BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= psy531
         (80 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|Q967D7|TUTL_DROME Protein turtle OS=Drosophila melanogaster GN=tutl PE=2 SV=2
          Length = 1531

 Score = 68.9 bits (167), Expect = 9e-12,   Method: Composition-based stats.
 Identities = 27/37 (72%), Positives = 33/37 (89%)

Query: 39  NAVHITALLGESVVFNCGVDFPGDTPVPYVLQWEKKI 75
           +AVHITA+LGE V+FNC V+FP D PVPYVLQW+KK+
Sbjct: 134 DAVHITAILGEGVIFNCHVEFPNDHPVPYVLQWDKKV 170


>sp|Q9UPX0|TUTLB_HUMAN Protein turtle homolog B OS=Homo sapiens GN=IGSF9B PE=2 SV=2
          Length = 1349

 Score = 32.3 bits (72), Expect = 0.87,   Method: Composition-based stats.
 Identities = 16/32 (50%), Positives = 19/32 (59%), Gaps = 1/32 (3%)

Query: 43 ITALLGESVVFNCGVDFP-GDTPVPYVLQWEK 73
          +TA  GESVV  C V  P    P PYV++W K
Sbjct: 33 VTARAGESVVLRCDVIHPVTGQPPPYVVEWFK 64


>sp|O27855|NADA_METTH Quinolinate synthase A OS=Methanothermobacter thermautotrophicus
          (strain ATCC 29096 / DSM 1053 / JCM 10044 / NBRC 100330
          / Delta H) GN=nadA PE=3 SV=1
          Length = 304

 Score = 29.3 bits (64), Expect = 6.6,   Method: Composition-based stats.
 Identities = 18/53 (33%), Positives = 30/53 (56%), Gaps = 4/53 (7%)

Query: 24 IITLVHFKGVSPDISNAVHITALLGESVVFNCGVDFPGDTPVPYVLQWEKKIV 76
          I  +  FKG S ++   +  + + G+ +V  CGVDF  +T   Y+L  +KKI+
Sbjct: 30 IQEIADFKGDSLEL--CIEASRIEGKDIVVFCGVDFMAET--AYILNPDKKIL 78


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.324    0.140    0.439 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 30,972,955
Number of Sequences: 539616
Number of extensions: 1008387
Number of successful extensions: 2027
Number of sequences better than 100.0: 4
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 2025
Number of HSP's gapped (non-prelim): 5
length of query: 80
length of database: 191,569,459
effective HSP length: 51
effective length of query: 29
effective length of database: 164,049,043
effective search space: 4757422247
effective search space used: 4757422247
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 55 (25.8 bits)