29%)
Query: 10 EYLQKIEKEVQEEWDREKIYEETVGDAVRSSPDDKFFTTFPFPYMNGRLHLGHTFSLSKF 69
+Y +E+++ + Y VGD ++ S + + ++ ++ ++
Sbjct: 168 DYF----EELRDLYQ---TYHVLVGDLIKFS--AETLSELIRTTLDAEKVFTQGLNILEW 218
Query: 70 REKIYEETVGDAVRSSPDDKFFTTFP--FPYMNGRLHLGH------TFSLSKCEFSVRFN 121
E ++PD + + P P + G + L H + E +
Sbjct: 219 LEN---------PSNTPDKDYLLSIPISCP-LIGVIQLAHYVVTAKLLGFTPGEL---RS 265
Query: 122 RLKGKRVLFPFGFHCTGMPIKACADKLKREMESF--------------GFPPQ--FPSED 165
LKG H G+ + A A ESF G +P+
Sbjct: 266 YLKGATG------HSQGL-VTAVAIAETDSWESFFVSVRKAITVLFFIGVRCYEAYPNTS 318
Query: 166 TEPQTDKDDDDPVIKDKSKGKKSKAVAKAGSAKYQWQIMQSL-GLEDDEIRKFADASHWL 224
P +D + ++G S M S+ L ++++ + + ++
Sbjct: 319 LPPSILEDS-----LENNEGVPSP--------------MLSISNLTQEQVQDYVNKTN-- 357
Query: 225 DHFPPLAVQDLRSIGIH-VDWRRTFITTDSNPFFDSFVRWQFMRLR--------DRHKIK 275
H P + + I V+ + + + P S + LR D+ +I
Sbjct: 358 SHLPAG-----KQVEISLVNGAKNLVVS-GPP--QSLYGLN-LTLRKAKAPSGLDQSRIP 408
Query: 276 YGKRYTVFSPR 286
+ +R FS R
Sbjct: 409 FSERKLKFSNR 419
Score = 47.4 bits (112), Expect = 5e-05
Identities = 100/677 (14%), Positives = 184/677 (27%), Gaps = 268/677 (39%)
Query: 371 AATLRPETM-YGQTNAWVRPDMAYIAFTTATGEVFVCTERSARNMAYQGFTEVEGKINVL 429
A + RP T+ +G T F+ ++ + F ++ L
Sbjct: 3 AYSTRPLTLSHGSLE---------HVLLVPTASFFIASQLQEQ------FNKI------L 41
Query: 430 LRLTGQVCIRSGDE--CVVALCDQWYLDY----GEPTWKAAAEQCLANMNTYHDEVRRNF 483
T + DE L + +L Y EP+ +Q L E +
Sbjct: 42 PEPTEGFA--ADDEPTTPAELVGK-FLGYVSSLVEPSKVGQFDQVLNLC---LTEFENCY 95
Query: 484 GASL--NWLHEYACSRTYGLGTKLPWDEQWLIESLSDSTIYMAYYTVAHLLQGGTFRGEN 541
L N +H A L + + + Y T A ++ F ++
Sbjct: 96 ---LEGNDIHALAAK--------LLQEND--TTLVKTKELIKNYIT-ARIMAKRPFDKKS 141
Query: 542 GNAL-------------------NIKA--EDL-------TPEVWDYVFFKSAPFPPKCRV 573
+AL N E+L V D + F + R
Sbjct: 142 NSALFRAVGEGNAQLVAIFGGQGNTDDYFEELRDLYQTYHVLVGDLIKFSAETLSELIRT 201
Query: 574 PKAKLDIMRREFQYWYP--VDLRCSGKVSTKLPWDEQWLIESLSD--STIYMAYYTVA-- 627
+ + + +++ +WL E+ S+ Y+ ++
Sbjct: 202 T--------LDAEKVFTQGLNIL-------------EWL-ENPSNTPDKDYLLSIPISCP 239
Query: 628 --HLLQGGTFRGENGNALNINCVIVFQVLPYDPVPIIQVPEYGNLCAVTVYEK-----LK 680
++Q + V+ ++L + P + L T + + +
Sbjct: 240 LIGVIQLAHY------------VVTAKLLGFTPGELRS-----YLKGATGHSQGLVTAVA 282
Query: 681 IQSQNDKDKLQEA--KELVYLKGFYDGIMLVGEFKGKKVQEV-------KKLLQKKIDII 731
I + + + K + L F+ G+ + E +L+ D +
Sbjct: 283 IAETDSWESFFVSVRKAITVL--FFIGV---------RCYEAYPNTSLPPSILE---DSL 328
Query: 732 GVALKAPVTSHSVIYTLPMLSIR-------EDKGTGIVTSVPSDSPDDYAALVDLKKKPP 784
P S PMLSI +D + +P+ +LV+
Sbjct: 329 ENNEGVP----S-----PMLSISNLTQEQVQDYVNKTNSHLPAGK-QVEISLVN------ 372
Query: 785 FREKYHVTDEMCVVALCDQWYLDYGEPTWKAAAEQCLANMNTYHDEVRRNFGASLNWLHE 844
+ VV+ G P Q L +N L +
Sbjct: 373 -------GAKNLVVS---------GPP-------QSLYGLNL--------------TLRK 395
Query: 845 YACSRTYGLG-TKLPWDEQWLIESLSDSTIYMAYYTVA-----HLLQGGTFRGENGNALN 898
GL +++P+ E+ L + VA HLL A +
Sbjct: 396 AKAPS--GLDQSRIPFSERKL-------KFSNRFLPVASPFHSHLLVP---------ASD 437
Query: 899 IKAEDLTPEVWDYVFFKAAPFPPKCRVPKAKLDIMRREFQYWYPV-------DLRCSGKD 951
+ +DL + V F A + I PV DLR
Sbjct: 438 LINKDLVK---NNVSFNA-----------KDIQI---------PVYDTFDGSDLRVLSGS 474
Query: 952 LIQNHLTFFIYIHTAIW 968
+ + + I W
Sbjct: 475 ISER-IVDCIIRLPVKW 490
Score = 45.0 bits (106), Expect = 2e-04
Identities = 50/256 (19%), Positives = 86/256 (33%), Gaps = 74/256 (28%)
Query: 1070 GMRLCLADSGDSVEDANFVESMADAGILRLYTF--IEWVKEILATQSTLRTGSQ------ 1121
GM + L + + +D + AD Y F ++ V + G +
Sbjct: 1630 GMGMDLYKTSKAAQDV-WNR--ADNHFKDTYGFSILDIVINNPVNLTIHFGGEKGKRIRE 1686
Query: 1122 -------DSFNDKVFLSEMNLKI-KETEDHYTKMLF---KEAL-RTGFFELQAARDKYRE 1169
++ D +E KI KE +H T F K L T F Q A
Sbjct: 1687 NYSAMIFETIVDGKLKTE---KIFKEINEHSTSYTFRSEKGLLSATQF--TQPA------ 1735
Query: 1170 LTAAEGGMHRTLVLRFV-------------EVQALLLCPVCPHVAEHVYQLLGKDLIQNH 1216
LT E L + + E AL +A+ V + + L++
Sbjct: 1736 LTLMEKAAFEDLKSKGLIPADATFAGHSLGEYAAL----AS--LAD-VMSI--ESLVE-- 1784
Query: 1217 LTFF--IYIHTAIWGDEPEMWPRGIRANGHLLLNSAKMSKSEGNFLTLTEAVKKFSADGM 1274
+ F+ + + A+ DE G+ A +N +++ S EA++
Sbjct: 1785 VVFYRGMTMQVAVPRDELGRSNYGMIA-----INPGRVAASFSQ-----EALQYVVE--- 1831
Query: 1275 RLCLADSGDSVEDANF 1290
R+ +G VE N+
Sbjct: 1832 RVG-KRTGWLVEIVNY 1846
Score = 42.7 bits (100), Expect = 0.001
Identities = 54/325 (16%), Positives = 103/325 (31%), Gaps = 109/325 (33%)
Query: 1345 ILATQSTLRTGSQDSFNDKV----------------------FLSEMNLKIKETEDHYTK 1382
+A+Q L+ + FN + FL ++ ++ ++
Sbjct: 28 FIASQ--LQ----EQFNKILPEPTEGFAADDEPTTPAELVGKFLGYVSSLVEPSKVGQFD 81
Query: 1383 MLFKEALRTGFFELQAARDKYRELTAAEGGMHRTLVLRF--------VEVQALLLCPVCP 1434
+ L FE + Y L + +H L + V+ + L+
Sbjct: 82 QVLNLCLT--EFE-----NCY--LEGND--IH-ALAAKLLQENDTTLVKTKELIKN---- 125
Query: 1435 HVAEHVEMNLKIKETEDHYTKMLFKEALRTGFFEL------QAARDKY----RELTAAEG 1484
++ + + + LF A+ G +L Q D Y R+L
Sbjct: 126 YITARIMAKRPFDKKSNS---ALF-RAVGEGNAQLVAIFGGQGNTDDYFEELRDLYQ--- 178
Query: 1485 GMHRTLVLRFVEVQALLLCPV--CPHVAEHVYQLLGKKGSIVKARW---PEGGPIDDILV 1539
+ LV ++ A L + AE V+ +G + W P P
Sbjct: 179 -TYHVLVGDLIKFSAETLSELIRTTLDAEKVFT----QGLNILE-WLENPSNTP------ 226
Query: 1540 RSSSYLMEAAHAFRL----QVKNHILTASKKKGKKVG----------GGGVGLVEKPTHA 1585
YL+ + L Q+ ++++TA K G G G GLV T
Sbjct: 227 -DKDYLLSIPISCPLIGVIQLAHYVVTA-KLLGFTPGELRSYLKGATGHSQGLV---TAV 281
Query: 1586 TVWVAKTFPPWQSIVLTTMKQMMEV 1610
+ + W+S ++++ + V
Sbjct: 282 AIAETDS---WESF-FVSVRKAITV 302
Score = 41.2 bits (96), Expect = 0.003
Identities = 44/226 (19%), Positives = 63/226 (27%), Gaps = 85/226 (37%)
Query: 55 NGRLHL---GHTFSLSKFREKIYEETVGDAVRSS--PDDKFFTTFPFPYMNGRLHLGHTF 109
NG +L G SL + + + S P F
Sbjct: 372 NGAKNLVVSGPPQSLYGLNLTLRKAKAPSGLDQSRIP----------------------F 409
Query: 110 SLSKCEFSVRFNRLKGKRVLFPFGFHCTGMPIKACADKLKREMES--FGFPP---QFPSE 164
S K +FS RF L V P FH + +D + +++ F Q P
Sbjct: 410 SERKLKFSNRF--L---PVASP--FHSHLL--VPASDLINKDLVKNNVSFNAKDIQIPVY 460
Query: 165 DTE----PQTDKDDDDPVIKDKSKGKKSKAVAKAGSAKYQWQIMQSLGLEDDEIRKFADA 220
DT + I D + +W + +F A
Sbjct: 461 DTFDGSDLRVLSGSISERIVD--------CII---RLPVKW----------ETTTQF-KA 498
Query: 221 SHWLDHFPPLAVQDLRSI--------GIHVDWRRTFI---TTDSNP 255
+H LD F P L + G+ V I T D NP
Sbjct: 499 THILD-FGPGGASGLGVLTHRNKDGTGVRV------IVAGTLDINP 537
Score = 38.9 bits (90), Expect = 0.020
Identities = 49/263 (18%), Positives = 84/263 (31%), Gaps = 94/263 (35%)
Query: 907 EVWD---------YVF-----FKAAP------F-PPKCRVPKAKLDIMRREFQYWYPVDL 945
+VW+ Y F P F K + + M E VD
Sbjct: 1644 DVWNRADNHFKDTYGFSILDIVINNPVNLTIHFGGEKGKRIRENYSAMIFE----TIVDG 1699
Query: 946 RCSGKDLIQN---HLTFFIYIH-------T------------AIWGDEPEMWPRGIR--- 980
+ + + + H T + + T A + D + +G+
Sbjct: 1700 KLKTEKIFKEINEHSTSYTFRSEKGLLSATQFTQPALTLMEKAAFED---LKSKGLIPAD 1756
Query: 981 ---ANGHLL-----LNSAKDLIQNHLTFFIYKLFSDLIQNHLTFF--IYIHTAIWGDEPE 1030
A GH L L S D++ L++ + F+ + + A+ DE
Sbjct: 1757 ATFA-GHSLGEYAALASLADVMS----------IESLVE--VVFYRGMTMQVAVPRDELG 1803
Query: 1031 MWPRGIRANGHLLLNSAKMSKSEGNFLTLTEAVKKFSADGMRLCLADSGDSVEDANF-VE 1089
G+ A +N +++ S EA++ R+ +G VE N+ VE
Sbjct: 1804 RSNYGMIA-----INPGRVAASFSQ-----EALQYVVE---RVG-KRTGWLVEIVNYNVE 1849
Query: 1090 SM--ADAGILR-LYTFIEWVKEI 1109
+ AG LR L T + I
Sbjct: 1850 NQQYVAAGDLRALDTVTNVLNFI 1872
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 59.1 bits (142), Expect = 1e-08
Identities = 106/697 (15%), Positives = 196/697 (28%), Gaps = 190/697 (27%)
Query: 193 KAGSAKYQWQ-IMQSLGLEDDEIRKFADASHWLDHFPP-LAVQDLRSIGIHVD----WRR 246
+ G +YQ++ I+ ED + F D D L+ +++ I + D R
Sbjct: 10 ETGEHQYQYKDILSVF--EDAFVDNF-DCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLR 66
Query: 247 TFITTDSNPFFDSFVRWQFMRLRDRHKIKYGKRYTVFSPRDNQPCMD-------HDRASG 299
F T S + V+ +F+ + +I Y + QP M DR
Sbjct: 67 LFWTLLSKQ--EEMVQ-KFVE--EVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYN 121
Query: 300 EGVGPQEYTLIKMRLVKPYPAKLCCLDSKPVFLVAATLRPE---TMYGQTNAWVRPDMAY 356
+ +Y + +++ L LRP + G +
Sbjct: 122 DNQVFAKYNVSRLQPYLKLRQALL------------ELRPAKNVLIDG---------VLG 160
Query: 357 IALSCLDSKPVFLVAATLRPETMYGQTN---AWVRPDMAYIAFTTATGEVFVCTERSARN 413
+ + + + + W+ + + V ++
Sbjct: 161 SGKTWV-------ALDVCLSYKVQCKMDFKIFWLN-----LKNCNSPETVLEMLQKLLYQ 208
Query: 414 MAYQGFTEVEGKINVLL-------RLTGQVCIRSGDECVVALCDQWYLDYGEPTWKAAAE 466
+ + + N+ L L + + + C++ L + W A
Sbjct: 209 IDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAK----AWNAFNL 264
Query: 467 QC--------------LANMNTYH---DEVRRNFGAS------LNWLHEYACSRTYGLGT 503
C L+ T H D L +L
Sbjct: 265 SCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRP--------Q 316
Query: 504 KLPWDEQWLIESLSDSTIYMAYYTVAHLLQGGTFRGEN-----GNALN--IKA--EDLTP 554
LP E S I A ++ G +N + L I++ L P
Sbjct: 317 DLP-REVLTTNPRRLSII-------AESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEP 368
Query: 555 EVWDYVFFKSAPFPPKCRVPKAKLDIMRREFQYWYPVDLRCSGKVSTKLPWDEQWLIESL 614
+ +F + + FPP +P L + W+ V V KL SL
Sbjct: 369 AEYRKMFDRLSVFPPSAHIPTILLSL------IWFDVIKSDVMVVVNKL------HKYSL 416
Query: 615 SDSTIYMAYYTVAHLLQGGTFRGENGNALNINCVIVFQVLPYDPVPIIQVPEYGNLCAVT 674
+ + ++ + + EN AL+ + V
Sbjct: 417 VEKQPKESTISIPSIYLELKVKLENEYALHRSI-------------------------VD 451
Query: 675 VYEKLKIQSQNDKDKLQEAKELVYLKGFYDGIM--LVGEFKGKKVQEVKKL------LQK 726
Y K +D + Y FY I L +++ + + L++
Sbjct: 452 HYNIPKTFDSDDLIPPYLDQ---Y---FYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQ 505
Query: 727 KIDIIGVALKAPVTSHSVIYTLPMLSIREDKGTGIVTSVPSDSPDDYAALVDLKKK--PP 784
KI A A S++ TL L + I D+ Y LV+ P
Sbjct: 506 KIRHDSTAWNAS---GSILNTLQQLKFYKPY---I-----CDNDPKYERLVNAILDFLPK 554
Query: 785 FREKYHVTDEMCVV--ALCDQWYLDYGEPTWKAAAEQ 819
E + ++ AL + E ++ A +Q
Sbjct: 555 IEENLICSKYTDLLRIALMAE-----DEAIFEEAHKQ 586
Score = 57.6 bits (138), Expect = 3e-08
Identities = 102/705 (14%), Positives = 180/705 (25%), Gaps = 244/705 (34%)
Query: 550 EDLTPEVWDYVFFKSAPFPPKCRVPKAKLDIMRREFQYWYPVDLRCSGK------VSTKL 603
+D+ + + +K + +W L + V L
Sbjct: 39 QDMPKSI-----LSKEEID---HIIMSKDAVSGTLRLFWT---LLSKQEEMVQKFVEEVL 87
Query: 604 PWDEQWLIESLSD-----STIYMAYYTVAHLLQGGTFRGENGNALNINCVIVFQVLPYDP 658
+ ++L+ + S + Y L N N QV
Sbjct: 88 RINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLY-------NDN----------QVFAKYN 130
Query: 659 VPIIQVPEYGNLCAVTVYEKLKIQSQNDKDKLQEAK--ELVYLKGFYDGIMLVGEFKGKK 716
V +Q Y KL+ L E + + V + G +L G GK
Sbjct: 131 VSRLQP-----------YLKLR-------QALLELRPAKNVLIDG-----VL-G--SGKT 164
Query: 717 VQEVKKLLQKKID------IIGVALKAPVTSHSVIYTL--------PMLSIREDKGTGIV 762
+ L K+ I + LK + +V+ L P + R D + I
Sbjct: 165 WVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNI- 223
Query: 763 TSVPSDSPDDYAALVDLKKKPPFREKYHVTDEMCVVALCDQWYLDYGEPTWKAAAEQC-- 820
A L L K P+ V + + W A C
Sbjct: 224 ---KLRIHSIQAELRRLLKSKPYENCLLVLLN-----VQNAK-------AWNAFNLSCKI 268
Query: 821 ------------LANMNTYH---DEVRRNFGAS------LNWLHEYACSRTYGLGTKLPW 859
L+ T H D L +L LP
Sbjct: 269 LLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRP--------QDLP- 319
Query: 860 DEQWLIESLSDSTIYMAYYTVAHLLQGGTFRGEN-----GNALN--IKA--EDLTPEVWD 910
E S I A ++ G +N + L I++ L P +
Sbjct: 320 REVLTTNPRRLSII-------AESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYR 372
Query: 911 YVFFKAAPFPPKCRVPKAKLDIMRREFQYWYPVDLR--------CSGKDLIQNHL-TFFI 961
+F + + FPP +P L + W+ V L++ I
Sbjct: 373 KMFDRLSVFPPSAHIPTILLSL------IWFDVIKSDVMVVVNKLHKYSLVEKQPKESTI 426
Query: 962 YIHTAIWGDEPEMWPRGIRANGHLLLN-SAKDLIQNHLTFFI--YKLFSDLIQNHLT--- 1015
I + +L L ++ H + + Y + + L
Sbjct: 427 SIP-----------------SIYLELKVKLENEYALHRS-IVDHYNIPKTFDSDDLIPPY 468
Query: 1016 ----FFIYI--H--TAIWGDEPEMWPRGIRANGHLLLNSAKMSKSEGNFLTLTEAVKKFS 1067
F+ +I H + ++ + L+ FL +K
Sbjct: 469 LDQYFYSHIGHHLKNIEHPERMTLFRM-------VFLDF--------RFLE-----QKIR 508
Query: 1068 ADGMRL-CLADSGDSVEDANFVESMADAGILRLYTFIEWVKEILATQSTLRTGSQDSFND 1126
D ++++ L+ Y K + ++ D
Sbjct: 509 HDSTAWNASGSILNTLQQ------------LKFY------KPYICDNDPKYERLVNAILD 550
Query: 1127 KVFLSEMNLKIKETED-------HYTKMLFKEALRTGFFELQAAR 1164
+ E NL + D + +F+EA + Q R
Sbjct: 551 FLPKIEENLICSKYTDLLRIALMAEDEAIFEEAHK------QVQR 589
Score = 49.9 bits (118), Expect = 8e-06
Identities = 102/710 (14%), Positives = 201/710 (28%), Gaps = 229/710 (32%)
Query: 930 LDIMRREFQYWYPVDLRCSGKDLIQNHLTFFIYIHTAIWGDEPEMWPRGIRANGHL--LL 987
+D E QY Y KD++ F+ D +M P+ I + + ++
Sbjct: 7 MDFETGEHQYQY--------KDILSVFEDAFV--DNFDCKDVQDM-PKSILSKEEIDHII 55
Query: 988 NSAKDLIQNHLTFFI---------YKLFSDLIQNHLTF------------------FIYI 1020
S + F+ K ++++ + F +I
Sbjct: 56 MSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQ 115
Query: 1021 HTAIWGDEPEMWPRGI-RANGHLLLNSAKMSKSEGNFLTLTEAVKKFSADGMRLCLADSG 1079
++ D + R +L L A + + + DG+ SG
Sbjct: 116 RDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLI---------DGV----LGSG 162
Query: 1080 DSVEDANFVESMADAGILRLYTFIEWVKEILATQSTLRTGSQDSFNDKVFLSEMNLKIKE 1139
K +A L Q + K+F +NLK
Sbjct: 163 ---------------------------KTWVALDVCLSYKVQCKMDFKIFW--LNLKNCN 193
Query: 1140 TEDHYTKMLFK-------------EALRTGFFELQAARDKYRELTAAEGGMHRTLVLRFV 1186
+ + +ML K + + + + + R L ++ + LVL V
Sbjct: 194 SPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNV 253
Query: 1187 E----VQALLL-CPV-----CPHVAEHVYQLLGKDLIQNH----------LTFFIYIHTA 1226
+ A L C + V + + + +H +
Sbjct: 254 QNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLL-----L 308
Query: 1227 IW-GDEPEMWPRGIRANGHLLLN--SAKMSKSEGNFLTLTEAVKKFSADGMRLCLADSGD 1283
+ P+ PR + L+ + + + L + K + D + + S +
Sbjct: 309 KYLDCRPQDLPREVLTTNPRRLSIIAESIR----DGLATWDNWKHVNCDKLTTIIESSLN 364
Query: 1284 SVEDANFVESMADAAVKKFSAD----GMRLCLADSGDSVEDANFVESMADAGILRLYTFI 1339
+E A + + +V F + L L D V + + L Y+ +
Sbjct: 365 VLEPAEYRKMFDRLSV--FPPSAHIPTILLSLIWFDVIKSD---VMVVVNK--LHKYSLV 417
Query: 1340 EWVKEILATQSTLRTGSQDSFNDKVFLSEMNLKIKETEDHYTKMLFKEALRTGFFELQAA 1399
E + + + + L++K ++
Sbjct: 418 E----------------KQPKESTISIPSIYLELKVKLEN-------------------- 441
Query: 1400 RDKYRELTAAEGGMHRTLVLRFVEVQAL----LLCP-----VCPHVAEHVEMNLKIKETE 1450
E +HR++V + + L+ P H+ H LK E
Sbjct: 442 ----------EYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHH----LKNIEHP 487
Query: 1451 DHYTKMLFKEALRTGFFELQAARDKYRELTAA---EGGMHRTL-VLRFVEVQALLLCPVC 1506
+ T LF R F + + K R + A G + TL L+F + +C
Sbjct: 488 ERMT--LF----RMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQLKFYKPY---ICDND 538
Query: 1507 PHVAEHVYQLLGKKGSIVKARWPEGGPIDDILVRSSSYLMEAAHAFRLQV 1556
P V +L D L + L+ + + L++
Sbjct: 539 PKYERLVNAIL------------------DFLPKIEENLICSKYTDLLRI 570
Score = 44.5 bits (104), Expect = 4e-04
Identities = 70/558 (12%), Positives = 147/558 (26%), Gaps = 160/558 (28%)
Query: 1133 MNLKIKETEDHYTKML--FKEALRTGFFELQAARDKYRE-LTAAEGGMHRTLVLRFVEVQ 1189
M+ + E + Y +L F++A F + + +D + L+ E + ++ +
Sbjct: 7 MDFETGEHQYQYKDILSVFEDAFVDNF-DCKDVQDMPKSILSKEE--IDHIIMSKDAVSG 63
Query: 1190 A-LLLCPVCPHVAEHVYQLLGKDLIQNH-----------------LTFFIYIHTAIWGDE 1231
L + E V + + + L N+ +I ++ D
Sbjct: 64 TLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDN 123
Query: 1232 PEMWPRGI-RANGHLLLNSAKMSKSEGNFLTLTEAVKKFSADGM----RLCLADSGDSVE 1286
+ R +L L A + + + DG+ + +A D
Sbjct: 124 QVFAKYNVSRLQPYLKLRQALLELRPAKNVLI---------DGVLGSGKTWVA--LDVCL 172
Query: 1287 DANFVESMADAAV-----KKFSADGM-----RLCLADSGDSVEDANFVESM---ADAGIL 1333
M S + + +L + ++ ++ +
Sbjct: 173 SYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQA 232
Query: 1334 RLYTFIE--------------WVKEILAT---QS-TLRTGSQDSFNDKVFLSEMNLKIKE 1375
L ++ + L T D FLS
Sbjct: 233 ELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTD--FLSAATTTHIS 290
Query: 1376 TEDH-------YTKMLFKEALRTGFFEL--QA-------------------AR-DKYREL 1406
+ H K L + L +L + A D ++ +
Sbjct: 291 LDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHV 350
Query: 1407 TAAEGGMHRTL-----VLRFVEVQALLL-CPVCP---HVAEHVEMNL---KIKETEDHYT 1454
+ + + VL E + + V P H+ + + IK
Sbjct: 351 NCDK--LTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVV 408
Query: 1455 KMLFKEAL-----RTGFFELQAARDKYRELTAAEGGMHRTLVLRFVEVQAL----LLCP- 1504
L K +L + + + + + E +HR++V + + L+ P
Sbjct: 409 NKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPY 468
Query: 1505 ----VCPHVAEHVYQL------------------LGKKGSIVKARWPEGGPIDDILVRSS 1542
H+ H+ + L +K W G I + L +
Sbjct: 469 LDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQLK 528
Query: 1543 SYLMEAAHAFRLQVKNHI 1560
Y K +I
Sbjct: 529 FY------------KPYI 534
Score = 32.5 bits (73), Expect = 1.6
Identities = 77/561 (13%), Positives = 137/561 (24%), Gaps = 202/561 (36%)
Query: 1 VER--KGTFKVEY---LQKIEKEVQEEWDREKIYEETVGDAVRSSPDDKFFTTFPFPYMN 55
V++ + ++ Y + I+ E ++ ++Y E + F N
Sbjct: 79 VQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQ--------VFAKYN 130
Query: 56 -GRLHLGHTFSLSKFREKIYEET------------------VGDAVRSSPDDKFFTTFPF 96
RL K R+ + E D K F
Sbjct: 131 VSRLQP-----YLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCL---SYKVQCKMDF 182
Query: 97 P--YMN-GRLH-----------LGHTFSLSKCEFS-------VRFNRLKG---------- 125
++N + L + + S +R + ++
Sbjct: 183 KIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKP 242
Query: 126 -------------KRVLFPFGFHCTGMPI---KACADKLKR--------EMESFGF---- 157
+ F C + K D L + S
Sbjct: 243 YENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDE 302
Query: 158 ------------PPQFPSE--DTEPQT-----DKDDDDPVIKDKSKGKKSKAVAKAGSAK 198
P P E T P+ + D D K +
Sbjct: 303 VKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTI---- 358
Query: 199 YQWQIMQSL-GLEDDEIRK-FADASHWLDHFP-----PLAVQDLRSIGIHVDWRRTFITT 251
I SL LE E RK F L FP P + + + W I +
Sbjct: 359 ----IESSLNVLEPAEYRKMFDR----LSVFPPSAHIPTIL-------LSLIWFDV-IKS 402
Query: 252 DSNPFFDSFVRWQFMRLRDRHKIKYGKRYTVFS-------PRDNQPCMDHDR-------- 296
D + + L ++ + ++ S +N+ + H
Sbjct: 403 DVMVVVNKLHK---YSLVEKQPKES--TISIPSIYLELKVKLENEYAL-HRSIVDHYNIP 456
Query: 297 --ASGEGVGPQE-----YTLIKMRLVKPYPAKLCCLDSKPVFL----VAATLRPETMYGQ 345
+ + P Y+ I L + L VFL + +R ++
Sbjct: 457 KTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRM-VFLDFRFLEQKIRHDSTAWN 515
Query: 346 TNAWVRPDMA-------YIALSCLDSKPVF--LVAATL----RPETMYGQTNAWVRP--D 390
+ + + YI D+ P + LV A L + E N D
Sbjct: 516 ASGSILNTLQQLKFYKPYIC----DNDPKYERLVNAILDFLPKIE-----ENLICSKYTD 566
Query: 391 MAYIAFTTATGEVFVCTERSA 411
+ IA +F +
Sbjct: 567 LLRIALMAEDEAIFEEAHKQV 587
>2x1l_A Methionyl-tRNA synthetase; nucleotide-binding, protein biosynthesis,
ligase, aminoacyl- synthetase; HET: ADN CXS; 2.30A
{Mycobacterium smegmatis} PDB: 2x1m_A*
Length = 524
Score = 54.2 bits (131), Expect = 3e-07
Identities = 45/224 (20%), Positives = 76/224 (33%), Gaps = 47/224 (20%)
Query: 1021 HTAIWGDEPEM-------WPRGIRANGHLLLNSAKMSKSEGNFLTLTEAVKKFSADGMRL 1073
HT W P P+ I A+G LL KMSKS GN + V F D +R
Sbjct: 279 HTVYW---PAFLMSAGLPLPKRIFAHGWLLNRGEKMSKSIGNVVDPVNLVDTFGLDQVRY 335
Query: 1074 CLADSGDSVEDANF-VESMA---------DAGIL--RLYTFIEWVKEILATQSTLRTGSQ 1121
L +D ++ +++ + G L R + + + + +
Sbjct: 336 FLLREVPFGQDGSYNEDAIIGRVNADLANELGNLAQRSLSMVAKNLG-----AAVPDPGE 390
Query: 1122 DSFNDKVFLSEMNLKIKETEDHYTKMLFKEALRTGFFELQAARDKYRELTA--------- 1172
+ D L+ + ++ +H+ AL + + A ++Y
Sbjct: 391 FTDEDTALLAAADALLERVREHFDVPAMHLALEA-IWSVLGAANRYFSAQEPWVLRKSDA 449
Query: 1173 --AEGGMHRTL-----VLRFVEVQALLLCPVCPHVAEHVYQLLG 1209
+ L V+R +LLL PV P + LLG
Sbjct: 450 AEDQQRFRTVLYTTLEVVRIA---SLLLQPVMPESTAKLLDLLG 490
Score = 50.3 bits (121), Expect = 4e-06
Identities = 55/271 (20%), Positives = 91/271 (33%), Gaps = 68/271 (25%)
Query: 1205 YQLLGKDLIQNHLTFFIYIHTAIWGDEPEM-------WPRGIRANGHLLLNSAKMSKSEG 1257
++GKD+ + F HT W P P+ I A+G LL KMSKS G
Sbjct: 268 LHMIGKDI----IRF----HTVYW---PAFLMSAGLPLPKRIFAHGWLLNRGEKMSKSIG 316
Query: 1258 NFLTLTEAVKKFSADGMRLCLADSGDSVEDANFVESMADAAVKKFSADGMRLCLADSGDS 1317
N + V F D +R L +D ++ E DA + + +AD LA+
Sbjct: 317 NVVDPVNLVDTFGLDQVRYFLLREVPFGQDGSYNE---DAIIGRVNAD-----LAN---- 364
Query: 1318 VEDANFVESMADAGIL--RLYTFIEWVKEILATQSTLRTGSQDSFNDKVFLSEMNLKIKE 1375
+ G L R + + + + + + D L+ + ++
Sbjct: 365 -----------ELGNLAQRSLSMVAKNLG-----AAVPDPGEFTDEDTALLAAADALLER 408
Query: 1376 TEDHYTKMLFKEALRTGFFELQAARDKYRELTA-----------AEGGMHRTL-----VL 1419
+H+ AL + + A ++Y + L V+
Sbjct: 409 VREHFDVPAMHLALEA-IWSVLGAANRYFSAQEPWVLRKSDAAEDQQRFRTVLYTTLEVV 467
Query: 1420 RFVEVQALLLCPVCPHVAEHVEMNLKIKETE 1450
R +LLL PV P + L E
Sbjct: 468 RIA---SLLLQPVMPESTAKLLDLLGQPTDE 495
Score = 46.9 bits (112), Expect = 4e-05
Identities = 20/84 (23%), Positives = 27/84 (32%), Gaps = 15/84 (17%)
Query: 81 AVRSSPDDKFFTTFPFPYMNGRLHLGHTFSLSKCEFSVRFNRLKGKRVLFPFGFHCTGMP 140
+ F+ T Y NG H+GH + + RF RL G V + TG
Sbjct: 5 HHHHGGSEPFYITTAIAYPNGVPHIGHAYEYIATDAIARFKRLDGYDVRY-----LTGT- 58
Query: 141 IKACAD----KLKREMESFGFPPQ 160
D K+ G P
Sbjct: 59 -----DVHGQKMAETAAKEGIPAA 77
Score = 35.3 bits (82), Expect = 0.18
Identities = 15/62 (24%), Positives = 20/62 (32%), Gaps = 14/62 (22%)
Query: 36 AVRSSPDDKFFTTFPFPYMNGRLHLGHTFSLSKFREKIYEETVGDAV----RSSPDDKFF 91
+ F+ T Y NG H+GH YE DA+ R D +
Sbjct: 5 HHHHGGSEPFYITTAIAYPNGVPHIGHA----------YEYIATDAIARFKRLDGYDVRY 54
Query: 92 TT 93
T
Sbjct: 55 LT 56
>4dlp_A Aminoacyl-tRNA synthetase, class I:aminoacyl-tRNA synthetase, class
IA:methionyl-tRNA...; structural genomics; 2.65A
{Brucella melitensis biovar abortus 230ORGANISM_TAXID}
Length = 536
Score = 53.8 bits (130), Expect = 4e-07
Identities = 45/226 (19%), Positives = 72/226 (31%), Gaps = 55/226 (24%)
Query: 1021 HTAIWGDEPEM-------WPRGIRANGHLLLNSAKMSKSEGNFLTLTEAVKKFSADGMRL 1073
H W P P+ + A+G L KMSKS GN + E V+++ D +R
Sbjct: 290 HAVYW---PAFLMSAQLPLPKRVFAHGFLFNRGEKMSKSVGNVIDPFELVERYGLDQLRY 346
Query: 1074 CLADSGDSVEDANF-VESMA---------DAGIL--RLYTFIEWVKEILATQSTLRTGSQ 1121
L +D ++ E++ D G L R + I E +
Sbjct: 347 FLMREVPFGQDGSYSHEAIVNRTNADLANDLGNLAQRSLSMIAKNCE-----GKVPQPGA 401
Query: 1122 DSFNDKVFLSEMNLKIKETEDHYTKMLFKEALRT---------GFFELQA----ARDKYR 1168
S DK L + + ++ AL +F Q +
Sbjct: 402 FSEADKAILDQADAALETARKAMDDQALHLALGAIFAVVAEANRYFAGQEPWALRKTDPA 461
Query: 1169 EL-----TAAEGGMHRTLVLRFVEVQALLLCPVCPHVAEHVYQLLG 1209
+ AE LR V +++ P P AE + +L
Sbjct: 462 RMGTVLYVTAEV-------LRRV---GIMVQPFIPQSAEKLLDILA 497
Score = 50.3 bits (121), Expect = 4e-06
Identities = 55/281 (19%), Positives = 90/281 (32%), Gaps = 76/281 (27%)
Query: 1205 YQLLGKDLIQNHLTFFIYIHTAIWGDEPEM-------WPRGIRANGHLLLNSAKMSKSEG 1257
++GKD+ F H W P P+ + A+G L KMSKS G
Sbjct: 279 AHIIGKDI----SRF----HAVYW---PAFLMSAQLPLPKRVFAHGFLFNRGEKMSKSVG 327
Query: 1258 NFLTLTEAVKKFSADGMRLCLADSGDSVEDANFVESMADAAVKKFSADGMRLCLADSGDS 1317
N + E V+++ D +R L +D ++ +A V + +AD LA+
Sbjct: 328 NVIDPFELVERYGLDQLRYFLMREVPFGQDGSYSH---EAIVNRTNAD-----LAN---- 375
Query: 1318 VEDANFVESMADAGIL--RLYTFIEWVKEILATQSTLRTGSQDSFNDKVFLSEMNLKIKE 1375
D G L R + I E + S DK L + + ++
Sbjct: 376 -----------DLGNLAQRSLSMIAKNCE-----GKVPQPGAFSEADKAILDQADAALET 419
Query: 1376 TEDHYTKMLFKEALRT---------GFFELQA----ARDKYREL-----TAAEGGMHRTL 1417
AL +F Q + + AE
Sbjct: 420 ARKAMDDQALHLALGAIFAVVAEANRYFAGQEPWALRKTDPARMGTVLYVTAEV------ 473
Query: 1418 VLRFVEVQALLLCPVCPHVAEHVEMNLKIKETEDHYTKMLF 1458
LR V +++ P P AE + L + + + +L
Sbjct: 474 -LRRV---GIMVQPFIPQSAEKLLDILAVPADKRQFADVLA 510
Score = 47.7 bits (114), Expect = 3e-05
Identities = 19/60 (31%), Positives = 26/60 (43%), Gaps = 5/60 (8%)
Query: 80 DAVRSSPDDKFFTTFPFPYMNGRLHLGHTFSLSKCEFSVRFNRLKGKRVLFPFGFHCTGM 139
S +K++ T Y NG+ H+GH + L + RF RL G V F TG
Sbjct: 17 QGPGSMSREKYYITTAIAYPNGKPHIGHAYELIATDAMARFQRLNGMDVYF-----LTGT 71
Score = 35.7 bits (83), Expect = 0.13
Identities = 17/63 (26%), Positives = 25/63 (39%), Gaps = 14/63 (22%)
Query: 35 DAVRSSPDDKFFTTFPFPYMNGRLHLGHTFSLSKFREKIYEETVGDAV----RSSPDDKF 90
S +K++ T Y NG+ H+GH YE DA+ R + D +
Sbjct: 17 QGPGSMSREKYYITTAIAYPNGKPHIGHA----------YELIATDAMARFQRLNGMDVY 66
Query: 91 FTT 93
F T
Sbjct: 67 FLT 69
>3kfl_A Methionyl-tRNA synthetase; parasite, aminoacyl-tRNA synthetase, tRNA
ligase metrs, methionine, translation, ATP-binding; HET:
ME8; 2.00A {Leishmania major}
Length = 564
Score = 53.4 bits (129), Expect = 5e-07
Identities = 40/222 (18%), Positives = 72/222 (32%), Gaps = 48/222 (21%)
Query: 1021 HTAIWGDEPEM-------WPRGIRANGHLLLNSAKMSKSEGNFLTLTEAVKKFSADGMRL 1073
H W P P + ++G + K+SKS GN E K+F D ++
Sbjct: 308 HAIYW---PAFLMSAELPLPERLVSHGWWTKDHKKISKSLGNAFDPVEKAKEFGIDALKY 364
Query: 1074 CLADSGDSVEDANFVESM------AD-AGIL-----RLYTFIEWVKEILATQSTLRTGSQ 1121
L + +D ++ + + A L R V + ++
Sbjct: 365 FLMRESNFQDDGDYSDKNMVARLNGELADTLGNLVSRCVAPKINVNGMWPEP------AE 418
Query: 1122 DSFNDKVFLSEMNLKIKETEDHYTKMLFKEALRT---------GFFELQA----ARDKYR 1168
S +DK ++ +N + +Y + AL + A +
Sbjct: 419 YSESDKTLIASLNNLAGTVDHYYCLPDIQHALIAIFDVLRSLNAYVTENAPWKLVKMDTA 478
Query: 1169 ELTAAEGGMHRTL-VLRFVEVQALLLCPVCPHVAEHVYQLLG 1209
L ++ T+ LR + L PV P A+ + LG
Sbjct: 479 RLGTV---LYVTMEGLRIC---TMFLQPVMPQKAKEIMDALG 514
Score = 52.7 bits (127), Expect = 9e-07
Identities = 51/284 (17%), Positives = 91/284 (32%), Gaps = 69/284 (24%)
Query: 1205 YQLLGKDLIQNHLTFFIYIHTAIWGDEPEM-------WPRGIRANGHLLLNSAKMSKSEG 1257
++GKD I L F H W P P + ++G + K+SKS G
Sbjct: 297 VHVVGKD-I---LKF----HAIYW---PAFLMSAELPLPERLVSHGWWTKDHKKISKSLG 345
Query: 1258 NFLTLTEAVKKFSADGMRLCLADSGDSVEDANFVESMADAAVKKFSADGMRLCLADSGDS 1317
N E K+F D ++ L + +D ++ + V + + + LAD
Sbjct: 346 NAFDPVEKAKEFGIDALKYFLMRESNFQDDGDYSD---KNMVARLNGE-----LAD---- 393
Query: 1318 VEDANFVESMADAGIL--RLYTFIEWVKEILATQSTLRTGSQDSFNDKVFLSEMNLKIKE 1375
G L R V + ++ S +DK ++ +N
Sbjct: 394 -----------TLGNLVSRCVAPKINVNGMWPEP------AEYSESDKTLIASLNNLAGT 436
Query: 1376 TEDHYTKMLFKEALRT---------GFFELQA----ARDKYRELTAAEGGMHRTL-VLRF 1421
+ +Y + AL + A + L ++ T+ LR
Sbjct: 437 VDHYYCLPDIQHALIAIFDVLRSLNAYVTENAPWKLVKMDTARLGTV---LYVTMEGLRI 493
Query: 1422 VEVQALLLCPVCPHVAEHVEMNLKIKETEDHYTKMLFKEALRTG 1465
+ L PV P A+ + L + E + ++ G
Sbjct: 494 C---TMFLQPVMPQKAKEIMDALGVPEAARVGMENYLFGIVKPG 534
Score = 45.4 bits (108), Expect = 1e-04
Identities = 17/51 (33%), Positives = 25/51 (49%), Gaps = 5/51 (9%)
Query: 89 KFFTTFPFPYMNGRLHLGHTFSLSKCEFSVRFNRLKGKRVLFPFGFHCTGM 139
FF T P Y+N H+GH +S + R++R+KG+ V TG
Sbjct: 27 VFFATTPIYYVNASPHIGHVYSTLIVDVLGRYHRVKGEEVFV-----MTGT 72
Score = 33.4 bits (77), Expect = 0.61
Identities = 14/54 (25%), Positives = 20/54 (37%), Gaps = 14/54 (25%)
Query: 44 KFFTTFPFPYMNGRLHLGHTFSLSKFREKIYEETVGDAV----RSSPDDKFFTT 93
FF T P Y+N H+GH Y + D + R ++ F T
Sbjct: 27 VFFATTPIYYVNASPHIGHV----------YSTLIVDVLGRYHRVKGEEVFVMT 70
>1li5_A Cysrs, cysteinyl-tRNA synthetase, transfer RNA-Cys; cysteine, E.coli,
ligase; 2.30A {Escherichia coli} SCOP: a.27.1.1 c.26.1.1
PDB: 1li7_A 1u0b_B
Length = 461
Score = 52.2 bits (126), Expect = 1e-06
Identities = 25/105 (23%), Positives = 49/105 (46%), Gaps = 23/105 (21%)
Query: 1039 NGHLLLNSAKMSKSEGNFLTLTEAVKKFSADGMRLCLAD---------SGDSVEDANFVE 1089
+G ++++ KMSKS GNF T+ + +K + A+ +R L S ++++
Sbjct: 257 SGMVMVDREKMSKSLGNFFTVRDVLKYYDAETVRYFLMSGHYRSQLNYSEENLKQ----- 311
Query: 1090 SMADAGILRLYTFIEWVKEILATQSTLRTGSQDSFNDKVFLSEMN 1134
A A + RLYT + + +A ++F + F+ M+
Sbjct: 312 --ARAALERLYTALRGTDKTVAPA------GGEAFEAR-FIEAMD 347
Score = 51.8 bits (125), Expect = 1e-06
Identities = 26/99 (26%), Positives = 50/99 (50%), Gaps = 18/99 (18%)
Query: 1242 NGHLLLNSAKMSKSEGNFLTLTEAVKKFSADGMRLCLAD---------SGDSVEDANFVE 1292
+G ++++ KMSKS GNF T+ + +K + A+ +R L S ++++
Sbjct: 257 SGMVMVDREKMSKSLGNFFTVRDVLKYYDAETVRYFLMSGHYRSQLNYSEENLKQ----- 311
Query: 1293 SMADAAVKKF--SADGMRLCLADSGDSVEDANFVESMAD 1329
A AA+++ + G +A +G +A F+E+M D
Sbjct: 312 --ARAALERLYTALRGTDKTVAPAGGEAFEARFIEAMDD 348
>2csx_A Methionyl-tRNA synthetase; ligase, riken structural
genomics/proteomics initiative, RSGI, structural
genomics, ligase/RNA complex; 2.70A {Aquifex aeolicus}
PDB: 2ct8_A*
Length = 497
Score = 51.8 bits (125), Expect = 1e-06
Identities = 41/232 (17%), Positives = 79/232 (34%), Gaps = 49/232 (21%)
Query: 1021 HTAIWGDEPEM-------WPRGIRANGHLLLNSAKMSKSEGNFLTLTEAVKKFSADGMRL 1073
HT W P P+ + A+G + KMSK+ GN + E V+++ D +R
Sbjct: 264 HTVYW---PAFLMSLGYELPKKVFAHGWWTVEGKKMSKTLGNVVDPYEVVQEYGLDEVRY 320
Query: 1074 CLADSGDSVEDANFVESMADAGILRLYTFIEWVKEILA------TQSTL------RTGSQ 1121
L +D +F + + + LA + G
Sbjct: 321 FLLREVPFGQDGDFSKK----------AILNRINGELANEIGNLYSRVVNMAHKFLGGEV 370
Query: 1122 DSFNDKVFLSEMNLKIKETEDHYTKMLFKEALRTGFFELQAARDKYRELTA--------- 1172
D+ + IK E++ K+ F +A+ + + +KY +
Sbjct: 371 SGARDEEYAKIAQESIKNYENYMEKVNFYKAIEE-ILKFTSYLNKYVDEKQPWALNKERK 429
Query: 1173 ---AEGGMHRTL-VLRFVEVQALLLCPVCPHVAEHVYQLLGKDLIQNHLTFF 1220
+ ++ + L + LL P+ P+ + Q+LG+ L +
Sbjct: 430 KEELQKVLYALVDGLFVL---THLLYPITPNKMKEALQMLGEKEFLKELKPY 478
Score = 49.1 bits (118), Expect = 1e-05
Identities = 26/93 (27%), Positives = 40/93 (43%), Gaps = 18/93 (19%)
Query: 1205 YQLLGKDLIQNHLTFFIYIHTAIWGDEPEM-------WPRGIRANGHLLLNSAKMSKSEG 1257
L+GKD+ L F HT W P P+ + A+G + KMSK+ G
Sbjct: 253 LHLVGKDI----LRF----HTVYW---PAFLMSLGYELPKKVFAHGWWTVEGKKMSKTLG 301
Query: 1258 NFLTLTEAVKKFSADGMRLCLADSGDSVEDANF 1290
N + E V+++ D +R L +D +F
Sbjct: 302 NVVDPYEVVQEYGLDEVRYFLLREVPFGQDGDF 334
Score = 45.7 bits (109), Expect = 1e-04
Identities = 17/52 (32%), Positives = 24/52 (46%), Gaps = 5/52 (9%)
Query: 88 DKFFTTFPFPYMNGRLHLGHTFSLSKCEFSVRFNRLKGKRVLFPFGFHCTGM 139
KF+ T P Y+N HLGH ++ + R+ RL+ V F TG
Sbjct: 5 KKFYVTTPIYYVNDVPHLGHAYTTIAADTIARYYRLRDYDVFF-----LTGT 51
Score = 34.1 bits (79), Expect = 0.38
Identities = 17/55 (30%), Positives = 20/55 (36%), Gaps = 14/55 (25%)
Query: 43 DKFFTTFPFPYMNGRLHLGHTFSLSKFREKIYEETVGDAV----RSSPDDKFFTT 93
KF+ T P Y+N HLGH Y D + R D FF T
Sbjct: 5 KKFYVTTPIYYVNDVPHLGHA----------YTTIAADTIARYYRLRDYDVFFLT 49
>2v0c_A Aminoacyl-tRNA synthetase; ligase, nucleotide-binding, protein
biosynthesis; HET: LMS ANZ; 1.85A {Thermus thermophilus}
PDB: 1h3n_A* 1obc_A* 1obh_A* 2bte_A* 2byt_A 2v0g_A*
Length = 878
Score = 51.8 bits (125), Expect = 2e-06
Identities = 34/187 (18%), Positives = 63/187 (33%), Gaps = 41/187 (21%)
Query: 1046 SAKMSKSEGNFLTLTEAVKKFSADGMRLCLADSGDSVEDANFVESMA---------DAGI 1096
A MSKS+GN + + VK+ AD R+ + A + G+
Sbjct: 635 PAVMSKSKGNGVMVGPFVKEQGADIARI-------------TILFAAPPENEMVWTEEGV 681
Query: 1097 L-------RLYTFIEWVKEILATQSTLRTGSQDSFNDKVFLSEMNLKIKETEDHYTKMLF 1149
R+Y + +E L S + D+ +++ +K+ + + F
Sbjct: 682 QGAWRFLNRIYRRVAEDREALLETSGVFQAEALEGKDRELYGKLHETLKKVTEDLEALRF 741
Query: 1150 KEALRT---GFFELQAARDKYRELTAAEGGMHRTLVLRFVEVQALLLCPVCPHVAEHVYQ 1206
T E A +YR+ + + +L P PH+AE ++
Sbjct: 742 ----NTAIAALMEFLNALYEYRK-----DRPVTPVYRTAIRYYLQMLFPFAPHLAEELWH 792
Query: 1207 LLGKDLI 1213
D +
Sbjct: 793 WFWPDSL 799
Score = 48.0 bits (115), Expect = 3e-05
Identities = 28/128 (21%), Positives = 42/128 (32%), Gaps = 49/128 (38%)
Query: 13 QKIEKEVQEEWDREKIYEETVGDAVRSSPDDKFFTTFPFPYMNGRLHLGHTFSLSKFREK 72
IE + Q W+ + + R K + FPY +G LH+GH +
Sbjct: 7 HAIEAKWQRFWEEKGFMKAKDLPGGR----GKQYVLVMFPYPSGDLHMGHLKN------- 55
Query: 73 IYEETVGDAVRSSPDDKFFTTFPFPYMNGRLHLGHTFSLSKCEFSVRFNRLKGKRVLFPF 132
Y T+GD + RF R++G VL P
Sbjct: 56 -Y--TMGDVL-----------------------------------ARFRRMQGYEVLHPM 77
Query: 133 GFHCTGMP 140
G+ G+P
Sbjct: 78 GWDAFGLP 85
Score = 43.7 bits (104), Expect = 5e-04
Identities = 11/50 (22%), Positives = 20/50 (40%), Gaps = 1/50 (2%)
Query: 1481 AAEGGMHRTLVLRFVEVQALLLCPVCPHVAEHVYQLLGKKGSIVKARWPE 1530
+ + + +L P PH+AE ++ S+ +A WPE
Sbjct: 758 YRKDRPVTPVYRTAIRYYLQMLFPFAPHLAEELWHWFW-PDSLFEAGWPE 806
Score = 37.6 bits (88), Expect = 0.042
Identities = 36/196 (18%), Positives = 65/196 (33%), Gaps = 46/196 (23%)
Query: 1249 SAKMSKSEGNFLTLTEAVKKFSADGMRLCLADSGDSVEDANFVESMADA-AVKKFSADGM 1307
A MSKS+GN + + VK+ AD R+ + A ++ +G
Sbjct: 635 PAVMSKSKGNGVMVGPFVKEQGADIARI-------------TILFAAPPENEMVWTEEG- 680
Query: 1308 RLCLADSGDSVEDAN-FVESMADAGILRLYTFIEWVKEILATQSTLRTGSQDSFNDKVFL 1366
V+ A F+ R+Y + +E L S + D+
Sbjct: 681 ----------VQGAWRFLN--------RIYRRVAEDREALLETSGVFQAEALEGKDRELY 722
Query: 1367 SEMNLKIKETEDHYTKMLFKEALRT---GFFELQAARDKYRELTAAEGGMHRTLVLRFVE 1423
+++ +K+ + + F T E A +YR+ + +
Sbjct: 723 GKLHETLKKVTEDLEALRF----NTAIAALMEFLNALYEYRK-----DRPVTPVYRTAIR 773
Query: 1424 VQALLLCPVCPHVAEH 1439
+L P PH+AE
Sbjct: 774 YYLQMLFPFAPHLAEE 789
>3tqo_A Cysteinyl-tRNA synthetase; protein synthesis, ligase; 2.30A {Coxiella
burnetii}
Length = 462
Score = 51.0 bits (123), Expect = 2e-06
Identities = 23/105 (21%), Positives = 44/105 (41%), Gaps = 24/105 (22%)
Query: 1039 NGHLLLNSAKMSKSEGNFLTLTEAVKKFSADGMRLCLAD---------SGDSVEDANFVE 1089
G L +N KMSKS GN +++ EA+K+ + +R L S +++E+
Sbjct: 260 AGLLEINKEKMSKSLGNIISIREALKESDVEVLRYFLLSGHYRNPLSYSKENLEN----- 314
Query: 1090 SMADAGILRLYTFIEWVKEILATQSTLRTGSQDSFNDKVFLSEMN 1134
+ R Y + + + ++ S+ D+ F M+
Sbjct: 315 --GRLALERFYLALRGLPVVNHEKT-------SSYTDR-FYEAMD 349
Score = 49.5 bits (119), Expect = 7e-06
Identities = 26/99 (26%), Positives = 46/99 (46%), Gaps = 19/99 (19%)
Query: 1242 NGHLLLNSAKMSKSEGNFLTLTEAVKKFSADGMRLCLAD---------SGDSVEDANFVE 1292
G L +N KMSKS GN +++ EA+K+ + +R L S +++E+
Sbjct: 260 AGLLEINKEKMSKSLGNIISIREALKESDVEVLRYFLLSGHYRNPLSYSKENLEN----- 314
Query: 1293 SMADAAVKKF--SADGMRLCLADSGDSVEDANFVESMAD 1329
A+++F + G+ + + S D F E+M D
Sbjct: 315 --GRLALERFYLALRGLPVVNHEKTSSYTDR-FYEAMDD 350
>3sp1_A Cysteinyl-tRNA synthetase; structural genomics, seattle structural
genomics center for infectious disease, ssgcid, LYME
disease; HET: AMP; 2.55A {Borrelia burgdorferi}
Length = 501
Score = 50.7 bits (122), Expect = 3e-06
Identities = 19/104 (18%), Positives = 32/104 (30%), Gaps = 17/104 (16%)
Query: 1039 NGHLLLNSAKMSKSEGNFLTLTEAVKK-FSADGMRLCLAD---------SGDSVEDANFV 1088
L+++ KMSKS GNF+T+ + + FS R S D+++ +
Sbjct: 290 GEFLIMDYNKMSKSRGNFITVKDLEDQNFSPLDFRYLCLTSHYRNQLKFSLDNLQASK-- 347
Query: 1089 ESMADAGILRLYTFIEWVKEILATQSTLRTGSQDSFNDKVFLSE 1132
L + + E L E
Sbjct: 348 -----IARENLINKLSYFYESLDPVDLNTLNKDLKNFGFSVEKE 386
Score = 47.6 bits (114), Expect = 3e-05
Identities = 19/108 (17%), Positives = 39/108 (36%), Gaps = 20/108 (18%)
Query: 1242 NGHLLLNSAKMSKSEGNFLTLTEAVKK-FSADGMRLCLAD---------SGDSVEDA--- 1288
L+++ KMSKS GNF+T+ + + FS R S D+++ +
Sbjct: 290 GEFLIMDYNKMSKSRGNFITVKDLEDQNFSPLDFRYLCLTSHYRNQLKFSLDNLQASKIA 349
Query: 1289 -----NFVESMADAAVKKFSADGMRLCLADSGDSVED--ANFVESMAD 1329
N + ++ + ++ +FVE ++
Sbjct: 350 RENLINKLSYFYESLDPVDLNTLNKDLKNFGFSVEKEYYDSFVEKISF 397
>4arc_A Leucine--tRNA ligase; ligase-RNA complex, nucleotide-binding,
protein biosynthesis I aminoacyl-tRNA synthetase,
ATP-binding; 2.00A {Escherichia coli} PDB: 4aq7_A
4ari_A* 4as1_A*
Length = 880
Score = 49.1 bits (118), Expect = 1e-05
Identities = 30/128 (23%), Positives = 48/128 (37%), Gaps = 50/128 (39%)
Query: 13 QKIEKEVQEEWDREKIYEETVGDAVRSSPDDKFFTTFPFPYMNGRLHLGHTFSLSKFREK 72
++IE +VQ WD ++ +E +K++ PY +GRLH+GH +
Sbjct: 28 EEIESKVQLHWDEKRTFE-----VTEDESKEKYYCLSMLPYPSGRLHMGHVRN------- 75
Query: 73 IYEETVGDAVRSSPDDKFFTTFPFPYMNGRLHLGHTFSLSKCEFSVRFNRLKGKRVLFPF 132
Y T+GD + R+ R+ GK VL P
Sbjct: 76 -Y--TIGDVI-----------------------------------ARYQRMLGKNVLQPI 97
Query: 133 GFHCTGMP 140
G+ G+P
Sbjct: 98 GWDAFGLP 105
Score = 47.6 bits (114), Expect = 4e-05
Identities = 14/49 (28%), Positives = 22/49 (44%)
Query: 1482 AEGGMHRTLVLRFVEVQALLLCPVCPHVAEHVYQLLGKKGSIVKARWPE 1530
+G R L+ + +L P PH+ ++Q L +G I A WP
Sbjct: 761 TDGEQDRALMQEALLAVVRMLNPFTPHICFTLWQELKGEGDIDNAPWPV 809
Score = 46.8 bits (112), Expect = 6e-05
Identities = 32/184 (17%), Positives = 65/184 (35%), Gaps = 37/184 (20%)
Query: 1045 NSAKMSKSEGNFLTLTEAVKKFSADGMRLCLADSGDSVEDANFVESMA---------DAG 1095
+KMSKS+ N + V+++ AD +RL F+ + ++G
Sbjct: 636 GMSKMSKSKNNGIDPQVMVERYGADTVRL-------------FMMFASPADMTLEWQESG 682
Query: 1096 I-------LRLYTFIEWVKEILATQSTLRTGSQDSFNDKVFLSEMNLKIKE-TEDHYTKM 1147
+ R++ + + + N K +++ I + T+D +
Sbjct: 683 VEGANRFLKRVWKLVYEHTAKGDVAAL--NVDALTENQKALRRDVHKTIAKVTDDIGRRQ 740
Query: 1148 LFKEALRTGFFELQAARDKYRELTAAEGGMHRTLVLRFVEVQALLLCPVCPHVAEHVYQL 1207
F A+ EL K + + + +L V +L P PH+ ++Q
Sbjct: 741 TFNTAI-AAIMELMNKLAKAPTDGEQDRALMQEALLAVV----RMLNPFTPHICFTLWQE 795
Query: 1208 LGKD 1211
L +
Sbjct: 796 LKGE 799
Score = 32.2 bits (74), Expect = 1.9
Identities = 36/195 (18%), Positives = 67/195 (34%), Gaps = 42/195 (21%)
Query: 1248 NSAKMSKSEGNFLTLTEAVKKFSADGMRLCLADSGDSVEDANFVESMADA-AVKKFSADG 1306
+KMSKS+ N + V+++ AD +RL F+ + A ++ G
Sbjct: 636 GMSKMSKSKNNGIDPQVMVERYGADTVRL-------------FMMFASPADMTLEWQESG 682
Query: 1307 MRLCLADSGDSVEDAN-FVESMADAGILRLYTFIEWVKEILATQSTLRTGSQDSFNDKVF 1365
VE AN F++ R++ + + + N K
Sbjct: 683 -----------VEGANRFLK--------RVWKLVYEHTAKGDVAAL--NVDALTENQKAL 721
Query: 1366 LSEMNLKIKE-TEDHYTKMLFKEALRTGFFELQAARDKYRELTAAEGGMHRTLVLRFVEV 1424
+++ I + T+D + F A+ EL K + + + +L V
Sbjct: 722 RRDVHKTIAKVTDDIGRRQTFNTAI-AAIMELMNKLAKAPTDGEQDRALMQEALLAVV-- 778
Query: 1425 QALLLCPVCPHVAEH 1439
+L P PH+
Sbjct: 779 --RMLNPFTPHICFT 791
>2d5b_A Methionyl-tRNA synthetase; rossmann fold, class 1A AARS, isomerase,
structural genomics, NPPSFA; 1.80A {Thermus thermophilus}
SCOP: a.27.1.1 c.26.1.1 PDB: 1woy_A 1a8h_A 2d54_A
Length = 500
Score = 46.5 bits (111), Expect = 6e-05
Identities = 41/223 (18%), Positives = 65/223 (29%), Gaps = 53/223 (23%)
Query: 1021 HTAIWGDEPEM-------WPRGIRANGHLLL-NSAKMSKSEGNFLTLTEAVKKFSADGMR 1072
H W P M R + G LL + KMSK+ GN + ++K+ D +R
Sbjct: 265 HAVFW---PTMLKAAGIPMYRHLNVGGFLLGPDGRKMSKTLGNVVDPFALLEKYGRDALR 321
Query: 1073 LCLADSGDSVEDANFVESMADAGILRLYTFIEWVKEILA------TQSTL------RTGS 1120
L +D E + LA Q T G
Sbjct: 322 YYLLREIPYGQDTPVSEE----------ALRTRYEADLADDLGNLVQRTRAMLFRFAEGR 371
Query: 1121 QDSFNDKVFLSEMNLKIKETEDHYTKMLFKEALRT---------GFFELQA----ARDKY 1167
L+E ++ F AL + + + +
Sbjct: 372 IPEPVAGEELAEGTGLAGRLRPLVRELKFHVALEEAMAYVKALNRYINEKKPWELFKKEP 431
Query: 1168 RELTAAEGGMHRTL-VLRFVEVQALLLCPVCPHVAEHVYQLLG 1209
E A ++R + LR ++LL P P + + LG
Sbjct: 432 EEARAV---LYRVVEGLRIA---SILLTPAMPDKMAELRRALG 468
Score = 46.1 bits (110), Expect = 8e-05
Identities = 18/53 (33%), Positives = 26/53 (49%), Gaps = 5/53 (9%)
Query: 87 DDKFFTTFPFPYMNGRLHLGHTFSLSKCEFSVRFNRLKGKRVLFPFGFHCTGM 139
+ F+ T P Y+N HLGH ++ +F R++RL G R F TG
Sbjct: 2 EKVFYVTTPIYYVNAEPHLGHAYTTVVADFLARWHRLDGYRTFF-----LTGT 49
Score = 44.9 bits (107), Expect = 2e-04
Identities = 22/79 (27%), Positives = 33/79 (41%), Gaps = 19/79 (24%)
Query: 1205 YQLLGKDLIQNHLTFFIYIHTAIWGDEPEM-------WPRGIRANGHLLL-NSAKMSKSE 1256
+ L+GKD+ L H W P M R + G LL + KMSK+
Sbjct: 254 WHLIGKDI----LKP----HAVFW---PTMLKAAGIPMYRHLNVGGFLLGPDGRKMSKTL 302
Query: 1257 GNFLTLTEAVKKFSADGMR 1275
GN + ++K+ D +R
Sbjct: 303 GNVVDPFALLEKYGRDALR 321
Score = 34.1 bits (79), Expect = 0.39
Identities = 16/56 (28%), Positives = 20/56 (35%), Gaps = 14/56 (25%)
Query: 42 DDKFFTTFPFPYMNGRLHLGHTFSLSKFREKIYEETVGDAV----RSSPDDKFFTT 93
+ F+ T P Y+N HLGH Y V D + R FF T
Sbjct: 2 EKVFYVTTPIYYVNAEPHLGHA----------YTTVVADFLARWHRLDGYRTFFLT 47
>3tun_A Methionyl-tRNA synthetase; aminoacyl-tRNA synthetase, AARS, metrs,
parasite, protein-IN complex, translation, nucleotide
binding; HET: C13; 2.55A {Trypanosoma brucei}
Length = 542
Score = 46.1 bits (109), Expect = 9e-05
Identities = 18/55 (32%), Positives = 27/55 (49%), Gaps = 5/55 (9%)
Query: 85 SPDDKFFTTFPFPYMNGRLHLGHTFSLSKCEFSVRFNRLKGKRVLFPFGFHCTGM 139
+ FF T P Y+N H+GH +S + R++R+KG+RV TG
Sbjct: 6 KVEKVFFVTSPIYYVNAAPHIGHVYSTLITDVIGRYHRVKGERVFA-----LTGT 55
Score = 34.2 bits (78), Expect = 0.38
Identities = 14/58 (24%), Positives = 20/58 (34%), Gaps = 14/58 (24%)
Query: 40 SPDDKFFTTFPFPYMNGRLHLGHTFSLSKFREKIYEETVGDAV----RSSPDDKFFTT 93
+ FF T P Y+N H+GH Y + D + R + F T
Sbjct: 6 KVEKVFFVTSPIYYVNAAPHIGHV----------YSTLITDVIGRYHRVKGERVFALT 53
>1ile_A Ilers, isoleucyl-tRNA synthetase; aminoacyl-tRNA synthetase, riken
structural genomics/proteom initiative, RSGI, structural
genomics; 2.50A {Thermus thermophilus} SCOP: a.27.1.1
b.51.1.1 c.26.1.1 PDB: 1jzq_A* 1jzs_A*
Length = 821
Score = 46.0 bits (110), Expect = 1e-04
Identities = 30/152 (19%), Positives = 54/152 (35%), Gaps = 57/152 (37%)
Query: 12 LQKIEKEVQEEWDREKIYEETVGDAVRSSPDDKFFTTF--PFPYMNGRLHLGHTFSLSKF 69
K+E+EV W REKI++++ V + +T + P P NG H+GH ++
Sbjct: 10 FPKLEEEVLAFWKREKIFQKS----VENRKGGPRYTVYEGP-PTANGLPHVGHA--QAR- 61
Query: 70 REKIYEETVGDAVRSSPDDKFFTTFPFPYMNGRLHLGHTFSLSKCEFSVRFNRLKGKRVL 129
+ D R+ ++G
Sbjct: 62 -------SYKDLF-----------------------------------PRYKTMRGYYAP 79
Query: 130 FPFGFHCTGMPIKACADKL-----KREMESFG 156
G+ G+P++ +K KRE+E++G
Sbjct: 80 RRAGWDTHGLPVELEVEKKLGLKSKREIEAYG 111
Score = 44.5 bits (106), Expect = 3e-04
Identities = 44/219 (20%), Positives = 76/219 (34%), Gaps = 50/219 (22%)
Query: 1039 NGHLL-LNSAKMSKSEGNFLTLTEAVKKFSADGMRLCLADSGDSVEDANFVESMADAGIL 1097
+G +L KMSKS+GN + + ++KF AD +R + S D F + ++
Sbjct: 581 HGLILDEKGQKMSKSKGNVVDPWDIIRKFGADALRWYIYVSAPPEADRRFGPN-----LV 635
Query: 1098 RLYTFIEWVKEILAT-QSTLR----TGSQDSFN-------------DKVFLSEMNLKIKE 1139
R E V++ T + + D + D+ L+ M I+
Sbjct: 636 R-----ETVRDYFLTLWNVYSFFVTYANLDRPDLKNPPPPEKRPEMDRWLLARMQDLIQR 690
Query: 1140 TEDHYTKMLFKEALRT--GF-------FELQAARD--KYRELTAAEGGMHRTL--VLRFV 1186
+ + R F + ++ R E + TL L V
Sbjct: 691 VTEALEAYDPTTSARALRDFVVEDLSQWYVRRNRRRFWKNEDALDREAAYATLYEALVLV 750
Query: 1187 EVQALLLCPVCPHVAEHVYQLLGKDLIQN-----HLTFF 1220
A L P P +AE ++Q L + + HL +
Sbjct: 751 ---ATLAAPFTPFLAEVLWQNLVRSVRLEAKESVHLADW 786
Score = 43.7 bits (104), Expect = 6e-04
Identities = 18/62 (29%), Positives = 31/62 (50%), Gaps = 1/62 (1%)
Query: 1242 NGHLL-LNSAKMSKSEGNFLTLTEAVKKFSADGMRLCLADSGDSVEDANFVESMADAAVK 1300
+G +L KMSKS+GN + + ++KF AD +R + S D F ++ V+
Sbjct: 581 HGLILDEKGQKMSKSKGNVVDPWDIIRKFGADALRWYIYVSAPPEADRRFGPNLVRETVR 640
Query: 1301 KF 1302
+
Sbjct: 641 DY 642
Score = 30.6 bits (70), Expect = 6.1
Identities = 20/66 (30%), Positives = 28/66 (42%), Gaps = 11/66 (16%)
Query: 1499 ALLLCPVCPHVAEHVYQLL------GKKGSIVKARWPE--GGPIDDILVRSSSYLM---E 1547
A L P P +AE ++Q L K S+ A WPE D+ LV ++ +
Sbjct: 751 ATLAAPFTPFLAEVLWQNLVRSVRLEAKESVHLADWPEADPALADEALVAQMRAVLKVVD 810
Query: 1548 AAHAFR 1553
A A R
Sbjct: 811 LARAAR 816
>3c8z_A Cysteinyl-tRNA synthetase; cysteine ligase, rossmann fold, Cys-SA
inhibitor, zinc binding, ATP-binding, aminoacyl-tRNA
synthetase; HET: 5CA 1PE EPE; 1.60A {Mycobacterium
smegmatis}
Length = 414
Score = 45.3 bits (108), Expect = 1e-04
Identities = 26/121 (21%), Positives = 44/121 (36%), Gaps = 19/121 (15%)
Query: 1242 NGHLLLNSAKMSKSEGNFLTLTEAVKK-FSADGMRLCLADSGDSVEDANFVESMADAAVK 1300
G + + KMSKS GN + +++ + +RL L SG ED + + D A
Sbjct: 282 TGMIGWDGHKMSKSRGNLVLVSQLRAQGVDPSAIRLGLF-SGHYREDRFWSNEVLDEANA 340
Query: 1301 KFSADGMRLCLADSGDSVEDAN-----FVESMAD-----AGILRLYTFIEWVKEILATQS 1350
+ + R A + DA + +AD + L W + L+
Sbjct: 341 RLA----RWRSATALPEAPDATDVIARVRQYLADDLDTPKALAALD---GWCTDALSYGG 393
Query: 1351 T 1351
Sbjct: 394 H 394
Score = 41.1 bits (97), Expect = 0.003
Identities = 16/76 (21%), Positives = 30/76 (39%), Gaps = 17/76 (22%)
Query: 1039 NGHLLLNSAKMSKSEGNFLTLTEAVKK-FSADGMRLCLAD---------SGDSVEDANFV 1088
G + + KMSKS GN + +++ + +RL L S + +++AN
Sbjct: 282 TGMIGWDGHKMSKSRGNLVLVSQLRAQGVDPSAIRLGLFSGHYREDRFWSNEVLDEAN-- 339
Query: 1089 ESMADAGILRLYTFIE 1104
A + R +
Sbjct: 340 -----ARLARWRSATA 350
>1gax_A Valrs, valyl-tRNA synthetase; protein-RNA complex, rossmann fold,
coiled coil, riken structural genomics/proteomics
initiative, RSGI; HET: VAA; 2.90A {Thermus thermophilus}
SCOP: a.2.7.3 a.27.1.1 b.51.1.1 c.26.1.1 PDB: 1ivs_A*
1iyw_A
Length = 862
Score = 44.9 bits (107), Expect = 3e-04
Identities = 42/179 (23%), Positives = 66/179 (36%), Gaps = 28/179 (15%)
Query: 1048 KMSKSEGNFLTLTEAVKKFSADGMRLCLADSGDSVEDANFVESMADAGILRLYT------ 1101
KMSKS+GN + E V+++ AD +R L +D + R +
Sbjct: 528 KMSKSKGNVIDPLEMVERYGADALRFALIYLATGGQDIRLDLRWLEMA--RNFANKLYNA 585
Query: 1102 --FIE-WVKEILATQSTLRTGSQDSFNDKVFLSEMNLKIKETEDHYTKMLFKEALRT--G 1156
F+ + A + T + D+ S ++ ++E Y + +A R
Sbjct: 586 ARFVLLSREGFQAKEDTP------TLADRFMRSRLSRGVEEITALYEALDLAQAAREVYE 639
Query: 1157 FF--ELQAARDKYRELT--AAEGGMHRTL-VLRFVEVQAL-LLCPVCPHVAEHVYQLLG 1209
E D Y E A + G TL L V L LL P+ P + +YQ L
Sbjct: 640 LVWSEFC---DWYLEAAKPALKAGNAHTLRTLEEVLAVLLKLLHPMMPFLTSELYQALT 695
Score = 44.5 bits (106), Expect = 3e-04
Identities = 33/121 (27%), Positives = 47/121 (38%), Gaps = 11/121 (9%)
Query: 1441 EMNLKIKETEDHYTKMLFKEALRT--GFF--ELQAARDKYRELT--AAEGGMHRTL-VLR 1493
++ ++E Y + +A R E D Y E A + G TL L
Sbjct: 613 RLSRGVEEITALYEALDLAQAAREVYELVWSEFC---DWYLEAAKPALKAGNAHTLRTLE 669
Query: 1494 FVEVQAL-LLCPVCPHVAEHVYQLLGKKGSIVKARWPEGGPIDDILVRSSSYLMEAAHAF 1552
V L LL P+ P + +YQ L K + WPE G D+ R+ L +A A
Sbjct: 670 EVLAVLLKLLHPMMPFLTSELYQALTGKEELALEAWPEPGGRDEEAERAFEALKQAVTAV 729
Query: 1553 R 1553
R
Sbjct: 730 R 730
Score = 33.3 bits (77), Expect = 0.76
Identities = 13/29 (44%), Positives = 19/29 (65%)
Query: 1251 KMSKSEGNFLTLTEAVKKFSADGMRLCLA 1279
KMSKS+GN + E V+++ AD +R L
Sbjct: 528 KMSKSKGNVIDPLEMVERYGADALRFALI 556
Score = 30.6 bits (70), Expect = 4.9
Identities = 15/62 (24%), Positives = 27/62 (43%), Gaps = 3/62 (4%)
Query: 71 EKIYEETVGDAVRSSPDDK---FFTTFPFPYMNGRLHLGHTFSLSKCEFSVRFNRLKGKR 127
K E+ + ++P F P P + G LH+GH S + +R+ R++G
Sbjct: 14 PKWAEKWAKNPFVANPKSGKPPFVIFMPPPNVTGSLHMGHALDNSLQDALIRYKRMRGFE 73
Query: 128 VL 129
+
Sbjct: 74 AV 75
Score = 29.8 bits (68), Expect = 8.3
Identities = 9/23 (39%), Positives = 14/23 (60%)
Query: 331 FLVAATLRPETMYGQTNAWVRPD 353
F+ AT+RPET++ V P+
Sbjct: 209 FIEIATVRPETVFADQAIAVHPE 231
Score = 29.8 bits (68), Expect = 8.3
Identities = 9/23 (39%), Positives = 14/23 (60%)
Query: 368 FLVAATLRPETMYGQTNAWVRPD 390
F+ AT+RPET++ V P+
Sbjct: 209 FIEIATVRPETVFADQAIAVHPE 231
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 36.9 bits (84), Expect = 0.019
Identities = 10/37 (27%), Positives = 15/37 (40%), Gaps = 14/37 (37%)
Query: 305 QEYTLIKMRL---VKPY-PAKLCCLDSKPVFLVAATL 337
Q +K +L +K Y DS P + AT+
Sbjct: 20 QA---LK-KLQASLKLYAD------DSAPALAIKATM 46
Score = 34.5 bits (78), Expect = 0.11
Identities = 12/42 (28%), Positives = 19/42 (45%), Gaps = 18/42 (42%)
Query: 715 KKVQEVKKLLQKKIDIIGVALK--APVTSHSVIYTLPMLSIR 754
+K Q +KK LQ +LK A ++ P L+I+
Sbjct: 18 EK-QALKK-LQA-------SLKLYADDSA-------PALAIK 43
Score = 31.8 bits (71), Expect = 0.86
Identities = 9/30 (30%), Positives = 16/30 (53%), Gaps = 7/30 (23%)
Query: 205 QSLG-LEDDEIRKFADASHWLDHFPPLAVQ 233
Q+L L+ ++ +AD D P LA++
Sbjct: 20 QALKKLQA-SLKLYAD-----DSAPALAIK 43
>1ffy_A Isoleucyl-tRNA synthetase; protein-RNA complex, metal IONS, editing
tRNA synthetase, double-sieve, ligase/RNA, mupiroci;
HET: MRC; 2.20A {Staphylococcus aureus} SCOP: a.27.1.1
b.51.1.1 c.26.1.1 PDB: 1qu2_A* 1qu3_A*
Length = 917
Score = 36.8 bits (86), Expect = 0.082
Identities = 19/49 (38%), Positives = 29/49 (59%), Gaps = 8/49 (16%)
Query: 97 PYMNGRLHLGHTFSLSKC--EFSVRFNRLKGKRVLFPF--GFHCTGMPI 141
PY NG LH+GH +L+K +F VR+ ++G P+ G+ G+PI
Sbjct: 57 PYANGNLHMGH--ALNKILKDFIVRYKTMQGFYA--PYVPGWDTHGLPI 101
Score = 35.6 bits (83), Expect = 0.17
Identities = 19/56 (33%), Positives = 23/56 (41%), Gaps = 13/56 (23%)
Query: 12 LQKIEKEVQEEWDREKIYEETVGDAVRSSPDDKFFTTF-----PFPYMNGRLHLGH 62
L E ++QE+WD E Y TF P PY NG LH+GH
Sbjct: 20 LPNKEPQIQEKWDAEDQYH-----KALEKNKGN--ETFILHDGP-PYANGNLHMGH 67
Score = 33.7 bits (78), Expect = 0.62
Identities = 45/238 (18%), Positives = 67/238 (28%), Gaps = 89/238 (37%)
Query: 1048 KMSKSEGNFLTLTEAVKKFSADGMRLCLADSGDSVEDANFVESMADAGILRLYTFIEWV- 1106
KMSKS GN + + VK+ AD I RL WV
Sbjct: 595 KMSKSLGNVIVPDQVVKQKGAD--------------------------IARL-----WVS 623
Query: 1107 -----------KEILATQS--------TLR--TGSQDSFN--------------DKVFLS 1131
EIL S TLR G+ + FN D+ L+
Sbjct: 624 STDYLADVRISDEILKQTSDDYRKIRNTLRFMLGNINDFNPDTDSIPESELLEVDRYLLN 683
Query: 1132 EMNLKIKETEDHYTKMLFKEALRT---------GFFELQAARDKYRELTAAEGGMHR--- 1179
+ T ++Y + + F L +D R
Sbjct: 684 RLREFTASTINNYENFDYLNIYQEVQNFINVELSNFYLDYGKD--ILYIEQRDSHIRRSM 741
Query: 1180 -TLVLRFVEVQALLLCPVCPHVAEHVYQLLGKDLIQNHLTFFIYIHTAIWGDEPEMWP 1236
T++ + + LL P+ H AE V+ + +H A E+
Sbjct: 742 QTVLYQILVDMTKLLAPILVHTAEEVWSHTPHVKEE-------SVHLADMPKVVEVDQ 792
Score = 32.9 bits (76), Expect = 1.2
Identities = 13/26 (50%), Positives = 16/26 (61%)
Query: 1251 KMSKSEGNFLTLTEAVKKFSADGMRL 1276
KMSKS GN + + VK+ AD RL
Sbjct: 595 KMSKSLGNVIVPDQVVKQKGADIARL 620
>3ppm_A Fatty-acid amide hydrolase 1; protein-inhibitor complex, FAAH,
oxazole, oxadiazole, endoca degradation, membrane
protein; HET: JG1 1DO; 1.78A {Rattus norvegicus} PDB:
2wj2_A* 3k7f_A* 3k83_A* 3k84_A* 3lj6_A* 3lj7_A 3oj8_A*
2wj1_A* 3pr0_A* 2wap_A* 1mt5_A* 2vya_A* 3qk5_A* 3qj8_A*
3qj9_A* 3qkv_A*
Length = 573
Score = 34.8 bits (80), Expect = 0.30
Identities = 22/181 (12%), Positives = 44/181 (24%), Gaps = 48/181 (26%)
Query: 1262 LTEAVKKFSADGMRLCLADSGDSVEDANFVESMADAAVKKFSADGMRLCLADSGDSVEDA 1321
L E ++ A G L N ++ + +DG R L + D
Sbjct: 340 LIETKQRLEAAGHTL------IPFLPNNIPYALEVLSTGGLFSDGGRSFLQNFKGDFVDP 393
Query: 1322 NFVESMADAGILRLYTFIEWVKEILATQSTLRTGSQDSFNDKVFLSEMNLKIKETEDHYT 1381
++ + W K +L+ + +
Sbjct: 394 CL------GDLILILRLPSWFKRLLS------------------------LLLKPLFPRL 423
Query: 1382 KMLFKEALRTGFFE---LQAARDKYRELTAAEGGMHRTLVLRFVEVQALLLCPVCPHVAE 1438
+ LQ + YR+ + ++V LL P+ +
Sbjct: 424 AAFLNNMRPRSAEKLWKLQHEIEMYRQ------SVIAQWKAMNLDV---LLTPMLGPALD 474
Query: 1439 H 1439
Sbjct: 475 L 475
Score = 34.0 bits (78), Expect = 0.45
Identities = 24/176 (13%), Positives = 45/176 (25%), Gaps = 30/176 (17%)
Query: 1059 LTEAVKKFSADGMRL---CLADSGDSVEDANFVESMADAGILRLYTFIEWVKEILATQST 1115
L E ++ A G L + ++E + +D G L F +
Sbjct: 340 LIETKQRLEAAGHTLIPFLPNNIPYALEVLSTGGLFSDGGRSFLQNFKGDFVDPCLGDLI 399
Query: 1116 LRTGSQDSFNDKVFLSEMNLKIKETEDHYTKMLFKEALRTGFFE---LQAARDKYRELTA 1172
L F K LS + + + LQ + YR+
Sbjct: 400 LILRLPSWF--KRLLSL----LLKPLFPRLAAFLNNMRPRSAEKLWKLQHEIEMYRQ--- 450
Query: 1173 AEGGMHRTLVLRFVEVQALLLCPVCPHVAEHVYQLLGKDLIQNHLTFFIYIHTAIW 1228
+ ++V LL P+ + +T ++
Sbjct: 451 ---SVIAQWKAMNLDV---LLTPMLGPALDLNTP---------GRATGAVSYTMLY 491
>1wka_A Valyl-tRNA synthetase; editing, CP1, fidelity, thermus thrmophilus,
translation, amino acid, structural genomics; 1.70A
{Thermus thermophilus} SCOP: b.51.1.1 PDB: 1wk9_A*
Length = 147
Score = 31.7 bits (73), Expect = 0.91
Identities = 9/23 (39%), Positives = 14/23 (60%)
Query: 331 FLVAATLRPETMYGQTNAWVRPD 353
F+ AT+RPET++ V P+
Sbjct: 18 FIEIATVRPETVFADQAIAVHPE 40
Score = 31.7 bits (73), Expect = 0.91
Identities = 9/23 (39%), Positives = 14/23 (60%)
Query: 368 FLVAATLRPETMYGQTNAWVRPD 390
F+ AT+RPET++ V P+
Sbjct: 18 FIEIATVRPETVFADQAIAVHPE 40
>1sjy_A MUTT/nudix family protein; nudix fold, alpha-beta-alpha sandwich,
structural genomics, BSGC structure funded by NIH; 1.39A
{Deinococcus radiodurans} SCOP: d.113.1.1 PDB: 1soi_A
1su2_A* 1sz3_A*
Length = 159
Score = 29.0 bits (65), Expect = 7.3
Identities = 18/73 (24%), Positives = 26/73 (35%), Gaps = 18/73 (24%)
Query: 25 REKIYEETVGDAVRSSPDDKFFTTFPFPYMNGRLHLGHTFSLSKFREKIYEETVGDAVRS 84
RE EET G VR KF + + +G L L H + + E G +
Sbjct: 64 RE-ACEET-GLRVR---PVKFLGAYLGRFPDGVLILRHVW--------LAEPEPGQTLAP 110
Query: 85 SPDD-----KFFT 92
+ D F +
Sbjct: 111 AFTDEIAEASFVS 123
>3fnr_A Arginyl-tRNA synthetase; transferase, PSI-2, NYSGXRC, struc genomics,
protein structure initiative; 2.20A {Campylobacter
jejuni}
Length = 464
Score = 29.9 bits (68), Expect = 7.7
Identities = 10/25 (40%), Positives = 17/25 (68%)
Query: 1048 KMSKSEGNFLTLTEAVKKFSADGMR 1072
KMSK GNF+ +++ V + +D +R
Sbjct: 285 KMSKRAGNFILMSDVVDEIGSDALR 309
Score = 29.9 bits (68), Expect = 7.7
Identities = 10/25 (40%), Positives = 17/25 (68%)
Query: 1251 KMSKSEGNFLTLTEAVKKFSADGMR 1275
KMSK GNF+ +++ V + +D +R
Sbjct: 285 KMSKRAGNFILMSDVVDEIGSDALR 309
>2hz7_A Glutaminyl-tRNA synthetase; rossmann fold, GLNRS core, class I
aminoacyl-tRNA synthetase, ligase; 2.30A {Deinococcus
radiodurans}
Length = 851
Score = 30.2 bits (68), Expect = 8.1
Identities = 13/42 (30%), Positives = 19/42 (45%), Gaps = 5/42 (11%)
Query: 69 FREKIYEETVGDAVRSSPDDKFFTTFPFPYMNGRLHLGHTFS 110
F +I E + + + T FP P +G HLGH F+
Sbjct: 50 FITEIIERDL----EAGKYPRVVTRFP-PDPSGYAHLGHVFA 86
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.321 0.136 0.423
Gapped
Lambda K H
0.267 0.0749 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 25,467,496
Number of extensions: 1587932
Number of successful extensions: 3899
Number of sequences better than 10.0: 1
Number of HSP's gapped: 3818
Number of HSP's successfully gapped: 133
Length of query: 1618
Length of database: 6,701,793
Length adjustment: 107
Effective length of query: 1511
Effective length of database: 3,714,246
Effective search space: 5612225706
Effective search space used: 5612225706
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 64 (28.4 bits)