RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy5309
(1618 letters)
>d1h3na3 c.26.1.1 (A:1-225,A:418-686) Leucyl-tRNA synthetase (LeuRS)
{Thermus thermophilus [TaxId: 274]}
Length = 494
Score = 75.4 bits (184), Expect = 2e-14
Identities = 21/73 (28%), Positives = 34/73 (46%)
Query: 83 RSSPDDKFFTTFPFPYMNGRLHLGHTFSLSKCEFSVRFNRLKGKRVLFPFGFHCTGMPIK 142
K + FPY +G LH+GH + + + RF R++G VL P G+ G+P +
Sbjct: 28 LPGGRGKQYVLVMFPYPSGDLHMGHLKNYTMGDVLARFRRMQGYEVLHPMGWDAFGLPAE 87
Query: 143 ACADKLKREMESF 155
A K + +
Sbjct: 88 NAALKFGVHPKDW 100
Score = 49.2 bits (116), Expect = 3e-06
Identities = 30/171 (17%), Positives = 52/171 (30%), Gaps = 6/171 (3%)
Query: 906 PEVWDYVFFKAAPFPPKCRVPKAKLDIMRREFQYWYPVDLRCSGKDLIQNHLTFFIYIHT 965
+ D F + + +L + W PVD G + HL + +
Sbjct: 303 TDTMDTFFDSSWYYLRYTDPHNDRLPFDPEKANAWMPVDQYIGGVEHAVLHLLYSRFFTK 362
Query: 966 AIW---GDEPEMWPRGIRANGHLLLNSAKDLIQNHLTFFIYKLFSDLIQNHLTFFIYIHT 1022
+ + E +G+ G +L A + + L +
Sbjct: 363 FLHDLGMVKVEEPFQGLFTQGMVL---AWTDFGPVEVEGSVVRLPEPTRIRLEIPESALS 419
Query: 1023 AIWGDEPEMWPRGIRANGHLLLNSAKMSKSEGNFLTLTEAVKKFSADGMRL 1073
+ R L A MSKS+GN + + VK+ AD R+
Sbjct: 420 LEDVRKMGAELRPHEDGTLHLWKPAVMSKSKGNGVMVGPFVKEQGADIARI 470
Score = 34.2 bits (77), Expect = 0.12
Identities = 12/28 (42%), Positives = 17/28 (60%)
Query: 1249 SAKMSKSEGNFLTLTEAVKKFSADGMRL 1276
A MSKS+GN + + VK+ AD R+
Sbjct: 443 PAVMSKSKGNGVMVGPFVKEQGADIARI 470
Score = 34.2 bits (77), Expect = 0.16
Identities = 18/105 (17%), Positives = 38/105 (36%), Gaps = 2/105 (1%)
Query: 210 EDDEIRKFADASHWLDHFPPLAVQDLRSIGIHVDWRRTFITTDSNPFFDSFVRWQFMRLR 269
E+ ++ W A + LR +GI DW R T + + + +W F+++
Sbjct: 87 ENAALKFGVHPKDWTYANIRQAKESLRLMGILYDWDREVTTCEPE--YYRWNQWIFLKMW 144
Query: 270 DRHKIKYGKRYTVFSPRDNQPCMDHDRASGEGVGPQEYTLIKMRL 314
++ K + P+ + G ++ + K L
Sbjct: 145 EKGLAYRAKGLVNWCPKCQTVLANEQVVEGRCWRHEDTPVEKREL 189
>d1ilea3 c.26.1.1 (A:1-197,A:387-641) Isoleucyl-tRNA synthetase
(IleRS) {Thermus thermophilus [TaxId: 274]}
Length = 452
Score = 72.7 bits (177), Expect = 1e-13
Identities = 22/134 (16%), Positives = 41/134 (30%), Gaps = 48/134 (35%)
Query: 12 LQKIEKEVQEEWDREKIYEETVGDAVRSSPDDKFFTTFPFPYMNGRLHLGHTFSLSKFRE 71
K+E+EV W REKI++++V +
Sbjct: 10 FPKLEEEVLAFWKREKIFQKSVEN------------------------------------ 33
Query: 72 KIYEETVGDAVRSSPDDKFFTTFPFPYMNGRLHLGHTFSLSKCEFSVRFNRLKGKRVLFP 131
++ P NG H+GH + S + R+ ++G
Sbjct: 34 ------------RKGGPRYTVYEGPPTANGLPHVGHAQARSYKDLFPRYKTMRGYYAPRR 81
Query: 132 FGFHCTGMPIKACA 145
G+ G+P++
Sbjct: 82 AGWDTHGLPVELEV 95
Score = 48.0 bits (113), Expect = 8e-06
Identities = 21/93 (22%), Positives = 39/93 (41%), Gaps = 4/93 (4%)
Query: 1209 GKDLIQNHLTFFIYIHTAIWGDEPEMWPRGIRANGHLL-LNSAKMSKSEGNFLTLTEAVK 1267
G D + + ++G + + +G +L KMSKS+GN + + ++
Sbjct: 362 GIDQTRGWFNSLHQLGVMLFGSIA---FKNVICHGLILDEKGQKMSKSKGNVVDPWDIIR 418
Query: 1268 KFSADGMRLCLADSGDSVEDANFVESMADAAVK 1300
KF AD +R + S D F ++ V+
Sbjct: 419 KFGADALRWYIYVSAPPEADRRFGPNLVRETVR 451
Score = 46.1 bits (108), Expect = 3e-05
Identities = 21/161 (13%), Positives = 47/161 (29%), Gaps = 15/161 (9%)
Query: 931 DIMRREFQYWYPVDLRCSGKDLIQNHLTFFIYIHTAIWGDEPEMWPRGIRANGHLLLNSA 990
G + + ++ + +P
Sbjct: 298 PFDPHRPYVDQVELACACGGTMRRVPYVIDVWYDSGAMPFASLHYP-----------FEH 346
Query: 991 KDLIQNHLTFFIYKLFSDLIQNHLTFFIYIHTAIWGDEPEMWPRGIRANGHLL-LNSAKM 1049
+++ + D + + ++G + + +G +L KM
Sbjct: 347 EEVFRESFPADFIAEGIDQTRGWFNSLHQLGVMLFGSIA---FKNVICHGLILDEKGQKM 403
Query: 1050 SKSEGNFLTLTEAVKKFSADGMRLCLADSGDSVEDANFVES 1090
SKS+GN + + ++KF AD +R + S D F +
Sbjct: 404 SKSKGNVVDPWDIIRKFGADALRWYIYVSAPPEADRRFGPN 444
>d1rqga2 c.26.1.1 (A:1-138,A:174-396) Methionyl-tRNA synthetase
(MetRS) {Pyrococcus abyssi [TaxId: 29292]}
Length = 361
Score = 71.6 bits (174), Expect = 2e-13
Identities = 36/213 (16%), Positives = 59/213 (27%), Gaps = 8/213 (3%)
Query: 89 KFFTTFPFPYMNGRLHLGHTF-SLSKCEFSVRFNRLKGKRVLFPFGFHCTGMPIKACADK 147
++ T PY NG +H GH + + VR+ RLKG+ V+F G G PI A K
Sbjct: 3 RYMVTSALPYANGPIHAGHLAGAYLPADIFVRYLRLKGEDVVFICGTDEHGTPISFRALK 62
Query: 148 LKREMESFG--FPPQFPSEDTEPQTDKDDDDPVIKDKSKGKKSKAVAKAGSAKYQWQIMQ 205
R F Q + D + K S+
Sbjct: 63 EGRSPREIVDEFHEQIKITFQRAKISFDFFGR-TELPIHYKLSQEFFLKAYENGHLVKKV 121
Query: 206 SLGLEDDEIRKFADASHWLDHFPPLAVQD----LRSIGIHVDWRRTFITTDSNPFFDSFV 261
+ + + F + P ++ +R P + V
Sbjct: 122 TKQAYCEHDKMFLPDRFAICGRPISFRDSAHYYIKMQDFAERLKRWIEKQPWKPNVKNMV 181
Query: 262 RWQFMRLRDRHKIKYGKRYTVFSPRDNQPCMDH 294
+ I + + P D +
Sbjct: 182 LSWIEEGLEERAITRDLNWGIPVPLDEEDMKGK 214
Score = 71.6 bits (174), Expect = 2e-13
Identities = 37/298 (12%), Positives = 80/298 (26%), Gaps = 17/298 (5%)
Query: 807 DYGEPTWKAAAEQCLANMNTYHDEVRRNFGASLNWLHEYACSRTYGLGTKLPWDEQWLIE 866
++G P A ++ + + + + L +++ ++
Sbjct: 51 EHGTPISFRALKEGRSPREIVDEFHEQIKITFQRAKISFDFFGRTELPIHYKLSQEFFLK 110
Query: 867 SLSDSTIYMAYYTVAHLLQGGTFRGENGNALNIKAEDLTPEVW-----------DYVFFK 915
+ + + A+ F + + K
Sbjct: 111 AYENGHLVKKVTKQAYCEHDKMFLPDRFAICGRPISFRDSAHYYIKMQDFAERLKRWIEK 170
Query: 916 AAPFPPKCRVPKAKLDIMRREFQYWYPVDLRCSGKDLIQNHLTFFIYIHTAIWGDEPEMW 975
P + + ++ E ++ ++ +Y+ +
Sbjct: 171 QPWKPNVKNMVLSWIEEGLEERAITRDLNWGIPVPLDEEDMKGKVLYVWFEAPIGYISIT 230
Query: 976 PRGIRANGHLLLNSAKDLIQNHLTFFIYKLFSDLIQNHLTFFIYIHTAIWGDEPEMW--- 1032
+ G L + T I+ + D I H F+ A + E
Sbjct: 231 IEHFKRIGKPNEWKKYWLNIDGQTRVIHFIGKDNIPFHAIFWPAFLMAYGKYKDEEVEAE 290
Query: 1033 ---PRGIRANGHLLLNSAKMSKSEGNFLTLTEAVKKFSADGMRLCLADSGDSVEDANF 1087
P I AN +L L K S S + + E + F AD +R L D++F
Sbjct: 291 WNLPYDIPANEYLTLEGKKFSTSRNWAIWVHEFLDVFPADYLRYYLTTIMPETRDSDF 348
Score = 62.7 bits (151), Expect = 1e-10
Identities = 26/94 (27%), Positives = 36/94 (38%), Gaps = 6/94 (6%)
Query: 1203 HVYQLLGKDLIQNHLTFFIYIHTAIWGDEPEMW------PRGIRANGHLLLNSAKMSKSE 1256
V +GKD I H F+ A + E P I AN +L L K S S
Sbjct: 255 RVIHFIGKDNIPFHAIFWPAFLMAYGKYKDEEVEAEWNLPYDIPANEYLTLEGKKFSTSR 314
Query: 1257 GNFLTLTEAVKKFSADGMRLCLADSGDSVEDANF 1290
+ + E + F AD +R L D++F
Sbjct: 315 NWAIWVHEFLDVFPADYLRYYLTTIMPETRDSDF 348
>d1ivsa4 c.26.1.1 (A:1-189,A:343-578) Valyl-tRNA synthetase (ValRS)
{Thermus thermophilus [TaxId: 274]}
Length = 425
Score = 69.6 bits (169), Expect = 1e-12
Identities = 17/79 (21%), Positives = 33/79 (41%)
Query: 72 KIYEETVGDAVRSSPDDKFFTTFPFPYMNGRLHLGHTFSLSKCEFSVRFNRLKGKRVLFP 131
+ + + A S F P P + G LH+GH S + +R+ R++G ++
Sbjct: 18 EKWAKNPFVANPKSGKPPFVIFMPPPNVTGSLHMGHALDNSLQDALIRYKRMRGFEAVWL 77
Query: 132 FGFHCTGMPIKACADKLKR 150
G G+ + ++L
Sbjct: 78 PGTDHAGIATQVVVERLLL 96
Score = 55.7 bits (133), Expect = 3e-08
Identities = 22/99 (22%), Positives = 41/99 (41%), Gaps = 5/99 (5%)
Query: 1205 YQLLGKDLIQNHLTFFIYIHTAIWGDEPEMWPRGIRANGHLL-LNSAKMSKSEGNFLTLT 1263
+ G D++ ++ G+ P + + +G +L KMSKS+GN +
Sbjct: 331 VLVTGYDILFLWVSRMEVSGYHFMGERP---FKTVLLHGLVLDEKGQKMSKSKGNVIDPL 387
Query: 1264 EAVKKFSADGMRLCLADSGDSVEDANFVESMADAAVKKF 1302
E V+++ AD +R L +D + A + F
Sbjct: 388 EMVERYGADALRFALIYLATGGQDIRLDLRWLEMA-RNF 425
Score = 50.3 bits (119), Expect = 1e-06
Identities = 19/81 (23%), Positives = 35/81 (43%), Gaps = 4/81 (4%)
Query: 1008 DLIQNHLTFFIYIHTAIWGDEPEMWPRGIRANGHLL-LNSAKMSKSEGNFLTLTEAVKKF 1066
D++ ++ G+ P + + +G +L KMSKS+GN + E V+++
Sbjct: 337 DILFLWVSRMEVSGYHFMGERP---FKTVLLHGLVLDEKGQKMSKSKGNVIDPLEMVERY 393
Query: 1067 SADGMRLCLADSGDSVEDANF 1087
AD +R L +D
Sbjct: 394 GADALRFALIYLATGGQDIRL 414
Score = 37.6 bits (86), Expect = 0.012
Identities = 25/206 (12%), Positives = 60/206 (29%), Gaps = 23/206 (11%)
Query: 783 PPFREKYHVTDEMCVVALCDQWYLDYGEPTWKAAAEQCLANMNTYHDEVRRNFGASLNWL 842
E A+ QW+L + ++ + ++ L +
Sbjct: 185 DLEVETCSRCGTPIEYAIFPQWWLRMRPLAEEVLKGLRRGDIAFVPERWKKVNMDWLENV 244
Query: 843 HEYACSRTYGLGTKLPW--DEQWLIESLSDSTIYMAYYTVAHLLQGGTFRGENGNALNIK 900
++ SR G ++P E ++ Y+ T + +
Sbjct: 245 KDWNISRQLWWGHQIPAWYCEDCQAVNVPRPERYLEDPTSCEACGSPRLKRDEDVFDTWF 304
Query: 901 AEDLTPEVWDYVFFKAAPFPPKCRVPKAKLDIMRREFQYWYPVDLRCSGKDLIQNHLTFF 960
+ L P +P + + + +YP D+ +G D++ ++
Sbjct: 305 SSALWP-------LSTLGWPEE-----------TEDLKAFYPGDVLVTGYDILFLWVSRM 346
Query: 961 IYIHTAIWGDEPEMWPRGIRANGHLL 986
G+ P + + +G +L
Sbjct: 347 EVSGYHFMGERP---FKTVLLHGLVL 369
>d1pfva2 c.26.1.1 (A:4-140,A:176-388) Methionyl-tRNA synthetase
(MetRS) {Escherichia coli [TaxId: 562]}
Length = 350
Score = 66.9 bits (162), Expect = 5e-12
Identities = 22/67 (32%), Positives = 29/67 (43%)
Query: 89 KFFTTFPFPYMNGRLHLGHTFSLSKCEFSVRFNRLKGKRVLFPFGFHCTGMPIKACADKL 148
K T PY NG +HLGH + + VR+ R++G V F G PI A +L
Sbjct: 3 KILVTCALPYANGSIHLGHMLEHIQADVWVRYQRMRGHEVNFICADDAHGTPIMLKAQQL 62
Query: 149 KREMESF 155
E
Sbjct: 63 GITPEQM 69
Score = 58.4 bits (140), Expect = 3e-09
Identities = 38/292 (13%), Positives = 85/292 (29%), Gaps = 18/292 (6%)
Query: 807 DYGEPTWKAAAEQCLANMNTYHDEVRRNFGASLNWLHEYACSRTYGLGTKLPWDEQWLIE 866
+G P A + + + + + + Y + E
Sbjct: 50 AHGTPIMLKAQQLGITPEQMIGEMSQEHQTDFAGFNISYDNYHSTHSEENRQLSELIYSR 109
Query: 867 SLSDSTIYMAYYTVAHLLQGGTFRGENGNALNIKAEDLTPEVWDYVFFKAAPFPPKCR-- 924
+ I + + + G F + E + FF F +
Sbjct: 110 LKENGFIKNRTISQLYDPEKGMFLPDRFVVSGATPVMRDSEHF---FFDLPSFSEMLQAW 166
Query: 925 -----VPKAKLDIMRREFQYWYPVDLRCSGKDLIQNHLTFFIYIHTAIWGDEPEMWPRGI 979
+ + + M+ F+ + + +W D P +
Sbjct: 167 TRSGALQEQVANKMQEWFESGLQQWDISRDAPYFGFEIPNAPGKYFYVWLDAPIGYMGSF 226
Query: 980 RANGHLLLNSA---KDLIQNHLTFFIYKLFSDLIQNHLTFFIYIHTAIWGDEPEMWPRGI 1036
+ +S + ++ + + D++ H F+ + +P
Sbjct: 227 KNLCDKRGDSVSFDEYWKKDSTAELYHFIGKDIVYFHSLFWPAMLEGSNFRKPSNLF--- 283
Query: 1037 RANGHLLLNSAKMSKSEGNFLTLTEAVKKFSADGMRLCL-ADSGDSVEDANF 1087
+G++ +N AKMSKS G F+ + + F AD +R A ++D +
Sbjct: 284 -VHGYVTVNGAKMSKSRGTFIKASTWLNHFDADSLRYYYTAKLSSRIDDIDL 334
Score = 58.4 bits (140), Expect = 3e-09
Identities = 23/89 (25%), Positives = 41/89 (46%), Gaps = 5/89 (5%)
Query: 1203 HVYQLLGKDLIQNHLTFFIYIHTAIWGDEPEMWPRGIRANGHLLLNSAKMSKSEGNFLTL 1262
+Y +GKD++ H F+ + +P +G++ +N AKMSKS G F+
Sbjct: 250 ELYHFIGKDIVYFHSLFWPAMLEGSNFRKPSNLF----VHGYVTVNGAKMSKSRGTFIKA 305
Query: 1263 TEAVKKFSADGMRLCL-ADSGDSVEDANF 1290
+ + F AD +R A ++D +
Sbjct: 306 STWLNHFDADSLRYYYTAKLSSRIDDIDL 334
>d1ffya3 c.26.1.1 (A:1-200,A:395-644) Isoleucyl-tRNA synthetase
(IleRS) {Staphylococcus aureus [TaxId: 1280]}
Length = 450
Score = 66.9 bits (162), Expect = 8e-12
Identities = 26/145 (17%), Positives = 47/145 (32%), Gaps = 48/145 (33%)
Query: 12 LQKIEKEVQEEWDREKIYEETVGDAVRSSPDDKFFTTFPFPYMNGRLHLGHTFSLSKFRE 71
L E ++QE+WD E Y + +
Sbjct: 20 LPNKEPQIQEKWDAEDQYHKALE------------------------------------- 42
Query: 72 KIYEETVGDAVRSSPDDKFFTTFPFPYMNGRLHLGHTFSLSKCEFSVRFNRLKGKRVLFP 131
++ ++ F PY NG LH+GH + +F VR+ ++G +
Sbjct: 43 -----------KNKGNETFILHDGPPYANGNLHMGHALNKILKDFIVRYKTMQGFYAPYV 91
Query: 132 FGFHCTGMPIKACADKLKREMESFG 156
G+ G+PI+ K + +
Sbjct: 92 PGWDTHGLPIEQALTKKGVDRKKMS 116
Score = 56.5 bits (135), Expect = 2e-08
Identities = 24/97 (24%), Positives = 39/97 (40%), Gaps = 5/97 (5%)
Query: 1205 YQLLGKDLIQNHLTFFIYIHTAIWGDEPEMWPRGIRANGHLL-LNSAKMSKSEGNFLTLT 1263
L G D + I A G P + + ++G ++ KMSKS GN +
Sbjct: 357 MYLEGSDQYRGWFNSSITTSVATRGVSP---YKFLLSHGFVMDGEGKKMSKSLGNVIVPD 413
Query: 1264 EAVKKFSADGMRLCLADSGDSVEDANFVESMADAAVK 1300
+ VK+ AD RL ++ S D + D + +
Sbjct: 414 QVVKQKGADIARLWVS-STDYLADVRISDEILKQTSD 449
Score = 53.4 bits (127), Expect = 1e-07
Identities = 23/85 (27%), Positives = 37/85 (43%), Gaps = 5/85 (5%)
Query: 1007 SDLIQNHLTFFIYIHTAIWGDEPEMWPRGIRANGHLL-LNSAKMSKSEGNFLTLTEAVKK 1065
SD + I A G P + + ++G ++ KMSKS GN + + VK+
Sbjct: 362 SDQYRGWFNSSITTSVATRGVSP---YKFLLSHGFVMDGEGKKMSKSLGNVIVPDQVVKQ 418
Query: 1066 FSADGMRLCLADSGDSVEDANFVES 1090
AD RL ++ S D + D +
Sbjct: 419 KGADIARLWVS-STDYLADVRISDE 442
>d2d5ba2 c.26.1.1 (A:1-348) Methionyl-tRNA synthetase (MetRS)
{Thermus thermophilus [TaxId: 274]}
Length = 348
Score = 64.3 bits (155), Expect = 4e-11
Identities = 20/71 (28%), Positives = 31/71 (43%)
Query: 89 KFFTTFPFPYMNGRLHLGHTFSLSKCEFSVRFNRLKGKRVLFPFGFHCTGMPIKACADKL 148
F+ T P Y+N HLGH ++ +F R++RL G R F G G + A
Sbjct: 4 VFYVTTPIYYVNAEPHLGHAYTTVVADFLARWHRLDGYRTFFLTGTDEHGETVYRAAQAA 63
Query: 149 KREMESFGFPP 159
+ ++F
Sbjct: 64 GEDPKAFVDRV 74
Score = 61.6 bits (148), Expect = 3e-10
Identities = 37/286 (12%), Positives = 73/286 (25%), Gaps = 5/286 (1%)
Query: 807 DYGEPTWKAAAEQCLANMNTYHDEVRRNFGASLNWLHEYACSRTYGLGTKLPWDEQWLIE 866
++GE ++AA R A Y + L +
Sbjct: 51 EHGETVYRAAQAAGEDPKAFVDRVSGRFKRAWDLLGIAYDDFIRTTEERHKKVVQLVLKK 110
Query: 867 SLSDSTIYMAYYTVAHLLQGGTFRGENGNALNIKAEDLTPEVWDYVFFKAAP-----FPP 921
IY Y + + F E + P
Sbjct: 111 VYEAGDIYYGEYEGLYCVSCERFYTEKELVEGLCPIHGRPVERRKEGNYFFRMEKYRPWL 170
Query: 922 KCRVPKAKLDIMRREFQYWYPVDLRCSGKDLIQNHLTFFIYIHTAIWGDEPEMWPRGIRA 981
+ + + I ++ L DL + + + DE + A
Sbjct: 171 QEYIQENPDLIRPEGYRNEVLAMLAEPIGDLSISRPKSRVPWGIPLPWDENHVTFVWFDA 230
Query: 982 NGHLLLNSAKDLIQNHLTFFIYKLFSDLIQNHLTFFIYIHTAIWGDEPEMWPRGIRANGH 1041
+ + + + TF+ + ++ T + M+
Sbjct: 231 LLNYVSALDYPEGEAYRTFWPHAWHLIGKDILKPHAVFWPTMLKAAGIPMYRHLNVGGFL 290
Query: 1042 LLLNSAKMSKSEGNFLTLTEAVKKFSADGMRLCLADSGDSVEDANF 1087
L + KMSK+ GN + ++K+ D +R L +D
Sbjct: 291 LGPDGRKMSKTLGNVVDPFALLEKYGRDALRYYLLREIPYGQDTPV 336
Score = 50.4 bits (119), Expect = 9e-07
Identities = 14/77 (18%), Positives = 26/77 (33%)
Query: 1214 QNHLTFFIYIHTAIWGDEPEMWPRGIRANGHLLLNSAKMSKSEGNFLTLTEAVKKFSADG 1273
++ T + M+ L + KMSK+ GN + ++K+ D
Sbjct: 260 DILKPHAVFWPTMLKAAGIPMYRHLNVGGFLLGPDGRKMSKTLGNVVDPFALLEKYGRDA 319
Query: 1274 MRLCLADSGDSVEDANF 1290
+R L +D
Sbjct: 320 LRYYLLREIPYGQDTPV 336
>d1li5a2 c.26.1.1 (A:1-315) Cysteinyl-tRNA synthetase (CysRS)
{Escherichia coli [TaxId: 562]}
Length = 315
Score = 53.4 bits (127), Expect = 8e-08
Identities = 19/84 (22%), Positives = 32/84 (38%), Gaps = 1/84 (1%)
Query: 1215 NHLTFFIYIHTAIWGDEPEMWPRGIRANGHLLLNSAKMSKSEGNFLTLTEAVKKFSADGM 1274
+ +G ++++ KMSKS GNF T+ + +K + A+ +
Sbjct: 230 LMFPHHENEIAQSTCAHDGQYVNYWMHSGMVMVDREKMSKSLGNFFTVRDVLKYYDAETV 289
Query: 1275 RLCLADSGDSVEDANFVESMADAA 1298
R L SG N+ E A
Sbjct: 290 RYFLM-SGHYRSQLNYSEENLKQA 312
Score = 53.0 bits (126), Expect = 1e-07
Identities = 14/64 (21%), Positives = 26/64 (40%)
Query: 1012 NHLTFFIYIHTAIWGDEPEMWPRGIRANGHLLLNSAKMSKSEGNFLTLTEAVKKFSADGM 1071
+ +G ++++ KMSKS GNF T+ + +K + A+ +
Sbjct: 230 LMFPHHENEIAQSTCAHDGQYVNYWMHSGMVMVDREKMSKSLGNFFTVRDVLKYYDAETV 289
Query: 1072 RLCL 1075
R L
Sbjct: 290 RYFL 293
Score = 33.4 bits (75), Expect = 0.19
Identities = 10/81 (12%), Positives = 23/81 (28%), Gaps = 1/81 (1%)
Query: 97 PYMNGRLHLGHTFSLSKCEFSVRFNRLKGKRVLFPFGFHCTGMP-IKACADKLKREMESF 155
+ H+GH + + R+ R G ++ + IK + + +
Sbjct: 30 ITVYDLCHIGHGRTFVAFDVVARYLRFLGYKLKYVRNITDIDDKIIKRANENGESFVAMV 89
Query: 156 GFPPQFPSEDTEPQTDKDDDD 176
+D + D
Sbjct: 90 DRMIAEMHKDFDALNILRPDM 110
>d1irxa2 c.26.1.1 (A:3-319) Class I lysyl-tRNA synthetase {Archaeon
Pyrococcus horikoshii [TaxId: 53953]}
Length = 317
Score = 48.2 bits (113), Expect = 5e-06
Identities = 23/252 (9%), Positives = 50/252 (19%), Gaps = 7/252 (2%)
Query: 830 EVRRNFGASLNWLHEYACSRTYGLGTKLPWDEQWLIESLSDSTIYMAYYTVAHLLQGGTF 889
EVR + A + + +
Sbjct: 56 EVRHIHMWDDYDRFRKVPRNVPQEWKDYLGMPISEVPDPWGCHESYAEHFMRKFEEEVEK 115
Query: 890 RGENGNALNIKAEDLTPEVWDYVFFKAAPFPPKCRVPKAKLDIMRREFQYWYPVDLRCSG 949
G + L E + + + +I ++
Sbjct: 116 LGIEVDLLYASELYKRGEYSEEIRLAFEKRDKIMEILNKYREIAKQPPLPENWWPAMVYC 175
Query: 950 KDLIQNHLTFFIY---IHTAIWGDEPEMWPRGIRANGHLLLNSAKDLIQNHLTFFIYKLF 1006
+ + + E W N L + +H
Sbjct: 176 PEHRREAEIIEWDGGWKVKYKCPEGHEGWVDIRSGNVKLRWRVDWPMRWSHFGVDFEPAG 235
Query: 1007 SDLIQNHLTFFIYIHTAIWGDEPEMWPRGIRANGHLLLN--SAKMSKSEGNFLTLTEAVK 1064
D + ++ + + KMS S+GN + L++ +
Sbjct: 236 KDHLVAGSSYDTGKEIIKEVYGK--EAPLSLMYEFVGIKGQKGKMSGSKGNVILLSDLYE 293
Query: 1065 KFSADGMRLCLA 1076
+R A
Sbjct: 294 VLEPGLVRFIYA 305
Score = 47.4 bits (111), Expect = 8e-06
Identities = 13/88 (14%), Positives = 27/88 (30%), Gaps = 4/88 (4%)
Query: 1194 CPVCPHVAEHVYQLLGKDLIQNHLTFFIYIHTAIWGDEPEMWPRGIRANGHLLLN--SAK 1251
P+ ++ GKD + ++ + + K
Sbjct: 220 WPMRWSHFGVDFEPAGKDHLVAGSSYDTGKEIIKEVYGK--EAPLSLMYEFVGIKGQKGK 277
Query: 1252 MSKSEGNFLTLTEAVKKFSADGMRLCLA 1279
MS S+GN + L++ + +R A
Sbjct: 278 MSGSKGNVILLSDLYEVLEPGLVRFIYA 305
Score = 39.3 bits (90), Expect = 0.003
Identities = 15/222 (6%), Positives = 52/222 (23%), Gaps = 9/222 (4%)
Query: 82 VRSSPDDKFFTTFPFPYMNGRLHLGHTFSLSKCEFSVRFNRLKGKRVLFPFGFHCTGMPI 141
+R + + + +G +H+G+ L R KG V +
Sbjct: 11 IRERGEKEKYVVESGITPSGYVHVGNFRELFTAYIVGHALRDKGYEVRHIHMWDDYDRFR 70
Query: 142 KACADKLKREMESFG---------FPPQFPSEDTEPQTDKDDDDPVIKDKSKGKKSKAVA 192
K + + + G + + + +++ + + + S+
Sbjct: 71 KVPRNVPQEWKDYLGMPISEVPDPWGCHESYAEHFMRKFEEEVEKLGIEVDLLYASELYK 130
Query: 193 KAGSAKYQWQIMQSLGLEDDEIRKFADASHWLDHFPPLAVQDLRSIGIHVDWRRTFITTD 252
+ ++ + + + K+ + + + +
Sbjct: 131 RGEYSEEIRLAFEKRDKIMEILNKYREIAKQPPLPENWWPAMVYCPEHRREAEIIEWDGG 190
Query: 253 SNPFFDSFVRWQFMRLRDRHKIKYGKRYTVFSPRDNQPCMDH 294
+ + +K R +
Sbjct: 191 WKVKYKCPEGHEGWVDIRSGNVKLRWRVDWPMRWSHFGVDFE 232
>d1h3na1 a.27.1.1 (A:687-814) Leucyl-tRNA synthetase (LeuRS) {Thermus
thermophilus [TaxId: 274]}
Length = 128
Score = 39.5 bits (91), Expect = 5e-04
Identities = 18/118 (15%), Positives = 37/118 (31%), Gaps = 6/118 (5%)
Query: 1098 RLYTFIEWVKEILATQSTLRTGSQDSFNDKVFLSEMNLKIKETEDHYTKMLFKEALRTGF 1157
R+Y + +E L S + D+ +++ +K+ + EALR
Sbjct: 4 RIYRRVAEDREALLETSGVFQAEALEGKDRELYGKLHETLKKVTEDL------EALRFNT 57
Query: 1158 FELQAARDKYRELTAAEGGMHRTLVLRFVEVQALLLCPVCPHVAEHVYQLLGKDLIQN 1215
+ + + +L P PH+AE ++ D +
Sbjct: 58 AIAALMEFLNALYEYRKDRPVTPVYRTAIRYYLQMLFPFAPHLAEELWHWFWPDSLFE 115
Score = 31.0 bits (69), Expect = 0.43
Identities = 17/115 (14%), Positives = 34/115 (29%), Gaps = 6/115 (5%)
Query: 1334 RLYTFIEWVKEILATQSTLRTGSQDSFNDKVFLSEMNLKIKETEDHYTKMLFKEALRTGF 1393
R+Y + +E L S + D+ +++ +K+ + EALR
Sbjct: 4 RIYRRVAEDREALLETSGVFQAEALEGKDRELYGKLHETLKKVTEDL------EALRFNT 57
Query: 1394 FELQAARDKYRELTAAEGGMHRTLVLRFVEVQALLLCPVCPHVAEHVEMNLKIKE 1448
+ + + +L P PH+AE +
Sbjct: 58 AIAALMEFLNALYEYRKDRPVTPVYRTAIRYYLQMLFPFAPHLAEELWHWFWPDS 112
>d1h3na2 b.51.1.1 (A:226-417) Leucyl-tRNA synthetase (LeuRS)
{Thermus thermophilus [TaxId: 274]}
Length = 192
Score = 37.2 bits (85), Expect = 0.008
Identities = 18/142 (12%), Positives = 34/142 (23%), Gaps = 4/142 (2%)
Query: 362 LDSKPVFLVAATLRPETMYGQTNAWVRPDMAYIAFTTATGEVFVCTERSARNMAYQGFTE 421
++ K V + T RP+T++G T + P+ A +
Sbjct: 11 VEGKEVRIPVFTTRPDTLFGATFLVLAPEHPLTLELAAPEKREEVLAYVEAAKRKTEIER 70
Query: 422 VEGKINVLLRLTGQVCIRSGDECVVALCDQWYLDYGEPT----WKAAAEQCLANMNTYHD 477
G + + + Y+ +G T A +Q
Sbjct: 71 QAEGREKTGVFLGAYALNPATGERIPIWTADYVLFGYGTGAIMAVPAHDQRDYEFARKFG 130
Query: 478 EVRRNFGASLNWLHEYACSRTY 499
+ R Y
Sbjct: 131 LPIKKVIERPGEPLPEPLERAY 152
Score = 35.3 bits (80), Expect = 0.033
Identities = 9/33 (27%), Positives = 17/33 (51%)
Query: 325 LDSKPVFLVAATLRPETMYGQTNAWVRPDMAYI 357
++ K V + T RP+T++G T + P+
Sbjct: 11 VEGKEVRIPVFTTRPDTLFGATFLVLAPEHPLT 43
>d1jaea2 c.1.8.1 (A:1-378) Animal alpha-amylase {Yellow mealworm
(Tenebrio molitor), larva [TaxId: 7067]}
Length = 378
Score = 33.0 bits (74), Expect = 0.28
Identities = 26/218 (11%), Positives = 50/218 (22%), Gaps = 7/218 (3%)
Query: 761 IVTSVPSDSPDDYAALVDLKKKPPFREKYHVTDEMCVVALCDQWYLDYGEPTWKAAAE-Q 819
V +V + Y +Y + E
Sbjct: 92 YVDAVINHMTGMNGVGTSGSSADHDGMNYPAVPYGSGDFHSPCEVNNYQDADNVRNCELV 151
Query: 820 CLANMNTYHDEVRRNFGASLNWLHEYAC--SRTYGLGTKLPWDEQWLIESLSDSTIYMAY 877
L ++N D VR +N + + R P D + L + +
Sbjct: 152 GLRDLNQGSDYVRGVLIDYMNHMIDLGVAGFRVDAAKHMSPGDLSVIFSGLKNLNTDYGF 211
Query: 878 YTVAHLLQGGTFRGENGNALNIKAEDLTPEVWDYVFFKAAPFPPKCRVPKAKLDIMRREF 937
A G A++ V ++ F + + L E+
Sbjct: 212 ADGARPFIYQEVIDLGGEAISKNEYTGFGCVLEFQFGVSLGNAFQGGNQLKNLANWGPEW 271
Query: 938 QYWYPVDLRCSGKDLIQNHLTFFIYIHTAIWGDEPEMW 975
+D + NH + P+ +
Sbjct: 272 GLLEGLDAVV----FVDNHDNQRTGGSQILTYKNPKPY 305
Score = 31.0 bits (69), Expect = 1.3
Identities = 23/164 (14%), Positives = 43/164 (26%), Gaps = 3/164 (1%)
Query: 468 CLANMNTYHDEVRRNFGASLNWLHEYAC--SRTYGLGTKLPWDEQWLIESLSDSTIYMAY 525
L ++N D VR +N + + R P D + L + +
Sbjct: 152 GLRDLNQGSDYVRGVLIDYMNHMIDLGVAGFRVDAAKHMSPGDLSVIFSGLKNLNTDYGF 211
Query: 526 YTVAHLLQGGTFRGENGNALNIKAEDLTPEVWDYVFFKSAPFPPKCRVPKAKLDIMRREF 585
A G A++ V ++ F S + L E+
Sbjct: 212 ADGARPFIYQEVIDLGGEAISKNEYTGFGCVLEFQFGVSLGNAFQGGNQLKNLANWGPEW 271
Query: 586 QYWYPVDLRCSGKVSTKLPWDEQWLIESLSDSTIYMAY-YTVAH 628
+D ++ + MA + +AH
Sbjct: 272 GLLEGLDAVVFVDNHDNQRTGGSQILTYKNPKPYKMAIAFMLAH 315
>d2d5ba1 a.27.1.1 (A:349-500) Methionyl-tRNA synthetase (MetRS)
{Thermus thermophilus [TaxId: 274]}
Length = 152
Score = 30.2 bits (67), Expect = 0.97
Identities = 16/94 (17%), Positives = 28/94 (29%), Gaps = 8/94 (8%)
Query: 1438 EHVEMNLKIKETEDHYTKMLFKEALRTGFFELQAARDKYRELTAAEGGMHRT-------- 1489
E E ++ F AL ++A E E
Sbjct: 32 ELAEGTGLAGRLRPLVRELKFHVALEEAMAYVKALNRYINEKKPWELFKKEPEEARAVLY 91
Query: 1490 LVLRFVEVQALLLCPVCPHVAEHVYQLLGKKGSI 1523
V+ + + ++LL P P + + LG K +
Sbjct: 92 RVVEGLRIASILLTPAMPDKMAELRRALGLKEEV 125
Score = 29.8 bits (66), Expect = 1.5
Identities = 18/123 (14%), Positives = 38/123 (30%), Gaps = 11/123 (8%)
Query: 1126 DKVFLSEMNLKIKETEDHYTKMLFKEALRTGFFELQAARDKYRELTAAEGGMHRT----- 1180
L+E ++ F AL ++A E E
Sbjct: 29 AGEELAEGTGLAGRLRPLVRELKFHVALEEAMAYVKALNRYINEKKPWELFKKEPEEARA 88
Query: 1181 ---LVLRFVEVQALLLCPVCPHVAEHVYQLLGKD---LIQNHLTFFIYIHTAIWGDEPEM 1234
V+ + + ++LL P P + + LG ++ + + I + P +
Sbjct: 89 VLYRVVEGLRIASILLTPAMPDKMAELRRALGLKEEVRLEEAERWGLAEPRPIPEEAPVL 148
Query: 1235 WPR 1237
+P+
Sbjct: 149 FPK 151
Score = 27.5 bits (60), Expect = 9.4
Identities = 16/95 (16%), Positives = 28/95 (29%), Gaps = 8/95 (8%)
Query: 1362 DKVFLSEMNLKIKETEDHYTKMLFKEALRTGFFELQAARDKYRELTAAEGGMHRT----- 1416
L+E ++ F AL ++A E E
Sbjct: 29 AGEELAEGTGLAGRLRPLVRELKFHVALEEAMAYVKALNRYINEKKPWELFKKEPEEARA 88
Query: 1417 ---LVLRFVEVQALLLCPVCPHVAEHVEMNLKIKE 1448
V+ + + ++LL P P + L +KE
Sbjct: 89 VLYRVVEGLRIASILLTPAMPDKMAELRRALGLKE 123
>d1iq0a2 c.26.1.1 (A:97-466) Arginyl-tRNA synthetase (ArgRS) {Thermus
thermophilus [TaxId: 274]}
Length = 370
Score = 31.4 bits (70), Expect = 0.98
Identities = 12/102 (11%), Positives = 32/102 (31%), Gaps = 2/102 (1%)
Query: 1199 HVAEHVYQLLGKDLIQNHLTFFIYIHTAIWGDEPEMWPRGIRANGHLLLNSAKMSKSEGN 1258
AE ++ + + A +LL +MS +G
Sbjct: 248 PKAEETINVVDVR-QSHPQALVRAALALAGYPALAEKAHHL-AYETVLLEGRQMSGRKGL 305
Query: 1259 FLTLTEAVKKFSADGMRLCLADSGDSVEDANFVESMADAAVK 1300
+++ E +++ + + + D + +A A++
Sbjct: 306 AVSVDEVLEEATRRARAIVEEKNPDHPDKEEAARMVALGAIR 347
Score = 30.3 bits (67), Expect = 1.9
Identities = 29/279 (10%), Positives = 60/279 (21%), Gaps = 24/279 (8%)
Query: 789 YHVTD-----EMCVVALCDQWYLDYGEPTWKAAAEQCLANMNTYHDEVRRNFGASLNWLH 843
++ D + AL + L + E R A LH
Sbjct: 51 NYIDDTGRQAAETLFAL-RHYGLTWDGKEKYDHFAGRAYVRLHQDPEYERLQPAIEEVLH 109
Query: 844 EYACSRTYGLGTKLPWDEQWLIESLSDSTIYMAYYTVAHLLQGGTFRGENGNALNIKAED 903
++ + + +L+ + + +
Sbjct: 110 ALERGELREEVNRILLAQMATMHALNARYDLLVWESDIVRAGLLQKALALLEQSPHVFRP 169
Query: 904 LTPEVWDYVFFKAAPFPPKCRVPKAKLDIMRREFQYWYPVDLRCSGKDLIQNHLTFFIYI 963
+ + A+P P P L Y + +
Sbjct: 170 REGKYAGALVMDASPVIPGLEDPFFVLLRSNGTATY----------------YAKDIAFQ 213
Query: 964 HTAIWGDEPEMWPRGIRANGHLLLNSAKDLIQNHLTFFIYKLFSDLIQN-HLTFFIYIHT 1022
+ E + L SA + D+ Q+
Sbjct: 214 FWKMGILEGLRFRPYENPYYPGLRTSAPEGEAYTPKAEETINVVDVRQSHPQALVRAALA 273
Query: 1023 AIWGDEPEMWPRGIRANGHLLLNSAKMSKSEGNFLTLTE 1061
+ A +LL +MS +G +++ E
Sbjct: 274 LAGYPALAEKAHHL-AYETVLLEGRQMSGRKGLAVSVDE 311
>d1udza_ b.51.1.1 (A:) Isoleucyl-tRNA synthetase (IleRS) {Thermus
thermophilus [TaxId: 274]}
Length = 179
Score = 30.7 bits (68), Expect = 1.0
Identities = 12/37 (32%), Positives = 16/37 (43%)
Query: 362 LDSKPVFLVAATLRPETMYGQTNAWVRPDMAYIAFTT 398
L + L+ T P T+ G A V P+ Y AF
Sbjct: 15 LGLEKASLLIWTTTPWTLPGNVAAAVHPEYTYAAFQV 51
Score = 30.3 bits (67), Expect = 1.4
Identities = 10/33 (30%), Positives = 14/33 (42%)
Query: 325 LDSKPVFLVAATLRPETMYGQTNAWVRPDMAYI 357
L + L+ T P T+ G A V P+ Y
Sbjct: 15 LGLEKASLLIWTTTPWTLPGNVAAAVHPEYTYA 47
>d1tg7a5 c.1.8.14 (A:41-394) Beta-galactosidase LacA, N-terminal
domain {Penicillium sp. [TaxId: 5081]}
Length = 354
Score = 30.9 bits (69), Expect = 1.1
Identities = 31/202 (15%), Positives = 62/202 (30%), Gaps = 26/202 (12%)
Query: 459 PTWKAAAEQCLANM-NTYHDEVRRNFGASLNW--LHEYACSRTYGLGTKLPWDEQWLIES 515
+ A + +N+ T N G + + +EY+ + G Q++ +
Sbjct: 124 EAYLKATDNYASNIAATIAKAQITNGGPIILYQPENEYSGACCGYNGFPDGSYMQYIEDH 183
Query: 516 LSDSTIYMAYYTVAHLLQGGTFRGENGNALNIKAEDLTPEVWDYVFFKSAPFPPKCRVPK 575
D+ I + + + G G A++I D P +D + P
Sbjct: 184 ARDAGIVVPFISNDAWAAGHNAPGTGAGAVDIYGHDSYPLGFDCANPSTWPSGNLPTYFH 243
Query: 576 AKLD-------IMRREFQ------YWYPVDLRCSGKVSTKLPWDEQWLIESLSDSTI--Y 620
+ EFQ + +C+ ++ + S + + Y
Sbjct: 244 TSHEQQSPSTPYSLVEFQGGAFDPWGGVGFAKCAALLNHEFERVFYKNDFSFGVAFLNLY 303
Query: 621 MAYYTVAHLLQGGTFRGENGNA 642
M + GGT G G+
Sbjct: 304 MIF--------GGTNWGNLGHP 317
Score = 29.4 bits (65), Expect = 3.6
Identities = 22/163 (13%), Positives = 44/163 (26%), Gaps = 3/163 (1%)
Query: 783 PPFREKYHVTDEMCVVALCDQWYLDYGEPTWKAAAEQCLANM-NTYHDEVRRNFGASLNW 841
P+ L + + A + +N+ T N G + +
Sbjct: 96 GPYINAEVSGGGFPGWLQRVDGILRTSDEAYLKATDNYASNIAATIAKAQITNGGPIILY 155
Query: 842 --LHEYACSRTYGLGTKLPWDEQWLIESLSDSTIYMAYYTVAHLLQGGTFRGENGNALNI 899
+EY+ + G Q++ + D+ I + + + G G A++I
Sbjct: 156 QPENEYSGACCGYNGFPDGSYMQYIEDHARDAGIVVPFISNDAWAAGHNAPGTGAGAVDI 215
Query: 900 KAEDLTPEVWDYVFFKAAPFPPKCRVPKAKLDIMRREFQYWYP 942
D P +D P + Y
Sbjct: 216 YGHDSYPLGFDCANPSTWPSGNLPTYFHTSHEQQSPSTPYSLV 258
>d1pfva1 a.27.1.1 (A:389-550) Methionyl-tRNA synthetase (MetRS)
{Escherichia coli [TaxId: 562]}
Length = 162
Score = 29.7 bits (66), Expect = 1.7
Identities = 16/110 (14%), Positives = 31/110 (28%), Gaps = 10/110 (9%)
Query: 1126 DKVFLSEMNLKIKETEDHYTKMLFKEALRTGFFELQAA----------RDKYRELTAAEG 1175
D + + + F +A+R A +E A+
Sbjct: 26 DPQLYKTFTDAAEVIGEAWESREFGKAVREIMALADLANRYVDEQAPWVVAKQEGRDADL 85
Query: 1176 GMHRTLVLRFVEVQALLLCPVCPHVAEHVYQLLGKDLIQNHLTFFIYIHT 1225
++ + V L PV P + E L +L + + + H
Sbjct: 86 QAICSMGINLFRVLMTYLKPVLPKLTERAEAFLNTELTWDGIQQPLLGHK 135
>d1frfl_ e.18.1.1 (L:) Nickel-iron hydrogenase, large subunit
{Desulfovibrio fructosovorans [TaxId: 878]}
Length = 543
Score = 30.1 bits (67), Expect = 2.2
Identities = 13/64 (20%), Positives = 24/64 (37%), Gaps = 2/64 (3%)
Query: 1010 IQNHLTFFIYIHTAIWGDEPEMWP--RGIRANGHLLLNSAKMSKSEGNFLTLTEAVKKFS 1067
+ +HL F ++H W D A +++A+ SE + + +K F
Sbjct: 106 LHDHLVHFYHLHALDWVDVTAALKADPNKAAKLAASIDTARTGNSEKALKAVQDKLKAFV 165
Query: 1068 ADGM 1071
G
Sbjct: 166 ESGQ 169
Score = 30.1 bits (67), Expect = 2.2
Identities = 13/64 (20%), Positives = 24/64 (37%), Gaps = 2/64 (3%)
Query: 1213 IQNHLTFFIYIHTAIWGDEPEMWP--RGIRANGHLLLNSAKMSKSEGNFLTLTEAVKKFS 1270
+ +HL F ++H W D A +++A+ SE + + +K F
Sbjct: 106 LHDHLVHFYHLHALDWVDVTAALKADPNKAAKLAASIDTARTGNSEKALKAVQDKLKAFV 165
Query: 1271 ADGM 1274
G
Sbjct: 166 ESGQ 169
>d1wp0a1 c.47.1.10 (A:138-297) Thioredoxin-like protein Sco1 (YpmQ),
soluble domain {Human (Homo sapiens) [TaxId: 9606]}
Length = 160
Score = 29.3 bits (64), Expect = 2.3
Identities = 20/133 (15%), Positives = 41/133 (30%), Gaps = 11/133 (8%)
Query: 104 HLGHTFSLSKCEFSVRFNRLKGKRVLFPFGFHCTGMPIKACADKLKREMESFGFPPQFPS 163
H G + G+ +L FGF +K+ + ++ P
Sbjct: 8 HTGERKTDKD---------YLGQWLLIYFGFTHCPDVCPEELEKMIQVVDEIDSITTLPD 58
Query: 164 EDTEPQTDKDDDD--PVIKDKSKGKKSKAVAKAGSAKYQWQIMQSLGLEDDEIRKFADAS 221
+ + D I + K K V G+ + Q+ ++ + K D
Sbjct: 59 LTPLFISIDPERDTKEAIANYVKEFSPKLVGLTGTREEVDQVARAYRVYYSPGPKDEDED 118
Query: 222 HWLDHFPPLAVQD 234
+ +DH + +
Sbjct: 119 YIVDHTIIMYLIG 131
>d3ct6a1 c.54.1.2 (A:1-123) PTS-dependent dihydroxyacetone kinase,
phosphotransferase subunit DhaM {Lactococcus lactis
[TaxId: 1358]}
Length = 123
Score = 27.4 bits (61), Expect = 6.1
Identities = 11/47 (23%), Positives = 22/47 (46%), Gaps = 1/47 (2%)
Query: 1258 NFLTLTEAVKKFSADGMRLCLADSGDSVEDANFVESMADAAVKKFSA 1304
+F + A+++ AD + L D G + + + V M D + F+
Sbjct: 45 SFDRVMNAIEENEADNL-LTFFDLGSARMNLDLVSEMTDKELTIFNV 90
>d1f8ya_ c.23.14.1 (A:) Nucleoside 2-deoxyribosyltransferase
{Lactobacillus leichmannii [TaxId: 28039]}
Length = 156
Score = 27.7 bits (61), Expect = 8.7
Identities = 6/54 (11%), Positives = 13/54 (24%), Gaps = 1/54 (1%)
Query: 254 NPFFDSFVRWQFMRLRDR-HKIKYGKRYTVFSPRDNQPCMDHDRASGEGVGPQE 306
+F + + + + P DNQ E + +
Sbjct: 9 AGWFTDRQNKAYKEAMEALKENPTIDLENSYVPLDNQYKGIRVDEHPEYLHDKV 62
>d2bdua1 c.108.1.21 (A:7-297) Cytosolic 5'-nucleotidase III {Mouse
(Mus musculus) [TaxId: 10090]}
Length = 291
Score = 28.0 bits (62), Expect = 9.4
Identities = 25/179 (13%), Positives = 50/179 (27%), Gaps = 28/179 (15%)
Query: 560 VFFKSAPFPPKCRVPKAKLDIMRREFQYWYPVDLRCSGKVSTKLPWDEQWLIESLSDSTI 619
+ +CR + + + +Y +++ V K P+ +W +S
Sbjct: 64 IIDNCKLVTDECR------RKLLQLKEQYYAIEVDPVLTVEEKFPYMVEWYTKS------ 111
Query: 620 YMAYYTVAHLLQGGT-------FRGENGNALNINCVIVFQVLPYDPVPIIQVPEYGNLCA 672
L++ G ++ L F L +P+
Sbjct: 112 ------HGLLIEQGIPKAKLKEIVADSDVMLKEGYENFFGKLQQHGIPVFIFSAGIGDVL 165
Query: 673 VTVYEKLKIQSQNDKDKL--QEAKELVYLKGFYDGIMLVGEFKGKKVQEVKKLLQKKID 729
V + + N K + E LKGF G ++ K + + D
Sbjct: 166 EEVIRQAGVYHSNVKVVSNFMDFDENGVLKGF-KGELIHVFNKHDGALKNTDYFSQLKD 223
>d2i5nl1 f.26.1.1 (L:1-273) L (light) subunit {Rhodopseudomonas
viridis [TaxId: 1079]}
Length = 273
Score = 28.1 bits (63), Expect = 9.6
Identities = 7/19 (36%), Positives = 9/19 (47%)
Query: 489 WLHEYACSRTYGLGTKLPW 507
L E SR G+G +P
Sbjct: 101 MLREVEISRKLGIGWHVPL 119
Score = 28.1 bits (63), Expect = 9.6
Identities = 7/19 (36%), Positives = 9/19 (47%)
Query: 841 WLHEYACSRTYGLGTKLPW 859
L E SR G+G +P
Sbjct: 101 MLREVEISRKLGIGWHVPL 119
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.321 0.136 0.423
Gapped
Lambda K H
0.267 0.0673 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 6,269,128
Number of extensions: 308682
Number of successful extensions: 846
Number of sequences better than 10.0: 1
Number of HSP's gapped: 836
Number of HSP's successfully gapped: 65
Length of query: 1618
Length of database: 2,407,596
Length adjustment: 98
Effective length of query: 1520
Effective length of database: 1,062,056
Effective search space: 1614325120
Effective search space used: 1614325120
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 59 (26.6 bits)