Query psy531
Match_columns 80
No_of_seqs 36 out of 38
Neff 2.8
Searched_HMMs 46136
Date Fri Aug 16 23:19:20 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy531.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/531hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd07693 Ig1_Robo First immunog 97.7 7.5E-05 1.6E-09 44.3 4.3 36 38-77 6-41 (100)
2 cd05762 Ig8_MLCK Eighth immuno 97.7 5.3E-05 1.1E-09 48.1 3.7 38 37-78 4-41 (98)
3 cd05724 Ig2_Robo Second immuno 97.6 0.00015 3.3E-09 42.8 4.4 37 38-77 1-37 (86)
4 cd04973 Ig1_FGFR First immunog 97.5 0.00015 3.2E-09 43.8 3.5 33 40-77 1-33 (79)
5 cd05730 Ig3_NCAM-1_like Third 97.4 0.0002 4.3E-09 43.8 3.7 37 37-77 7-43 (95)
6 cd05749 Ig2_Tyro3_like Second 97.4 0.00026 5.7E-09 44.2 3.9 38 38-78 3-40 (81)
7 cd05712 Ig_Siglec_N Immunoglob 97.3 0.00039 8.3E-09 45.1 4.4 38 38-75 4-43 (119)
8 cd05728 Ig4_Contactin-2-like F 97.3 0.00028 6.1E-09 42.9 3.2 37 38-78 4-40 (85)
9 cd05722 Ig1_Neogenin First imm 97.3 0.0004 8.7E-09 42.6 3.6 36 38-77 4-39 (95)
10 cd05747 Ig5_Titin_like M5, fif 97.2 0.00049 1.1E-08 42.2 3.7 37 37-77 7-43 (92)
11 cd05873 Ig_Sema4D_like Immunog 97.2 0.00055 1.2E-08 44.0 4.0 35 38-77 1-35 (87)
12 cd05891 Ig_M-protein_C C-termi 97.2 0.00056 1.2E-08 42.5 3.7 36 38-77 6-41 (92)
13 cd05737 Ig_Myomesin_like_C C-t 97.1 0.00064 1.4E-08 41.8 3.5 35 39-77 7-41 (92)
14 cd04972 Ig_TrkABC_d4 Fourth do 97.1 0.00073 1.6E-08 41.2 3.4 36 38-77 5-40 (90)
15 cd04975 Ig4_SCFR_like Fourth i 97.1 0.00073 1.6E-08 43.7 3.4 35 40-78 10-45 (101)
16 cd04979 Ig_Semaphorin_C Immuno 97.0 0.0014 3.1E-08 39.8 4.3 35 38-77 1-35 (89)
17 cd05851 Ig3_Contactin-1 Third 97.0 0.0014 3.1E-08 40.4 4.0 36 38-77 6-41 (88)
18 PF07679 I-set: Immunoglobulin 96.9 0.0011 2.3E-08 39.2 3.2 36 38-77 5-40 (90)
19 cd04982 IgV_TCR_gamma Immunogl 96.9 0.0017 3.6E-08 41.0 4.1 37 37-75 2-38 (116)
20 cd05752 Ig1_FcgammaR_like Frst 96.9 0.0015 3.3E-08 40.2 3.8 37 38-77 5-41 (78)
21 cd04968 Ig3_Contactin_like Thi 96.9 0.0013 2.9E-08 39.7 3.3 36 38-77 6-41 (88)
22 cd05859 Ig4_PDGFR-alpha Fourth 96.9 0.00097 2.1E-08 42.9 2.8 32 42-77 12-43 (101)
23 cd04983 IgV_TCR_alpha_like Imm 96.9 0.0016 3.5E-08 40.2 3.7 35 37-75 2-36 (109)
24 cd05894 Ig_C5_MyBP-C C5 immuno 96.9 0.0016 3.5E-08 40.3 3.7 33 42-78 4-36 (86)
25 cd05856 Ig2_FGFRL1-like Second 96.8 0.0014 3.1E-08 37.9 3.1 32 42-77 3-34 (82)
26 cd05870 Ig5_NCAM-2 Fifth immun 96.8 0.0021 4.5E-08 39.9 3.6 32 39-74 7-38 (98)
27 cd05758 Ig5_KIRREL3-like Fifth 96.7 0.0029 6.3E-08 39.2 3.9 35 40-77 8-42 (98)
28 cd07706 IgV_TCR_delta Immunogl 96.6 0.0027 5.9E-08 40.3 3.6 36 37-75 3-38 (116)
29 cd05882 Ig1_Necl-1 First (N-te 96.6 0.0027 5.8E-08 40.7 3.4 32 41-76 5-36 (95)
30 cd00099 IgV Immunoglobulin var 96.6 0.0026 5.7E-08 38.6 3.0 31 43-76 1-31 (105)
31 cd05754 Ig3_Perlecan_like Thir 96.5 0.0053 1.1E-07 36.8 4.2 38 37-77 5-42 (85)
32 cd05729 Ig2_FGFR_like Second i 96.5 0.0051 1.1E-07 35.5 3.8 32 42-77 3-34 (85)
33 smart00410 IG_like Immunoglobu 96.5 0.0059 1.3E-07 33.4 3.8 31 40-74 1-31 (86)
34 smart00409 IG Immunoglobulin. 96.5 0.0059 1.3E-07 33.4 3.8 31 40-74 1-31 (86)
35 cd05745 Ig3_Peroxidasin Third 96.4 0.0036 7.7E-08 36.9 2.8 28 47-78 1-28 (74)
36 cd04980 IgV_L_kappa Immunoglob 96.4 0.0052 1.1E-07 38.5 3.7 36 37-75 4-39 (106)
37 cd05732 Ig5_NCAM-1_like Fifth 96.4 0.0044 9.5E-08 37.4 3.2 34 39-76 7-40 (96)
38 cd05867 Ig4_L1-CAM_like Fourth 96.4 0.0037 8.1E-08 37.0 2.7 26 48-77 1-26 (76)
39 cd05715 Ig_P0-like Immunoglobu 96.3 0.011 2.3E-07 37.9 4.6 37 39-75 4-40 (116)
40 cd05857 Ig2_FGFR Second immuno 96.2 0.009 1.9E-07 35.3 3.9 30 44-77 5-34 (85)
41 cd05848 Ig1_Contactin-5 First 96.2 0.0076 1.6E-07 37.7 3.5 35 39-77 7-44 (94)
42 cd05880 Ig_EVA1 Immunoglobulin 96.2 0.012 2.6E-07 38.3 4.6 36 39-74 4-39 (115)
43 cd05865 Ig1_NCAM-1 First immun 96.2 0.0072 1.6E-07 38.6 3.4 37 37-76 4-41 (96)
44 cd05850 Ig1_Contactin-2 First 96.1 0.0083 1.8E-07 37.4 3.5 36 39-78 7-45 (94)
45 cd05765 Ig_3 Subgroup of the i 96.1 0.0091 2E-07 34.8 3.2 25 48-76 1-25 (81)
46 PF07686 V-set: Immunoglobulin 96.0 0.013 2.7E-07 34.9 3.8 35 39-76 7-41 (114)
47 PF00047 ig: Immunoglobulin do 96.0 0.007 1.5E-07 33.9 2.5 28 48-78 1-28 (64)
48 cd05739 Ig3_RPTP_IIa_LAR_like 96.0 0.0084 1.8E-07 35.8 2.9 26 48-77 1-26 (69)
49 cd04978 Ig4_L1-NrCAM_like Four 96.0 0.0095 2.1E-07 34.4 3.0 26 48-77 1-26 (76)
50 cd07701 Ig1_Necl-3 First (N-te 96.0 0.011 2.3E-07 37.4 3.5 30 40-73 4-33 (95)
51 cd05717 Ig1_Necl-1-3_like Firs 95.9 0.013 2.8E-07 35.9 3.5 30 40-73 4-33 (95)
52 cd05852 Ig5_Contactin-1 Fifth 95.9 0.01 2.2E-07 35.9 3.0 26 48-77 1-26 (73)
53 cd04977 Ig1_NCAM-1_like First 95.9 0.0094 2E-07 37.0 2.9 34 38-76 5-39 (92)
54 cd05740 Ig_CEACAM_D4 Fourth im 95.8 0.013 2.8E-07 36.8 3.4 36 37-77 7-42 (91)
55 cd05899 IgV_TCR_beta Immunoglo 95.8 0.013 2.7E-07 37.0 3.3 35 37-76 2-36 (110)
56 cd05866 Ig1_NCAM-2 First immun 95.8 0.0091 2E-07 38.0 2.6 32 38-74 5-36 (92)
57 cd04969 Ig5_Contactin_like Fif 95.7 0.012 2.7E-07 34.4 2.9 26 48-77 1-26 (73)
58 cd05878 Ig_Aggrecan_like Immun 95.5 0.015 3.3E-07 37.6 3.0 28 47-74 1-34 (110)
59 cd05902 Ig_Neurocan Immunoglob 95.5 0.015 3.2E-07 38.7 2.9 28 47-74 1-31 (110)
60 PHA02826 IL-1 receptor-like pr 95.5 0.031 6.6E-07 41.1 4.7 38 39-76 28-72 (227)
61 cd04974 Ig3_FGFR Third immunog 95.4 0.018 3.9E-07 35.4 3.0 24 48-75 1-24 (90)
62 cd05716 Ig_pIgR Immunoglobulin 95.4 0.031 6.7E-07 34.3 3.8 31 43-76 2-32 (98)
63 PF13895 Ig_2: Immunoglobulin 95.1 0.025 5.5E-07 31.8 2.7 31 43-77 9-39 (80)
64 cd05858 Ig3_FGFR-2 Third immun 95.0 0.038 8.2E-07 33.7 3.4 24 48-75 1-24 (90)
65 cd04967 Ig1_Contactin First Ig 94.9 0.033 7.2E-07 33.9 3.1 29 45-77 16-44 (91)
66 cd07690 Ig1_CD4 First immunogl 94.9 0.044 9.6E-07 35.4 3.8 29 43-75 2-30 (94)
67 cd05743 Ig_Perlecan_D2_like Im 94.8 0.03 6.5E-07 33.3 2.6 26 48-77 1-26 (78)
68 cd05869 Ig5_NCAM-1 Fifth immun 94.7 0.044 9.5E-07 33.9 3.3 29 45-77 14-42 (97)
69 cd05726 Ig4_Robo Fhird immunog 94.7 0.047 1E-06 33.2 3.4 26 48-77 1-26 (90)
70 cd05756 Ig1_IL1R_like First im 94.6 0.071 1.5E-06 33.7 4.1 35 42-77 8-44 (94)
71 cd05853 Ig6_Contactin-4 Sixth 94.6 0.046 9.9E-07 34.9 3.1 28 49-78 1-28 (85)
72 cd05735 Ig8_DSCAM Eight immuno 94.6 0.053 1.2E-06 33.4 3.3 26 48-77 1-26 (88)
73 cd05868 Ig4_NrCAM Fourth immun 94.4 0.04 8.7E-07 32.9 2.5 26 48-77 1-26 (76)
74 cd05714 Ig_CSPGs_LP Immunoglob 94.4 0.051 1.1E-06 33.8 3.0 29 47-75 1-31 (106)
75 cd05861 Ig1_PDGFR-alphabeta Fr 94.3 0.057 1.2E-06 33.0 3.1 26 48-77 1-26 (84)
76 cd05760 Ig2_PTK7 Second immuno 94.3 0.032 7E-07 33.3 1.8 23 51-77 1-23 (77)
77 cd05849 Ig1_Contactin-1 First 94.2 0.077 1.7E-06 33.3 3.5 29 45-77 16-44 (93)
78 cd05872 Ig_Sema4B_like Immunog 94.2 0.082 1.8E-06 34.0 3.7 32 41-77 4-35 (85)
79 cd05746 Ig4_Peroxidasin Fourth 94.2 0.035 7.7E-07 32.3 1.8 23 51-77 1-23 (69)
80 PHA02785 IL-beta-binding prote 94.1 0.076 1.6E-06 40.3 3.9 38 38-77 225-263 (326)
81 PHA03376 BARF1; Provisional 94.1 0.11 2.5E-06 40.1 4.9 33 42-76 20-53 (221)
82 cd05773 Ig8_hNephrin_like Eigh 94.1 0.077 1.7E-06 34.1 3.4 28 46-77 21-48 (109)
83 smart00408 IGc2 Immunoglobulin 94.0 0.094 2E-06 27.3 3.1 27 47-77 1-27 (63)
84 cd05871 Ig_Semaphorin_classIII 93.9 0.1 2.2E-06 32.9 3.6 29 42-75 5-33 (91)
85 cd04970 Ig6_Contactin_like Six 93.9 0.067 1.5E-06 32.1 2.7 26 49-77 1-27 (85)
86 cd05845 Ig2_L1-CAM_like Second 93.6 0.16 3.4E-06 33.4 4.4 38 37-77 7-44 (95)
87 PHA02982 hypothetical protein; 93.5 0.09 2E-06 41.3 3.5 59 13-74 4-62 (251)
88 cd05896 Ig1_IL1RAPL-1_like Fir 93.5 0.17 3.6E-06 34.5 4.4 37 41-77 8-51 (104)
89 cd05881 Ig1_Necl-2 First (N-te 93.5 0.12 2.5E-06 33.8 3.5 31 41-75 5-35 (95)
90 cd05713 Ig_MOG_like Immunoglob 93.4 0.12 2.6E-06 31.6 3.3 27 48-75 1-27 (100)
91 cd05757 Ig2_IL1R_like Second i 93.3 0.12 2.7E-06 32.8 3.3 34 44-78 6-41 (92)
92 PHA02826 IL-1 receptor-like pr 93.2 0.15 3.4E-06 37.4 4.2 36 41-77 137-174 (227)
93 cd05718 Ig1_PVR_like First imm 93.2 0.1 2.3E-06 31.5 2.7 27 49-76 1-27 (98)
94 cd05753 Ig2_FcgammaR_like Seco 93.1 0.16 3.5E-06 31.1 3.6 31 44-77 10-40 (83)
95 cd05733 Ig6_L1-CAM_like Sixth 92.7 0.11 2.4E-06 31.0 2.3 23 51-77 1-23 (77)
96 cd05725 Ig3_Robo Third immunog 92.5 0.15 3.2E-06 29.4 2.6 23 51-77 1-23 (69)
97 cd05723 Ig4_Neogenin Fourth im 92.4 0.12 2.6E-06 30.3 2.2 24 50-77 1-24 (71)
98 cd05875 Ig6_hNeurofascin_like 92.4 0.13 2.9E-06 31.0 2.4 23 51-77 1-23 (77)
99 cd05877 Ig_LP_like Immunoglobu 92.2 0.22 4.8E-06 30.8 3.3 29 47-75 1-31 (106)
100 cd04976 Ig2_VEGFR Second immun 92.1 0.1 2.2E-06 30.9 1.7 24 51-78 1-24 (71)
101 cd05764 Ig_2 Subgroup of the i 92.1 0.26 5.7E-06 28.4 3.3 25 48-76 1-26 (74)
102 cd05863 Ig2_VEGFR-3 Second imm 91.4 0.14 2.9E-06 31.1 1.7 24 51-78 1-24 (67)
103 cd04984 IgV_L_lambda Immunoglo 91.4 0.21 4.6E-06 30.7 2.6 31 43-76 1-32 (98)
104 cd05892 Ig_Myotilin_C C-termin 91.2 0.17 3.7E-06 30.9 1.9 23 51-77 1-23 (75)
105 cd05742 Ig1_VEGFR_like First i 91.1 0.32 6.9E-06 29.0 3.1 28 48-77 1-28 (84)
106 cd05738 Ig2_RPTP_IIa_LAR_like 91.0 0.17 3.7E-06 29.8 1.8 23 51-77 1-23 (74)
107 cd05901 Ig_Versican Immunoglob 90.9 0.31 6.6E-06 33.4 3.2 28 47-74 1-35 (117)
108 cd05893 Ig_Palladin_C C-termin 90.9 0.17 3.7E-06 30.7 1.8 23 51-77 1-23 (75)
109 cd05895 Ig_Pro_neuregulin-1 Im 90.8 0.23 5.1E-06 29.0 2.3 25 51-78 1-25 (76)
110 cd05748 Ig_Titin_like Immunogl 90.7 0.25 5.4E-06 28.6 2.3 23 51-77 2-24 (74)
111 cd07700 IgV_CD8_beta Immunoglo 90.6 0.33 7.2E-06 30.7 3.0 31 43-76 1-31 (107)
112 cd05879 Ig_P0 Immunoglobulin ( 90.6 0.72 1.6E-05 30.7 4.7 34 40-74 5-39 (116)
113 cd05727 Ig2_Contactin-2-like S 90.6 0.58 1.3E-05 30.8 4.2 35 41-78 11-45 (96)
114 cd05846 Ig1_MRC-OX-2_like Firs 90.5 0.37 7.9E-06 29.9 3.0 25 48-75 1-25 (97)
115 cd05775 Ig_SLAM-CD84_like_N N- 90.3 0.29 6.2E-06 30.8 2.5 27 45-74 1-27 (97)
116 PHA02785 IL-beta-binding prote 90.3 0.24 5.2E-06 37.6 2.5 32 45-77 38-71 (326)
117 cd05900 Ig_Aggrecan Immunoglob 90.1 0.39 8.4E-06 31.9 3.1 29 47-75 1-37 (112)
118 cd05741 Ig_CEACAM_D1_like Firs 90.1 0.43 9.2E-06 28.3 3.0 25 48-76 1-25 (92)
119 cd05720 Ig_CD8_alpha Immunoglo 89.9 0.36 7.8E-06 30.7 2.7 29 44-76 2-30 (104)
120 cd05711 Ig_FcalphaRI Immunoglo 89.9 0.42 9.1E-06 30.0 3.0 28 45-77 12-39 (94)
121 cd05763 Ig_1 Subgroup of the i 89.8 0.36 7.7E-06 28.1 2.5 22 51-76 1-22 (75)
122 cd05874 Ig6_NrCAM Sixth immuno 89.8 0.34 7.4E-06 29.2 2.5 23 51-77 1-23 (77)
123 cd05876 Ig3_L1-CAM Third immun 89.4 0.32 6.9E-06 28.5 2.0 23 51-77 1-23 (71)
124 cd05898 Ig5_KIRREL3 Fifth immu 89.4 0.68 1.5E-05 30.3 3.8 32 42-76 10-41 (98)
125 cd05736 Ig2_Follistatin_like S 89.1 0.34 7.4E-06 28.2 2.0 23 51-77 1-23 (76)
126 cd05744 Ig_Myotilin_C_like Imm 88.8 0.36 7.8E-06 28.8 2.0 24 51-78 1-24 (75)
127 cd05731 Ig3_L1-CAM_like Third 88.8 0.33 7.2E-06 27.4 1.8 23 51-77 1-23 (71)
128 cd05750 Ig_Pro_neuregulin Immu 88.4 0.51 1.1E-05 26.9 2.4 23 52-78 2-25 (75)
129 smart00406 IGv Immunoglobulin 88.4 0.65 1.4E-05 26.2 2.8 25 50-76 1-25 (81)
130 cd05751 Ig1_LILRB1_like First 88.4 0.61 1.3E-05 28.8 2.9 28 45-77 13-40 (91)
131 cd04981 IgV_H Immunoglobulin ( 88.2 0.7 1.5E-05 30.1 3.2 35 38-75 2-37 (117)
132 PHA02987 Ig domain OX-2-like p 87.8 0.77 1.7E-05 34.6 3.6 32 41-75 23-54 (189)
133 cd05860 Ig4_SCFR Fourth immuno 87.4 0.81 1.7E-05 30.9 3.2 34 41-77 11-44 (101)
134 cd05864 Ig2_VEGFR-2 Second imm 87.1 0.42 9.2E-06 28.8 1.6 24 51-78 1-24 (70)
135 cd05854 Ig6_Contactin-2 Sixth 87.0 0.78 1.7E-05 28.1 2.7 26 49-77 1-27 (85)
136 cd00096 Ig Immunoglobulin doma 85.2 1.1 2.4E-05 22.3 2.4 24 51-78 1-24 (74)
137 cd05862 Ig1_VEGFR First immuno 83.9 1.5 3.2E-05 27.0 2.9 27 48-76 1-27 (86)
138 cd05766 IgC_MHC_II_beta Class 83.1 1.1 2.4E-05 28.5 2.2 28 46-77 12-41 (94)
139 PRK00059 prsA peptidylprolyl i 82.5 2.3 5E-05 31.7 4.0 46 12-57 2-51 (336)
140 PF05688 DUF824: Salmonella re 82.2 1.3 2.9E-05 26.6 2.2 27 43-69 7-33 (47)
141 KOG4221|consensus 82.1 2.4 5.1E-05 39.9 4.7 37 39-79 47-83 (1381)
142 cd05774 Ig_CEACAM_D1 First imm 82.0 1.7 3.6E-05 28.6 2.8 29 42-74 7-35 (105)
143 cd07702 Ig2_VEGFR-1 Second imm 81.6 1.1 2.4E-05 27.5 1.7 23 52-78 2-24 (72)
144 cd00098 IgC Immunoglobulin Con 80.4 1.6 3.5E-05 25.9 2.1 30 46-78 11-41 (95)
145 PF07654 C1-set: Immunoglobuli 79.9 1.4 3E-05 26.6 1.7 28 46-77 6-35 (83)
146 KOG3513|consensus 78.3 1.9 4.2E-05 39.4 2.8 37 39-77 522-558 (1051)
147 cd05771 IgC_Tapasin_R Tapasin- 78.2 4.6 0.0001 26.3 4.0 29 47-77 52-80 (139)
148 cd07692 Ig_CD3_epsilon Immunog 77.7 2.9 6.2E-05 26.6 2.7 25 46-77 5-29 (65)
149 PF15183 MRAP: Melanocortin-2 75.2 4.1 8.8E-05 27.9 3.1 34 2-42 41-74 (90)
150 PF13473 Cupredoxin_1: Cupredo 71.0 3.7 7.9E-05 26.0 2.0 16 39-54 33-48 (104)
151 cd05759 Ig2_KIRREL3-like Secon 70.4 4.8 0.0001 23.8 2.3 23 51-77 2-25 (82)
152 cd05755 Ig2_ICAM-1_like Second 70.0 6.5 0.00014 26.1 3.1 31 45-77 13-44 (100)
153 cd05767 IgC_MHC_II_alpha Class 69.2 5.2 0.00011 25.7 2.5 29 45-77 12-42 (94)
154 cd04985 IgC_CH1 CH1 domain (fi 68.5 6.1 0.00013 25.3 2.7 26 48-77 16-43 (95)
155 PF08940 DUF1918: Domain of un 67.3 3.1 6.7E-05 26.3 1.1 19 58-77 29-47 (58)
156 cd05897 Ig2_IL1R2_like Second 66.7 5.6 0.00012 25.9 2.2 30 45-77 7-40 (95)
157 KOG4221|consensus 66.0 8.4 0.00018 36.5 4.0 38 36-77 143-180 (1381)
158 cd05887 Ig1_Nectin-3_like Firs 65.2 8.1 0.00017 25.1 2.8 23 50-75 2-24 (96)
159 cd05761 Ig2_Necl-1-4_like Seco 64.5 10 0.00022 22.9 3.0 24 51-77 2-25 (82)
160 cd05772 IgC_SIRP Signal-regula 59.6 9.4 0.0002 25.2 2.4 29 45-77 18-48 (111)
161 PRK10894 lipopolysaccharide tr 59.5 12 0.00027 26.4 3.1 46 13-58 2-55 (180)
162 cd07691 Ig_CD3_gamma_delta Imm 59.0 11 0.00024 24.4 2.5 21 47-76 5-25 (69)
163 PF03921 ICAM_N: Intercellular 57.9 8.1 0.00018 25.7 1.8 25 37-61 7-31 (91)
164 PF08204 V-set_CD47: CD47 immu 52.9 16 0.00036 25.7 2.8 34 44-77 23-57 (130)
165 cd05886 Ig1_Nectin-1_like Firs 52.7 21 0.00045 23.0 3.1 25 50-74 2-26 (99)
166 PF12028 DUF3515: Protein of u 50.2 16 0.00035 26.1 2.5 30 48-77 78-113 (163)
167 TIGR02925 cis_trans_EpsD pepti 50.0 35 0.00077 24.0 4.2 19 40-58 25-43 (232)
168 cd07697 IgC_TCR_gamma T cell r 49.4 19 0.00042 23.3 2.6 26 48-77 16-43 (96)
169 cd05768 IgC_CH4 CH4 domain (fo 48.0 19 0.00041 23.2 2.3 28 46-77 14-43 (102)
170 cd05889 Ig1_DNAM-1_like First 47.7 26 0.00057 22.6 3.0 24 49-75 1-24 (96)
171 cd07696 IgC_CH3 CH3 domain (th 47.6 25 0.00054 22.5 2.8 27 46-76 12-41 (96)
172 cd05769 IgC_TCR_beta T cell re 47.6 15 0.00031 24.7 1.8 27 47-77 17-45 (115)
173 PF13624 SurA_N_3: SurA N-term 44.4 17 0.00037 23.8 1.7 18 39-56 37-54 (154)
174 cd05847 IgC_CH2_IgE CH2 domain 42.5 30 0.00066 22.0 2.6 26 48-77 14-41 (94)
175 COG5660 Predicted integral mem 40.6 21 0.00046 28.1 2.0 33 12-44 180-212 (238)
176 PF08205 C2-set_2: CD80-like C 40.1 25 0.00055 20.7 1.9 33 42-78 9-41 (89)
177 PF13927 Ig_3: Immunoglobulin 40.1 27 0.00059 18.7 1.9 19 51-72 18-36 (75)
178 cd07705 Ig2_Necl-1 Second immu 39.2 44 0.00096 20.4 2.9 24 51-77 2-25 (83)
179 cd05885 Ig2_Necl-4 Second immu 38.8 45 0.00097 21.1 3.0 25 51-78 2-26 (80)
180 cd07699 IgC_L Immunoglobulin C 37.4 28 0.0006 22.1 1.9 27 47-77 16-44 (100)
181 cd05884 Ig2_Necl-3 Second immu 37.0 47 0.001 20.5 2.8 24 51-77 2-25 (83)
182 cd05888 Ig1_Nectin-4_like Frst 36.5 62 0.0013 20.2 3.3 25 50-75 2-26 (100)
183 PRK15315 outer membrane protei 35.4 35 0.00075 33.5 2.8 42 27-68 456-505 (1865)
184 cd05734 Ig7_DSCAM Seventh immu 34.4 23 0.0005 20.6 1.0 19 51-72 1-19 (79)
185 TIGR02657 amicyanin amicyanin. 33.8 39 0.00085 20.7 2.1 18 37-54 7-24 (83)
186 cd05721 IgV_CTLA-4 Immunoglobu 33.1 70 0.0015 22.1 3.4 32 43-75 8-39 (115)
187 PRK15249 fimbrial chaperone pr 32.5 1.1E+02 0.0025 22.9 4.7 52 19-76 13-68 (253)
188 KOG4194|consensus 31.1 52 0.0011 30.0 3.1 33 42-77 715-747 (873)
189 KOG3513|consensus 29.7 74 0.0016 29.6 3.9 38 37-78 335-372 (1051)
190 cd05770 IgC_beta2m Class I maj 29.3 61 0.0013 20.8 2.5 29 43-72 65-93 (93)
191 TIGR03516 ppisom_GldI peptidyl 29.0 48 0.001 23.8 2.1 24 17-43 5-28 (177)
192 PF15092 UPF0728: Uncharacteri 29.0 55 0.0012 22.3 2.3 22 39-60 48-69 (88)
193 cd07689 Ig2_VCAM-1 Second immu 28.4 66 0.0014 21.8 2.6 27 45-74 12-40 (99)
194 TIGR03352 VI_chp_3 type VI sec 28.3 1.5E+02 0.0033 20.6 4.5 47 18-70 4-52 (146)
195 TIGR02656 cyanin_plasto plasto 28.2 52 0.0011 20.8 2.0 18 37-54 13-30 (99)
196 TIGR03042 PS_II_psbQ_bact phot 27.8 74 0.0016 22.9 2.9 21 14-35 4-24 (142)
197 KOG4222|consensus 27.6 59 0.0013 31.0 2.9 39 37-78 135-173 (1281)
198 KOG3515|consensus 27.5 53 0.0011 29.4 2.5 30 44-76 18-47 (741)
199 PRK02710 plastocyanin; Provisi 27.0 1.2E+02 0.0027 19.9 3.7 16 39-54 45-60 (119)
200 TIGR02375 pseudoazurin pseudoa 26.7 54 0.0012 22.3 2.0 18 37-54 11-28 (116)
201 KOG3073|consensus 26.5 25 0.00054 27.7 0.3 13 44-56 44-56 (236)
202 TIGR02408 ectoine_ThpD ectoine 25.9 44 0.00095 24.8 1.5 19 42-60 212-230 (277)
203 PF15284 PAGK: Phage-encoded v 24.9 37 0.0008 21.8 0.8 12 54-66 42-53 (61)
204 PF07172 GRP: Glycine rich pro 24.5 35 0.00076 22.7 0.7 8 23-30 14-21 (95)
205 KOG4194|consensus 24.5 55 0.0012 29.9 2.1 38 37-76 507-544 (873)
206 PF11153 DUF2931: Protein of u 23.2 99 0.0022 22.1 2.9 18 18-35 4-21 (216)
207 cd05883 Ig2_Necl-2 Second immu 23.1 1.2E+02 0.0025 19.4 2.9 24 51-77 2-25 (82)
208 PF00084 Sushi: Sushi domain ( 22.6 52 0.0011 17.5 1.1 16 45-60 19-34 (56)
209 KOG4222|consensus 22.5 55 0.0012 31.2 1.7 36 40-79 38-73 (1281)
210 COG1952 SecB Preprotein transl 21.4 69 0.0015 23.7 1.8 18 43-60 66-83 (157)
211 PF14509 GH97_C: Glycosyl-hydr 20.6 75 0.0016 21.1 1.7 23 53-76 42-64 (103)
212 COG5510 Predicted small secret 20.2 85 0.0018 19.0 1.7 23 17-39 9-31 (44)
213 PF13623 SurA_N_2: SurA N-term 20.1 2.3E+02 0.0049 19.8 4.1 34 17-51 15-48 (145)
No 1
>cd07693 Ig1_Robo First immunoglobulin (Ig)-like domain in Robo (roundabout) receptors and similar proteins. Ig1_Robo: domain similar to the first immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit res
Probab=97.71 E-value=7.5e-05 Score=44.32 Aligned_cols=36 Identities=22% Similarity=0.532 Sum_probs=30.5
Q ss_pred CCcceEEeecCCeEEEeeecCCCCCCCCceEEEeeecccc
Q psy531 38 SNAVHITALLGESVVFNCGVDFPGDTPVPYVLQWEKKIVK 77 (80)
Q Consensus 38 ~~P~~ltA~vGe~VVlnCdvdfP~~~PiPYVvqW~KdG~~ 77 (80)
+.|..++...|+.|.|.|.+. |.|.| .++|.|+|..
T Consensus 6 ~~p~~~~v~~G~~~~l~C~~~---g~P~p-~i~W~k~g~~ 41 (100)
T cd07693 6 EHPSDLIVSKGDPATLNCKAE---GRPTP-TIQWLKNGQP 41 (100)
T ss_pred ecCceeEEcCCCeEEEEeeCC---cCCCC-EEEEEECCEE
Confidence 567889999999999999886 56777 5899999865
No 2
>cd05762 Ig8_MLCK Eighth immunoglobulin (Ig)-like domain of human myosin light-chain kinase (MLCK). Ig8_MLCK: the eighth immunoglobulin (Ig)-like domain of human myosin light-chain kinase (MLCK). MLCK is a key regulator of different forms of cell motility involving actin and myosin II. Agonist stimulation of smooth muscle cells increases cytosolic Ca2+, which binds calmodulin. This Ca2+-calmodulin complex in turn binds to and activates MLCK. Activated MLCK leads to the phosphorylation of the 20 kDa myosin regulatory light chain (RLC) of myosin II and the stimulation of actin-activated myosin MgATPase activity. MLCK is widely present in vertebrate tissues; it phosphorylates the 20 kDa RLC of both smooth and nonmuscle myosin II. Phosphorylation leads to the activation of the myosin motor domain and altered structural properties of myosin II. In smooth muscle MLCK it is involved in initiating contraction. In nonmuscle cells, MLCK may participate in cell division and cell motility; it has
Probab=97.69 E-value=5.3e-05 Score=48.08 Aligned_cols=38 Identities=26% Similarity=0.239 Sum_probs=32.2
Q ss_pred CCCcceEEeecCCeEEEeeecCCCCCCCCceEEEeeeccccc
Q psy531 37 ISNAVHITALLGESVVFNCGVDFPGDTPVPYVLQWEKKIVKN 78 (80)
Q Consensus 37 ~~~P~~ltA~vGe~VVlnCdvdfP~~~PiPYVvqW~KdG~~~ 78 (80)
.+.|+.+++++|+.|.|.|.+. |.|.|- ++|.|+|.+-
T Consensus 4 ~~~p~~~~v~~G~~v~l~C~~~---G~p~p~-v~W~kdg~~l 41 (98)
T cd05762 4 IQFPEDMKVRAGESVELFCKVT---GTQPIT-CTWMKFRKQI 41 (98)
T ss_pred EECCcCEEEECCCEEEEEEEEc---ccCCCc-eEEEECCEEe
Confidence 3578889999999999999996 777776 8999998753
No 3
>cd05724 Ig2_Robo Second immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Ig2_Robo: domain similar to the second immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antago
Probab=97.59 E-value=0.00015 Score=42.81 Aligned_cols=37 Identities=22% Similarity=0.452 Sum_probs=29.0
Q ss_pred CCcceEEeecCCeEEEeeecCCCCCCCCceEEEeeecccc
Q psy531 38 SNAVHITALLGESVVFNCGVDFPGDTPVPYVLQWEKKIVK 77 (80)
Q Consensus 38 ~~P~~ltA~vGe~VVlnCdvdfP~~~PiPYVvqW~KdG~~ 77 (80)
++|..+++..|+.|.|.|.+. .+.|.| -++|.|+|.+
T Consensus 1 ~~p~~~~~~~G~~v~l~C~~~--~g~p~p-~i~W~k~g~~ 37 (86)
T cd05724 1 VEPSDTQVAVGEMAVLECSPP--RGHPEP-TVSWRKDGQP 37 (86)
T ss_pred CCCccEEEeCCCCEEEEEECC--CCCCCC-EEEEEECCEE
Confidence 468899999999999999763 345544 5789999865
No 4
>cd04973 Ig1_FGFR First immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Ig1_FGFR: The first immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for all FGFs.
Probab=97.49 E-value=0.00015 Score=43.78 Aligned_cols=33 Identities=21% Similarity=0.380 Sum_probs=27.6
Q ss_pred cceEEeecCCeEEEeeecCCCCCCCCceEEEeeecccc
Q psy531 40 AVHITALLGESVVFNCGVDFPGDTPVPYVLQWEKKIVK 77 (80)
Q Consensus 40 P~~ltA~vGe~VVlnCdvdfP~~~PiPYVvqW~KdG~~ 77 (80)
|+.++++.|+.|.|.|.+.-+ .| -++|.|+|.+
T Consensus 1 ~~~~~~~~G~~v~l~C~~~~~----~~-~v~W~k~g~~ 33 (79)
T cd04973 1 VESYSAHPGDLLQLRCRLRDD----VQ-SINWTKDGVQ 33 (79)
T ss_pred CCcEEecCCCCEEEEEEecCC----Cc-eEEEeeCCcC
Confidence 678889999999999998754 23 4999999975
No 5
>cd05730 Ig3_NCAM-1_like Third immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). Ig3_NCAM-1_like: domain similar to the third immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-non-NCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1,and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the
Probab=97.44 E-value=0.0002 Score=43.76 Aligned_cols=37 Identities=35% Similarity=0.571 Sum_probs=30.9
Q ss_pred CCCcceEEeecCCeEEEeeecCCCCCCCCceEEEeeecccc
Q psy531 37 ISNAVHITALLGESVVFNCGVDFPGDTPVPYVLQWEKKIVK 77 (80)
Q Consensus 37 ~~~P~~ltA~vGe~VVlnCdvdfP~~~PiPYVvqW~KdG~~ 77 (80)
++.+...++..|+.|.|.|.++ |.|.|- +.|.|+|..
T Consensus 7 ~~~~~~~~~~~G~~v~L~C~~~---g~P~p~-v~W~k~g~~ 43 (95)
T cd05730 7 RQSEVNATANLGQSVTLACDAD---GFPEPT-MTWTKDGEP 43 (95)
T ss_pred CCcccceEEeCCCCEEEEEecc---EeCCCE-EEEEECCEE
Confidence 4567788999999999999985 777776 799999864
No 6
>cd05749 Ig2_Tyro3_like Second immunoglobulin (Ig)-like domain of Axl/Tyro3 receptor tyrosine kinases (RTKs). Ig2_Tyro3_like: the second immunoglobulin (Ig)-like domain in the Axl/Tyro3 family of receptor tyrosine kinases (RTKs). This family includes Axl (also known as Ark, Ufo, and Tyro7), Tyro3 (also known as Sky, Rse, Brt, Dtk, and Tif), and Mer (also known as Nyk, c-Eyk, and Tyro12). Axl/Tyro3 family receptors have an extracellular portion with two Ig-like domains followed by two fibronectin-types III (FNIII) domains, a membrane-spanning single helix, and a cytoplasmic tyrosine kinase domain. Axl, Tyro3 and Mer are widely expressed in adult tissues, though they show higher expression in the brain, in the lymphatic and vascular systems, and in the testis. Axl, Tyro3, and Mer bind the vitamin K dependent protein Gas6 with high affinity, and in doing so activate their tyrosine kinase activity. Axl/Gas6 signaling may play a part in cell adhesion processes, prevention of apoptosis, and c
Probab=97.40 E-value=0.00026 Score=44.21 Aligned_cols=38 Identities=11% Similarity=0.194 Sum_probs=33.7
Q ss_pred CCcceEEeecCCeEEEeeecCCCCCCCCceEEEeeeccccc
Q psy531 38 SNAVHITALLGESVVFNCGVDFPGDTPVPYVLQWEKKIVKN 78 (80)
Q Consensus 38 ~~P~~ltA~vGe~VVlnCdvdfP~~~PiPYVvqW~KdG~~~ 78 (80)
++|..++++.|+.|.|.|.. .|.|.|.-+.|.|+|.+-
T Consensus 3 ~~P~~~~v~~G~~v~l~C~a---~G~P~P~~I~W~k~g~~l 40 (81)
T cd05749 3 VEPEDLSVTANTPFNLTCQA---VGPPEPVEILWWQGGSPL 40 (81)
T ss_pred CCCCceEEcCCCCEEEEEEe---eeecCCeEEEEEECCEEC
Confidence 57888999999999999986 699999889999999764
No 7
>cd05712 Ig_Siglec_N Immunoglobulin (Ig) domain at the N terminus of Siglec (sialic acid-binding Ig-like lectins). Ig_Siglec_N: immunoglobulin (Ig) domain at the N terminus of Siglec (sialic acid-binding Ig-like lectins). Siglec refers to a structurally related protein family that specifically recognizes sialic acid in oligosaccharide chains of glycoproteins and glycolipids. Siglecs are type I transmembrane proteins, organized as an extracellular module composed of Ig-like domains (an N-terminal variable set of Ig-like carbohydrate recognition domains, and 1 to 16 constant Ig-like domains), followed by transmembrane and short cytoplasmic domains. Human siglecs are classified into two subgroups, one subgroup is comprised of sialoadhesin (Siglec-1), CD22 (Siglec-2), and MAG, the other subgroup is comprised of CD33-related Siglecs which include CD33 (Siglec-3) and human Siglecs 5-11.
Probab=97.35 E-value=0.00039 Score=45.09 Aligned_cols=38 Identities=18% Similarity=0.277 Sum_probs=31.0
Q ss_pred CCcceEEeecCCeEEEeeecCCCCC--CCCceEEEeeecc
Q psy531 38 SNAVHITALLGESVVFNCGVDFPGD--TPVPYVLQWEKKI 75 (80)
Q Consensus 38 ~~P~~ltA~vGe~VVlnCdvdfP~~--~PiPYVvqW~KdG 75 (80)
+.|+.+.|..|+.|+|+|.+++|.+ .+-...+.|.|+.
T Consensus 4 q~P~~v~~~~G~~VtL~C~f~~~~~~~~~~~~~~~Wykq~ 43 (119)
T cd05712 4 WMPKSVSVQEGLCVLIPCSFSYPADWPVSNGVHGIWYKGH 43 (119)
T ss_pred cCCCEEEEeccccEEEEEEeeCcccccCCCceEEEEEeCC
Confidence 5689999999999999999999953 2234668999984
No 8
>cd05728 Ig4_Contactin-2-like Fourth Ig domain of the neural cell adhesion molecule contactin-2 and similar proteins. Ig4_Contactin-2-like: fourth Ig domain of the neural cell adhesion molecule contactin-2. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (aliases TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. The first four Ig domains form the intermolecular binding fragment which arranges as a compact U-shaped module by contacts between Ig domains 1 and 4, and domains 2 and 3. It has been proposed that a linear zipper-like array forms, from contactin-2 molecules alternatively provided by the two apposed membranes.
Probab=97.31 E-value=0.00028 Score=42.94 Aligned_cols=37 Identities=22% Similarity=0.384 Sum_probs=31.6
Q ss_pred CCcceEEeecCCeEEEeeecCCCCCCCCceEEEeeeccccc
Q psy531 38 SNAVHITALLGESVVFNCGVDFPGDTPVPYVLQWEKKIVKN 78 (80)
Q Consensus 38 ~~P~~ltA~vGe~VVlnCdvdfP~~~PiPYVvqW~KdG~~~ 78 (80)
+.|...++..|+.|.|.|.+. |.|.| .+.|.|+|.+.
T Consensus 4 ~~p~~~~~~~G~~~~l~C~~~---g~p~p-~v~W~k~g~~~ 40 (85)
T cd05728 4 KVISDTEADIGSSLRWECKAS---GNPRP-AYRWLKNGQPL 40 (85)
T ss_pred ccCCccEEcCCCcEEEEEEee---EeCCC-EEEEEECCEEC
Confidence 468889999999999999876 77777 69999998753
No 9
>cd05722 Ig1_Neogenin First immunoglobulin (Ig)-like domain in neogenin and similar proteins. Ig1_Neogenin: first immunoglobulin (Ig)-like domain in neogenin and related proteins. Neogenin is a cell surface protein which is expressed in the developing nervous system of vertebrate embryos in the growing nerve cells. It is also expressed in other embryonic tissues, and may play a general role in developmental processes such as cell migration, cell-cell recognition, and tissue growth regulation. Included in this group is the tumor suppressor protein DCC, which is deleted in colorectal carcinoma . DCC and neogenin each have four Ig-like domains followed by six fibronectin type III domains, a transmembrane domain, and an intracellular domain.
Probab=97.27 E-value=0.0004 Score=42.65 Aligned_cols=36 Identities=36% Similarity=0.689 Sum_probs=28.9
Q ss_pred CCcceEEeecCCeEEEeeecCCCCCCCCceEEEeeecccc
Q psy531 38 SNAVHITALLGESVVFNCGVDFPGDTPVPYVLQWEKKIVK 77 (80)
Q Consensus 38 ~~P~~ltA~vGe~VVlnCdvdfP~~~PiPYVvqW~KdG~~ 77 (80)
.+|+..+...|+.|.|.|.+. +.|.| .++|.|+|..
T Consensus 4 ~~P~~~~~~~g~~v~l~C~v~---g~P~p-~i~W~k~g~~ 39 (95)
T cd05722 4 SEPSDIVAVRGGPVVLNCSAE---GEPPP-KIEWKKDGVL 39 (95)
T ss_pred ECCCCeEEcCCCCEEEeeecc---cCCCC-EEEEEECCeE
Confidence 467888889999999999986 45544 4699999874
No 10
>cd05747 Ig5_Titin_like M5, fifth immunoglobulin (Ig)-like domain of human titin C terminus and similar proteins. Ig5_Titin_like: domain similar to the M5, fifth immunoglobulin (Ig)-like domain from the human titin C terminus. Titin (also called connectin) is a fibrous sarcomeric protein specifically found in vertebrate striated muscle. Titin is gigantic; depending on isoform composition it ranges from 2970 to 3700 kDa, and is of a length that spans half a sarcomere. Titin largely consists of multiple repeats of Ig-like and fibronectin type 3 (FN-III)-like domains. Titin connects the ends of myosin thick filaments to Z disks and extends along the thick filament to the H zone, and appears to function similar to an elastic band, keeping the myosin filaments centered in the sarcomere during muscle contraction or stretching.
Probab=97.23 E-value=0.00049 Score=42.17 Aligned_cols=37 Identities=30% Similarity=0.586 Sum_probs=31.3
Q ss_pred CCCcceEEeecCCeEEEeeecCCCCCCCCceEEEeeecccc
Q psy531 37 ISNAVHITALLGESVVFNCGVDFPGDTPVPYVLQWEKKIVK 77 (80)
Q Consensus 37 ~~~P~~ltA~vGe~VVlnCdvdfP~~~PiPYVvqW~KdG~~ 77 (80)
.++|..++++.|+.+.|.|.+. +.|.|- +.|.|+|..
T Consensus 7 ~~~p~~~~~~~G~~~~L~C~~~---g~P~p~-v~W~k~g~~ 43 (92)
T cd05747 7 LTKPRSLTVSEGESARFSCDVD---GEPAPT-VTWMREGQI 43 (92)
T ss_pred cccCccEEEeCCCcEEEEEEEe---ecCCCE-EEEEECCEE
Confidence 4578889999999999999775 777775 999999865
No 11
>cd05873 Ig_Sema4D_like Immunoglobulin (Ig)-like domain of the class IV semaphorin Sema4D. Ig_Sema4D_like; Immunoglobulin (Ig)-like domain of Sema4D. Sema4D is a Class IV semaphorin. Semaphorins are classified based on structural features additional to the Sema domain. Sema4D has extracellular Sema and Ig domains, a transmembrane domain, and a short cytoplasmic domain. Sema4D plays a part in the development of GABAergic synapses. Sema4D in addition is an immune semaphorin. It is abundant on resting T cells; its expression is weak on resting B cells and antigen presenting cells (APCs), but is upregulated by various stimuli. The receptor used by Sema4D in the immune system is CD72. Sem4D enhances the activation of B cells and DCs through binding CD72, perhaps by reducing CD72s inhibitory signals. The receptor used by Sema4D in the non-lymphatic tissues is plexin-B1. Sem4D is anchored to the cell surface but its extracellular domain can be released from the cell surface by a metalloproteas
Probab=97.23 E-value=0.00055 Score=44.00 Aligned_cols=35 Identities=14% Similarity=0.201 Sum_probs=28.6
Q ss_pred CCcceEEeecCCeEEEeeecCCCCCCCCceEEEeeecccc
Q psy531 38 SNAVHITALLGESVVFNCGVDFPGDTPVPYVLQWEKKIVK 77 (80)
Q Consensus 38 ~~P~~ltA~vGe~VVlnCdvdfP~~~PiPYVvqW~KdG~~ 77 (80)
.+|+..+.+.|+.|+|.|..+- |.|. +.|.|+|.+
T Consensus 1 ~~P~~~~v~~G~~v~L~C~~~~----~~~~-i~W~~ng~~ 35 (87)
T cd05873 1 LDPRQRTFKLGNNAELKCSPKS----NLAR-VVWKFDGKV 35 (87)
T ss_pred CCcceEEEECCCCEEEEEECCC----CCCe-EEEEECCEE
Confidence 3789999999999999999643 3343 799999875
No 12
>cd05891 Ig_M-protein_C C-terminal immunoglobulin (Ig)-like domain of M-protein (also known as myomesin-2). Ig_M-protein_C: the C-terminal immunoglobulin (Ig)-like domain of M-protein (also known as myomesin-2). M-protein is a structural protein localized to the M-band, a transverse structure in the center of the sarcomere, and is a candidate for M-band bridges. M-protein is modular consisting mainly of repetitive IG-like and fibronectin type III (FnIII) domains, and has a muscle-type specific expression pattern. M-protein is present in fast fibers.
Probab=97.19 E-value=0.00056 Score=42.54 Aligned_cols=36 Identities=22% Similarity=0.352 Sum_probs=30.4
Q ss_pred CCcceEEeecCCeEEEeeecCCCCCCCCceEEEeeecccc
Q psy531 38 SNAVHITALLGESVVFNCGVDFPGDTPVPYVLQWEKKIVK 77 (80)
Q Consensus 38 ~~P~~ltA~vGe~VVlnCdvdfP~~~PiPYVvqW~KdG~~ 77 (80)
.-|..+++..|+.|.|.|.+. +.|.|+ +.|.|+|.+
T Consensus 6 ~~p~~v~v~eG~~v~L~C~v~---g~P~p~-i~W~k~~~~ 41 (92)
T cd05891 6 GLPDVVTIMEGKTLNLTCTVF---GNPDPE-VIWFKNDQD 41 (92)
T ss_pred cCCCcEEEcCCCEEEEEEEEE---EeCCCe-EEEEECCEE
Confidence 457899999999999999985 567777 799999864
No 13
>cd05737 Ig_Myomesin_like_C C-temrinal immunoglobulin (Ig)-like domain of myomesin and M-protein. Ig_Myomesin_like_C: domain similar to the C-temrinal immunoglobulin (Ig)-like domain of myomesin and M-protein. Myomesin and M-protein are both structural proteins localized to the M-band, a transverse structure in the center of the sarcomere, and are candidates for M-band bridges. Both proteins are modular, consisting mainly of repetitive Ig-like and fibronectin type III (FnIII) domains. Myomesin is expressed in all types of vertebrate striated muscle; M-protein has a muscle-type specific expression pattern. Myomesin is present in both slow and fast fibers; M-protein is present only in fast fibers. It has been suggested that myomesin acts as a molecular spring with alternative splicing as a means of modifying its elasticity.
Probab=97.14 E-value=0.00064 Score=41.78 Aligned_cols=35 Identities=23% Similarity=0.376 Sum_probs=29.3
Q ss_pred CcceEEeecCCeEEEeeecCCCCCCCCceEEEeeecccc
Q psy531 39 NAVHITALLGESVVFNCGVDFPGDTPVPYVLQWEKKIVK 77 (80)
Q Consensus 39 ~P~~ltA~vGe~VVlnCdvdfP~~~PiPYVvqW~KdG~~ 77 (80)
=|..++++.|+.+.|.|.+. |.|.|- +.|.|+|.+
T Consensus 7 lp~~v~v~~G~~v~L~C~v~---G~P~p~-v~W~k~g~~ 41 (92)
T cd05737 7 LPDVVTIMEGKTLNLTCTVF---GDPDPE-VSWLKNDQA 41 (92)
T ss_pred CCceEEEeCCCcEEEEEEEE---ecCCCe-EEEEECCEE
Confidence 46788999999999999875 777775 789999865
No 14
>cd04972 Ig_TrkABC_d4 Fourth domain (immunoglobulin-like) of Trk receptors TrkA, TrkB and TrkC. TrkABC_d4: the fourth domain of Trk receptors TrkA, TrkB and TrkC, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors. They are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkA, TrkB, and TrkC share significant sequence homology and domain organization. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrkA, Band C mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. TrkA is recognized by NGF. TrKB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. TrkC is recognized by NT-3. NT-3 is promiscuous as in some cell systems it activates TrkA and TrkB receptors. TrkA is a receptor fo
Probab=97.08 E-value=0.00073 Score=41.24 Aligned_cols=36 Identities=14% Similarity=0.385 Sum_probs=30.0
Q ss_pred CCcceEEeecCCeEEEeeecCCCCCCCCceEEEeeecccc
Q psy531 38 SNAVHITALLGESVVFNCGVDFPGDTPVPYVLQWEKKIVK 77 (80)
Q Consensus 38 ~~P~~ltA~vGe~VVlnCdvdfP~~~PiPYVvqW~KdG~~ 77 (80)
+.|+..++..|+.|.|.|.+. |.|.| -+.|.|+|..
T Consensus 5 ~~p~~~~v~~G~~v~l~C~~~---G~P~p-~v~W~~~g~~ 40 (90)
T cd04972 5 DGPNATVVYEGGTATIRCTAE---GSPLP-KVEWIIAGLI 40 (90)
T ss_pred cCCcCEEEcCCCcEEEEEEEE---EcCCC-eEEEEECCEE
Confidence 346677799999999999998 77776 6899999864
No 15
>cd04975 Ig4_SCFR_like Fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR) and similar proteins. Ig4_SCFR_like; fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR). In addition to SCFR this group also includes the fourth Ig domain of platelet-derived growth factor receptors (PDGFR), alpha and beta, the fourth Ig domain of macrophage colony stimulating factor (M-CSF), and the Ig domain of the receptor tyrosine kinase KIT. SCFR and the PDGFR alpha and beta have similar organization: an extracellular component having five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. SCFR and its ligand SCF are critical for normal hematopoiesis, mast cell development, melanocytes and gametogenesis. SCF binds to the second and third Ig-like domains of SCFR, this fourth Ig-like domain participates in SCFR dimerization, which follows ligand binding. Deletion of this fourth SCFR_Ig-like domain abolishes
Probab=97.05 E-value=0.00073 Score=43.73 Aligned_cols=35 Identities=26% Similarity=0.412 Sum_probs=27.8
Q ss_pred cceEEeecCCeEEEeeecCC-CCCCCCceEEEeeeccccc
Q psy531 40 AVHITALLGESVVFNCGVDF-PGDTPVPYVLQWEKKIVKN 78 (80)
Q Consensus 40 P~~ltA~vGe~VVlnCdvdf-P~~~PiPYVvqW~KdG~~~ 78 (80)
=..+++.+|++|.|.|.++= | |+| .+.|.|||.+-
T Consensus 10 ~~~~~v~~G~~v~L~c~v~g~~---P~p-~v~W~Kdg~~i 45 (101)
T cd04975 10 NTTIFVNLGENLNLVVEVEAYP---PPP-HINWTYDNRTL 45 (101)
T ss_pred CceEEEECCCCEEEEEEEEecC---CCC-ccEEEeCCeeC
Confidence 35788999999999999982 3 444 58999999753
No 16
>cd04979 Ig_Semaphorin_C Immunoglobulin (Ig)-like domain of semaphorin. Ig_Semaphorin_C; Immunoglobulin (Ig)-like domain in semaphorins. Semaphorins are transmembrane protein that have important roles in a variety of tissues. Functionally, semaphorins were initially characterized for their importance in the development of the nervous system and in axonal guidance. Later they have been found to be important for the formation and functioning of the cardiovascular, endocrine, gastrointestinal, hepatic, immune, musculoskeletal, renal, reproductive, and respiratory systems. Semaphorins function through binding to their receptors and transmembrane semaphorins also serves as receptors themselves. Although molecular mechanism of semaphorins is poorly understood, the Ig-like domains may involve in ligand binding or dimerization.
Probab=97.02 E-value=0.0014 Score=39.76 Aligned_cols=35 Identities=17% Similarity=0.274 Sum_probs=27.9
Q ss_pred CCcceEEeecCCeEEEeeecCCCCCCCCceEEEeeecccc
Q psy531 38 SNAVHITALLGESVVFNCGVDFPGDTPVPYVLQWEKKIVK 77 (80)
Q Consensus 38 ~~P~~ltA~vGe~VVlnCdvdfP~~~PiPYVvqW~KdG~~ 77 (80)
++|..+++..|+.|.|.|.+.- |.| -++|.|+|..
T Consensus 1 ~~~~~~~v~~g~~v~L~C~~~~----p~~-~i~W~k~~~~ 35 (89)
T cd04979 1 AEEKVVTVVEGNSVFLECSPKS----NLA-SVVWLFQGGP 35 (89)
T ss_pred CcceEEEEECCCcEEEEEeCCC----CCc-eEEEEECCcc
Confidence 3678889999999999999764 334 3899999854
No 17
>cd05851 Ig3_Contactin-1 Third Ig domain of contactin-1. Ig3_Contactin-1: Third Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma.
Probab=96.97 E-value=0.0014 Score=40.40 Aligned_cols=36 Identities=28% Similarity=0.504 Sum_probs=30.4
Q ss_pred CCcceEEeecCCeEEEeeecCCCCCCCCceEEEeeecccc
Q psy531 38 SNAVHITALLGESVVFNCGVDFPGDTPVPYVLQWEKKIVK 77 (80)
Q Consensus 38 ~~P~~ltA~vGe~VVlnCdvdfP~~~PiPYVvqW~KdG~~ 77 (80)
.+|...++..|+.|.|.|.++ |.|.|. +.|.|+|.+
T Consensus 6 ~~~~~~~~~~G~~v~l~C~~~---G~P~P~-v~W~k~~~~ 41 (88)
T cd05851 6 VKFKDTYALKGQNVTLECFAL---GNPVPV-IRWRKILEP 41 (88)
T ss_pred EccccEEEeCCCcEEEEEEec---ccCCCE-EEEEECCcC
Confidence 456778899999999999976 888885 999998764
No 18
>PF07679 I-set: Immunoglobulin I-set domain; InterPro: IPR013098 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds. There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents I-set domains, which are found in several cell adhesion molecules, including vascular (VCAM), intercellular (ICAM), neural (NCAM) and mucosal addressin (MADCAM) cell adhesion molecules, as well as junction adhesion molecules (JAM). I-set domains are also present in several other diverse protein families, including several tyrosine-protein kinase receptors, the hemolymph protein hemolin, the muscle proteins titin, telokin, and twitchin, the neuronal adhesion molecule axonin-1 [], and the signalling molecule semaphorin 4D that is involved in axonal guidance, immune function and angiogenesis [].; PDB: 3MTR_A 2EDK_A 3DMK_B 1KOA_A 3NCM_A 2NCM_A 2V9Q_A 2CR3_A 3QQN_A 3QR2_A ....
Probab=96.95 E-value=0.0011 Score=39.17 Aligned_cols=36 Identities=31% Similarity=0.478 Sum_probs=29.2
Q ss_pred CCcceEEeecCCeEEEeeecCCCCCCCCceEEEeeecccc
Q psy531 38 SNAVHITALLGESVVFNCGVDFPGDTPVPYVLQWEKKIVK 77 (80)
Q Consensus 38 ~~P~~ltA~vGe~VVlnCdvdfP~~~PiPYVvqW~KdG~~ 77 (80)
+.|..++++.|+.+.|.|.+.-. |.| .++|.|+|.+
T Consensus 5 ~~~~~~~v~~G~~~~l~c~~~~~---p~~-~v~W~~~~~~ 40 (90)
T PF07679_consen 5 KKPKDVTVKEGESVTLECEVSGN---PPP-TVTWYKNGRP 40 (90)
T ss_dssp EESSEEEEETTSEEEEEEEEEES---SSS-EEEEEETTEE
T ss_pred EecCCEEEeCCCEEEEEEEEEeC---CCC-cccccccccc
Confidence 35788999999999999999733 444 7899999865
No 19
>cd04982 IgV_TCR_gamma Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) gamma chain. IgV_TCR_gamma: immunoglobulin (Ig) variable (V) domain of the gamma chain of gamma/delta T-cell receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are heterodimers consisting of alpha and beta chains or gamma and delta chains. Each chain contains a variable (V) and a constant (C) region. The majority of T cells contain alpha/beta TCRs but a small subset contain gamma/delta TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. Gamma/delta TCRs recognize intact protein antigens; they recognize protein antigens directly and without antigen processing, and MHC independently of the bound peptide. Gamma/delta T cells can also be stimulated by non-peptide antigens such as small phosphate- or amine-containing compounds. The variable domain of gamma/delta TCRs is responsible for antigen recognition and is
Probab=96.93 E-value=0.0017 Score=41.04 Aligned_cols=37 Identities=19% Similarity=0.216 Sum_probs=30.0
Q ss_pred CCCcceEEeecCCeEEEeeecCCCCCCCCceEEEeeecc
Q psy531 37 ISNAVHITALLGESVVFNCGVDFPGDTPVPYVLQWEKKI 75 (80)
Q Consensus 37 ~~~P~~ltA~vGe~VVlnCdvdfP~~~PiPYVvqW~KdG 75 (80)
.|.|..+++..|+.|-|+|.+.-+ .-.++.+.|.|+.
T Consensus 2 ~Q~p~~~~~~~G~~v~l~C~~~~~--~~~~~~v~Wyrq~ 38 (116)
T cd04982 2 EQPQLSITREESKSVTISCKVSGI--DFSTTYIHWYRQK 38 (116)
T ss_pred CCcCCeEEeCCCCCEEEEEEEeCC--CccccEEEEEEEC
Confidence 578999999999999999998664 1235679999973
No 20
>cd05752 Ig1_FcgammaR_like Frst immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs) and similar proteins. Ig1_FcgammaR_like: domain similar to the first immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs). Interactions between IgG and FcgammaR are important to the initiation of cellular and humoral response. IgG binding to FcgammaR leads to a cascade of signals and ultimately to functions such as antibody-dependent-cellular-cytotoxicity (ADCC), endocytosis, phagocytosis, release of inflammatory mediators, etc. FcgammaR has two Ig-like domains. This group also contains FcepsilonRI, which binds IgE with high affinity.
Probab=96.92 E-value=0.0015 Score=40.24 Aligned_cols=37 Identities=22% Similarity=0.236 Sum_probs=29.7
Q ss_pred CCcceEEeecCCeEEEeeecCCCCCCCCceEEEeeecccc
Q psy531 38 SNAVHITALLGESVVFNCGVDFPGDTPVPYVLQWEKKIVK 77 (80)
Q Consensus 38 ~~P~~ltA~vGe~VVlnCdvdfP~~~PiPYVvqW~KdG~~ 77 (80)
..|+..+...|+.|.|.|..+-. |.|--++|.|+|..
T Consensus 5 ~~P~~~~v~~G~~V~L~C~~~~~---p~~~~~~W~kng~~ 41 (78)
T cd05752 5 LDPPWTTIFQGEKVTLTCNGFNS---PEQNSTQWYHNGKL 41 (78)
T ss_pred eCCCCeEeeCCCCEEEEEeCCCC---CCCccEEEEECCEE
Confidence 35888889999999999998753 44444799999975
No 21
>cd04968 Ig3_Contactin_like Third Ig domain of contactin. Ig3_Contactin_like: Third Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week
Probab=96.88 E-value=0.0013 Score=39.67 Aligned_cols=36 Identities=28% Similarity=0.422 Sum_probs=29.1
Q ss_pred CCcceEEeecCCeEEEeeecCCCCCCCCceEEEeeecccc
Q psy531 38 SNAVHITALLGESVVFNCGVDFPGDTPVPYVLQWEKKIVK 77 (80)
Q Consensus 38 ~~P~~ltA~vGe~VVlnCdvdfP~~~PiPYVvqW~KdG~~ 77 (80)
..|+..++..|+.|.|.|.++ |.|.|- ++|.|++..
T Consensus 6 ~~p~~~~~~~g~~v~l~C~~~---g~P~p~-v~W~k~~~~ 41 (88)
T cd04968 6 VFPKDTYALKGQNVTLECFAL---GNPVPQ-IKWRKVDGS 41 (88)
T ss_pred ECCCceEEeCCCcEEEEEEee---EeCCCE-EEEEECCCc
Confidence 457888899999999999764 667664 899998753
No 22
>cd05859 Ig4_PDGFR-alpha Fourth immunoglobulin (Ig)-like domain of platelet-derived growth factor receptor (PDGFR) alpha. IG4_PDGFR-alpha: The fourth immunoglobulin (Ig)-like domain of platelet-derived growth factor receptor (PDGFR) alpha. PDGF is a potent mitogen for connective tissue cells. PDGF-stimulated processes are mediated by three different PDGFs (PDGF-A,-B, and C). PDGFR alpha binds to all three PDGFs, whereas the PDGFR beta (not included in this group) binds only to PDGF-B. PDGF alpha is organized as an extracellular component having five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. In mice, PDGFR alpha and PDGFR beta are essential for normal development.
Probab=96.88 E-value=0.00097 Score=42.92 Aligned_cols=32 Identities=28% Similarity=0.300 Sum_probs=28.9
Q ss_pred eEEeecCCeEEEeeecCCCCCCCCceEEEeeecccc
Q psy531 42 HITALLGESVVFNCGVDFPGDTPVPYVLQWEKKIVK 77 (80)
Q Consensus 42 ~ltA~vGe~VVlnCdvdfP~~~PiPYVvqW~KdG~~ 77 (80)
..++.+|+.+.|.|.++ +.|.| .++|.|+|.+
T Consensus 12 ~~~~~~~~~~~l~~~v~---g~P~P-~v~W~kdg~~ 43 (101)
T cd05859 12 LEFANLHEVKEFVVEVE---AYPPP-QIRWLKDNRT 43 (101)
T ss_pred eEEEecCCcEEEEEEEE---EeCCC-ceEEEECCEE
Confidence 67899999999999997 77888 7999999986
No 23
>cd04983 IgV_TCR_alpha_like Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) alpha chain and similar proteins. IgV_TCR_alpha: immunoglobulin (Ig) variable domain of the alpha chain of alpha/beta T-cell antigen receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are composed of alpha and beta, or gamma and delta, polypeptide chains with variable (V) and constant (C) regions. This group represents the variable domain of the alpha chain of TCRs and also includes the variable domain of delta chains of TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. The variable domain of TCRs is responsible for antigen recognition, and is located at the N-terminus of the receptor. Gamma/delta TCRs recognize intact protein antigens; they recognize proteins antigens directly and without antigen processing, and MHC independently of the bound peptide.
Probab=96.88 E-value=0.0016 Score=40.16 Aligned_cols=35 Identities=23% Similarity=0.460 Sum_probs=28.5
Q ss_pred CCCcceEEeecCCeEEEeeecCCCCCCCCceEEEeeecc
Q psy531 37 ISNAVHITALLGESVVFNCGVDFPGDTPVPYVLQWEKKI 75 (80)
Q Consensus 37 ~~~P~~ltA~vGe~VVlnCdvdfP~~~PiPYVvqW~KdG 75 (80)
.+.|..+++..|+.|.|+|.+... .+..+.|.|+.
T Consensus 2 ~q~~~~v~~~~G~~v~L~C~~~~~----~~~~v~W~k~~ 36 (109)
T cd04983 2 TQSPQSLSVQEGENVTLNCNYSTS----TFYYLFWYRQY 36 (109)
T ss_pred eecCCceEEcCCCCEEEEEEECCC----CccEEEEEEEC
Confidence 467889999999999999998854 23467899975
No 24
>cd05894 Ig_C5_MyBP-C C5 immunoglobulin (Ig) domain of cardiac myosin binding protein C (MyBP-C). Ig_C5_MyBP_C : the C5 immunoglobulin (Ig) domain of cardiac myosin binding protein C (MyBP-C). MyBP_C consists of repeated domains, Ig and fibronectin type 3, and various linkers. Three isoforms of MYBP_C exist and are included in this group: cardiac(c), and fast and slow skeletal muscle (s) MyBP_C. cMYBP_C has insertions between and inside domains and an additional cardiac-specific Ig domain at the N-terminus. For cMYBP_C an interaction has been demonstrated between this C5 domain and the Ig C8 domain.
Probab=96.88 E-value=0.0016 Score=40.26 Aligned_cols=33 Identities=15% Similarity=0.426 Sum_probs=27.4
Q ss_pred eEEeecCCeEEEeeecCCCCCCCCceEEEeeeccccc
Q psy531 42 HITALLGESVVFNCGVDFPGDTPVPYVLQWEKKIVKN 78 (80)
Q Consensus 42 ~ltA~vGe~VVlnCdvdfP~~~PiPYVvqW~KdG~~~ 78 (80)
-+++++|+.|.|.|.+. |.|.| .+.|.|+|.+-
T Consensus 4 ~~~v~~G~~v~l~c~~~---G~P~P-~v~W~k~~~~i 36 (86)
T cd05894 4 TIVVVAGNKLRLDVPIS---GEPAP-TVTWSRGDKAF 36 (86)
T ss_pred EEEEEcCCEEEEEeeEe---ecCCC-eEEEEECCEEC
Confidence 36789999999999885 77777 68999998754
No 25
>cd05856 Ig2_FGFRL1-like Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor_like-1(FGFRL1). Ig2_FGFRL1-like: second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor_like-1(FGFRL1). FGFRL1 is comprised of a signal peptide, three extracellular Ig-like modules, a transmembrane segment, and a short intracellular domain. FGFRL1 is expressed preferentially in skeletal tissues. Similar to FGF receptors, the expressed protein interacts specifically with heparin and with FGF2. FGFRL1 does not have a protein tyrosine kinase domain at its C terminus; neither does its cytoplasmic domain appear to interact with a signaling partner. It has been suggested that FGFRL1 may not have any direct signaling function, but instead acts as a decoy receptor trapping FGFs and preventing them from binding other receptors.
Probab=96.85 E-value=0.0014 Score=37.91 Aligned_cols=32 Identities=28% Similarity=0.494 Sum_probs=25.2
Q ss_pred eEEeecCCeEEEeeecCCCCCCCCceEEEeeecccc
Q psy531 42 HITALLGESVVFNCGVDFPGDTPVPYVLQWEKKIVK 77 (80)
Q Consensus 42 ~ltA~vGe~VVlnCdvdfP~~~PiPYVvqW~KdG~~ 77 (80)
++++.+|+.|.|.|.+. +.|.|. +.|.|+|..
T Consensus 3 ~~~~~~G~~v~L~C~~~---g~p~p~-i~W~k~~~~ 34 (82)
T cd05856 3 VIARPVGSSVRLKCVAS---GNPRPD-ITWLKDNKP 34 (82)
T ss_pred ceeccCCCeEEEEEEee---EeCCCc-EEEEECCcC
Confidence 46688999999999875 455554 899999865
No 26
>cd05870 Ig5_NCAM-2 Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-2 (also known as OCAM/mamFas II and RNCAM). Ig5_NCAM-2: the fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-2 (also known as OCAM/mamFas II and RNCAM). NCAM-2 is organized similarly to NCAM , including five N-terminal Ig-like domains and two fibronectin type III domains. NCAM-2 is differentially expressed in the developing and mature olfactory epithelium (OE), and may function like NCAM, as an adhesion molecule.
Probab=96.76 E-value=0.0021 Score=39.89 Aligned_cols=32 Identities=16% Similarity=0.536 Sum_probs=26.9
Q ss_pred CcceEEeecCCeEEEeeecCCCCCCCCceEEEeeec
Q psy531 39 NAVHITALLGESVVFNCGVDFPGDTPVPYVLQWEKK 74 (80)
Q Consensus 39 ~P~~ltA~vGe~VVlnCdvdfP~~~PiPYVvqW~Kd 74 (80)
+|...++..|+.|.|.|.+. |.|.|. ++|.|+
T Consensus 7 ~~~~~~~~~G~~v~l~C~~~---G~P~p~-i~W~k~ 38 (98)
T cd05870 7 QLKNETTVENGAATLSCKAE---GEPIPE-ITWKRA 38 (98)
T ss_pred eeccEEEcCCCcEEEEEecc---cCCCCe-EEEEEC
Confidence 46678899999999999875 777775 999995
No 27
>cd05758 Ig5_KIRREL3-like Fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2) and similar proteins. Ig5_KIRREL3-like: domain similar to the fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1), Kirrel2 (Neph3), and Drosophila RST (irregular chiasm C-roughest) protein. These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development.
Probab=96.71 E-value=0.0029 Score=39.24 Aligned_cols=35 Identities=26% Similarity=0.365 Sum_probs=29.3
Q ss_pred cceEEeecCCeEEEeeecCCCCCCCCceEEEeeecccc
Q psy531 40 AVHITALLGESVVFNCGVDFPGDTPVPYVLQWEKKIVK 77 (80)
Q Consensus 40 P~~ltA~vGe~VVlnCdvdfP~~~PiPYVvqW~KdG~~ 77 (80)
|...++..|+.|.|.|.+. +.|.|-.+.|.|++.+
T Consensus 8 ~~~~~~~~G~~v~L~C~~~---g~P~P~~v~W~~~~~~ 42 (98)
T cd05758 8 EATQYAILGDKGRVECFIF---STPPPDRIVWTWKENE 42 (98)
T ss_pred CCcEEEeCCCcEEEEEEEc---ccCCCCEeEEEECCEE
Confidence 4455689999999999998 8888877999998853
No 28
>cd07706 IgV_TCR_delta Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) delta chain. IgV_TCR_delta: immunoglobulin (Ig) variable (V) domain of the delta chain of gamma/delta T-cell receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are heterodimers consisting of alpha and beta chains or gamma and delta chains. Each chain contains a variable (V) and a constant (C) region. The majority of T cells contain alpha/beta TCRs but a small subset contain gamma/delta TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. Gamma/delta TCRs recognize intact protein antigens; they recognize protein antigens directly and without antigen processing, and MHC independently of the bound peptide. Gamma/delta T cells can also be stimulated by non-peptide antigens such as small phosphate- or amine-containing compounds. The variable domain of gamma/delta TCRs is responsible for antigen recognition and is
Probab=96.65 E-value=0.0027 Score=40.32 Aligned_cols=36 Identities=22% Similarity=0.496 Sum_probs=29.2
Q ss_pred CCCcceEEeecCCeEEEeeecCCCCCCCCceEEEeeecc
Q psy531 37 ISNAVHITALLGESVVFNCGVDFPGDTPVPYVLQWEKKI 75 (80)
Q Consensus 37 ~~~P~~ltA~vGe~VVlnCdvdfP~~~PiPYVvqW~KdG 75 (80)
.|.|..+++..|++|.|+|.+.... ..+-+.|.|..
T Consensus 3 ~q~~~~v~~~~G~~v~L~C~~~~~~---~~~~v~Wyrq~ 38 (116)
T cd07706 3 TQAQPDVSVQVGEEVTLNCRYETSW---TNYYIFWYKQL 38 (116)
T ss_pred EEeCCceEEcCCCCEEEEEEEeCCC---CceEEEEEEEC
Confidence 4778899999999999999876532 34779999974
No 29
>cd05882 Ig1_Necl-1 First (N-terminal) immunoglobulin (Ig)-like domain of nectin-like molcule-1 (Necl-1, also known as cell adhesion molecule3 (CADM3)). Ig1_Necl-1: domain similar to the N-terminal immunoglobulin (Ig)-like domain of nectin-like molecule-1, Necl-1 (also known as celll adhesion molecule 3 (CADM3), SynCAM2, IGSF4). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1 has Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is specifically expressed in neural tissue, and is important to the format
Probab=96.62 E-value=0.0027 Score=40.68 Aligned_cols=32 Identities=28% Similarity=0.466 Sum_probs=25.3
Q ss_pred ceEEeecCCeEEEeeecCCCCCCCCceEEEeeeccc
Q psy531 41 VHITALLGESVVFNCGVDFPGDTPVPYVLQWEKKIV 76 (80)
Q Consensus 41 ~~ltA~vGe~VVlnCdvdfP~~~PiPYVvqW~KdG~ 76 (80)
..+++..|+.|.|+|.+.. .|. +.++|.|++.
T Consensus 5 ~~~tv~~G~tv~L~C~v~g---~~~-~~v~W~k~~~ 36 (95)
T cd05882 5 QDETVAVGGTVTLKCGVKE---HDN-SSLQWSNTAQ 36 (95)
T ss_pred ccEEEecCCcEEEEEEEeC---CCC-CeEEEeccCc
Confidence 4578999999999998864 443 4589999875
No 30
>cd00099 IgV Immunoglobulin variable domain (IgV). IgV: Immunoglobulin variable domain (IgV). Members of the IgV family are components of immunoglobulin (Ig) and T cell receptors. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. Within the variable domain, there are regions of even more variability called the hypervariable or complementarity-determining regions (CDRs) which are responsible for antigen binding. A predominant feature of most Ig domains is the disulfide bridge connecting 2 beta-sheets with a tryptophan residue packed against the disulfide bond.
Probab=96.57 E-value=0.0026 Score=38.60 Aligned_cols=31 Identities=23% Similarity=0.404 Sum_probs=25.2
Q ss_pred EEeecCCeEEEeeecCCCCCCCCceEEEeeeccc
Q psy531 43 ITALLGESVVFNCGVDFPGDTPVPYVLQWEKKIV 76 (80)
Q Consensus 43 ltA~vGe~VVlnCdvdfP~~~PiPYVvqW~KdG~ 76 (80)
+++..|+.|.|.|.++.+ ..++.+.|.|...
T Consensus 1 ~~v~~G~~v~L~C~~~~~---~~~~~v~W~k~~~ 31 (105)
T cd00099 1 LSVSEGESVTLSCTYSGS---FSSYYIFWYRQKP 31 (105)
T ss_pred CeecCCCCEEEEEEEeCC---cCcceEEEEEECC
Confidence 468899999999999976 3356799999754
No 31
>cd05754 Ig3_Perlecan_like Third immunoglobulin (Ig)-like domain found in Perlecan and similar proteins. Ig3_Perlecan_like: domain similar to the third immunoglobulin (Ig)-like domain found in Perlecan. Perlecan is a large multi-domain heparin sulfate proteoglycan, important in tissue development and organogenesis. Perlecan can be represented as 5 major portions; its fourth major portion (domain IV) is a tandem repeat of immunoglobulin-like domains (Ig2-Ig15), which can vary in size due to alternative splicing. Perlecan binds many cellular and extracellular ligands. Its domain IV region has many binding sites. Some of these have been mapped at the level of individual Ig-like domains, including a site restricted to the Ig5 domain for heparin/sulfatide, a site restricted to the Ig3 domain for nidogen-1 and nidogen-2, a site restricted to Ig4-5 for fibronectin, and sites restricted to Ig2 and to Ig13-15 for fibulin-2.
Probab=96.54 E-value=0.0053 Score=36.83 Aligned_cols=38 Identities=18% Similarity=0.298 Sum_probs=29.3
Q ss_pred CCCcceEEeecCCeEEEeeecCCCCCCCCceEEEeeecccc
Q psy531 37 ISNAVHITALLGESVVFNCGVDFPGDTPVPYVLQWEKKIVK 77 (80)
Q Consensus 37 ~~~P~~ltA~vGe~VVlnCdvdfP~~~PiPYVvqW~KdG~~ 77 (80)
-+.|..++...|+.|.|.|...-. . ++.-+.|.|++.+
T Consensus 5 ~~~p~~~~v~~G~~v~L~C~~~~~--~-~~~~i~W~~~~~~ 42 (85)
T cd05754 5 VEEPRSQEVRPGADVSFICRAKSK--S-PAYTLVWTRVGGG 42 (85)
T ss_pred ecCCCceEEcCCCCEEEEEEcCCC--C-CCcEEEEEECCCc
Confidence 357888899999999999987532 1 3455899998853
No 32
>cd05729 Ig2_FGFR_like Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor and similar proteins. Ig2_FGFR_like: domain similar to the second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor. FGF receptors bind FGF signaling polypeptides. FGFs participate in multiple processes such as morphogenesis, development, and angiogenesis. FGFs bind to four FGF receptor tyrosine kinases (FGFR1, -2, -3, -4). Receptor diversity is controlled by alternative splicing producing splice variants with different ligand binding characteristics and different expression patterns. FGFRs have an extracellular region comprised of three Ig-like domains, a single transmembrane helix, and an intracellular tyrosine kinase domain. Ligand binding and specificity reside in the Ig-like domains 2 and 3, and the linker region that connects these two. FGFR activation and signaling depend on FGF-induced dimerization, a process involving cell surface heparin or heparin
Probab=96.52 E-value=0.0051 Score=35.49 Aligned_cols=32 Identities=22% Similarity=0.408 Sum_probs=24.9
Q ss_pred eEEeecCCeEEEeeecCCCCCCCCceEEEeeecccc
Q psy531 42 HITALLGESVVFNCGVDFPGDTPVPYVLQWEKKIVK 77 (80)
Q Consensus 42 ~ltA~vGe~VVlnCdvdfP~~~PiPYVvqW~KdG~~ 77 (80)
.+.+..|+.+.|.|.+. +.|.|+ ++|.|+|..
T Consensus 3 ~~~~~~G~~~~l~C~~~---~~p~~~-v~W~k~~~~ 34 (85)
T cd05729 3 LHAVPAGSTVRLKCPAS---GNPRPT-ITWLKDGKP 34 (85)
T ss_pred eeEecCCCcEEEEEEcC---CCCCCe-EEEEECCEE
Confidence 45688999999999885 345555 799999764
No 33
>smart00410 IG_like Immunoglobulin like. IG domains that cannot be classified into one of IGv1, IGc1, IGc2, IG.
Probab=96.48 E-value=0.0059 Score=33.37 Aligned_cols=31 Identities=32% Similarity=0.500 Sum_probs=25.6
Q ss_pred cceEEeecCCeEEEeeecCCCCCCCCceEEEeeec
Q psy531 40 AVHITALLGESVVFNCGVDFPGDTPVPYVLQWEKK 74 (80)
Q Consensus 40 P~~ltA~vGe~VVlnCdvdfP~~~PiPYVvqW~Kd 74 (80)
|..+++.+|+.+.|.|.+... ....+.|.++
T Consensus 1 ~~~~~~~~g~~~~l~C~~~~~----~~~~~~W~~~ 31 (86)
T smart00410 1 PPSVTVKEGESVTLSCEVSGS----PPPEVTWYKQ 31 (86)
T ss_pred CCcEEEeCCCeEEEEEEEccC----CCCeEEEEEC
Confidence 456778999999999999865 4567999987
No 34
>smart00409 IG Immunoglobulin.
Probab=96.48 E-value=0.0059 Score=33.37 Aligned_cols=31 Identities=32% Similarity=0.500 Sum_probs=25.6
Q ss_pred cceEEeecCCeEEEeeecCCCCCCCCceEEEeeec
Q psy531 40 AVHITALLGESVVFNCGVDFPGDTPVPYVLQWEKK 74 (80)
Q Consensus 40 P~~ltA~vGe~VVlnCdvdfP~~~PiPYVvqW~Kd 74 (80)
|..+++.+|+.+.|.|.+... ....+.|.++
T Consensus 1 ~~~~~~~~g~~~~l~C~~~~~----~~~~~~W~~~ 31 (86)
T smart00409 1 PPSVTVKEGESVTLSCEVSGS----PPPEVTWYKQ 31 (86)
T ss_pred CCcEEEeCCCeEEEEEEEccC----CCCeEEEEEC
Confidence 456778999999999999865 4567999987
No 35
>cd05745 Ig3_Peroxidasin Third immunoglobulin (Ig)-like domain of peroxidasin. Ig3_Peroxidasin: the third immunoglobulin (Ig)-like domain in peroxidasin. Peroxidasin has a peroxidase domain and interacting extracellular motifs containing four Ig-like domains. It has been suggested that peroxidasin is secreted and has functions related to the stabilization of the extracellular matrix. It may play a part in various other important processes such as removal and destruction of cells which have undergone programmed cell death, and protection of the organism against non-self.
Probab=96.42 E-value=0.0036 Score=36.93 Aligned_cols=28 Identities=29% Similarity=0.523 Sum_probs=23.4
Q ss_pred cCCeEEEeeecCCCCCCCCceEEEeeeccccc
Q psy531 47 LGESVVFNCGVDFPGDTPVPYVLQWEKKIVKN 78 (80)
Q Consensus 47 vGe~VVlnCdvdfP~~~PiPYVvqW~KdG~~~ 78 (80)
.|+.|.|.|.+ .|.|.|. +.|.|+|.+.
T Consensus 1 eG~~v~l~C~~---~g~P~p~-i~W~k~g~~~ 28 (74)
T cd05745 1 EGQTVDFLCEA---QGYPQPV-IAWTKGGSQL 28 (74)
T ss_pred CCCeEEEEeEC---CEecCCE-EEEEECCEEC
Confidence 38999999997 4888887 9999998653
No 36
>cd04980 IgV_L_kappa Immunoglobulin (Ig) light chain, kappa type, variable (V) domain. IgV_L_kappa: Immunoglobulin (Ig) light chain, kappa type, variable (V) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which seem to be functionally identical, and can associate with any of the heavy chains.
Probab=96.41 E-value=0.0052 Score=38.48 Aligned_cols=36 Identities=17% Similarity=0.326 Sum_probs=28.1
Q ss_pred CCCcceEEeecCCeEEEeeecCCCCCCCCceEEEeeecc
Q psy531 37 ISNAVHITALLGESVVFNCGVDFPGDTPVPYVLQWEKKI 75 (80)
Q Consensus 37 ~~~P~~ltA~vGe~VVlnCdvdfP~~~PiPYVvqW~KdG 75 (80)
.|.|..++++.|++|.|+|.++-..+ -+-+.|.|+.
T Consensus 4 ~Q~p~~~~v~~G~~v~L~C~~~~~~~---~~~~~Wyrq~ 39 (106)
T cd04980 4 TQSPATLSVSPGESATISCKASQSVS---SNYLAWYQQK 39 (106)
T ss_pred EECCCcEEECCCCCEEEEEEECCCCC---CCcEEEEEEC
Confidence 57899999999999999999853321 2458998874
No 37
>cd05732 Ig5_NCAM-1_like Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM) and similar proteins. Ig5_NCAM-1 like: domain similar to the fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-non-NCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM mole
Probab=96.40 E-value=0.0044 Score=37.44 Aligned_cols=34 Identities=21% Similarity=0.491 Sum_probs=27.3
Q ss_pred CcceEEeecCCeEEEeeecCCCCCCCCceEEEeeeccc
Q psy531 39 NAVHITALLGESVVFNCGVDFPGDTPVPYVLQWEKKIV 76 (80)
Q Consensus 39 ~P~~ltA~vGe~VVlnCdvdfP~~~PiPYVvqW~KdG~ 76 (80)
.+...++..|+.|.|.|.++ +.|.|. +.|.|++.
T Consensus 7 ~~~~~~~~~g~~v~l~C~~~---g~p~p~-v~W~~~~~ 40 (96)
T cd05732 7 YLENQTAVELEQITLTCEAE---GDPIPE-ITWRRATR 40 (96)
T ss_pred ecCceeEecCCcEEEEEEEe---EcCCCc-EEEEECCc
Confidence 35567899999999999886 566664 88999874
No 38
>cd05867 Ig4_L1-CAM_like Fourth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). Ig4_L1-CAM_like: fourth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM.
Probab=96.37 E-value=0.0037 Score=37.00 Aligned_cols=26 Identities=27% Similarity=0.693 Sum_probs=22.1
Q ss_pred CCeEEEeeecCCCCCCCCceEEEeeecccc
Q psy531 48 GESVVFNCGVDFPGDTPVPYVLQWEKKIVK 77 (80)
Q Consensus 48 Ge~VVlnCdvdfP~~~PiPYVvqW~KdG~~ 77 (80)
|+.|.|.|.+. |.|.| -++|.|+|.+
T Consensus 1 G~~v~l~C~~~---G~P~p-~i~W~k~g~~ 26 (76)
T cd05867 1 GETARLDCQVE---GIPTP-NITWSINGAP 26 (76)
T ss_pred CCeEEEEEEee---EeCCC-eEEEEECCEE
Confidence 89999999764 77888 7999999864
No 39
>cd05715 Ig_P0-like Immunoglobulin (Ig)-like domain of Protein zero (P0) and similar proteins. Ig_P0ex-like: domain similar to the immunoglobulin (Ig) domain of Protein zero (P0). P0 accounts for over 50% of the total protein in peripheral nervous system (PNS) myelin. P0 is a single-pass transmembrane glycoprotein with a highly basic intracellular domain and an extracellular Ig domain. The extracellular domain of P0 (P0-ED) is similar to the Ig variable domain, carrying one acceptor sequence for N-linked glycosylation. P0 plays a role in membrane adhesion in the spiral wraps of the myelin sheath. The intracellular domain is thought to mediate membrane apposition of the cytoplasmic faces and may, through electrostatic interactions, interact directly with lipid headgroups. It is thought that homophilic interactions of the P0 extracellular domain mediate membrane juxtaposition in the extracellular space of PNS myelin. This group also contains the Ig domain of Sodium channel subunit beta-2
Probab=96.27 E-value=0.011 Score=37.94 Aligned_cols=37 Identities=14% Similarity=0.240 Sum_probs=27.5
Q ss_pred CcceEEeecCCeEEEeeecCCCCCCCCceEEEeeecc
Q psy531 39 NAVHITALLGESVVFNCGVDFPGDTPVPYVLQWEKKI 75 (80)
Q Consensus 39 ~P~~ltA~vGe~VVlnCdvdfP~~~PiPYVvqW~KdG 75 (80)
-|..+++..|+.|.|+|.+..+....--+.++|.|+.
T Consensus 4 ~p~~v~v~~G~~vtL~C~~s~~~~~~~~~~v~W~~~~ 40 (116)
T cd05715 4 TPREVYAVNGSDVRLKCTFSSSEPISDDISVTWSFQP 40 (116)
T ss_pred cCCeEEEEcCCCeEEEeEEeCCCCcCCceEEEEEEec
Confidence 4788899999999999998765322122569998754
No 40
>cd05857 Ig2_FGFR Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor. Ig2_FGFR: second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor. FGF receptors bind FGF signaling polypeptides. FGFs participate in multiple processes such as morphogenesis, development, and angiogenesis. FGFs bind to four FGF receptor tyrosine kinases (FGFR1, -2, -3, -4). Receptor diversity is controlled by alternative splicing producing splice variants with different ligand binding characteristics and different expression patterns. FGFRs have an extracellular region comprised of three IG-like domains, a single transmembrane helix, and an intracellular tyrosine kinase domain. Ligand binding and specificity reside in the Ig-like domains 2 and 3, and the linker region that connects these two. FGFR activation and signaling depend on FGF-induced dimerization, a process involving cell surface heparin or heparin sulfate proteoglycans.
Probab=96.25 E-value=0.009 Score=35.33 Aligned_cols=30 Identities=23% Similarity=0.548 Sum_probs=23.9
Q ss_pred EeecCCeEEEeeecCCCCCCCCceEEEeeecccc
Q psy531 44 TALLGESVVFNCGVDFPGDTPVPYVLQWEKKIVK 77 (80)
Q Consensus 44 tA~vGe~VVlnCdvdfP~~~PiPYVvqW~KdG~~ 77 (80)
....|+.+.|.|.+. |.|.| .++|.|+|.+
T Consensus 5 ~v~~G~~~~L~C~~~---g~P~p-~i~W~k~g~~ 34 (85)
T cd05857 5 AVPAANTVKFRCPAA---GNPTP-TMRWLKNGKE 34 (85)
T ss_pred EcCCCCEEEEEEEcC---CCCCC-EEEEEECCEE
Confidence 367899999999885 44555 6899999865
No 41
>cd05848 Ig1_Contactin-5 First Ig domain of contactin-5. Ig1_Contactin-5: First Ig domain of the neural cell adhesion molecule contactin-5. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains, anchored to the membrane by glycosylphosphatidylinositol. The different contactins show different expression patterns in the central nervous system. In rats, a lack of contactin-5 (NB-2) results in an impairment of the neuronal activity in the auditory system. Contactin-5 is expressed specifically in the postnatal nervous system, peaking at about 3 weeks postnatal. Contactin-5 is highly expressed in the adult human brain in the occipital lobe and in the amygdala; lower levels of expression have been detected in the corpus callosum, caudate nucleus, and spinal cord.
Probab=96.19 E-value=0.0076 Score=37.68 Aligned_cols=35 Identities=20% Similarity=0.425 Sum_probs=26.7
Q ss_pred CcceEEe---ecCCeEEEeeecCCCCCCCCceEEEeeecccc
Q psy531 39 NAVHITA---LLGESVVFNCGVDFPGDTPVPYVLQWEKKIVK 77 (80)
Q Consensus 39 ~P~~ltA---~vGe~VVlnCdvdfP~~~PiPYVvqW~KdG~~ 77 (80)
+|..++. ..|+.|.|.|.+. |.|.| .++|.|+|.+
T Consensus 7 ~p~~~~~~~~~~g~~v~l~C~~~---G~P~P-~i~W~k~g~~ 44 (94)
T cd05848 7 EPDDAIFPTDSDEKKVILNCEAR---GNPVP-TYRWLRNGTE 44 (94)
T ss_pred CCCcEEccCCCCCCEEEEEEEee---ecCCC-EEEEEECCeE
Confidence 4555433 3589999999984 88888 7999999865
No 42
>cd05880 Ig_EVA1 Immunoglobulin (Ig)-like domain of epithelial V-like antigen 1 (EVA). Ig_EVA: immunoglobulin (Ig) domain of epithelial V-like antigen 1 (EVA). EVA is also known as myelin protein zero-like 2. EVA is an adhesion molecule, which may play a role in structural organization of the thymus and early lymphocyte development.
Probab=96.18 E-value=0.012 Score=38.34 Aligned_cols=36 Identities=17% Similarity=0.370 Sum_probs=26.3
Q ss_pred CcceEEeecCCeEEEeeecCCCCCCCCceEEEeeec
Q psy531 39 NAVHITALLGESVVFNCGVDFPGDTPVPYVLQWEKK 74 (80)
Q Consensus 39 ~P~~ltA~vGe~VVlnCdvdfP~~~PiPYVvqW~Kd 74 (80)
-|..++|..|++|.|+|.+......+..+.++|.++
T Consensus 4 ~~~~v~~~~G~~v~L~C~~s~~~~~~~~~~i~W~~~ 39 (115)
T cd05880 4 TSKEVEAVNGTDVRLKCTFSSSAPIGDTLVITWNFR 39 (115)
T ss_pred cCceEEEEcCCCEEEEEEEEeCCCCCCcEEEEEEEE
Confidence 467899999999999999865422222356999754
No 43
>cd05865 Ig1_NCAM-1 First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1. Ig1_NCAM-1: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1. NCAM-1 plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-nonNCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves the Ig1, Ig2, and Ig3 domains. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the surface of opposing cells (trans
Probab=96.15 E-value=0.0072 Score=38.56 Aligned_cols=37 Identities=19% Similarity=0.154 Sum_probs=29.8
Q ss_pred CCCcceEEeecCCeEEEeeecCCCCCCCCceEEEeee-ccc
Q psy531 37 ISNAVHITALLGESVVFNCGVDFPGDTPVPYVLQWEK-KIV 76 (80)
Q Consensus 37 ~~~P~~ltA~vGe~VVlnCdvdfP~~~PiPYVvqW~K-dG~ 76 (80)
...|...+..+|+.|.|.|.+ .|.|.|--++|.| +|.
T Consensus 4 ~~~p~~~~v~~G~~v~l~C~v---~G~P~~p~i~W~~~~g~ 41 (96)
T cd05865 4 DIVPSQGEISVGESKFFLCQV---AGEAKDKDISWFSPNGE 41 (96)
T ss_pred EEeCCccEECCCCeEEEEEEE---eCCCCCCEEEEECCCCc
Confidence 346777789999999999988 4777666899998 664
No 44
>cd05850 Ig1_Contactin-2 First Ig domain of contactin-2. Ig1_Contactin-2: First Ig domain of the neural cell adhesion molecule contactin-2-like. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. It may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module by contacts between IG domains 1 and 4, and domains 2 and 3. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-2 is also expressed in retinal amacrine cells in the developing c
Probab=96.12 E-value=0.0083 Score=37.38 Aligned_cols=36 Identities=14% Similarity=0.326 Sum_probs=27.0
Q ss_pred CcceE---EeecCCeEEEeeecCCCCCCCCceEEEeeeccccc
Q psy531 39 NAVHI---TALLGESVVFNCGVDFPGDTPVPYVLQWEKKIVKN 78 (80)
Q Consensus 39 ~P~~l---tA~vGe~VVlnCdvdfP~~~PiPYVvqW~KdG~~~ 78 (80)
+|..+ ++..|+.|.|.|.+. +.|.| .++|.|+|.+.
T Consensus 7 ~P~~~~~~~~~~g~~v~l~C~a~---g~P~p-~i~W~~~g~~l 45 (94)
T cd05850 7 QPSSLLFPEGSPEEKVTLGCRAR---ASPPA-TYRWKMNGTEI 45 (94)
T ss_pred CCCCEEecCCCCCCeEEEEeEce---eCCCC-EEEEEECCEEC
Confidence 44444 456678999999984 77777 68999998753
No 45
>cd05765 Ig_3 Subgroup of the immunoglobulin (Ig) superfamily. Ig_3: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.
Probab=96.05 E-value=0.0091 Score=34.77 Aligned_cols=25 Identities=40% Similarity=0.946 Sum_probs=20.4
Q ss_pred CCeEEEeeecCCCCCCCCceEEEeeeccc
Q psy531 48 GESVVFNCGVDFPGDTPVPYVLQWEKKIV 76 (80)
Q Consensus 48 Ge~VVlnCdvdfP~~~PiPYVvqW~KdG~ 76 (80)
|+.|.|.|.+. +.|.|. +.|.|++.
T Consensus 1 G~~v~l~C~~~---g~P~p~-v~W~k~~~ 25 (81)
T cd05765 1 GETASFHCDVT---GRPPPE-ITWEKQVH 25 (81)
T ss_pred CCcEEEEeecc---ccCCCc-EEEEecCC
Confidence 89999999774 777776 89999853
No 46
>PF07686 V-set: Immunoglobulin V-set domain; InterPro: IPR013106 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds. There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents the V-set domains, which are Ig-like domains resembling the antibody variable domain. V-set domains are found in diverse protein families, including immunoglobulin light and heavy chains; in several T-cell receptors such as CD2 (Cluster of Differentiation 2), CD4, CD80, and CD86; in myelin membrane adhesion molecules; in junction adhesion molecules (JAM); in tyrosine-protein kinase receptors; and in the programmed cell death protein 1 (PD1).; PDB: 1PY9_A 2NXY_D 1U9K_B 3RNK_A 3BP6_A 3BIK_B 3SBW_A 1NPU_A 3BP5_A 3RNQ_A ....
Probab=96.03 E-value=0.013 Score=34.89 Aligned_cols=35 Identities=20% Similarity=0.344 Sum_probs=28.6
Q ss_pred CcceEEeecCCeEEEeeecCCCCCCCCceEEEeeeccc
Q psy531 39 NAVHITALLGESVVFNCGVDFPGDTPVPYVLQWEKKIV 76 (80)
Q Consensus 39 ~P~~ltA~vGe~VVlnCdvdfP~~~PiPYVvqW~KdG~ 76 (80)
.|..+++..|++|.|.|.+. + ....+.+.|.|...
T Consensus 7 ~~~~v~~~~G~~v~L~C~~~-~--~~~~~~v~W~~~~~ 41 (114)
T PF07686_consen 7 PPSPVTVQEGESVTLPCSYS-S--SSNQSSVYWYRQSP 41 (114)
T ss_dssp EESEEEEETTSEEEEEEEEE-S--SSSGSEEEEEEEET
T ss_pred eCCeEEEecCCCEEEEEEEe-C--CCCcceEEEEEECc
Confidence 58889999999999999999 3 33456799999644
No 47
>PF00047 ig: Immunoglobulin domain The Prosite family only concerns antibodies and MHCs.; InterPro: IPR013151 Members of the immunoglobulin superfamily are found in hundreds of proteins of different functions. Examples include antibodies, the giant muscle kinase titin and receptor tyrosine kinases. Immunoglobulin-like domains may be involved in protein-protein and protein-ligand interactions. The Pfam alignments do not include the first and last strand of the immunoglobulin-like domain.; PDB: 1B6U_A 3O4O_C 3VH8_H 1BIH_A 2C9A_A 2V5Y_A 1BQH_K 2ATP_A 3B9K_A 1NEZ_H ....
Probab=96.01 E-value=0.007 Score=33.91 Aligned_cols=28 Identities=32% Similarity=0.629 Sum_probs=23.4
Q ss_pred CCeEEEeeecCCCCCCCCceEEEeeeccccc
Q psy531 48 GESVVFNCGVDFPGDTPVPYVLQWEKKIVKN 78 (80)
Q Consensus 48 Ge~VVlnCdvdfP~~~PiPYVvqW~KdG~~~ 78 (80)
|++|.|.|.+ .+.+.+.-+.|.|.+...
T Consensus 1 G~~v~L~C~~---~~~~~~~~~~W~~~~~~~ 28 (64)
T PF00047_consen 1 GSSVTLTCSV---SSGPPPTTVTWSKNGQSL 28 (64)
T ss_dssp TSEEEEEEEE---EESSSTSEEEEEETTTTT
T ss_pred CCeEEEEeec---CCCCCCcEEEEEECCccc
Confidence 8999999999 566677889999998643
No 48
>cd05739 Ig3_RPTP_IIa_LAR_like Third immunoglobulin (Ig)-like domain of the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. Ig3_RPTP_IIa_LAR_like: domain similar to the third immunoglobulin (Ig)-like domain found in the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. LAR belongs to the RPTP type IIa subfamily. Members of this subfamily are cell adhesion molecule-like proteins involved in central nervous system (CNS) development. They have large extracellular portions, comprised of multiple IG-like domains and two to nine fibronectin type III (FNIII) domains, and a cytoplasmic portion having two tandem phosphatase domains. Included in this group is Drosophila LAR (DLAR).
Probab=95.98 E-value=0.0084 Score=35.75 Aligned_cols=26 Identities=35% Similarity=0.703 Sum_probs=22.5
Q ss_pred CCeEEEeeecCCCCCCCCceEEEeeecccc
Q psy531 48 GESVVFNCGVDFPGDTPVPYVLQWEKKIVK 77 (80)
Q Consensus 48 Ge~VVlnCdvdfP~~~PiPYVvqW~KdG~~ 77 (80)
|+.|.|.|... |.|.|- ++|.|+|.+
T Consensus 1 G~~v~L~C~a~---G~P~P~-v~W~k~g~~ 26 (69)
T cd05739 1 GGSVNLTCVAV---GAPMPY-VKWMKGGEE 26 (69)
T ss_pred CCeEEEEEEee---ecCCCE-EEEEECCEE
Confidence 78999999875 889995 889999865
No 49
>cd04978 Ig4_L1-NrCAM_like Fourth immunoglobulin (Ig)-like domain of L1, Ng-CAM (Neuron-glia CAM cell adhesion molecule), and NrCAM (Ng-CAM-related). Ig4_L1-NrCAM_like: fourth immunoglobulin (Ig)-like domain of L1, Ng-CAM (Neuron-glia CAM cell adhesion molecule), and NrCAM (Ng-CAM-related). These proteins belong to the L1 subfamily of cell adhesion molecules (CAMs) and are comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. These molecules are primarily expressed in the nervous system. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth.
Probab=95.97 E-value=0.0095 Score=34.42 Aligned_cols=26 Identities=27% Similarity=0.639 Sum_probs=22.0
Q ss_pred CCeEEEeeecCCCCCCCCceEEEeeecccc
Q psy531 48 GESVVFNCGVDFPGDTPVPYVLQWEKKIVK 77 (80)
Q Consensus 48 Ge~VVlnCdvdfP~~~PiPYVvqW~KdG~~ 77 (80)
|+.|.|.|.+. |.|.|- +.|.|+|.+
T Consensus 1 G~~~~l~C~~~---g~P~p~-i~W~~~g~~ 26 (76)
T cd04978 1 GETGRLDCEAE---GIPQPT-ITWRLNGVP 26 (76)
T ss_pred CCeEEEEEEce---eeCCCE-EEEEECCEE
Confidence 89999999874 788875 899999864
No 50
>cd07701 Ig1_Necl-3 First (N-terminal) immunoglobulin (Ig)-like domain of nectin-like molecule-3 (Necl-3, also known as cell adhesion molecule 2 (CADM2)). Ig1_Necl-3: domain similar to the N-terminal immunoglobulin (Ig)-like domain of nectin-like molecule-3, Necl-3 (also known as cell adhesion molecule 2 (CADM2), SynCAM2, IGSF4D). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region, belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-3 accumulates in central and peripheral nervous system tissue, and has been shown to selectively interact with oligodendrocytes.
Probab=95.97 E-value=0.011 Score=37.40 Aligned_cols=30 Identities=27% Similarity=0.555 Sum_probs=24.0
Q ss_pred cceEEeecCCeEEEeeecCCCCCCCCceEEEeee
Q psy531 40 AVHITALLGESVVFNCGVDFPGDTPVPYVLQWEK 73 (80)
Q Consensus 40 P~~ltA~vGe~VVlnCdvdfP~~~PiPYVvqW~K 73 (80)
++.+++..|+.|.|.|.+. +.|.|+ +.|.|
T Consensus 4 ~~~v~v~eG~~v~L~C~~~---~~p~~~-v~W~~ 33 (95)
T cd07701 4 TQNVTVVEGGTANLTCRVD---QNDNTS-LQWSN 33 (95)
T ss_pred cceEEEecCCcEEEEEEEe---cCCceE-EEEeC
Confidence 5678999999999999885 445555 68975
No 51
>cd05717 Ig1_Necl-1-3_like First (N-terminal) immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 - Necl-3 (also known as cell adhesion molecules CADM3, CADM1, and CADM2 respectively). Ig1_Necl-1-3_like: N-terminal immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 (also known as cell adhesion molecule 3 (CADM3)), Necl-2 (CADM1), and Necl-3 (CADM2). At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1, Necl-2, and Necl-3 have Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is specifically expressed in neural tissue, and is important to the form
Probab=95.88 E-value=0.013 Score=35.88 Aligned_cols=30 Identities=23% Similarity=0.497 Sum_probs=22.6
Q ss_pred cceEEeecCCeEEEeeecCCCCCCCCceEEEeee
Q psy531 40 AVHITALLGESVVFNCGVDFPGDTPVPYVLQWEK 73 (80)
Q Consensus 40 P~~ltA~vGe~VVlnCdvdfP~~~PiPYVvqW~K 73 (80)
+..+++..|+.|.|+|.+.- .+-| .++|.|
T Consensus 4 ~~~~~v~~G~~v~L~C~~~~---~~~~-~v~W~~ 33 (95)
T cd05717 4 TQDVTVVEGGTATLKCRVKN---NDNS-SLQWSN 33 (95)
T ss_pred CCcEEEcCCCCEEEEEEECC---CCCc-eEEEeC
Confidence 35678999999999999853 2333 499975
No 52
>cd05852 Ig5_Contactin-1 Fifth Ig domain of contactin-1. Ig5_Contactin-1: fifth Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma.
Probab=95.87 E-value=0.01 Score=35.85 Aligned_cols=26 Identities=27% Similarity=0.632 Sum_probs=21.6
Q ss_pred CCeEEEeeecCCCCCCCCceEEEeeecccc
Q psy531 48 GESVVFNCGVDFPGDTPVPYVLQWEKKIVK 77 (80)
Q Consensus 48 Ge~VVlnCdvdfP~~~PiPYVvqW~KdG~~ 77 (80)
|+.|.|.|.+. +.|.| .++|.|++..
T Consensus 1 G~~~~l~C~~~---g~P~p-~v~W~k~~~~ 26 (73)
T cd05852 1 GGRVIIECKPK---AAPKP-KFSWSKGTEL 26 (73)
T ss_pred CCeEEEEEecc---eeCCC-EEEEEeCCEe
Confidence 88999999875 67777 7899999864
No 53
>cd04977 Ig1_NCAM-1_like First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1 and similar proteins. Ig1_NCAM-1 like: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1. NCAM-1 plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-nonNCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves the Ig1, Ig2, and Ig3 domains. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the s
Probab=95.87 E-value=0.0094 Score=37.01 Aligned_cols=34 Identities=24% Similarity=0.272 Sum_probs=26.9
Q ss_pred CCcceEEeecCCeEEEeeecCCCCCCCCceEEEeee-ccc
Q psy531 38 SNAVHITALLGESVVFNCGVDFPGDTPVPYVLQWEK-KIV 76 (80)
Q Consensus 38 ~~P~~ltA~vGe~VVlnCdvdfP~~~PiPYVvqW~K-dG~ 76 (80)
..|...++.+|+.|.|.|.+. |.| | -++|.| +|.
T Consensus 5 v~p~~~~v~~G~~~~l~C~~~---G~p-~-~i~W~~~~~~ 39 (92)
T cd04977 5 IVPSQGEISVGESKFFLCQVI---GEP-K-DISWFSPNGE 39 (92)
T ss_pred EecCcEEECCCCeEEEEEEeE---eeC-C-eEEEECCCCC
Confidence 467778999999999999985 444 4 799998 443
No 54
>cd05740 Ig_CEACAM_D4 Fourth immunoglobulin (Ig)-like domain of carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM). Ig_CEACAM_D4: immunoglobulin (Ig)-like domain 4 in carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) protein subfamily. The CEA family is a group of anchored or secreted glycoproteins, expressed by epithelial cells, leukocytes, endothelial cells and placenta. The CEA family is divided into the CEACAM and pregnancy-specific glycoprotein (PSG) subfamilies. This group represents the CEACAM subfamily. CEACAM1 has many important cellular functions, it is a cell adhesion molecule, and a signaling molecule that regulates the growth of tumor cells, it is an angiogenic factor, and is a receptor for bacterial and viral pathogens, including mouse hepatitis virus (MHV). In mice, four isoforms of CEACAM1 generated by alternative splicing have either two [D1, D4] or four [D1-D4] Ig-like domains on the cell surface. This family corresponds to the
Probab=95.83 E-value=0.013 Score=36.77 Aligned_cols=36 Identities=8% Similarity=0.152 Sum_probs=29.1
Q ss_pred CCCcceEEeecCCeEEEeeecCCCCCCCCceEEEeeecccc
Q psy531 37 ISNAVHITALLGESVVFNCGVDFPGDTPVPYVLQWEKKIVK 77 (80)
Q Consensus 37 ~~~P~~ltA~vGe~VVlnCdvdfP~~~PiPYVvqW~KdG~~ 77 (80)
.+.|..+++..|++|.|.|..+ |. .| .+.|.|+|..
T Consensus 7 ~~~~~~~~v~~g~~v~l~C~a~---g~-~p-~i~W~kng~~ 42 (91)
T cd05740 7 NNSVGNQPPEDNQPVTLTCEAE---GQ-AT-YIWWVNNGSL 42 (91)
T ss_pred ccccCccccccCCcEEEEEEeC---CC-CC-EEEEEECCEE
Confidence 5677888999999999999987 44 44 4799999864
No 55
>cd05899 IgV_TCR_beta Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) bet a chain. IgV_TCR_beta: immunoglobulin (Ig) variable domain of the beta chain of alpha/beta T-cell antigen receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are composed of alpha and beta, or gamma and delta, polypeptide chains with variable (V) and constant (C) regions. This group includes the variable domain of the alpha chain of alpha/beta TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. The variable domain of TCRs is responsible for antigen recognition, and is located at the N-terminus of the receptor. Gamma/delta TCRs recognize intact protein antigens; they recognize proteins antigens directly and without antigen processing, and MHC independently of the bound peptide.
Probab=95.80 E-value=0.013 Score=36.95 Aligned_cols=35 Identities=14% Similarity=0.184 Sum_probs=28.2
Q ss_pred CCCcceEEeecCCeEEEeeecCCCCCCCCceEEEeeeccc
Q psy531 37 ISNAVHITALLGESVVFNCGVDFPGDTPVPYVLQWEKKIV 76 (80)
Q Consensus 37 ~~~P~~ltA~vGe~VVlnCdvdfP~~~PiPYVvqW~KdG~ 76 (80)
.|.|..++++.|+.|-|+|.+.- + .+-|.|.|+..
T Consensus 2 ~Q~p~~~~v~~G~~v~l~C~~~~----~-~~~v~Wykq~~ 36 (110)
T cd05899 2 TQSPRYLIKGRGQSVTLRCSQTS----G-HDNMYWYRQDP 36 (110)
T ss_pred EECCCceEEcCCCcEEEEEEECC----C-CCEEEEEEECC
Confidence 47899999999999999998754 2 24588999853
No 56
>cd05866 Ig1_NCAM-2 First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-2. Ig1_NCAM-2: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-2 (OCAM/mamFas II, RNCAM). NCAM-2 is organized similarly to NCAM , including five N-terminal Ig-like domains and two fibronectin type III domains. NCAM-2 is differentially expressed in the developing and mature olfactory epithelium (OE), and may function like NCAM, as an adhesion molecule.
Probab=95.77 E-value=0.0091 Score=38.00 Aligned_cols=32 Identities=22% Similarity=0.453 Sum_probs=26.2
Q ss_pred CCcceEEeecCCeEEEeeecCCCCCCCCceEEEeeec
Q psy531 38 SNAVHITALLGESVVFNCGVDFPGDTPVPYVLQWEKK 74 (80)
Q Consensus 38 ~~P~~ltA~vGe~VVlnCdvdfP~~~PiPYVvqW~Kd 74 (80)
.+|..+++..|+.|.|.|.+ .|.|. .++|.|+
T Consensus 5 ~~~~~~~v~~G~~v~l~C~~---~G~P~--~v~W~k~ 36 (92)
T cd05866 5 ISLSKVELSVGESKFFTCTA---IGEPE--SIDWYNP 36 (92)
T ss_pred EEecceEEcCCCeEEEEEEE---EEeCC--eEEEEeC
Confidence 46778889999999999997 46554 6899985
No 57
>cd04969 Ig5_Contactin_like Fifth Ig domain of contactin. Ig5_Contactin_like: Fifth Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week
Probab=95.74 E-value=0.012 Score=34.38 Aligned_cols=26 Identities=27% Similarity=0.673 Sum_probs=21.5
Q ss_pred CCeEEEeeecCCCCCCCCceEEEeeecccc
Q psy531 48 GESVVFNCGVDFPGDTPVPYVLQWEKKIVK 77 (80)
Q Consensus 48 Ge~VVlnCdvdfP~~~PiPYVvqW~KdG~~ 77 (80)
|+.|.|.|.+. +.|.| .+.|.|++..
T Consensus 1 G~~v~L~C~~~---g~P~p-~v~W~k~~~~ 26 (73)
T cd04969 1 GGDVIIECKPK---AAPKP-TISWSKGTEL 26 (73)
T ss_pred CCeEEEEEeee---EcCCC-EEEEEECCEE
Confidence 88999999974 66766 6899999864
No 58
>cd05878 Ig_Aggrecan_like Immunoglobulin (Ig)-like domain of the aggrecan-like chondroitin sulfate proteoglycan core protein (CSPG). Ig_Aggrecan_like: immunoglobulin (Ig)-like domain of the aggrecan-like chondroitin sulfate proteoglycan core protein (CSPG)s. Included in this group are the Ig domains of other CSPGs: versican, and neurocan. In CSPGs this Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, aggrecan forms cartilage link protein stabilized aggregates with hyaluronan (HA). These aggregates contribute to the tissue's load bearing properties. Aggrecan and versican have a wide distribution in connective tissue and extracellular matrices. Neurocan is localized almost exclusively in nervous tissue. Aggregates having other CSPGs substi
Probab=95.52 E-value=0.015 Score=37.63 Aligned_cols=28 Identities=29% Similarity=0.567 Sum_probs=22.5
Q ss_pred cCCeEEEeeecCCCCCCC------CceEEEeeec
Q psy531 47 LGESVVFNCGVDFPGDTP------VPYVLQWEKK 74 (80)
Q Consensus 47 vGe~VVlnCdvdfP~~~P------iPYVvqW~Kd 74 (80)
.|++|.|+|.+..+...+ -...++|.|+
T Consensus 1 ~G~~V~LpC~~~~~~~~~~~~~~~~~~~i~W~k~ 34 (110)
T cd05878 1 LSSSVLLPCYFTLPPALPPPSNAPESPRIKWTKL 34 (110)
T ss_pred CCCCEEEeeEeeCCccccccccCCCCCEEEEEEe
Confidence 599999999998874332 2588999997
No 59
>cd05902 Ig_Neurocan Immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), neurocan. Ig_Neurocan: immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), neurocan. In CSPGs, the Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, the CSPG aggrecan (not included in this group) forms cartilage link protein stabilized aggregates with HA. These aggregates contribute to the tissue's load bearing properties. Unlike aggrecan which is widely distributed in connective tissue and extracellular matrices, neurocan is localized almost exclusively in nervous tissue. Aggregates having other CSPGs substituting for aggrecan may contribute to the structural integrity of many differen
Probab=95.47 E-value=0.015 Score=38.66 Aligned_cols=28 Identities=29% Similarity=0.602 Sum_probs=23.0
Q ss_pred cCCeEEEeeecCCC-C--CCCCceEEEeeec
Q psy531 47 LGESVVFNCGVDFP-G--DTPVPYVLQWEKK 74 (80)
Q Consensus 47 vGe~VVlnCdvdfP-~--~~PiPYVvqW~Kd 74 (80)
.|++|.|+|.+.++ . +.+-++.++|.|.
T Consensus 1 ~~~~v~LpC~~~~~p~~~~~~~~~~I~W~k~ 31 (110)
T cd05902 1 LSSSVLLPCVFTLPPSASSPPEGPRIKWTKL 31 (110)
T ss_pred CCCcEEEeeEEEcCccccCCCCCCEEEEEEe
Confidence 48999999998885 3 3456799999997
No 60
>PHA02826 IL-1 receptor-like protein; Provisional
Probab=95.45 E-value=0.031 Score=41.13 Aligned_cols=38 Identities=18% Similarity=0.365 Sum_probs=27.2
Q ss_pred CcceEEeecCCeEEEeeecCC-CCC---C---CCceEEEeeeccc
Q psy531 39 NAVHITALLGESVVFNCGVDF-PGD---T---PVPYVLQWEKKIV 76 (80)
Q Consensus 39 ~P~~ltA~vGe~VVlnCdvdf-P~~---~---PiPYVvqW~KdG~ 76 (80)
+..-+.+..||.|+|.|.++. |.. . .--|-|+|.|.+.
T Consensus 28 ~~~~~~v~eGe~v~L~C~~~~~~~~~~~~~~~~~~~~V~W~k~~s 72 (227)
T PHA02826 28 DLTPVYAKFGDPMVLLCTGKHYKKSIFFDKTFITSYNVTWSKTDS 72 (227)
T ss_pred CcceEEecCCCCEEEEccccccccccccccccCCCccEEEEeCCe
Confidence 345577899999999999874 411 1 2347799999864
No 61
>cd04974 Ig3_FGFR Third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Ig3_FGFR: third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for FGFs.
Probab=95.44 E-value=0.018 Score=35.38 Aligned_cols=24 Identities=38% Similarity=0.785 Sum_probs=20.4
Q ss_pred CCeEEEeeecCCCCCCCCceEEEeeecc
Q psy531 48 GESVVFNCGVDFPGDTPVPYVLQWEKKI 75 (80)
Q Consensus 48 Ge~VVlnCdvdfP~~~PiPYVvqW~KdG 75 (80)
|+.|.|.|.+. +.|.|- ++|.|++
T Consensus 1 G~~v~l~C~v~---g~P~P~-i~W~k~~ 24 (90)
T cd04974 1 GSDVEFHCKVY---SDAQPH-IQWLKHV 24 (90)
T ss_pred CCcEEEEEEEe---CCCCCe-EEEEEec
Confidence 78999999986 677777 9999974
No 62
>cd05716 Ig_pIgR Immunoglobulin (Ig)-like domain in the polymeric Ig receptor (pIgR). Ig_pIgR: Immunoglobulin (Ig)-like domain in the polymeric Ig receptor (pIgR). pIgR delivers dimeric IgA and pentameric IgM to mucosal secretions. Polymeric immunoglobulin (pIgs) are the first defense against pathogens and toxins. IgA and IgM can form polymers via an 18-residue extension at their c-termini referred to as the tailpiece. pIgR transports pIgs across mucosal epithelia into mucosal secretions. Human pIgR is a glycosylated type I transmembrane protein, comprised of a 620 residue extracellular region, a 23 residue transmembrane region, and a 103 residue cytoplasmic tail. The extracellular region contains five domains that share sequence similarity with Ig variable (v) regions.
Probab=95.36 E-value=0.031 Score=34.28 Aligned_cols=31 Identities=29% Similarity=0.341 Sum_probs=23.7
Q ss_pred EEeecCCeEEEeeecCCCCCCCCceEEEeeeccc
Q psy531 43 ITALLGESVVFNCGVDFPGDTPVPYVLQWEKKIV 76 (80)
Q Consensus 43 ltA~vGe~VVlnCdvdfP~~~PiPYVvqW~KdG~ 76 (80)
++|..|++|.|+|.++...+. +.+.|.|...
T Consensus 2 v~~~~G~~vtl~C~~~~~~~~---~~~~W~r~~~ 32 (98)
T cd05716 2 VTGELGGSVTIPCPYPPKNRS---YEKYWCKWGS 32 (98)
T ss_pred EEEEeCCeEEEEeeCCCCCCC---cEeEeECCCC
Confidence 579999999999998754222 4568998753
No 63
>PF13895 Ig_2: Immunoglobulin domain; PDB: 2V5R_B 2V5M_A 2V5S_B 2GI7_A 3LAF_A 4DEP_C 3O4O_B 2EC8_A 2E9W_A 1J87_A ....
Probab=95.12 E-value=0.025 Score=31.82 Aligned_cols=31 Identities=29% Similarity=0.463 Sum_probs=24.5
Q ss_pred EEeecCCeEEEeeecCCCCCCCCceEEEeeecccc
Q psy531 43 ITALLGESVVFNCGVDFPGDTPVPYVLQWEKKIVK 77 (80)
Q Consensus 43 ltA~vGe~VVlnCdvdfP~~~PiPYVvqW~KdG~~ 77 (80)
.+...|+.+.|.|.++ +.|. .-++|.|++..
T Consensus 9 ~~v~~g~~~~l~C~~~---~~p~-~~~~w~~~~~~ 39 (80)
T PF13895_consen 9 QSVEEGDSVTLTCSVS---GNPP-PQVQWYKNGSP 39 (80)
T ss_dssp SEEETTSEEEEEEEEE---SSSS-SEEEEEETTEE
T ss_pred eEEeCCCcEEEEEEEE---cccc-eeeeeeeeeee
Confidence 4478899999999988 4444 56999998754
No 64
>cd05858 Ig3_FGFR-2 Third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor 2 (FGFR2). Ig3_FGFR-2-like; domain similar to the third immunoglobulin (Ig)-like domain of human fibroblast growth factor receptor 2 (FGFR2). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for FGFs. FGFR2 is required for male sex determination.
Probab=94.99 E-value=0.038 Score=33.72 Aligned_cols=24 Identities=38% Similarity=0.754 Sum_probs=20.3
Q ss_pred CCeEEEeeecCCCCCCCCceEEEeeecc
Q psy531 48 GESVVFNCGVDFPGDTPVPYVLQWEKKI 75 (80)
Q Consensus 48 Ge~VVlnCdvdfP~~~PiPYVvqW~KdG 75 (80)
|+.|.|.|.+. +.|.| .++|.|++
T Consensus 1 G~~v~L~C~~~---g~P~P-~i~W~k~~ 24 (90)
T cd05858 1 GSTVEFVCKVY---SDAQP-HIQWLKHV 24 (90)
T ss_pred CCeEEEEEEEe---cCCCC-EEEEEEec
Confidence 89999999984 77888 59999964
No 65
>cd04967 Ig1_Contactin First Ig domain of contactin. Ig1_Contactin: First Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 weeks postnata
Probab=94.95 E-value=0.033 Score=33.92 Aligned_cols=29 Identities=21% Similarity=0.394 Sum_probs=22.9
Q ss_pred eecCCeEEEeeecCCCCCCCCceEEEeeecccc
Q psy531 45 ALLGESVVFNCGVDFPGDTPVPYVLQWEKKIVK 77 (80)
Q Consensus 45 A~vGe~VVlnCdvdfP~~~PiPYVvqW~KdG~~ 77 (80)
+..|+.|.|.|.+ .+.|.| .+.|.|+|.+
T Consensus 16 ~~~~~~~~l~C~~---~g~p~p-~i~W~k~~~~ 44 (91)
T cd04967 16 ESDEGKVSLNCRA---RGSPPP-TYRWLMNGTE 44 (91)
T ss_pred CCCCCEEEEEEee---eEcCCC-EEEEEECCEE
Confidence 4566889999998 355666 7999999865
No 66
>cd07690 Ig1_CD4 First immunoglobulin (Ig) domain of CD4. Ig1_CD4; first immunoglobulin (Ig) domain of CD4. CD4 and CD8 are the two primary co-receptor proteins found on the surface of T cells, and the presence of either CD4 or CD8 determines the function of the T cell. CD4 is found on helper T cells, where it is required for the binding of MHC (major histocompatibility complex) class II molecules, while CD8 is found on cytotoxic T cells, where it is required for the binding of MHC class I molecules. CD4 contains four immunoglobulin domains, with the first three included in this hierarchy. The fourth domain has a general Ig architecture, but has slight topological changes in the arrangement of beta strands relative to the other structures in this family and is not specifically included in the hierarchy.
Probab=94.93 E-value=0.044 Score=35.42 Aligned_cols=29 Identities=10% Similarity=0.358 Sum_probs=22.0
Q ss_pred EEeecCCeEEEeeecCCCCCCCCceEEEeeecc
Q psy531 43 ITALLGESVVFNCGVDFPGDTPVPYVLQWEKKI 75 (80)
Q Consensus 43 ltA~vGe~VVlnCdvdfP~~~PiPYVvqW~KdG 75 (80)
+.|++|+.|.|.|... +.+.|+ ++|.|++
T Consensus 2 v~~~~G~~VtL~C~~s---~~~~~~-i~W~~~~ 30 (94)
T cd07690 2 VLGKKGDTAELPCTAS---QKKSIQ-FHWKNSN 30 (94)
T ss_pred eEeeCCCCEEEEEEeC---CCCCcE-EEEEECC
Confidence 5799999999999754 455554 6798665
No 67
>cd05743 Ig_Perlecan_D2_like Immunoglobulin (Ig)-like domain II (D2) of the human basement membrane heparan sulfate proteoglycan perlecan, also known as HSPG2. Ig_Perlecan_D2_like: the immunoglobulin (Ig)-like domain II (D2) of the human basement membrane heparan sulfate proteoglycan perlecan, also known as HSPG2. Perlecan consists of five domains. Domain I has three putative heparan sulfate attachment sites; domain II has four LDL receptor-like repeats, and one Ig-like repeat; domain III resembles the short arm of laminin chains; domain IV has multiple Ig-like repeats (21 repeats in human perlecan); and domain V resembles the globular G domain of the laminin A chain and internal repeats of EGF. Perlecan may participate in a variety of biological functions including cell binding, LDL-metabolism, basement membrane assembly and selective permeability, calcium binding, and growth- and neurite-promoting activities.
Probab=94.85 E-value=0.03 Score=33.34 Aligned_cols=26 Identities=31% Similarity=0.765 Sum_probs=20.8
Q ss_pred CCeEEEeeecCCCCCCCCceEEEeeecccc
Q psy531 48 GESVVFNCGVDFPGDTPVPYVLQWEKKIVK 77 (80)
Q Consensus 48 Ge~VVlnCdvdfP~~~PiPYVvqW~KdG~~ 77 (80)
|+.|.|.|.+. +.|.| .++|.|++..
T Consensus 1 G~~v~l~C~~~---g~P~p-~v~W~~~~~~ 26 (78)
T cd05743 1 GETVEFTCVAT---GVPTP-IINWRLNWGH 26 (78)
T ss_pred CCEEEEEEEEE---EecCC-EEEEEECCeE
Confidence 89999999874 77766 5889998653
No 68
>cd05869 Ig5_NCAM-1 Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). Ig5_NCAM-1: The fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM) and heterophilic (NCAM-non-NCAM) interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the surface of opposing cells (tr
Probab=94.75 E-value=0.044 Score=33.86 Aligned_cols=29 Identities=21% Similarity=0.617 Sum_probs=23.4
Q ss_pred eecCCeEEEeeecCCCCCCCCceEEEeeecccc
Q psy531 45 ALLGESVVFNCGVDFPGDTPVPYVLQWEKKIVK 77 (80)
Q Consensus 45 A~vGe~VVlnCdvdfP~~~PiPYVvqW~KdG~~ 77 (80)
++.|+.+.|.|.+. |.|.| .++|.|++.+
T Consensus 14 ~~~g~~v~l~C~~~---G~P~P-~v~W~~~~~~ 42 (97)
T cd05869 14 MELEEQITLTCEAS---GDPIP-SITWRTSTRN 42 (97)
T ss_pred EEcCCCEEEEEEee---EeCCC-EEEEEECCcc
Confidence 56789999999976 66777 4899998754
No 69
>cd05726 Ig4_Robo Fhird immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Ig4_Robo: domain similar to the fhird immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antagoni
Probab=94.74 E-value=0.047 Score=33.17 Aligned_cols=26 Identities=31% Similarity=0.742 Sum_probs=20.6
Q ss_pred CCeEEEeeecCCCCCCCCceEEEeeecccc
Q psy531 48 GESVVFNCGVDFPGDTPVPYVLQWEKKIVK 77 (80)
Q Consensus 48 Ge~VVlnCdvdfP~~~PiPYVvqW~KdG~~ 77 (80)
|+.|.|.|.+ .+.|.|. +.|.|+|..
T Consensus 1 G~~v~L~C~~---~g~P~p~-v~W~k~g~~ 26 (90)
T cd05726 1 GRTVTFQCEA---TGNPQPA-IFWQKEGSQ 26 (90)
T ss_pred CCEEEEEEEC---CccCCCE-EEEEeCCCc
Confidence 8999999976 4667775 679999853
No 70
>cd05756 Ig1_IL1R_like First immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R) and similar proteins. Ig1_IL1R_like: domain similar to the first immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R). IL-1 alpha and IL-1 beta are cytokines which participate in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds a second receptor designated type II (IL1R2). Mature IL1R1 consists of three Ig-like domains, a transmembrane domain, and a large cytoplasmic domain. Mature IL1R2 is organized similarly except that it has a short cytoplasmic domain. The latter does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of IL-1 alpha and IL-1 beta.
Probab=94.62 E-value=0.071 Score=33.74 Aligned_cols=35 Identities=31% Similarity=0.434 Sum_probs=24.3
Q ss_pred eEEeecCCeEEEeeecCCC-CC-CCCceEEEeeecccc
Q psy531 42 HITALLGESVVFNCGVDFP-GD-TPVPYVLQWEKKIVK 77 (80)
Q Consensus 42 ~ltA~vGe~VVlnCdvdfP-~~-~PiPYVvqW~KdG~~ 77 (80)
...+..||.|.|.|.+.=. .. .| .+-|.|.|+|.+
T Consensus 8 ~~~v~~G~~~~L~C~~~g~~~~~~p-~~~v~Wyk~~~~ 44 (94)
T cd05756 8 KSYVLEGEPVVIKCPLFYSYIAQSP-GLNLTWYKSDGK 44 (94)
T ss_pred EEEEecCCCeEEECCCCCcccccCC-CceEEEEEcCCC
Confidence 4457789999999985521 01 34 445999999864
No 71
>cd05853 Ig6_Contactin-4 Sixth Ig domain of contactin-4. Ig6_Contactin-4: sixth Ig domain of the neural cell adhesion molecule contactin-4. Contactins are neural cell adhesion molecules, and are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The different contactins show different expression patterns in the central nervous system. Highest expresson of contactin-4 is in testes, thyroid, small intestine, uterus and brain. Contactin-4 plays a role in the response of neuroblastoma cells to differentiating agents, such as retinoids. The contactin 4 gene is associated with cerebellar degeneration in spinocerebellar ataxia type 16.
Probab=94.59 E-value=0.046 Score=34.86 Aligned_cols=28 Identities=21% Similarity=0.248 Sum_probs=21.4
Q ss_pred CeEEEeeecCCCCCCCCceEEEeeeccccc
Q psy531 49 ESVVFNCGVDFPGDTPVPYVLQWEKKIVKN 78 (80)
Q Consensus 49 e~VVlnCdvdfP~~~PiPYVvqW~KdG~~~ 78 (80)
|+|+|.|.+.+..+- .++ +.|.|+|++-
T Consensus 1 ~~~~l~C~v~~d~~l-~~~-~~W~~dg~~i 28 (85)
T cd05853 1 ESIVLPCQVSHDHSL-DIV-FTWSFNGHLI 28 (85)
T ss_pred CcEEEEEEeccCCCC-CcE-EEEEECCEEC
Confidence 689999999985333 345 6999999754
No 72
>cd05735 Ig8_DSCAM Eight immunoglobulin (Ig) domain of Down Syndrome Cell Adhesion molecule (DSCAM). Ig8_DSCAM: the eight immunoglobulin (Ig) domain of Down Syndrome Cell Adhesion molecule (DSCAM). DSCAM is a cell adhesion molecule expressed largely in the developing nervous system. The gene encoding DSCAM is located at human chromosome 21q22, the locus associated with the mental retardation phenotype of Down Syndrome. DSCAM is predicted to be the largest member of the IG superfamily. It has been demonstrated that DSCAM can mediate cation-independent homophilic intercellular adhesion.
Probab=94.55 E-value=0.053 Score=33.44 Aligned_cols=26 Identities=23% Similarity=0.580 Sum_probs=21.3
Q ss_pred CCeEEEeeecCCCCCCCCceEEEeeecccc
Q psy531 48 GESVVFNCGVDFPGDTPVPYVLQWEKKIVK 77 (80)
Q Consensus 48 Ge~VVlnCdvdfP~~~PiPYVvqW~KdG~~ 77 (80)
||.|.|.|.+. |.| |-.+.|.|++..
T Consensus 1 g~~~~l~C~~~---g~p-~~~i~W~k~~~~ 26 (88)
T cd05735 1 GQKKEMSCTAH---GEK-PIIVRWEKEDRI 26 (88)
T ss_pred CCeEEEEEEEE---CCC-CCEEEEeeCCEE
Confidence 89999999987 554 558999999854
No 73
>cd05868 Ig4_NrCAM Fourth immunoglobulin (Ig)-like domain of NrCAM (NgCAM-related cell adhesion molecule). Ig4_ NrCAM: fourth immunoglobulin (Ig)-like domain of NrCAM (NgCAM-related cell adhesion molecule). NrCAM belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six IG-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. NrCAM is primarily expressed in the nervous system.
Probab=94.42 E-value=0.04 Score=32.94 Aligned_cols=26 Identities=27% Similarity=0.592 Sum_probs=22.0
Q ss_pred CCeEEEeeecCCCCCCCCceEEEeeecccc
Q psy531 48 GESVVFNCGVDFPGDTPVPYVLQWEKKIVK 77 (80)
Q Consensus 48 Ge~VVlnCdvdfP~~~PiPYVvqW~KdG~~ 77 (80)
|+.|.|.|.+. |.|.| -+.|.|+|.+
T Consensus 1 g~~~~l~C~a~---G~P~P-~i~W~k~g~~ 26 (76)
T cd05868 1 GEDGTLICRAN---GNPKP-SISWLTNGVP 26 (76)
T ss_pred CCCEEEEEEee---EeCCC-eEEEEECCEE
Confidence 88999999984 77776 5999999875
No 74
>cd05714 Ig_CSPGs_LP Immunoglobulin (Ig)-like domain of chondroitin sulfate proteoglycans (CSPGs), human cartilage link protein (LP) and similar proteins. Ig_CSPGs_LP: immunoglobulin (Ig)-like domain similar to that found in chondroitin sulfate proteoglycans (CSPGs) and human cartilage link protein (LP). Included in this group are the CSPGs aggrecan, versican, and neurocan. In CSPGs this Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, aggrecan forms cartilage link protein stabilized aggregates with hyaluronan (HA). These aggregates contribute to the tissue's load bearing properties. Aggrecan and versican have a wide distribution in connective tissue and extracellular matrices. Neurocan is localized almost exclusively in nervous tissue.
Probab=94.36 E-value=0.051 Score=33.82 Aligned_cols=29 Identities=24% Similarity=0.485 Sum_probs=22.3
Q ss_pred cCCeEEEeeecCCCCC--CCCceEEEeeecc
Q psy531 47 LGESVVFNCGVDFPGD--TPVPYVLQWEKKI 75 (80)
Q Consensus 47 vGe~VVlnCdvdfP~~--~PiPYVvqW~KdG 75 (80)
.|+.|.|.|.+..+.. ..-.+-|+|.|..
T Consensus 1 ~G~~V~L~C~~~~~~~~~~~~~~~i~W~k~~ 31 (106)
T cd05714 1 LGGNVTLPCRFHLEPALSAPHGPRIKWTKLE 31 (106)
T ss_pred CCCCEEEeEEeECCcccCCCCCcEEEEEEeC
Confidence 4999999999886532 2346789999984
No 75
>cd05861 Ig1_PDGFR-alphabeta Frst immunoglobulin (Ig)-like domain of platelet-derived growth factor (PDGF) receptors (R), alpha (CD140a), and beta (CD140b). Ig1_PDGFR-alphabeta: The first immunoglobulin (Ig)-like domain of platelet-derived growth factor (PDGF) receptors (R), alpha (CD140a), and beta (CD140b). PDGF is a potent mitogen for connective tissue cells. PDGF-stimulated processes are mediated by three different PDGFs (PDGF-A,-B, and C). PDGFRalpha binds to all three PDGFs, whereas the PDGFRbeta binds only to PDGF-B. PDGFRs alpha and beta have similar organization: an extracellular component with five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. In mice, PDGFRalpha and PDGFRbeta are essential for normal development.
Probab=94.35 E-value=0.057 Score=33.05 Aligned_cols=26 Identities=27% Similarity=0.480 Sum_probs=19.7
Q ss_pred CCeEEEeeecCCCCCCCCceEEEeeecccc
Q psy531 48 GESVVFNCGVDFPGDTPVPYVLQWEKKIVK 77 (80)
Q Consensus 48 Ge~VVlnCdvdfP~~~PiPYVvqW~KdG~~ 77 (80)
||++.|+|.+. +.|. +-++|.+.|.+
T Consensus 1 Ge~~~l~C~~~---~~~~-~~~~W~~~~~~ 26 (84)
T cd05861 1 GETITVNCIVQ---GNEV-VDFSWTYPGKD 26 (84)
T ss_pred CCcEEEEEEEE---CCCc-cEEEEEECCcc
Confidence 89999999984 4455 44899987653
No 76
>cd05760 Ig2_PTK7 Second immunoglobulin (Ig)-like domain of protein tyrosine kinase (PTK) 7, also known as CCK4. Ig2_PTK7: domain similar to the second immunoglobulin (Ig)-like domain in protein tyrosine kinase (PTK) 7, also known as CCK4. PTK7 is a subfamily of the receptor protein tyrosine kinase family, and is referred to as an RPTK-like molecule. RPTKs transduce extracellular signals across the cell membrane, and play important roles in regulating cell proliferation, migration, and differentiation. PTK7 is organized as an extracellular portion having seven Ig-like domains, a single transmembrane region, and a cytoplasmic tyrosine kinase-like domain. PTK7 is considered a pseudokinase as it has several unusual residues in some of the highly conserved tyrosine kinase (TK) motifs; it is predicted to lack TK activity. PTK7 may function as a cell-adhesion molecule. PTK7 mRNA is expressed at high levels in placenta, melanocytes, liver, lung, pancreas, and kidney. PTK7 is overexpressed in s
Probab=94.29 E-value=0.032 Score=33.35 Aligned_cols=23 Identities=30% Similarity=0.691 Sum_probs=18.6
Q ss_pred EEEeeecCCCCCCCCceEEEeeecccc
Q psy531 51 VVFNCGVDFPGDTPVPYVLQWEKKIVK 77 (80)
Q Consensus 51 VVlnCdvdfP~~~PiPYVvqW~KdG~~ 77 (80)
|.|.|.++ |.|.| .++|.|+|.+
T Consensus 1 v~L~C~~~---g~P~p-~v~W~k~g~~ 23 (77)
T cd05760 1 VTLRCHID---GHPRP-TYQWFRDGTP 23 (77)
T ss_pred CEEEEEee---ecCCC-cEEEEECCEE
Confidence 57999775 77877 6999999875
No 77
>cd05849 Ig1_Contactin-1 First Ig domain of contactin-1. Ig1_Contactin-1: First Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may, through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma.
Probab=94.19 E-value=0.077 Score=33.33 Aligned_cols=29 Identities=24% Similarity=0.574 Sum_probs=23.6
Q ss_pred eecCCeEEEeeecCCCCCCCCceEEEeeecccc
Q psy531 45 ALLGESVVFNCGVDFPGDTPVPYVLQWEKKIVK 77 (80)
Q Consensus 45 A~vGe~VVlnCdvdfP~~~PiPYVvqW~KdG~~ 77 (80)
+..|+.|.|.|.+. |.|.| .+.|.|+|.+
T Consensus 16 ~~~~~~v~l~C~a~---G~P~P-~i~W~k~~~~ 44 (93)
T cd05849 16 ESTEGKVSVNCRAR---ANPFP-IYKWRKNNLD 44 (93)
T ss_pred CccCCeEEEeCcCc---cCCCC-EEEEEECCEE
Confidence 44577999999984 77888 6999999865
No 78
>cd05872 Ig_Sema4B_like Immunoglobulin (Ig)-like domain of the class IV semaphorin Sema4B. Ig_Sema4B_like; Immunoglobulin (Ig)-like domain of Sema4B_like. Sema4B is a Class IV semaphorin. Semaphorins are classified based on structural features additional to the Sema domain. Sema4B has extracellular Sema and Ig domains, a transmembrane domain and a short cytoplasmic domain. Sema4B has been shown to preferentially regulate the development of the postsynaptic specialization at the glutamatergic synapses. This cytoplasmic domain includes a PDZ-binding motif upon which the synaptic localization of Sem4B is dependent. Sema4B is a ligand of CLCP1, CLCP1 was identified in an expression profiling analysis, which compared a highly metastic lung cancer subline with its low metastic parental line. Sema4B was shown to promote CLCP1 endocytosis, and their interaction is a potential target for therapeutic intervention of metastasis.
Probab=94.18 E-value=0.082 Score=34.01 Aligned_cols=32 Identities=19% Similarity=0.172 Sum_probs=27.7
Q ss_pred ceEEeecCCeEEEeeecCCCCCCCCceEEEeeecccc
Q psy531 41 VHITALLGESVVFNCGVDFPGDTPVPYVLQWEKKIVK 77 (80)
Q Consensus 41 ~~ltA~vGe~VVlnCdvdfP~~~PiPYVvqW~KdG~~ 77 (80)
..++...|++|+|.|....+.-+ +.|.++|.+
T Consensus 4 ~~~tv~~g~~v~L~C~~~s~~A~-----v~W~~ng~~ 35 (85)
T cd05872 4 KNRTVAPGADVVLPCQLRSNLAS-----PVWLFNGTP 35 (85)
T ss_pred eEEEEecCCCEEEECCCCCCCcc-----EEEEECCcc
Confidence 56889999999999999988655 999999875
No 79
>cd05746 Ig4_Peroxidasin Fourth immunoglobulin (Ig)-like domain of peroxidasin. Ig4_Peroxidasin: the fourth immunoglobulin (Ig)-like domain in peroxidasin. Peroxidasin has a peroxidase domain and interacting extracellular motifs containing four Ig-like domains. It has been suggested that peroxidasin is secreted, and has functions related to the stabilization of the extracellular matrix. It may play a part in various other important processes such as removal and destruction of cells, which have undergone programmed cell death, and protection of the organism against non-self.
Probab=94.16 E-value=0.035 Score=32.31 Aligned_cols=23 Identities=30% Similarity=0.702 Sum_probs=18.7
Q ss_pred EEEeeecCCCCCCCCceEEEeeecccc
Q psy531 51 VVFNCGVDFPGDTPVPYVLQWEKKIVK 77 (80)
Q Consensus 51 VVlnCdvdfP~~~PiPYVvqW~KdG~~ 77 (80)
|.|.|.+. |.|.|. ++|.|+|.+
T Consensus 1 v~L~C~~~---g~P~p~-i~W~k~g~~ 23 (69)
T cd05746 1 VQIPCSAQ---GDPEPT-ITWNKDGVQ 23 (69)
T ss_pred CEeEecce---EeCCCE-EEEEECCEE
Confidence 56889875 788886 899999865
No 80
>PHA02785 IL-beta-binding protein; Provisional
Probab=94.10 E-value=0.076 Score=40.25 Aligned_cols=38 Identities=16% Similarity=0.261 Sum_probs=28.6
Q ss_pred CCcceEEeecCCeEEEeeecC-CCCCCCCceEEEeeecccc
Q psy531 38 SNAVHITALLGESVVFNCGVD-FPGDTPVPYVLQWEKKIVK 77 (80)
Q Consensus 38 ~~P~~ltA~vGe~VVlnCdvd-fP~~~PiPYVvqW~KdG~~ 77 (80)
+.|+.+++..|+.|.|.|.+. +|... -| .+.|.|+|.+
T Consensus 225 ~~p~~~~~~~G~~v~L~C~a~g~P~~~-~~-~v~W~kng~~ 263 (326)
T PHA02785 225 QLPEGVVTSIGSNLTIACRVSLRPPTT-DA-DVFWISNGMY 263 (326)
T ss_pred cCCCcEEecCCCcEEEEEEEECCCCCC-Cc-eEEEEECCEE
Confidence 356677888999999999998 45321 13 5899999863
No 81
>PHA03376 BARF1; Provisional
Probab=94.08 E-value=0.11 Score=40.09 Aligned_cols=33 Identities=24% Similarity=0.211 Sum_probs=26.4
Q ss_pred eEEeecCCeEEEeeecC-CCCCCCCceEEEeeeccc
Q psy531 42 HITALLGESVVFNCGVD-FPGDTPVPYVLQWEKKIV 76 (80)
Q Consensus 42 ~ltA~vGe~VVlnCdvd-fP~~~PiPYVvqW~KdG~ 76 (80)
-++|++||.|+|.|+.. ...+ .=-.|.|.|++.
T Consensus 20 pVta~VGEda~LsC~lnp~ssa--~~MrIrWqKs~p 53 (221)
T PHA03376 20 AVTAFLGERVTLTSYWRRVSLG--PEIEVSWFKLGP 53 (221)
T ss_pred chhheeCCcEEEEecccCccCC--CceEEEEEecCC
Confidence 57899999999999998 4443 336799999764
No 82
>cd05773 Ig8_hNephrin_like Eighth immunoglobulin-like domain of nephrin. Ig8_hNephrin_like: domain similar to the eighth immunoglobulin-like domain in human nephrin. Nephrin is an integral component of the slit diaphragm, and is a central component of the glomerular ultrafilter. Nephrin plays a structural role, and has a role in signaling. Nephrin is a transmembrane protein having a short intracellular portion, and an extracellular portion comprised of eight Ig-like domains, and one fibronectin type III-like domain. The extracellular portions of nephrin, from neighboring foot processes of separate podocyte cells, may interact with each other, and in association with other components of the slit diaphragm, form a porous molecular sieve within the slit pore. The intracellular portion of nephrin is associated with linker proteins, which connect nephrin to the actin cytoskeleton. The intracellular portion is tyrosine phosphorylated, and mediates signaling from the slit diaphragm into the p
Probab=94.05 E-value=0.077 Score=34.10 Aligned_cols=28 Identities=18% Similarity=0.291 Sum_probs=23.6
Q ss_pred ecCCeEEEeeecCCCCCCCCceEEEeeecccc
Q psy531 46 LLGESVVFNCGVDFPGDTPVPYVLQWEKKIVK 77 (80)
Q Consensus 46 ~vGe~VVlnCdvdfP~~~PiPYVvqW~KdG~~ 77 (80)
..|+.|.|.|.+. |.|.| .+.|.|+|.+
T Consensus 21 ~~g~~v~L~C~a~---G~P~p-~i~W~k~g~~ 48 (109)
T cd05773 21 DGSSDANLVCQAQ---GVPRV-QFRWAKNGVP 48 (109)
T ss_pred CCCCEEEEEEECc---ccCCC-EEEEEECCEE
Confidence 4678999999996 78877 7999999864
No 83
>smart00408 IGc2 Immunoglobulin C-2 Type.
Probab=94.02 E-value=0.094 Score=27.35 Aligned_cols=27 Identities=30% Similarity=0.534 Sum_probs=19.2
Q ss_pred cCCeEEEeeecCCCCCCCCceEEEeeecccc
Q psy531 47 LGESVVFNCGVDFPGDTPVPYVLQWEKKIVK 77 (80)
Q Consensus 47 vGe~VVlnCdvdfP~~~PiPYVvqW~KdG~~ 77 (80)
.|+.|.|.|.+. +.|. .-+.|.|+|..
T Consensus 1 ~g~~~~l~C~~~---~~~~-~~v~W~~~~~~ 27 (63)
T smart00408 1 EGQSVTLTCPAE---GDPV-PNITWLKDGKP 27 (63)
T ss_pred CCceEEEEeeCc---cCCC-CeEEEEECCEE
Confidence 489999999943 3333 35899998754
No 84
>cd05871 Ig_Semaphorin_classIII Immunoglobulin (Ig)-like domain of class III semaphorin. Ig_Semaphorin_class III; Immunoglobulin (Ig)-like domain of class III semaphorins. Semaphorins are classified into various classes on the basis of structural features additional to the Sema domain. Class III semaphorins are a vertebrate class having a Sema domain, an Ig domain, a short basic domain, and are secreted. They have been shown to be axonal guidance cues and have a part in the regulation of the cardiovascular, immune and respiratory systems. Sema3A, the prototype member of this class III subfamily, induces growth cone collapse and is an inhibitor of axonal sprouting. In perinatal rat cortex as a chemoattractant, it functions to direct, for pyramidal neurons, the orientated extension of apical dendrites. It may play a role, prior to the development of apical dendrites, in signaling the radial migration of newborn cortical neurons towards the upper layers. Sema3A selectively inhibits vascula
Probab=93.86 E-value=0.1 Score=32.87 Aligned_cols=29 Identities=14% Similarity=0.318 Sum_probs=21.8
Q ss_pred eEEeecCCeEEEeeecCCCCCCCCceEEEeeecc
Q psy531 42 HITALLGESVVFNCGVDFPGDTPVPYVLQWEKKI 75 (80)
Q Consensus 42 ~ltA~vGe~VVlnCdvdfP~~~PiPYVvqW~KdG 75 (80)
.+++..|++|.|.|... .|.|+ ++|.|++
T Consensus 5 ~~~~~eG~~v~L~C~~~----~p~p~-v~Wykq~ 33 (91)
T cd05871 5 VVYGVENNSTFLECLPK----SPQAS-VKWLFQR 33 (91)
T ss_pred EEEEecCCcEEEEEECC----CCCce-EEEEEEC
Confidence 34588999999999943 44555 7999853
No 85
>cd04970 Ig6_Contactin_like Sixth Ig domain of contactin. Ig6_Contactin_like: Sixth Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week
Probab=93.86 E-value=0.067 Score=32.07 Aligned_cols=26 Identities=23% Similarity=0.480 Sum_probs=19.6
Q ss_pred CeEEEeeecCCCCCCCCce-EEEeeecccc
Q psy531 49 ESVVFNCGVDFPGDTPVPY-VLQWEKKIVK 77 (80)
Q Consensus 49 e~VVlnCdvdfP~~~PiPY-VvqW~KdG~~ 77 (80)
|+|.|.|.+. +.|.|- -+.|.|+|.+
T Consensus 1 e~~~L~C~~~---g~P~p~i~~~W~~~g~~ 27 (85)
T cd04970 1 ESITLQCHAS---HDPTLDLTFTWSFNGVP 27 (85)
T ss_pred CcEEEEEEEe---cCCCCCeEEEEEECCeE
Confidence 6799999996 445553 3799999875
No 86
>cd05845 Ig2_L1-CAM_like Second immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM) and similar proteins. Ig2_L1-CAM_like: domain similar to the second immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains, five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth.
Probab=93.65 E-value=0.16 Score=33.43 Aligned_cols=38 Identities=18% Similarity=0.282 Sum_probs=29.2
Q ss_pred CCCcceEEeecCCeEEEeeecCCCCCCCCceEEEeeecccc
Q psy531 37 ISNAVHITALLGESVVFNCGVDFPGDTPVPYVLQWEKKIVK 77 (80)
Q Consensus 37 ~~~P~~ltA~vGe~VVlnCdvdfP~~~PiPYVvqW~KdG~~ 77 (80)
.++++.+++..|+.++|.|+. |.+.|-|- +.|.+++..
T Consensus 7 ~~~~~~v~V~eG~~~~L~C~p--P~g~P~P~-i~W~~~~~~ 44 (95)
T cd05845 7 KEKIRPVEVEEGDSVVLPCNP--PKSAVPLR-IYWMNSDLL 44 (95)
T ss_pred ccccceeEEecCCCEEEEecC--CCCCCCCE-EEEECCCCc
Confidence 355677889999999999975 66776665 699987643
No 87
>PHA02982 hypothetical protein; Provisional
Probab=93.55 E-value=0.09 Score=41.25 Aligned_cols=59 Identities=15% Similarity=0.380 Sum_probs=42.2
Q ss_pred chhHHHHHHHHHHHHhhccCCCCCCCCcceEEeecCCeEEEeeecCCCCCCCCceEEEeeec
Q psy531 13 NLHHISLQVLLIITLVHFKGVSPDISNAVHITALLGESVVFNCGVDFPGDTPVPYVLQWEKK 74 (80)
Q Consensus 13 ~~~~~~~~~ll~i~l~~~sg~~g~~~~P~~ltA~vGe~VVlnCdvdfP~~~PiPYVvqW~Kd 74 (80)
|+--|+++.++.+-|.+.-+---+.+|--.+.|.||++|.|+|. ||....|-. .-|.++
T Consensus 4 n~~~~~i~i~~~~~~~~~y~e~~~~~d~~dv~a~vd~~V~L~C~--~~~~~~i~~-~~W~~~ 62 (251)
T PHA02982 4 NLFTIAIAIIIFFGLINIYDEEDLKEDTADVNATVDQEVKLQCL--FKDADEISR-AMWKGD 62 (251)
T ss_pred hhhhHHHHHHHHhhhhhccCchhcccchhhhhccCCCcEEEEec--CCCcchhhh-heeeCC
Confidence 56667777766565655555544566667788999999999999 997666644 458775
No 88
>cd05896 Ig1_IL1RAPL-1_like First immunoglobulin (Ig)-like domain of X-linked interleukin-1 receptor accessory protein-like 1 (IL1RAPL-1). Ig1_ IL1RAPL-1_like: domain similar to the first immunoglobulin (Ig)-like domain of X-linked interleukin-1 receptor accessory protein-like 1 (IL1RAPL-1). IL-1 alpha and IL-1 beta are cytokines which participates in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds a second receptor designated type II (IL1R2). Mature IL1R1 consists of three Ig-like domains, a transmembrane domain, and a large cytoplasmic domain. Mature IL1R2 is organized similarly except that it has a short cytoplasmic domain. The latter does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of
Probab=93.50 E-value=0.17 Score=34.47 Aligned_cols=37 Identities=22% Similarity=0.329 Sum_probs=26.8
Q ss_pred ceEEeecCCeEEEeeecC-------CCCCCCCceEEEeeecccc
Q psy531 41 VHITALLGESVVFNCGVD-------FPGDTPVPYVLQWEKKIVK 77 (80)
Q Consensus 41 ~~ltA~vGe~VVlnCdvd-------fP~~~PiPYVvqW~KdG~~ 77 (80)
+.+.+..||.|+|+|.+- |+..+-...-|-|.|+|.+
T Consensus 8 ~~~~~~~GE~v~l~C~~~~~~~~~~~~~~~~~~~~v~WyK~~~~ 51 (104)
T cd05896 8 KKYMVLAGEPVRIKCALFYGYIRTNYSMAQSAGLSLMWYKSSGD 51 (104)
T ss_pred eeEEEcCCCeEEEECCCccccccccccccccCCceEEEEECCCC
Confidence 456789999999999972 3333334457999999744
No 89
>cd05881 Ig1_Necl-2 First (N-terminal) immunoglobulin (Ig)-like domain of nectin-like molecule 2 (also known as cell adhesion molecule 1 (CADM1)). Ig1_Necl-2: domain similar to the N-terminal immunoglobulin (Ig)-like domain of nectin-like molecule-2, Necl-2 (also known as cell adhesion molecule 1 (CADM1), SynCAM1, IGSF4A, Tslc1, sgIGSF, and RA175). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region, belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-2 has Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-2 is expressed in a wide variety of tissues, and is a
Probab=93.50 E-value=0.12 Score=33.77 Aligned_cols=31 Identities=26% Similarity=0.363 Sum_probs=25.2
Q ss_pred ceEEeecCCeEEEeeecCCCCCCCCceEEEeeecc
Q psy531 41 VHITALLGESVVFNCGVDFPGDTPVPYVLQWEKKI 75 (80)
Q Consensus 41 ~~ltA~vGe~VVlnCdvdfP~~~PiPYVvqW~KdG 75 (80)
+.+++..|++|.|+|.++...+ |.++|-|-|
T Consensus 5 ~nvtv~~G~ta~L~C~v~~~~~----~~v~w~~~~ 35 (95)
T cd05881 5 EDVTVVEGEVAIISCRVKNNDD----SVIQLLNPN 35 (95)
T ss_pred CceEEcCCCcEEEEEEEccCCc----cEEEEEecC
Confidence 4588999999999999998742 557887665
No 90
>cd05713 Ig_MOG_like Immunoglobulin (Ig)-like domain of myelin oligodendrocyte glycoprotein (MOG). Ig_MOG_like: immunoglobulin (Ig)-like domain of myelin oligodendrocyte glycoprotein (MOG). MOG, a minor component of the myelin sheath, is an important CNS-specific autoantigen, linked to the pathogenesis of multiple sclerosis (MS) and experimental autoimmune encephalomyelitis (EAE). It is a transmembrane protein having an extracellular Ig domain. MOG is expressed in the CNS on the outermost lamellae of the myelin sheath, and on the surface of oligodendrocytes, and may participate in the completion, compaction, and/or maintenance of myelin. This group also includes butyrophilin (BTN). BTN is the most abundant protein in bovine milk-fat globule membrane (MFGM).
Probab=93.39 E-value=0.12 Score=31.60 Aligned_cols=27 Identities=15% Similarity=0.319 Sum_probs=19.7
Q ss_pred CCeEEEeeecCCCCCCCCceEEEeeecc
Q psy531 48 GESVVFNCGVDFPGDTPVPYVLQWEKKI 75 (80)
Q Consensus 48 Ge~VVlnCdvdfP~~~PiPYVvqW~KdG 75 (80)
|+.|.|.|.+.-+. ..-.+-+.|.|..
T Consensus 1 G~~v~L~C~~~~~~-~~~~~~v~W~k~~ 27 (100)
T cd05713 1 GEDAELPCHLSPKM-SAEHMEVRWFRSQ 27 (100)
T ss_pred CCcEEEEeEEcCCC-CCCeeEEEEEECC
Confidence 89999999996432 3344568898864
No 91
>cd05757 Ig2_IL1R_like Second immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R) and similar proteins. Ig2_IL1R_like: domain similar to the second immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R). IL-1 alpha and IL-1 beta are cytokines which participate in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds a second receptor designated type II (IL1R2). Mature IL1R1 consists of three IG-like domains, a transmembrane domain, and a large cytoplasmic domain. Mature IL1R2 is organized similarly except that it has a short cytoplasmic domain. The latter does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of IL-1 alpha and IL-1 beta. This group also contains ILIR-like 1 (IL1
Probab=93.27 E-value=0.12 Score=32.78 Aligned_cols=34 Identities=21% Similarity=0.318 Sum_probs=24.3
Q ss_pred EeecCCeEEEeeec--CCCCCCCCceEEEeeeccccc
Q psy531 44 TALLGESVVFNCGV--DFPGDTPVPYVLQWEKKIVKN 78 (80)
Q Consensus 44 tA~vGe~VVlnCdv--dfP~~~PiPYVvqW~KdG~~~ 78 (80)
.+-.|+.+.|.|.. .|+...|.|. +.|.|+|.+-
T Consensus 6 ~~~~g~~~~l~Cp~~~~~~~~~~~p~-i~Wyk~~~~i 41 (92)
T cd05757 6 ILFSTKGGKIVCPDLDDFKNENTLPP-VQWYKDCKLL 41 (92)
T ss_pred EEeeccCCEEECCChHHccCCCCCCc-EEEeECCEEC
Confidence 37889999999976 3333334444 7999999764
No 92
>PHA02826 IL-1 receptor-like protein; Provisional
Probab=93.23 E-value=0.15 Score=37.44 Aligned_cols=36 Identities=14% Similarity=0.121 Sum_probs=26.8
Q ss_pred ceEEeecCCeEEEeeecC--CCCCCCCceEEEeeecccc
Q psy531 41 VHITALLGESVVFNCGVD--FPGDTPVPYVLQWEKKIVK 77 (80)
Q Consensus 41 ~~ltA~vGe~VVlnCdvd--fP~~~PiPYVvqW~KdG~~ 77 (80)
.......|+.|.|.|... +|.+.|.| -++|.|+|.+
T Consensus 137 ~~~~~~~G~~v~L~C~~~~~~~~~~p~p-~I~WyKng~~ 174 (227)
T PHA02826 137 INYQFNSGKDSKLHCYGTDGISSTFKDY-TLTWYKNGNI 174 (227)
T ss_pred ccceEecCCCEEEEeeCCCCccccCCCc-eEEEEECCEE
Confidence 345567899999999873 55455555 5899999975
No 93
>cd05718 Ig1_PVR_like First immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155) and similar proteins. Ig1_PVR_like: domain similar to the first immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155). Poliovirus (PV) binds to its cellular receptor (PVR/CD155) to initiate infection. CD155 is a membrane-anchored, single-span glycoprotein; its extracellular region has three Ig-like domains. There are four different isotypes of CD155 (referred to as alpha, beta, gamma, and delta), that result from alternate splicing of the CD155 mRNA, and have identical extracellular domains. CD155-beta and - gamma, are secreted, CD155-alpha and delta are membrane-bound and function as PV receptors. The virus recognition site is contained in the amino-terminal domain, D1. Having the virus attachment site on the receptor distal from the plasma membrane, may be important for successful initiation of infection of cells by the virus. CD155 binds in the poliovirus "c
Probab=93.18 E-value=0.1 Score=31.47 Aligned_cols=27 Identities=30% Similarity=0.481 Sum_probs=20.7
Q ss_pred CeEEEeeecCCCCCCCCceEEEeeeccc
Q psy531 49 ESVVFNCGVDFPGDTPVPYVLQWEKKIV 76 (80)
Q Consensus 49 e~VVlnCdvdfP~~~PiPYVvqW~KdG~ 76 (80)
|.|.|.|.+..+.+ ...+-|.|.|+..
T Consensus 1 ~~v~L~C~~~~~~~-~~~~~v~W~k~~~ 27 (98)
T cd05718 1 ESVTLECSFPVPGP-VQITQVTWMKITG 27 (98)
T ss_pred CCEEEEeEeeCCCC-ceEEEEEEeeECC
Confidence 67999999877643 3456899999864
No 94
>cd05753 Ig2_FcgammaR_like Second immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs) and similar proteins. Ig2_FcgammaR_like: domain similar to the second immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs). Interactions between IgG and FcgammaR are important to the initiation of cellular and humoral response. IgG binding to FcgammaR leads to a cascade of signals and ultimately to functions such as antibody-dependent-cellular-cytotoxicity (ADCC), endocytosis, phagocytosis, release of inflammatory mediators, etc. FcgammaR has two Ig-like domains. This group also contains FcepsilonRI, which binds IgE with high affinity.
Probab=93.12 E-value=0.16 Score=31.14 Aligned_cols=31 Identities=16% Similarity=0.194 Sum_probs=23.0
Q ss_pred EeecCCeEEEeeecCCCCCCCCceEEEeeecccc
Q psy531 44 TALLGESVVFNCGVDFPGDTPVPYVLQWEKKIVK 77 (80)
Q Consensus 44 tA~vGe~VVlnCdvdfP~~~PiPYVvqW~KdG~~ 77 (80)
+...||.|.|+|...- ...+.-+.|.|+|..
T Consensus 10 ~V~~G~~vtL~C~~~~---~~~~~~~~w~k~g~~ 40 (83)
T cd05753 10 VVFEGEPLVLRCHGWK---NKPVYKVTYYRDGKA 40 (83)
T ss_pred eecCCCCEEEEeeCCC---CCcceEEEEEECCeE
Confidence 4778999999999632 223356899999864
No 95
>cd05733 Ig6_L1-CAM_like Sixth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM) and similar proteins. Ig6_L1-CAM_like: domain similar to the sixth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains NrCAM [Ng(neuronglia)CAM-related cell adhesion molecule], which is primarily expressed in the nervous system, and human neurofascin.
Probab=92.68 E-value=0.11 Score=30.96 Aligned_cols=23 Identities=22% Similarity=0.690 Sum_probs=18.7
Q ss_pred EEEeeecCCCCCCCCceEEEeeecccc
Q psy531 51 VVFNCGVDFPGDTPVPYVLQWEKKIVK 77 (80)
Q Consensus 51 VVlnCdvdfP~~~PiPYVvqW~KdG~~ 77 (80)
|.|.|.+. |.|.|- +.|.|+|.+
T Consensus 1 i~l~C~~~---G~P~P~-v~W~k~g~~ 23 (77)
T cd05733 1 IVIKCEAK---GNPPPT-FSWTRNGTH 23 (77)
T ss_pred CEEEeeCc---ccCCCe-EEEEECCeE
Confidence 46889875 888886 999999865
No 96
>cd05725 Ig3_Robo Third immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Ig3_Robo: domain similar to the third immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antagoni
Probab=92.47 E-value=0.15 Score=29.35 Aligned_cols=23 Identities=39% Similarity=0.775 Sum_probs=17.7
Q ss_pred EEEeeecCCCCCCCCceEEEeeecccc
Q psy531 51 VVFNCGVDFPGDTPVPYVLQWEKKIVK 77 (80)
Q Consensus 51 VVlnCdvdfP~~~PiPYVvqW~KdG~~ 77 (80)
|.|.|.++ |.|.|. +.|.|++..
T Consensus 1 v~l~C~~~---g~P~p~-v~W~k~~~~ 23 (69)
T cd05725 1 VEFQCEVG---GDPVPT-VLWRKEDGE 23 (69)
T ss_pred CEEEEECc---cCCCCE-EEEEECCcc
Confidence 57899774 778775 899998653
No 97
>cd05723 Ig4_Neogenin Fourth immunoglobulin (Ig)-like domain in neogenin and similar proteins. Ig4_Neogenin: fourth immunoglobulin (Ig)-like domain in neogenin and related proteins. Neogenin is a cell surface protein which is expressed in the developing nervous system of vertebrate embryos in the growing nerve cells. It is also expressed in other embryonic tissues, and may play a general role in developmental processes such as cell migration, cell-cell recognition, and tissue growth regulation. Included in this group is the tumor suppressor protein DCC, which is deleted in colorectal carcinoma . DCC and neogenin each have four Ig-like domains followed by six fibronectin type III domains, a transmembrane domain, and an intracellular domain.
Probab=92.39 E-value=0.12 Score=30.28 Aligned_cols=24 Identities=33% Similarity=0.740 Sum_probs=19.1
Q ss_pred eEEEeeecCCCCCCCCceEEEeeecccc
Q psy531 50 SVVFNCGVDFPGDTPVPYVLQWEKKIVK 77 (80)
Q Consensus 50 ~VVlnCdvdfP~~~PiPYVvqW~KdG~~ 77 (80)
.|.|.|.++ |.|.|- +.|.|+|..
T Consensus 1 ~v~l~C~~~---G~P~p~-v~W~k~g~~ 24 (71)
T cd05723 1 DVIFECEVT---GKPTPT-VKWVKNGDM 24 (71)
T ss_pred CEEEEEEEE---EeCCCE-EEEEECCeE
Confidence 378999985 778774 799999864
No 98
>cd05875 Ig6_hNeurofascin_like Sixth immunoglobulin (Ig)-like domain of human neurofascin (NF). Ig6_hNeurofascin_like: the sixth immunoglobulin (Ig)-like domain of human neurofascin (NF). NF belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region, and a cytoplasmic domain. NF has many alternatively spliced isoforms having different temporal expression patterns during development. NF participates in axon subcellular targeting and synapse formation, however little is known of the functions of the different isoforms.
Probab=92.38 E-value=0.13 Score=31.04 Aligned_cols=23 Identities=26% Similarity=0.717 Sum_probs=18.9
Q ss_pred EEEeeecCCCCCCCCceEEEeeecccc
Q psy531 51 VVFNCGVDFPGDTPVPYVLQWEKKIVK 77 (80)
Q Consensus 51 VVlnCdvdfP~~~PiPYVvqW~KdG~~ 77 (80)
++|.|.++ |.|.|. ++|.|+|.+
T Consensus 1 ~~l~C~~~---G~P~P~-v~W~k~g~~ 23 (77)
T cd05875 1 IIIECEAK---GNPVPT-FQWTRNGKF 23 (77)
T ss_pred CEEEEecc---ccCCCE-EEEEECCEE
Confidence 47899886 888887 899999864
No 99
>cd05877 Ig_LP_like Immunoglobulin (Ig)-like domain of human cartilage link protein (LP). Ig_LP_like: immunoglobulin (Ig)-like domain similar to that that found in human cartilage link protein (LP). In cartilage, chondroitin-keratan sulfate proteoglycan (CSPG), aggrecan, forms cartilage link protein stabilized aggregates with hyaluronan (HA). These aggregates contribute to the tissue's load bearing properties. Aggregates having other CSPGs substituting for aggrecan may contribute to the structural integrity of many different tissues. Members of the vertebrate HPLN (hyaluronan/HA and proteoglycan binding link) protein family are physically linked adjacent to CSPG genes.
Probab=92.17 E-value=0.22 Score=30.83 Aligned_cols=29 Identities=21% Similarity=0.440 Sum_probs=21.5
Q ss_pred cCCeEEEeeecCCC-CCC-CCceEEEeeecc
Q psy531 47 LGESVVFNCGVDFP-GDT-PVPYVLQWEKKI 75 (80)
Q Consensus 47 vGe~VVlnCdvdfP-~~~-PiPYVvqW~KdG 75 (80)
.|+.|.|.|.+..+ ... +..+-|.|.|+.
T Consensus 1 ~G~~vtL~C~~~~~~~~~~~~~~~v~W~k~~ 31 (106)
T cd05877 1 RGGNVTLPCRYHYEPELSAPRKIRVKWTKLE 31 (106)
T ss_pred CCCcEEEEeEeECCCcCCCCccceEEEEEec
Confidence 49999999998754 222 345779999985
No 100
>cd04976 Ig2_VEGFR Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor (VEGFR). Ig2_VEGFR: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor (VEGFR). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-2 is a major mediator of the mitogenic, angiogenic and microvascular permeability-enhancing effects of VEGF-A. VEGFR-1 may play an inhibitory part in these processes by binding VEGF and interfering with its interaction with VEGFR-2. VEGFR-1 has a signa
Probab=92.12 E-value=0.1 Score=30.87 Aligned_cols=24 Identities=29% Similarity=0.331 Sum_probs=18.6
Q ss_pred EEEeeecCCCCCCCCceEEEeeeccccc
Q psy531 51 VVFNCGVDFPGDTPVPYVLQWEKKIVKN 78 (80)
Q Consensus 51 VVlnCdvdfP~~~PiPYVvqW~KdG~~~ 78 (80)
|.|.|.+. |.|.|- +.|.|+|.+-
T Consensus 1 ~~l~c~v~---g~P~p~-v~W~k~g~~l 24 (71)
T cd04976 1 VRLPVKVK---AYPPPE-IQWYKNGKLI 24 (71)
T ss_pred CEEEeEEE---EeCCCE-EEEEECCEEC
Confidence 56889875 777775 7999998753
No 101
>cd05764 Ig_2 Subgroup of the immunoglobulin (Ig) superfamily. Ig_2: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.
Probab=92.05 E-value=0.26 Score=28.43 Aligned_cols=25 Identities=20% Similarity=0.589 Sum_probs=19.3
Q ss_pred CCeEEEeeecCCCCCCCCceEEEeee-ccc
Q psy531 48 GESVVFNCGVDFPGDTPVPYVLQWEK-KIV 76 (80)
Q Consensus 48 Ge~VVlnCdvdfP~~~PiPYVvqW~K-dG~ 76 (80)
|+.|.|.|.+. +.|.| -+.|.| ++.
T Consensus 1 G~~~~l~C~~~---g~P~p-~v~W~~~~~~ 26 (74)
T cd05764 1 GQRATLRCKAR---GDPEP-AIHWISPDGK 26 (74)
T ss_pred CCeEEEEEEcc---CcCCC-EEEEEeCCCE
Confidence 89999999985 66665 689997 443
No 102
>cd05863 Ig2_VEGFR-3 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 3 (VEGFR-3). Ig2_VEGFR-3: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 3 (VEGFR-3). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-3 (Flt-4) binds two members of the VEGF family (VEGF-C and -D) and is involved in tumor angiogenesis and growth.
Probab=91.42 E-value=0.14 Score=31.12 Aligned_cols=24 Identities=29% Similarity=0.320 Sum_probs=18.1
Q ss_pred EEEeeecCCCCCCCCceEEEeeeccccc
Q psy531 51 VVFNCGVDFPGDTPVPYVLQWEKKIVKN 78 (80)
Q Consensus 51 VVlnCdvdfP~~~PiPYVvqW~KdG~~~ 78 (80)
|-|.|.+. |.|.| .++|.|+|++-
T Consensus 1 ~~l~c~v~---g~P~P-~v~W~kdg~~l 24 (67)
T cd05863 1 VKLPVKVA---AYPPP-EFQWYKDGKLI 24 (67)
T ss_pred CEEEEEEE---EeCCC-EEEEEECCEEC
Confidence 35778876 77777 49999999753
No 103
>cd04984 IgV_L_lambda Immunoglobulin (Ig) lambda light chain variable (V) domain. IgV_L_lambda: Immunoglobulin (Ig) light chain, lambda type, variable (V) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which seem to be functionally identical, and can associate with any of the heavy chains.
Probab=91.41 E-value=0.21 Score=30.70 Aligned_cols=31 Identities=16% Similarity=0.326 Sum_probs=21.6
Q ss_pred EEeecCCeEEEeeecCCCC-CCCCceEEEeeeccc
Q psy531 43 ITALLGESVVFNCGVDFPG-DTPVPYVLQWEKKIV 76 (80)
Q Consensus 43 ltA~vGe~VVlnCdvdfP~-~~PiPYVvqW~KdG~ 76 (80)
++++.|+.|.|+|.+.-.. +. +-++|.|+..
T Consensus 1 ~~v~~G~~v~l~C~~~~~~~~~---~~i~Wy~q~~ 32 (98)
T cd04984 1 LSVSPGETVTITCTGSSGNISG---NYVNWYQQKP 32 (98)
T ss_pred CccCCCCCEEEEEEEcCCCcCC---CCEEEEEECC
Confidence 4678999999999875331 22 3388988743
No 104
>cd05892 Ig_Myotilin_C C-terminal immunoglobulin (Ig)-like domain of myotilin. Ig_Myotilin_C: C-terminal immunoglobulin (Ig)-like domain of myotilin. Mytolin belongs to the palladin-myotilin-myopalladin family. Proteins belonging to the latter family contain multiple Ig-like domains and function as scaffolds, modulating actin cytoskeleton. Myotilin is most abundant in skeletal and cardiac muscle, and is involved in maintaining sarcomere integrity. It binds to alpha-actinin, filamin and actin. Mutations in myotilin lead to muscle disorders.
Probab=91.16 E-value=0.17 Score=30.87 Aligned_cols=23 Identities=22% Similarity=0.611 Sum_probs=18.3
Q ss_pred EEEeeecCCCCCCCCceEEEeeecccc
Q psy531 51 VVFNCGVDFPGDTPVPYVLQWEKKIVK 77 (80)
Q Consensus 51 VVlnCdvdfP~~~PiPYVvqW~KdG~~ 77 (80)
|.|.|.+. |.|.|. +.|.|+|..
T Consensus 1 v~l~C~v~---G~P~P~-i~W~k~~~~ 23 (75)
T cd05892 1 VKLECQIS---AIPPPK-IFWKRNNEM 23 (75)
T ss_pred CEEEEEEE---ecCCCe-EEEEECCEE
Confidence 57889874 778885 899999865
No 105
>cd05742 Ig1_VEGFR_like First immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor (R) and similar proteins. Ig1_VEGFR_like: first immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor(R) related proteins. The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGF-A interacts with both VEGFR-1 and VEGFR-2. VEGFR-1 binds strongest to VEGF, VEGF-2 binds more weakly. VEGFR-3 appears not to bind VEGF, but binds other members of the VEGF family (VEGF-C and -D). VEGFRs bind VEGFs with high affinity with the IG-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGF
Probab=91.10 E-value=0.32 Score=29.02 Aligned_cols=28 Identities=32% Similarity=0.396 Sum_probs=20.2
Q ss_pred CCeEEEeeecCCCCCCCCceEEEeeecccc
Q psy531 48 GESVVFNCGVDFPGDTPVPYVLQWEKKIVK 77 (80)
Q Consensus 48 Ge~VVlnCdvdfP~~~PiPYVvqW~KdG~~ 77 (80)
||.+.|.|.+.-..+ ++.-++|.+.|..
T Consensus 1 Ge~~~L~C~~~g~~~--~~~~i~W~~~~~~ 28 (84)
T cd05742 1 GETLVLNCTVLTELN--EGVDFQWTYPGKK 28 (84)
T ss_pred CCeEEEEEEEEeCCC--ccEEEEEecCCcc
Confidence 899999999964311 4556999876643
No 106
>cd05738 Ig2_RPTP_IIa_LAR_like Second immunoglobulin (Ig)-like domain of the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. Ig2_RPTP_IIa_LAR_like: domain similar to the second immunoglobulin (Ig)-like domain found in the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. LAR belongs to the RPTP type IIa subfamily. Members of this subfamily are cell adhesion molecule-like proteins involved in central nervous system (CNS) development. They have large extracellular portions, comprised of multiple Ig-like domains and two to nine fibronectin type III (FNIII) domains, and a cytoplasmic portion having two tandem phosphatase domains.
Probab=90.95 E-value=0.17 Score=29.84 Aligned_cols=23 Identities=22% Similarity=0.599 Sum_probs=17.3
Q ss_pred EEEeeecCCCCCCCCceEEEeeecccc
Q psy531 51 VVFNCGVDFPGDTPVPYVLQWEKKIVK 77 (80)
Q Consensus 51 VVlnCdvdfP~~~PiPYVvqW~KdG~~ 77 (80)
|.|.|.++ |.|.| .++|.|++.+
T Consensus 1 a~l~C~~~---G~P~p-~v~W~k~~~~ 23 (74)
T cd05738 1 ATMLCAAS---GNPDP-EITWFKDFLP 23 (74)
T ss_pred CEEEEEEe---EecCC-EEEEEECCEE
Confidence 47899764 77766 6899999764
No 107
>cd05901 Ig_Versican Immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), versican. Ig_Versican: immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), versican. In CSPGs, the Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, the CSPG aggrecan (not included in this group) forms cartilage link protein stabilized aggregates with HA. These aggregates contribute to the tissue's load bearing properties. Like aggrecan, versican has a wide distribution in connective tissue and extracellular matrices. Aggregates having other CSPGs substituting for aggrecan may contribute to the structural integrity of many different tissues. Members of the vertebrate HPLN (hyaluronan/HA
Probab=90.95 E-value=0.31 Score=33.43 Aligned_cols=28 Identities=29% Similarity=0.399 Sum_probs=22.5
Q ss_pred cCCeEEEeeecCCCC-------CCCCceEEEeeec
Q psy531 47 LGESVVFNCGVDFPG-------DTPVPYVLQWEKK 74 (80)
Q Consensus 47 vGe~VVlnCdvdfP~-------~~PiPYVvqW~Kd 74 (80)
.|++|.|.|.+.+.. ..+-+..|+|.|-
T Consensus 1 ~~g~v~LPC~f~~~p~~p~~~~~~~~~~rIkW~~~ 35 (117)
T cd05901 1 LSGSVVLPCRFSTLPTLPPSVITTSEFLRIKWTKI 35 (117)
T ss_pred CCCCEEEeeEEEecCCCCCcccCCCCCcEEEEEEe
Confidence 489999999999642 3556789999996
No 108
>cd05893 Ig_Palladin_C C-terminal immunoglobulin (Ig)-like domain of palladin. Ig_Palladin_C: C-terminal immunoglobulin (Ig)-like domain of palladin. Palladin belongs to the palladin-myotilin-myopalladin family. Proteins belonging to this family contain multiple Ig-like domains and function as scaffolds, modulating actin cytoskeleton. Palladin binds to alpha-actinin ezrin, vasodilator-stimulated phosphoprotein VASP, SPIN90 (DIP, mDia interacting protein), and Src. Palladin also binds F-actin directly, via its Ig3 domain. Palladin is expressed as several alternatively spliced isoforms, having various combinations of Ig-like domains, in a cell-type-specific manner. It has been suggested that palladin's different Ig-like domains may be specialized for distinct functions.
Probab=90.93 E-value=0.17 Score=30.65 Aligned_cols=23 Identities=30% Similarity=0.666 Sum_probs=18.2
Q ss_pred EEEeeecCCCCCCCCceEEEeeecccc
Q psy531 51 VVFNCGVDFPGDTPVPYVLQWEKKIVK 77 (80)
Q Consensus 51 VVlnCdvdfP~~~PiPYVvqW~KdG~~ 77 (80)
|.|.|.+. |.|.| .+.|.|+|.+
T Consensus 1 v~l~C~v~---G~P~P-~v~W~k~~~~ 23 (75)
T cd05893 1 VRLECRVS---GVPHP-QIFWKKENES 23 (75)
T ss_pred CEEEEEEe---EecCC-EEEEEECCEE
Confidence 56888875 88888 6889999765
No 109
>cd05895 Ig_Pro_neuregulin-1 Immunoglobulin (Ig)-like domain found in neuregulin (NRG)-1. Ig_Pro_neuregulin-1: immunoglobulin (Ig)-like domain found in neuregulin (NRG)-1. There are many NRG-1 isoforms which arise from the alternative splicing of mRNA. NRG-1 belongs to the neuregulin gene family, which is comprised of four genes. This group represents NRG-1. NRGs are signaling molecules, which participate in cell-cell interactions in the nervous system, breast, and heart, and other organ systems, and are implicated in the pathology of diseases including schizophrenia, multiple sclerosis, and breast cancer. The NRG-1 protein binds to and activates the tyrosine kinases receptors ErbB3 and ErbB4, initiating signaling cascades. NRG-1 has multiple functions; for example, in the brain it regulates various processes such as radial glia formation and neuronal migration, dendritic development, and expression of neurotransmitters receptors; in the peripheral nervous system NRG-1 regulates process
Probab=90.84 E-value=0.23 Score=28.99 Aligned_cols=25 Identities=16% Similarity=0.293 Sum_probs=17.5
Q ss_pred EEEeeecCCCCCCCCceEEEeeeccccc
Q psy531 51 VVFNCGVDFPGDTPVPYVLQWEKKIVKN 78 (80)
Q Consensus 51 VVlnCdvdfP~~~PiPYVvqW~KdG~~~ 78 (80)
++|.|... .+ +++..++|.|+|.+.
T Consensus 1 ~~L~C~a~--~~-~p~~~~~W~~~g~~i 25 (76)
T cd05895 1 LVLRCETV--SE-YPSLRFKWFKNGKEI 25 (76)
T ss_pred CEEEEecc--cC-CCCCceEEEECCccc
Confidence 47999974 22 344579999998754
No 110
>cd05748 Ig_Titin_like Immunoglobulin (Ig)-like domain of titin and similar proteins. Ig_Titin_like: immunoglobulin (Ig)-like domain found in titin-like proteins. Titin (also called connectin) is a fibrous sarcomeric protein specifically found in vertebrate striated muscle. Titin is gigantic, depending on isoform composition it ranges from 2970 to 3700 kDa, and is of a length that spans half a sarcomere. Titin largely consists of multiple repeats of Ig-like and fibronectin type 3 (FN-III)-like domains. Titin connects the ends of myosin thick filaments to Z disks and extends along the thick filament to the H zone. It appears to function similarly to an elastic band, keeping the myosin filaments centered in the sarcomere during muscle contraction or stretching. Within the sarcomere, titin is also attached to or is associated with myosin binding protein C (MyBP-C). MyBP-C appears to contribute to the generation of passive tension by titin, and similar to titin has repeated Ig-like and FN-
Probab=90.65 E-value=0.25 Score=28.65 Aligned_cols=23 Identities=22% Similarity=0.501 Sum_probs=18.6
Q ss_pred EEEeeecCCCCCCCCceEEEeeecccc
Q psy531 51 VVFNCGVDFPGDTPVPYVLQWEKKIVK 77 (80)
Q Consensus 51 VVlnCdvdfP~~~PiPYVvqW~KdG~~ 77 (80)
|.|.|.+. |.|.| -+.|.|+|..
T Consensus 2 ~~l~c~~~---G~P~p-~v~W~k~g~~ 24 (74)
T cd05748 2 VRLEVPIS---GRPTP-TVTWSKDGKP 24 (74)
T ss_pred EEEEeeEe---eeCCC-eEEEEECCEE
Confidence 67888775 88888 4999999865
No 111
>cd07700 IgV_CD8_beta Immunoglobulin (Ig) like domain of CD8 beta chain. IgV_CD8_beta: immunoglobulin (Ig)-like domain in CD8 beta. The CD8 glycoprotein plays an essential role in the control of T-cell selection, maturation and the T-cell receptor (TCR)-mediated response to peptide antigen. CD8 is comprised of alpha and beta subunits and is expressed as either an alpha/alpha or alpha/beta dimer. Both dimeric isoforms can serve as a coreceptor for T cell activation and differentiation, however they have distinct physiological roles, different cellular distributions, unique binding partners etc. Each CD8 subunit is comprised of an extracellular domain containing a V-type Ig-like domain, a single pass transmembrane portion and a short intracellular domain.
Probab=90.65 E-value=0.33 Score=30.66 Aligned_cols=31 Identities=13% Similarity=0.134 Sum_probs=22.5
Q ss_pred EEeecCCeEEEeeecCCCCCCCCceEEEeeeccc
Q psy531 43 ITALLGESVVFNCGVDFPGDTPVPYVLQWEKKIV 76 (80)
Q Consensus 43 ltA~vGe~VVlnCdvdfP~~~PiPYVvqW~KdG~ 76 (80)
++++.|+.|.|.|.+.=. ...+-+.|.|+..
T Consensus 1 ~~v~~G~~vtL~C~~~~~---~~~~~~~Wyrq~~ 31 (107)
T cd07700 1 ILVQTNNTVKLSCEAKGI---SENTRIYWLRWRQ 31 (107)
T ss_pred CEEcCCCCEEEEEEEecC---CCCCeEEEEEECC
Confidence 468999999999997521 1234689998844
No 112
>cd05879 Ig_P0 Immunoglobulin (Ig)-like domain of Protein zero (P0). Ig_P0ex: immunoglobulin (Ig) domain of Protein zero (P0). P0 accounts for over 50% of the total protein in peripheral nervous system (PNS) myelin. P0 is a single-pass transmembrane glycoprotein with a highly basic intracellular domain and an Ig domain. The extracellular domain of P0 (P0-ED) is similar to the Ig variable domain, carrying one acceptor sequence for N-linked glycosylation. P0 plays a role in membrane adhesion in the spiral wraps of the myelin sheath. The intracellular domain is thought to mediate membrane apposition of the cytoplasmic faces and may, through electrostatic interactions, interact directly with lipid headgroups. It is thought that homophilic interactions of the P0 extracellular domain mediate membrane juxtaposition in the extracellular space of PNS myelin.
Probab=90.63 E-value=0.72 Score=30.71 Aligned_cols=34 Identities=12% Similarity=0.237 Sum_probs=25.4
Q ss_pred cceEEeecCCeEEEeeecCCCC-CCCCceEEEeeec
Q psy531 40 AVHITALLGESVVFNCGVDFPG-DTPVPYVLQWEKK 74 (80)
Q Consensus 40 P~~ltA~vGe~VVlnCdvdfP~-~~PiPYVvqW~Kd 74 (80)
|..++|.+|+.|.|.|.+.... ..+.+ -|+|...
T Consensus 5 ~~ev~a~~G~~v~L~C~f~~~~~~~~~~-~v~W~~~ 39 (116)
T cd05879 5 DREVYGTVGSDVTLSCSFWSSEWISDDI-SFTWHYQ 39 (116)
T ss_pred cceEEEEcCCcEEEEEEEecCCCCCCcE-EEEEEEc
Confidence 4567899999999999996643 34554 5899553
No 113
>cd05727 Ig2_Contactin-2-like Second Ig domain of the neural cell adhesion molecule contactin-2 and similar proteins. Ig2_Contactin-2-like: second Ig domain of the neural cell adhesion molecule contactin-2. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (aliases TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. The first four Ig domains form the intermolecular binding fragment which arranges as a compact U-shaped module by contacts between Ig domains 1 and 4, and domains 2 and 3. It has been proposed that a linear zipper-like array forms, from contactin-2 molecules alternatively provided by the two apposed membranes.
Probab=90.59 E-value=0.58 Score=30.80 Aligned_cols=35 Identities=23% Similarity=0.289 Sum_probs=26.5
Q ss_pred ceEEeecCCeEEEeeecCCCCCCCCceEEEeeeccccc
Q psy531 41 VHITALLGESVVFNCGVDFPGDTPVPYVLQWEKKIVKN 78 (80)
Q Consensus 41 ~~ltA~vGe~VVlnCdvdfP~~~PiPYVvqW~KdG~~~ 78 (80)
+-..+..|+.++|.|. -|.+.|.| .+.|.|++.+.
T Consensus 11 ~~~~v~eG~~~~L~C~--pP~g~P~p-~~~W~k~~~~~ 45 (96)
T cd05727 11 DEVKVKEGWGVVLFCD--PPPHYPDL-SYRWLLNEFPN 45 (96)
T ss_pred CceeeeeCCcEEEeeC--CCCCCCCC-EEEEEECCccc
Confidence 3366889999999996 35666654 48999998753
No 114
>cd05846 Ig1_MRC-OX-2_like First immunoglobulin (Ig) domain of rat MRC OX-2 antigen (also known as CD200) and similar proteins. Ig1_ MRC-OX-2_like: domain similar to the first immunoglobulin (Ig) domain of rat MRC OX-2 antigen (also known as CD200). MRC OX-2 is a membrane glycoprotein expressed in a variety of lymphoid and non-lymphoid cells in rats. It has a similar broad distribution pattern in humans. MRC OX-2 may regulate myeloid cell activity. The protein has an extracellular portion containing two Ig-like domains, a transmembrane portion, and a cytoplasmic portion.
Probab=90.46 E-value=0.37 Score=29.88 Aligned_cols=25 Identities=24% Similarity=0.691 Sum_probs=19.7
Q ss_pred CCeEEEeeecCCCCCCCCceEEEeeecc
Q psy531 48 GESVVFNCGVDFPGDTPVPYVLQWEKKI 75 (80)
Q Consensus 48 Ge~VVlnCdvdfP~~~PiPYVvqW~KdG 75 (80)
|+.|.|.|.+....+ .+.|.|.|..
T Consensus 1 G~~vtL~C~~~~~~~---~~~v~W~k~~ 25 (97)
T cd05846 1 GGNVTLSCNLTLPEE---VLQVTWQKIQ 25 (97)
T ss_pred CCcEEEEEEeCCCCe---eEEEEEEEcC
Confidence 899999999876532 4789999863
No 115
>cd05775 Ig_SLAM-CD84_like_N N-terminal immunoglobulin (Ig)-like domain of the signaling lymphocyte activation molecule (SLAM) family, CD84_like. Ig_SLAM-CD84_like_N: The N-terminal immunoglobulin (Ig)-like domain of the signaling lymphocyte activation molecule (SLAM) family, CD84_like. The SLAM family is a group of immune-cell specific receptors that can regulate both adaptive and innate immune responses. Members of this group include proteins such as CD84, SLAM (CD150), Ly-9 (CD229), NTB-A (ly-108, SLAM6), 19A (CRACC), and SLAMF9. The genes coding for the SLAM family are nested on chromosome 1, in humans at 1q23, and in mice at 1H2. The SLAM family is a subset of the CD2 family, which also includes CD2 and CD58 located on chromosome 1 at 1p13 in humans. In mice, CD2 is located on chromosome 3, and there is no CD58 homolog. The SLAM family proteins are organized as an extracellular domain with either two or four Ig-like domains, a single transmembrane segment, and a cytoplasmic region
Probab=90.35 E-value=0.29 Score=30.75 Aligned_cols=27 Identities=22% Similarity=0.315 Sum_probs=20.1
Q ss_pred eecCCeEEEeeecCCCCCCCCceEEEeeec
Q psy531 45 ALLGESVVFNCGVDFPGDTPVPYVLQWEKK 74 (80)
Q Consensus 45 A~vGe~VVlnCdvdfP~~~PiPYVvqW~Kd 74 (80)
+.+|++|.|+|.+.-+ .. -..+.|.|.
T Consensus 1 g~~G~sVtL~c~~~~~--~~-~~~v~W~~~ 27 (97)
T cd05775 1 GILGGSVTLPLNIPDG--TE-IESITWSFN 27 (97)
T ss_pred CccCCeEEEeCCCCCC--cE-EEEEEEecC
Confidence 4689999999988532 22 267999886
No 116
>PHA02785 IL-beta-binding protein; Provisional
Probab=90.31 E-value=0.24 Score=37.55 Aligned_cols=32 Identities=22% Similarity=0.296 Sum_probs=24.3
Q ss_pred eecCCeEEEeeecCC--CCCCCCceEEEeeecccc
Q psy531 45 ALLGESVVFNCGVDF--PGDTPVPYVLQWEKKIVK 77 (80)
Q Consensus 45 A~vGe~VVlnCdvdf--P~~~PiPYVvqW~KdG~~ 77 (80)
+..||.++|.|.+.. ..|.| ++-+.|.|.|.+
T Consensus 38 ~~~ge~~~l~C~~~~~~~~g~p-~~~i~W~K~g~~ 71 (326)
T PHA02785 38 ELENEPVILPCPQINTLSSGYN-ILDILWEKRGAD 71 (326)
T ss_pred hhcCCCEEEECCCccccccCCC-CceEEEEECCCc
Confidence 667999999999742 24555 468999999754
No 117
>cd05900 Ig_Aggrecan Immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), aggrecan. Ig_Aggrecan: immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), aggrecan. These aggregates contribute to the tissue's load bearing properties. In CSPGs, the Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, aggrecan forms cartilage link protein stabilized aggregates with HA. These aggregates contribute to the tissue's load bearing properties. Aggrecan has a wide distribution in connective tissue and extracellular matrices. Members of the vertebrate HPLN (hyaluronan/HA and proteoglycan binding link) protein family are physically linked adjacent to CSPG genes.
Probab=90.09 E-value=0.39 Score=31.90 Aligned_cols=29 Identities=24% Similarity=0.473 Sum_probs=21.5
Q ss_pred cCCeEEEeeecCCCC-C-------CCCceEEEeeecc
Q psy531 47 LGESVVFNCGVDFPG-D-------TPVPYVLQWEKKI 75 (80)
Q Consensus 47 vGe~VVlnCdvdfP~-~-------~PiPYVvqW~KdG 75 (80)
+|+.|.|.|.+..+. . .|-...++|.|..
T Consensus 1 ~G~~VtLpC~~~~~~~~~~~~~~~~~~~~~I~W~k~~ 37 (112)
T cd05900 1 LGSSLLIPCYFQDPIAKDPGAPTVAPLSPRIKWSFIS 37 (112)
T ss_pred CCCcEEEeeEEeCCcCccccccccCCCCCEEEEEEec
Confidence 599999999998753 1 1234678999963
No 118
>cd05741 Ig_CEACAM_D1_like First immunoglobulin (Ig)-like domain of carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) and similar proteins. Ig_CEACAM_D1_like : immunoglobulin (IG)-like domain 1 in carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) protein subfamily-like. The CEA family is a group of anchored or secreted glycoproteins, expressed by epithelial cells, leukocytes, endothelial cells and placenta. The CEA family is divided into the CEACAM and pregnancy-specific glycoprotein (PSG) subfamilies. This group represents the CEACAM subfamily. CEACAM1 has many important cellular functions, it is a cell adhesion molecule, and a signaling molecule that regulates the growth of tumor cells, it is an angiogenic factor, and is a receptor for bacterial and viral pathogens, including mouse hepatitis virus (MHV). In mice, four isoforms of CEACAM1 generated by alternative splicing have either two [D1, D4] or four [D1-D4] Ig-like domains on the cell surf
Probab=90.08 E-value=0.43 Score=28.34 Aligned_cols=25 Identities=24% Similarity=0.137 Sum_probs=19.2
Q ss_pred CCeEEEeeecCCCCCCCCceEEEeeeccc
Q psy531 48 GESVVFNCGVDFPGDTPVPYVLQWEKKIV 76 (80)
Q Consensus 48 Ge~VVlnCdvdfP~~~PiPYVvqW~KdG~ 76 (80)
||+|.|.|.+.. ..++-+.|.|...
T Consensus 1 G~~VtL~c~~~~----~~~~~i~W~~~~~ 25 (92)
T cd05741 1 GESVTLPVSNLP----ENLQEITWYKGKD 25 (92)
T ss_pred CCcEEEEcccCC----CCCEEEEEECCCC
Confidence 899999998764 2346799999753
No 119
>cd05720 Ig_CD8_alpha Immunoglobulin (Ig) like domain of CD8 alpha chain. Ig_CD8_alpha: immunoglobulin (Ig)-like domain in CD8 alpha. The CD8 glycoprotein plays an essential role in the control of T-cell selection, maturation and the T-cell receptor (TCR)-mediated response to peptide antigen. CD8 is comprised of alpha and beta subunits and is expressed as either an alphaalpha or alphabeta dimer. Both dimeric isoforms can serve as a coreceptor for T cell activation and differentiation, however they have distinct physiological roles, different cellular distributions, unique binding partners etc. Each CD8 subunit is comprised of an extracellular domain containing a v-type Ig-like domain, a single pass transmembrane portion and a short intracellular domain. The Ig domain of CD8 alpha binds to antibodies.
Probab=89.89 E-value=0.36 Score=30.66 Aligned_cols=29 Identities=28% Similarity=0.335 Sum_probs=21.3
Q ss_pred EeecCCeEEEeeecCCCCCCCCceEEEeeeccc
Q psy531 44 TALLGESVVFNCGVDFPGDTPVPYVLQWEKKIV 76 (80)
Q Consensus 44 tA~vGe~VVlnCdvdfP~~~PiPYVvqW~KdG~ 76 (80)
+++.|+.|.|+|.+.-. -.+-+.|.|+..
T Consensus 2 ~v~~G~~vtL~C~~~~~----~~~~v~Wyrq~~ 30 (104)
T cd05720 2 DAELGQKVELKCEVLNS----SPTGCSWLFQPP 30 (104)
T ss_pred cccCCCeEEEEEEecCC----CCCcEEEEEeCC
Confidence 47899999999986432 124588988763
No 120
>cd05711 Ig_FcalphaRI Immunoglobulin (IG)-like domain of of FcalphaRI. IG_FcalphaRI : immunoglobulin (IG)-like domain of of FcalphaRI. FcalphaRI (CD89) is an IgA-specific receptor that is expressed on monocytes, eosinophils, neutrophils and macrophages. FcalphaRI mediates IgA-induced immune effector responses such as phagocytosis, antibody-dependent cell-mediated cytotoxicity and respiratory burst. Both monomeric and dimeric IgA can bind to FcalphaRI, and monomeric or dimeric IgA immune complexes can activate phagocytosis and other immune responses through the clustering of FcalphaRI. The Fc RI ectodomain is comprised of two Ig-like domains oriented at about 90 degree to each another.
Probab=89.88 E-value=0.42 Score=30.00 Aligned_cols=28 Identities=25% Similarity=0.228 Sum_probs=22.2
Q ss_pred eecCCeEEEeeecCCCCCCCCceEEEeeecccc
Q psy531 45 ALLGESVVFNCGVDFPGDTPVPYVLQWEKKIVK 77 (80)
Q Consensus 45 A~vGe~VVlnCdvdfP~~~PiPYVvqW~KdG~~ 77 (80)
-..||.|.|+|....+.+ .++|.|+|..
T Consensus 12 V~~G~~VTL~C~~~~~~~-----~f~l~k~g~~ 39 (94)
T cd05711 12 VPSGENVTLQCHSDIRFD-----RFILYKEGRS 39 (94)
T ss_pred cCCCCeEEEEEecCCCCC-----EEEEEECCCC
Confidence 457999999997776554 3899999865
No 121
>cd05763 Ig_1 Subgroup of the immunoglobulin (Ig) superfamily. Ig_1: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.
Probab=89.85 E-value=0.36 Score=28.14 Aligned_cols=22 Identities=23% Similarity=0.622 Sum_probs=17.2
Q ss_pred EEEeeecCCCCCCCCceEEEeeeccc
Q psy531 51 VVFNCGVDFPGDTPVPYVLQWEKKIV 76 (80)
Q Consensus 51 VVlnCdvdfP~~~PiPYVvqW~KdG~ 76 (80)
|.|.|.+. |.|.| .+.|.|+|.
T Consensus 1 a~l~C~~~---G~P~P-~v~W~k~~~ 22 (75)
T cd05763 1 ARLECAAT---GHPTP-QIAWQKDGG 22 (75)
T ss_pred CEeEeecc---cccCC-EEEEEeCCC
Confidence 46889663 78887 589999985
No 122
>cd05874 Ig6_NrCAM Sixth immunoglobulin (Ig)-like domain of NrCAM (Ng (neuronglia) CAM-related cell adhesion molecule). Ig6_NrCAM: sixth immunoglobulin (Ig)-like domain of NrCAM (Ng (neuronglia) CAM-related cell adhesion molecule). NrCAM belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region, and an intracellular domain. NrCAM is primarily expressed in the nervous system.
Probab=89.84 E-value=0.34 Score=29.21 Aligned_cols=23 Identities=22% Similarity=0.660 Sum_probs=18.6
Q ss_pred EEEeeecCCCCCCCCceEEEeeecccc
Q psy531 51 VVFNCGVDFPGDTPVPYVLQWEKKIVK 77 (80)
Q Consensus 51 VVlnCdvdfP~~~PiPYVvqW~KdG~~ 77 (80)
|+|.|.+ .|.|.|- ++|.|+|.+
T Consensus 1 ~~l~C~a---~G~P~P~-i~W~k~g~~ 23 (77)
T cd05874 1 IVIQCEA---KGKPPPS-FSWTRNGTH 23 (77)
T ss_pred CEEEeeC---cccCCCe-EEEEECCeE
Confidence 5788987 4888888 599999875
No 123
>cd05876 Ig3_L1-CAM Third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). Ig3_L1-CAM: third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains, five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM.
Probab=89.42 E-value=0.32 Score=28.47 Aligned_cols=23 Identities=22% Similarity=0.621 Sum_probs=18.0
Q ss_pred EEEeeecCCCCCCCCceEEEeeecccc
Q psy531 51 VVFNCGVDFPGDTPVPYVLQWEKKIVK 77 (80)
Q Consensus 51 VVlnCdvdfP~~~PiPYVvqW~KdG~~ 77 (80)
|+|.|.+. |.|.| .+.|.|++.+
T Consensus 1 ~~L~C~~~---G~P~P-~v~W~k~~~~ 23 (71)
T cd05876 1 LVLECIAE---GLPTP-EVHWDRIDGP 23 (71)
T ss_pred CEEEEEee---EecCC-eEEEEECCcC
Confidence 47889874 77877 5899999764
No 124
>cd05898 Ig5_KIRREL3 Fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 protein (also known as Neph2). Ig5_KIRREL3: the fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 protein (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1). These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development. Neph1 and 2 may mediate axonal guidance and synapse formation in certain areas of the CNS. In the kidney, they participate in the formation of the slit diaphragm.
Probab=89.39 E-value=0.68 Score=30.28 Aligned_cols=32 Identities=28% Similarity=0.364 Sum_probs=23.9
Q ss_pred eEEeecCCeEEEeeecCCCCCCCCceEEEeeeccc
Q psy531 42 HITALLGESVVFNCGVDFPGDTPVPYVLQWEKKIV 76 (80)
Q Consensus 42 ~ltA~vGe~VVlnCdvdfP~~~PiPYVvqW~KdG~ 76 (80)
-..|..|+.|.|-|.+. +.|.|=.+.|..++.
T Consensus 10 s~~~~~G~~~~L~C~~~---s~P~P~~i~W~w~~~ 41 (98)
T cd05898 10 VQYAVRGERGKVKCFIG---STPPPDRIAWAWKEN 41 (98)
T ss_pred eEEEeCCCcEEEEEEEc---cCCCCcEEEEEEccc
Confidence 34589999999999994 455666677777654
No 125
>cd05736 Ig2_Follistatin_like Second immunoglobulin (Ig)-like domain of a follistatin-like molecule encoded by the Mahya gene and similar proteins. Ig2_Follistatin_like: domain similar to the second immunoglobulin (Ig)-like domain found in a follistatin-like molecule encoded by the CNS-related Mahya gene. Mahya genes have been retained in certain Bilaterian branches during evolution. They are conserved in Hymenoptera and Deuterostomes, but are absent from other metazoan species such as fruit fly and nematode. Mahya proteins are secretory, with a follistatin-like domain (Kazal-type serine/threonine protease inhibitor domain and EF-hand calcium-binding domain), two Ig-like domains, and a novel C-terminal domain. Mahya may be involved in learning and memory and in processing of sensory information in Hymenoptera and vertebrates. Follistatin is a secreted, multidomain protein that binds activins with high affinity and antagonizes their signaling.
Probab=89.06 E-value=0.34 Score=28.20 Aligned_cols=23 Identities=26% Similarity=0.664 Sum_probs=17.3
Q ss_pred EEEeeecCCCCCCCCceEEEeeecccc
Q psy531 51 VVFNCGVDFPGDTPVPYVLQWEKKIVK 77 (80)
Q Consensus 51 VVlnCdvdfP~~~PiPYVvqW~KdG~~ 77 (80)
+.|.|.+. |.|.| .++|.|+|.+
T Consensus 1 ~~L~C~v~---g~P~p-~v~W~k~~~~ 23 (76)
T cd05736 1 ASLRCHAE---GIPLP-RLTWLKNGMD 23 (76)
T ss_pred CEeEeEee---ecCCC-EEEEEECCEE
Confidence 46889876 56666 4799999865
No 126
>cd05744 Ig_Myotilin_C_like Immunoglobulin (Ig)-like domain of myotilin, palladin, and myopalladin. Ig_Myotilin_like_C: immunoglobulin (Ig)-like domain in myotilin, palladin, and myopalladin. Myotilin, palladin, and myopalladin function as scaffolds that regulate actin organization. Myotilin and myopalladin are most abundant in skeletal and cardiac muscle; palladin is ubiquitously expressed in the organs of developing vertebrates and plays a key role in cellular morphogenesis. The three family members each interact with specific molecular partners: all three bind to alpha-actinin; in addition, palladin also binds to vasodilator-stimulated phosphoprotein (VASP) and ezrin, myotilin binds to filamin and actin, and myopalladin also binds to nebulin and cardiac ankyrin repeat protein (CARP).
Probab=88.82 E-value=0.36 Score=28.78 Aligned_cols=24 Identities=29% Similarity=0.556 Sum_probs=18.4
Q ss_pred EEEeeecCCCCCCCCceEEEeeeccccc
Q psy531 51 VVFNCGVDFPGDTPVPYVLQWEKKIVKN 78 (80)
Q Consensus 51 VVlnCdvdfP~~~PiPYVvqW~KdG~~~ 78 (80)
|.|.|.+. |.|.|. +.|.|+|.+-
T Consensus 1 v~L~C~v~---G~P~P~-v~W~k~~~~i 24 (75)
T cd05744 1 VRLECRVS---AIPPPQ-IFWKKNNEML 24 (75)
T ss_pred CEEEEEEe---ecCCCe-EEEEECCEEC
Confidence 46889884 777775 8999998653
No 127
>cd05731 Ig3_L1-CAM_like Third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). Ig3_L1-CAM_like: domain similar to the third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM and human neurofascin.
Probab=88.78 E-value=0.33 Score=27.38 Aligned_cols=23 Identities=22% Similarity=0.531 Sum_probs=17.9
Q ss_pred EEEeeecCCCCCCCCceEEEeeecccc
Q psy531 51 VVFNCGVDFPGDTPVPYVLQWEKKIVK 77 (80)
Q Consensus 51 VVlnCdvdfP~~~PiPYVvqW~KdG~~ 77 (80)
|.|.|.+. |.|.|. ++|.|++.+
T Consensus 1 v~l~C~~~---g~P~p~-v~W~k~~~~ 23 (71)
T cd05731 1 LLLECIAE---GLPTPE-ISWIKIGGE 23 (71)
T ss_pred CEEEEEee---EecCCe-EEEEECCeE
Confidence 46889875 778886 899998764
No 128
>cd05750 Ig_Pro_neuregulin Immunoglobulin (Ig)-like domain in neuregulins (NRGs). Ig_Pro_neuregulin: immunoglobulin (Ig)-like domain in neuregulins (NRGs). NRGs are signaling molecules, which participate in cell-cell interactions in the nervous system, breast, heart, and other organ systems, and are implicated in the pathology of diseases including schizophrenia, multiple sclerosis, and breast cancer. There are four members of the neuregulin gene family (NRG1, -2, -3, and -4). The NRG-1 protein, binds to and activates the tyrosine kinases receptors ErbB3 and ErbB4, initiating signaling cascades. The other NRGs proteins bind one or the other or both of these ErbBs. NRG-1 has multiple functions; for example, in the brain it regulates various processes such as radial glia formation and neuronal migration, dendritic development, and expression of neurotransmitters receptors; in the peripheral nervous system NRG-1 regulates processes such as target cell differentiation, and Schwann cell surv
Probab=88.42 E-value=0.51 Score=26.88 Aligned_cols=23 Identities=22% Similarity=0.398 Sum_probs=17.1
Q ss_pred EEeeecCCCCC-CCCceEEEeeeccccc
Q psy531 52 VFNCGVDFPGD-TPVPYVLQWEKKIVKN 78 (80)
Q Consensus 52 VlnCdvdfP~~-~PiPYVvqW~KdG~~~ 78 (80)
+|.|.+. + .|+| -++|.|+|.+.
T Consensus 2 ~l~C~~~---g~~P~p-~~~W~k~g~~l 25 (75)
T cd05750 2 VLKCEAT---SEYPSL-RFKWFKDGKEL 25 (75)
T ss_pred EEEEEcc---CCCCCc-eEEEEcCCeec
Confidence 6889886 4 5655 67999998653
No 129
>smart00406 IGv Immunoglobulin V-Type.
Probab=88.38 E-value=0.65 Score=26.22 Aligned_cols=25 Identities=20% Similarity=0.355 Sum_probs=19.1
Q ss_pred eEEEeeecCCCCCCCCceEEEeeeccc
Q psy531 50 SVVFNCGVDFPGDTPVPYVLQWEKKIV 76 (80)
Q Consensus 50 ~VVlnCdvdfP~~~PiPYVvqW~KdG~ 76 (80)
.|.|+|.+..... + .+.+.|.|+..
T Consensus 1 ~v~l~C~~~~~~~-~-~~~v~W~~~~~ 25 (81)
T smart00406 1 SVTLSCKASGFTF-S-SYYVSWVRQPP 25 (81)
T ss_pred CEEEEEEEecccc-c-eeEEEEEEeCC
Confidence 3789999887643 2 68899999764
No 130
>cd05751 Ig1_LILRB1_like First immunoglobulin (Ig)-like domain found in Leukocyte Ig-like receptors (LILR)B1 (also known as LIR-1) and similar proteins. Ig1_LILRB1_like: domain similar to the first immunoglobulin (Ig)-like domain found in Leukocyte Ig-like receptors (LILR)B1 (also known as LIR-1). This group includes, LILRA5 (LIR9), an activating natural cytotoxicity receptor NKp46, and the immune-type receptor glycoprotein VI (GPVI). LILRs are a family of immunoreceptors expressed on expressed on T and B cells, on monocytes, dendritic cells, and subgroups of natural killer (NK) cells. The human LILR family contains nine proteins (LILRA1-3,and 5, and LILRB1-5). From functional assays, and as the cytoplasmic domains of various LILRs, for example LILRB1 (LIR-1), LILRB2 (LIR-2), and LILRB3 (LIR-3) contain immunoreceptor tyrosine-based inhibitory motifs (ITIMs) it is thought that LIR proteins are inhibitory receptors. Of the eight LIR family proteins, only LIR-1(LILRB1), and LIR-2 (LILRB2),
Probab=88.36 E-value=0.61 Score=28.75 Aligned_cols=28 Identities=14% Similarity=0.237 Sum_probs=22.7
Q ss_pred eecCCeEEEeeecCCCCCCCCceEEEeeecccc
Q psy531 45 ALLGESVVFNCGVDFPGDTPVPYVLQWEKKIVK 77 (80)
Q Consensus 45 A~vGe~VVlnCdvdfP~~~PiPYVvqW~KdG~~ 77 (80)
...|+.|.|.|.-+.|... .+|.|+|..
T Consensus 13 V~~G~~VtL~C~~~~~~~~-----f~l~k~g~~ 40 (91)
T cd05751 13 VPLGKPVTLRCQGPYGAVE-----YRLYREGST 40 (91)
T ss_pred cCCCCcEEEEEecCCCCCE-----EEEEECCCC
Confidence 5689999999999877444 688998764
No 131
>cd04981 IgV_H Immunoglobulin (Ig) heavy chain (H), variable (V) domain. IgV_H: Immunoglobulin (Ig) heavy chain (H), variable (V) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which can associate with any of the heavy chains. This family includes alpha, gamma, delta, epsilon, and mu heavy chains.
Probab=88.15 E-value=0.7 Score=30.07 Aligned_cols=35 Identities=14% Similarity=0.241 Sum_probs=25.4
Q ss_pred CCcceEEeecCCeEEEeeecCCCC-CCCCceEEEeeecc
Q psy531 38 SNAVHITALLGESVVFNCGVDFPG-DTPVPYVLQWEKKI 75 (80)
Q Consensus 38 ~~P~~ltA~vGe~VVlnCdvdfP~-~~PiPYVvqW~KdG 75 (80)
+.|..++++.|+.|.|+|.+.-.. +. +-+.|.|+.
T Consensus 2 ~~~~~~~v~~G~~vtL~C~~~~~~~~~---~~~~WYkQ~ 37 (117)
T cd04981 2 VESGPGLVKPGQSLKLSCKASGFTFTS---YGVNWVRQA 37 (117)
T ss_pred ccCCCeEEcCCCCEEEEEEEeCCCccc---ceEEEEEEC
Confidence 467788899999999999864221 12 348898874
No 132
>PHA02987 Ig domain OX-2-like protein; Provisional
Probab=87.81 E-value=0.77 Score=34.57 Aligned_cols=32 Identities=22% Similarity=0.333 Sum_probs=25.1
Q ss_pred ceEEeecCCeEEEeeecCCCCCCCCceEEEeeecc
Q psy531 41 VHITALLGESVVFNCGVDFPGDTPVPYVLQWEKKI 75 (80)
Q Consensus 41 ~~ltA~vGe~VVlnCdvdfP~~~PiPYVvqW~KdG 75 (80)
..+++..||.|.|.|....+...+. |+|.|+.
T Consensus 23 ~~v~V~ege~VtLsCs~t~s~~~~q---VtWkK~~ 54 (189)
T PHA02987 23 VKITVSEHVNVKISCNKTSSFNSIL---ITWKKNN 54 (189)
T ss_pred EEEEEcCCCCEEEEEecCCCCccce---EEEEEcC
Confidence 4577999999999999876654433 9999864
No 133
>cd05860 Ig4_SCFR Fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR). Ig4_SCFR: The fourth Immunoglobulin (Ig)-like domain in stem cell factor receptor (SCFR). SCFR is organized as an extracellular component having five IG-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. SCFR and its ligand SCF are critical for normal hematopoiesis, mast cell development, melanocytes and gametogenesis. SCF binds to the second and third Ig-like domains of SCFR. This fourth Ig-like domain participates in SCFR dimerization, which follows ligand binding. Deletion of this fourth domain abolishes the ligand-induced dimerization of SCFR and completely inhibits signal transduction.
Probab=87.42 E-value=0.81 Score=30.89 Aligned_cols=34 Identities=21% Similarity=0.182 Sum_probs=27.0
Q ss_pred ceEEeecCCeEEEeeecCCCCCCCCceEEEeeecccc
Q psy531 41 VHITALLGESVVFNCGVDFPGDTPVPYVLQWEKKIVK 77 (80)
Q Consensus 41 ~~ltA~vGe~VVlnCdvdfP~~~PiPYVvqW~KdG~~ 77 (80)
..+++++||++.|.|.++ .-|.|--++|.|++..
T Consensus 11 ~~~~v~~gE~~~L~V~ie---AYP~p~~~~W~~~~~~ 44 (101)
T cd05860 11 TTIFVNAGENLDLIVEYE---AYPKPEHQQWIYMNRT 44 (101)
T ss_pred ceEEEECCCCEEEEEEEE---eCCCCeeeEEEcCCcc
Confidence 457799999999999997 3345556899999763
No 134
>cd05864 Ig2_VEGFR-2 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 2 (VEGFR-2). Ig2_VEGF-2: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 2 (VEGFR-2). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-2 (KDR/Flk-1) is a major mediator of the mitogenic, angiogenic and microvascular permeability-enhancing effects of VEGF-A; VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGF-A also interacts with VEGFR-1, which it binds more strongly than VEGFR-2. VEGFR-2 and -1 may mediate a chemotactic and a survival signal in hematopoietic stem cells or leukemia cells.
Probab=87.07 E-value=0.42 Score=28.82 Aligned_cols=24 Identities=21% Similarity=0.191 Sum_probs=18.1
Q ss_pred EEEeeecCCCCCCCCceEEEeeeccccc
Q psy531 51 VVFNCGVDFPGDTPVPYVLQWEKKIVKN 78 (80)
Q Consensus 51 VVlnCdvdfP~~~PiPYVvqW~KdG~~~ 78 (80)
|.|.|.+. |.|.|- +.|.|+|++-
T Consensus 1 ~~~~c~v~---G~P~P~-v~W~k~g~~l 24 (70)
T cd05864 1 VKIPVKYY---GYPPPE-VKWYKNGQLI 24 (70)
T ss_pred CEEEeEEE---EeCCCE-EEEEECCEEC
Confidence 45777765 777777 6999999764
No 135
>cd05854 Ig6_Contactin-2 Sixth Ig domain of contactin-2. Ig6_Contactin-2: Sixth Ig domain of the neural cell adhesion molecule contactin-2-like. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. It may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module by contacts between IG domains 1 and 4, and domains 2 and 3. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-2 is also expressed in retinal amacrine cells in the developing c
Probab=86.96 E-value=0.78 Score=28.11 Aligned_cols=26 Identities=15% Similarity=0.424 Sum_probs=18.5
Q ss_pred CeEEEeeecCCCCCCCCce-EEEeeecccc
Q psy531 49 ESVVFNCGVDFPGDTPVPY-VLQWEKKIVK 77 (80)
Q Consensus 49 e~VVlnCdvdfP~~~PiPY-VvqW~KdG~~ 77 (80)
|.|.|-|.+. +.|.|= -+.|.|+|.+
T Consensus 1 ~~~~L~C~a~---g~P~p~~~v~W~~~g~~ 27 (85)
T cd05854 1 ENLTLQCHAS---HDPTMDLTFTWSLDDFP 27 (85)
T ss_pred CcEEEEEEEe---cCCCCCeEEEEEECCeE
Confidence 5688999876 445542 3789999865
No 136
>cd00096 Ig Immunoglobulin domain. Ig: immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of this group are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as, T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as, butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.
Probab=85.23 E-value=1.1 Score=22.34 Aligned_cols=24 Identities=25% Similarity=0.378 Sum_probs=17.6
Q ss_pred EEEeeecCCCCCCCCceEEEeeeccccc
Q psy531 51 VVFNCGVDFPGDTPVPYVLQWEKKIVKN 78 (80)
Q Consensus 51 VVlnCdvdfP~~~PiPYVvqW~KdG~~~ 78 (80)
|.|.|.+.. +.+..++|.|.+...
T Consensus 1 ~~l~C~~~~----~~~~~~~W~~~~~~~ 24 (74)
T cd00096 1 VTLTCLASG----PPPPTITWLKNGKPL 24 (74)
T ss_pred CEEEEEecC----CCCCcEEEEECCEEC
Confidence 468898886 445669999987553
No 137
>cd05862 Ig1_VEGFR First immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor(R). IG1_VEGFR: first immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor(R). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGF_A interacts with both VEGFR-1 and VEGFR-2. VEGFR-1 binds strongest to VEGF, VEGF-2 binds more weakly. VEGFR-3 appears not to bind VEGF, but binds other members of the VEGF family (VEGF-C and -D). VEGFRs bind VEGFs with high affinity with the IG-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-2 is a major mediator of the mitogenic, angioge
Probab=83.86 E-value=1.5 Score=27.00 Aligned_cols=27 Identities=30% Similarity=0.503 Sum_probs=19.5
Q ss_pred CCeEEEeeecCCCCCCCCceEEEeeeccc
Q psy531 48 GESVVFNCGVDFPGDTPVPYVLQWEKKIV 76 (80)
Q Consensus 48 Ge~VVlnCdvdfP~~~PiPYVvqW~KdG~ 76 (80)
||.+.|+|.+.- +..+.+-++|...+.
T Consensus 1 Ge~~~L~C~~~~--~~~~~~~~~W~~p~~ 27 (86)
T cd05862 1 GEKLVLNCTART--ELNVGIDFQWDYPGK 27 (86)
T ss_pred CCcEEEEEEEEe--CCCCcEEEEEEcCCc
Confidence 899999999942 223346689987664
No 138
>cd05766 IgC_MHC_II_beta Class II major histocompatibility complex (MHC) beta chain immunoglobulin domain. IgC_MHC_II_beta: Immunoglobulin (Ig) domain of major histocompatibility complex (MHC) class II beta chain. MHC class II molecules play a key role in the initiation of the antigen-specific immune reponse. In both humans and in mice these molecules have been shown to be expressed constitutively on the cell surface of professional antigen-presenting cells (APCs), for example on B-lymphocytes, monocytes, and macrophages. The expression of these molecules has been shown to be induced in nonprofessional APCs such as keratinocyctes, and they are expressed on the surface of activated human T cells and on T cells from other species. The MHC II molecules present antigenic peptides to CD4(+) T-lymphocytes. These peptides derive mostly from protelytic processing via the endocytic pathway, of antigens internalized by the APC. These peptides bind to the MHC class II molecules in the endosome be
Probab=83.07 E-value=1.1 Score=28.50 Aligned_cols=28 Identities=21% Similarity=0.440 Sum_probs=22.0
Q ss_pred ecCCeEEEeeecC--CCCCCCCceEEEeeecccc
Q psy531 46 LLGESVVFNCGVD--FPGDTPVPYVLQWEKKIVK 77 (80)
Q Consensus 46 ~vGe~VVlnCdvd--fP~~~PiPYVvqW~KdG~~ 77 (80)
..|+.+.|.|.+. ||.+ --|.|.|+|.+
T Consensus 12 ~~~~~~~L~C~~~gFyP~~----i~v~W~~~g~~ 41 (94)
T cd05766 12 SLSHPHLLVCHVWGFYPPE----ITVKWFKNGQE 41 (94)
T ss_pred cCCCCeEEEEEEeeecCCC----CEEEEEECCee
Confidence 3578899999996 6744 24899999976
No 139
>PRK00059 prsA peptidylprolyl isomerase; Provisional
Probab=82.54 E-value=2.3 Score=31.72 Aligned_cols=46 Identities=9% Similarity=0.073 Sum_probs=30.1
Q ss_pred hchhHHHHHHHHHHHHhhccCCCCCCCC----cceEEeecCCeEEEeeec
Q psy531 12 TNLHHISLQVLLIITLVHFKGVSPDISN----AVHITALLGESVVFNCGV 57 (80)
Q Consensus 12 ~~~~~~~~~~ll~i~l~~~sg~~g~~~~----P~~ltA~vGe~VVlnCdv 57 (80)
|++-+|.+.+++|++..+..||+..... +..+.|+||+..|-.=++
T Consensus 2 ~~~~~~~~~~~~~~l~~~~~gc~~~~~~~~~~~~~vvA~Vn~~~It~~e~ 51 (336)
T PRK00059 2 KSIKKLVASLLVGVFIFSAVGCNMIEKTPEAIAKSTVATVNGEKITRGDL 51 (336)
T ss_pred chHHHHHHHHHHHHHHHhhccccccccCccccCCCceEEECCEEeCHHHH
Confidence 4566777777777776666777642222 334569999998865444
No 140
>PF05688 DUF824: Salmonella repeat of unknown function (DUF824); InterPro: IPR008542 This family consists of a series of repeated sequences (of around 180 residues) which are found in Salmonella typhimurium, Salmonella typhi and Escherichia coli. These repeats are almost always found with this entry. The repeats are associated with RatA and RatB, the coding sequences of which are found in the pathogeneicity island of Salmonella. The sequences may be determinants of pathogenicity [, ].
Probab=82.19 E-value=1.3 Score=26.61 Aligned_cols=27 Identities=26% Similarity=0.390 Sum_probs=23.3
Q ss_pred EEeecCCeEEEeeecCCCCCCCCceEE
Q psy531 43 ITALLGESVVFNCGVDFPGDTPVPYVL 69 (80)
Q Consensus 43 ltA~vGe~VVlnCdvdfP~~~PiPYVv 69 (80)
..||+||++.|.=.+-=-+|.|+||.-
T Consensus 7 akaK~Ge~I~ltVt~kda~G~pv~n~~ 33 (47)
T PF05688_consen 7 AKAKVGETIPLTVTVKDANGNPVPNAP 33 (47)
T ss_pred hheecCCeEEEEEEEECCCCCCcCCce
Confidence 469999999999888777999999863
No 141
>KOG4221|consensus
Probab=82.12 E-value=2.4 Score=39.93 Aligned_cols=37 Identities=24% Similarity=0.466 Sum_probs=30.7
Q ss_pred CcceEEeecCCeEEEeeecCCCCCCCCceEEEeeecccccC
Q psy531 39 NAVHITALLGESVVFNCGVDFPGDTPVPYVLQWEKKIVKNN 79 (80)
Q Consensus 39 ~P~~ltA~vGe~VVlnCdvdfP~~~PiPYVvqW~KdG~~~~ 79 (80)
+|+ .|--|.+|+|+|--.+-.+ .+|.++|.|||...+
T Consensus 47 ep~--d~~~~~svlLecs~~~~~~--~~~~i~wkkDg~~l~ 83 (1381)
T KOG4221|consen 47 EPS--DAMEGSSVLLECSAYAAGG--TSVKIEWKKDGSQLN 83 (1381)
T ss_pred ccc--ccccccceEEeccccccCC--CCeeEEEccCchhhh
Confidence 566 3478999999999988877 689999999998654
No 142
>cd05774 Ig_CEACAM_D1 First immunoglobulin (Ig)-like domain of carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM). IG_CEACAM_D1: immunoglobulin (Ig)-like domain 1 in carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) protein subfamily. The CEA family is a group of anchored or secreted glycoproteins, expressed by epithelial cells, leukocytes, endothelial cells and placenta. The CEA family is divided into the CEACAM and pregnancy-specific glycoprotein (PSG) subfamilies. This group represents the CEACAM subfamily. CEACAM1 has many important cellular functions, it is a cell adhesion molecule, and a signaling molecule that regulates the growth of tumor cells, it is an angiogenic factor, and is a receptor for bacterial and viral pathogens, including mouse hepatitis virus (MHV). In mice, four isoforms of CEACAM1 generated by alternative splicing have either two [D1, D4] or four [D1-D4] Ig-like domains on the cell surface. This family corresponds to the D
Probab=81.97 E-value=1.7 Score=28.56 Aligned_cols=29 Identities=21% Similarity=0.304 Sum_probs=22.0
Q ss_pred eEEeecCCeEEEeeecCCCCCCCCceEEEeeec
Q psy531 42 HITALLGESVVFNCGVDFPGDTPVPYVLQWEKK 74 (80)
Q Consensus 42 ~ltA~vGe~VVlnCdvdfP~~~PiPYVvqW~Kd 74 (80)
--.|.+|+.|+|.|+. +|.. .--+.|.|.
T Consensus 7 p~~~~~G~~V~L~v~~-~p~~---~~~~~W~kg 35 (105)
T cd05774 7 PPQVAEGENVLLLVHN-LPEN---LLAYAWYKG 35 (105)
T ss_pred CCcccCCCCEEEEecC-CCCC---ceEEEEEcC
Confidence 3347899999999987 6743 245899995
No 143
>cd07702 Ig2_VEGFR-1 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 1 (VEGFR-1). Ig2_VEGFR-1: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 1 (VEGFR-1). VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-1 binds VEGF-A strongly; VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-1 may play an inhibitory rolet in the function of VEGFR-2 by binding VEGF-A and interfering with its interaction with VEGFR-2. VEGFR-1 has a signaling role in mediating monocyte chemotaxis and may mediate a chemotactic and a survival signal in hematopoietic stem cells or leukemia cells.
Probab=81.59 E-value=1.1 Score=27.54 Aligned_cols=23 Identities=22% Similarity=0.316 Sum_probs=17.1
Q ss_pred EEeeecCCCCCCCCceEEEeeeccccc
Q psy531 52 VFNCGVDFPGDTPVPYVLQWEKKIVKN 78 (80)
Q Consensus 52 VlnCdvdfP~~~PiPYVvqW~KdG~~~ 78 (80)
-|-|.+. |.|.|- +.|.|+|.+.
T Consensus 2 ~l~c~v~---g~P~P~-v~W~kdg~~l 24 (72)
T cd07702 2 RLTPKVK---AFPAPE-VIWLKDGLPA 24 (72)
T ss_pred eEEeeEE---EcCCCe-EEEEECCEEC
Confidence 3667654 788887 5999999763
No 144
>cd00098 IgC Immunoglobulin Constant domain. IgC: Immunoglobulin constant domain (IgC). Members of the IgC family are components of immunoglobulin, T-cell receptors, CD1 cell surface glycoproteins, secretory glycoproteins A/C, and Major Histocompatibility Complex (MHC) class I/II molecules. In immunoglobulins, each chain is composed of one variable domain (IgV) and one or more IgC domains. These names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. The IgV domain is responsible for antigen binding, and the IgC domain is involved in oligomerization and molecular interactions.
Probab=80.36 E-value=1.6 Score=25.94 Aligned_cols=30 Identities=30% Similarity=0.452 Sum_probs=22.3
Q ss_pred ecCCeEEEeeecCCCCCC-CCceEEEeeeccccc
Q psy531 46 LLGESVVFNCGVDFPGDT-PVPYVLQWEKKIVKN 78 (80)
Q Consensus 46 ~vGe~VVlnCdvdfP~~~-PiPYVvqW~KdG~~~ 78 (80)
..|+.+.|.|.+. |- |.+--+.|.|+|.+.
T Consensus 11 ~~~~~~~L~C~a~---g~~P~~~~i~W~~~g~~~ 41 (95)
T cd00098 11 LLGGSVTLTCLAT---GFYPPDITVTWLKNGKEL 41 (95)
T ss_pred HcCCCeEEEEEEe---eEECCCcEEEEEECCEEC
Confidence 4689999999986 22 334569999998763
No 145
>PF07654 C1-set: Immunoglobulin C1-set domain; InterPro: IPR003597 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds. There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents C1-set domains, which are classical Ig-like domains resembling the antibody constant domain. C1-set domains are found almost exclusively in molecules involved in the immune system, such as in immunoglobulin light and heavy chains, in the major histocompatibility complex (MHC) class I and II complex molecules [, ], and in various T-cell receptors.; PDB: 3BVN_D 3BXN_A 3PWV_E 3L9R_F 2XFX_B 1BMG_A 1K8I_A 3M1B_G 3M17_C 1EXU_A ....
Probab=79.86 E-value=1.4 Score=26.55 Aligned_cols=28 Identities=36% Similarity=0.642 Sum_probs=22.1
Q ss_pred ecCCeEEEeeecC--CCCCCCCceEEEeeecccc
Q psy531 46 LLGESVVFNCGVD--FPGDTPVPYVLQWEKKIVK 77 (80)
Q Consensus 46 ~vGe~VVlnCdvd--fP~~~PiPYVvqW~KdG~~ 77 (80)
..|+.+.|.|.+. ||.+ --|.|.|+|.+
T Consensus 6 ~~~~~~~L~C~v~~f~P~~----i~v~W~~~~~~ 35 (83)
T PF07654_consen 6 ELGGSVTLTCLVSGFYPKD----ITVTWLKNGKE 35 (83)
T ss_dssp HSTSEEEEEEEEEEEBSST----EEEEEEETTEE
T ss_pred cCCCCEEEEEEEEEEECCC----cEEEEEeccce
Confidence 3499999999997 6743 35899999875
No 146
>KOG3513|consensus
Probab=78.25 E-value=1.9 Score=39.44 Aligned_cols=37 Identities=19% Similarity=0.413 Sum_probs=30.9
Q ss_pred CcceEEeecCCeEEEeeecCCCCCCCCceEEEeeecccc
Q psy531 39 NAVHITALLGESVVFNCGVDFPGDTPVPYVLQWEKKIVK 77 (80)
Q Consensus 39 ~P~~ltA~vGe~VVlnCdvdfP~~~PiPYVvqW~KdG~~ 77 (80)
.|....-++|++|+|.|...|-..-.++| .|.++|.+
T Consensus 522 ~P~~~~v~~g~~v~l~Ce~shD~~ld~~f--~W~~nG~~ 558 (1051)
T KOG3513|consen 522 APSNTDVKVGESVTLTCEASHDPSLDITF--TWKKNGRP 558 (1051)
T ss_pred ccchhhhccCceEEEEeecccCCCcceEE--EEEECCEE
Confidence 56777789999999999999886666665 89999974
No 147
>cd05771 IgC_Tapasin_R Tapasin-R immunoglobulin-like domain. IgC_Tapasin_R: Immunoglobulin-like domain on Tapasin-R. Tapasin is a V-C1 (variable-constant) immunoglobulin superfamily molecule present in the endoplasmic reticulum (ER), where it links MHC class I molecules to the transporter associated with antigen processing (TAP). Tapasin-R is a tapasin-related protein that contains similar structural motifs to Tapasin, with some marked differences, especially in the V domain, transmembrane and cytoplasmic regions. The majority of Tapasin-R is located within the ER; however, there may be some expression of Tapasin-R at the cell surface. Tapasin-R lacks an obvious ER retention signal.
Probab=78.24 E-value=4.6 Score=26.28 Aligned_cols=29 Identities=17% Similarity=0.468 Sum_probs=21.4
Q ss_pred cCCeEEEeeecCCCCCCCCceEEEeeecccc
Q psy531 47 LGESVVFNCGVDFPGDTPVPYVLQWEKKIVK 77 (80)
Q Consensus 47 vGe~VVlnCdvdfP~~~PiPYVvqW~KdG~~ 77 (80)
.|+.+.|.|.+. ...|.+=-+.|.|+|.+
T Consensus 52 ~~~~~~L~C~a~--g~~P~~~~i~W~~~g~~ 80 (139)
T cd05771 52 IEEPQTLICHIA--GYYPLDVQVEWTREPPG 80 (139)
T ss_pred cCCcEEEEEEEC--CCCCCCeEEEEEECCCC
Confidence 688999999995 22333446999999864
No 148
>cd07692 Ig_CD3_epsilon Immunoglobulin (Ig)-like domain of CD3 epsilon chain. Ig_CD3_epsilon; immunoglobulin (Ig)-like domain of CD3 epsilon chain. CD3 is a T cell surface receptor that is associated with alpha/beta T cell receptors (TCRs). The CD3 complex consists of one gamma, one delta, two epsilon, and two zeta chains. The CD3 subunits form heterodimers as gamma/epsilon, delta/epsilon, and zeta/zeta. The gamma, delta, and epsilon chains each contain an extracellular Ig domain, whereas the extracellular domains of the zeta chains are very small and have unknown structure. The CD3 domain participates in intracellular signalling once the TCR has bound an MHC/antigen complex.
Probab=77.72 E-value=2.9 Score=26.63 Aligned_cols=25 Identities=24% Similarity=0.549 Sum_probs=19.2
Q ss_pred ecCCeEEEeeecCCCCCCCCceEEEeeecccc
Q psy531 46 LLGESVVFNCGVDFPGDTPVPYVLQWEKKIVK 77 (80)
Q Consensus 46 ~vGe~VVlnCdvdfP~~~PiPYVvqW~KdG~~ 77 (80)
.-|.+|+|.|+.+. +. ++|.|++..
T Consensus 5 isGTtVtlTCP~~~--~~-----i~W~~n~~~ 29 (65)
T cd07692 5 ISGTTVTVTCPLSG--DD-----IKWKKNDQV 29 (65)
T ss_pred EeccEEEEECCCCC--CC-----ceEEeCCcc
Confidence 45899999999773 22 799999743
No 149
>PF15183 MRAP: Melanocortin-2 receptor accessory protein family
Probab=75.20 E-value=4.1 Score=27.95 Aligned_cols=34 Identities=21% Similarity=0.464 Sum_probs=24.3
Q ss_pred cchhhhhHhhhchhHHHHHHHHHHHHhhccCCCCCCCCcce
Q psy531 2 GMWLNLAFLETNLHHISLQVLLIITLVHFKGVSPDISNAVH 42 (80)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~ll~i~l~~~sg~~g~~~~P~~ 42 (80)
|.|..||. ..+.+|+|+++++-||++..+..+.+
T Consensus 41 ~FWv~LA~-------FV~~lF~iL~~ms~sgspq~~~~~k~ 74 (90)
T PF15183_consen 41 AFWVSLAA-------FVVFLFLILLYMSWSGSPQMRNSEKH 74 (90)
T ss_pred hHHHHHHH-------HHHHHHHHHHHHhccCCCCcCCcccc
Confidence 56777764 35678899999999999865544443
No 150
>PF13473 Cupredoxin_1: Cupredoxin-like domain; PDB: 1IBZ_D 1IC0_E 1IBY_D.
Probab=70.99 E-value=3.7 Score=25.98 Aligned_cols=16 Identities=25% Similarity=0.372 Sum_probs=11.2
Q ss_pred CcceEEeecCCeEEEe
Q psy531 39 NAVHITALLGESVVFN 54 (80)
Q Consensus 39 ~P~~ltA~vGe~VVln 54 (80)
+|..++++.|+.|.+.
T Consensus 33 ~P~~i~v~~G~~v~l~ 48 (104)
T PF13473_consen 33 SPSTITVKAGQPVTLT 48 (104)
T ss_dssp ES-EEEEETTCEEEEE
T ss_pred ecCEEEEcCCCeEEEE
Confidence 7888889999955443
No 151
>cd05759 Ig2_KIRREL3-like Second immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2). Ig2_KIRREL3-like: domain similar to the second immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1), Kirrel2 (Neph3), and Drosophila RST (irregular chiasm C-roughest) protein. These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development.
Probab=70.38 E-value=4.8 Score=23.77 Aligned_cols=23 Identities=13% Similarity=0.287 Sum_probs=16.6
Q ss_pred EEEeeecC-CCCCCCCceEEEeeecccc
Q psy531 51 VVFNCGVD-FPGDTPVPYVLQWEKKIVK 77 (80)
Q Consensus 51 VVlnCdvd-fP~~~PiPYVvqW~KdG~~ 77 (80)
+.|.|.+. | .|.| .+.|.|+|++
T Consensus 2 ~~L~C~v~g~---~P~~-~v~W~~~g~~ 25 (82)
T cd05759 2 YNLTCRARGA---KPAA-EIIWFRDGEV 25 (82)
T ss_pred EEEEEEEeCc---cCCC-EEEEEECCEE
Confidence 56889884 2 3445 5999999875
No 152
>cd05755 Ig2_ICAM-1_like Second immunoglobulin (Ig)-like domain of intercellular cell adhesion molecule-1 (ICAM-1, CD54) and similar proteins. Ig2_ ICAM-1_like: domain similar to the second immunoglobulin (Ig)-like domain of intercellular cell adhesion molecule-1 (ICAM-1, CD54). During the inflammation process, these molecules recruit leukocytes onto the vascular endothelium before extravasation to the injured tissues. ICAM-1 may be involved in organ targeted tumor metastasis. The interaction of ICAM-1 with leukocyte function-associated antigen-1 (LFA-1) plays a part in leukocyte-endothelial cell recognition. This group also contains ICAM-2, which also interacts with LFA-1. Transmigration of immature dendritic cells across resting endothelium is dependent on the interaction of ICAM-2 with, yet unidentified, ligand(s) on the dendritic cells. ICAM-1 has five Ig-like domains and ICAM-2 has two. ICAM-1 may also act as host receptor for viruses and parasites.
Probab=70.02 E-value=6.5 Score=26.07 Aligned_cols=31 Identities=16% Similarity=0.300 Sum_probs=26.1
Q ss_pred eecCCeEEEeeecCCCCCCCCceE-EEeeecccc
Q psy531 45 ALLGESVVFNCGVDFPGDTPVPYV-LQWEKKIVK 77 (80)
Q Consensus 45 A~vGe~VVlnCdvdfP~~~PiPYV-vqW~KdG~~ 77 (80)
..+|+.+-|.|.+. .+.|.+.+ |.|.|.+..
T Consensus 13 ~~eG~~~tL~C~v~--g~~P~a~L~i~W~rG~~~ 44 (100)
T cd05755 13 QPVGKNYTLQCDVP--GVAPRQNLTVVLLRGNET 44 (100)
T ss_pred ccCCCcEEEEEEEc--CcCCCCcEEEEEeeCCEE
Confidence 58999999999984 67888886 899998754
No 153
>cd05767 IgC_MHC_II_alpha Class II major histocompatibility complex (MHC) alpha chain immunoglobulin domain. IgC_MHC_II_alpha: Immunoglobulin (Ig) domain of major histocompatibility complex (MHC) class II alpha chain. MHC class II molecules play a key role in the initiation of the antigen-specific immune reponse. In both humans and in mice these molecules have been shown to be expressed constitutively on the cell surface of professional antigen-presenting cells (APCs), for example on B-lymphocytes, monocytes, and macrophages. The expression of these molecules has been shown to be induced in nonprofessional APCs such as keratinocyctes, and they are expressed on the surface of activated human T cells and on T cells from other species. The MHC II molecules present antigenic peptides to CD4(+) T-lymphocytes. These peptides derive mostly from protelytic processing via the endocytic pathway, of antigens internalized by the APC. These peptides bind to the MHC class II molecules in the endosom
Probab=69.23 E-value=5.2 Score=25.74 Aligned_cols=29 Identities=38% Similarity=0.523 Sum_probs=22.2
Q ss_pred eecCCeEEEeeecC--CCCCCCCceEEEeeecccc
Q psy531 45 ALLGESVVFNCGVD--FPGDTPVPYVLQWEKKIVK 77 (80)
Q Consensus 45 A~vGe~VVlnCdvd--fP~~~PiPYVvqW~KdG~~ 77 (80)
+..|+.+.|.|.+. ||.+. -|+|.|+|.+
T Consensus 12 ~~~~~~~tL~C~a~gFyP~~I----~v~W~~~g~~ 42 (94)
T cd05767 12 VELGEPNTLICFVDNFFPPVL----NVTWLKNGVP 42 (94)
T ss_pred ccCCCCeEEEEEEEEEECCcC----EEEEEECCeE
Confidence 34577789999996 77443 4899999976
No 154
>cd04985 IgC_CH1 CH1 domain (first constant Ig domain of the heavy chain) in immunoglobulin. IgC_CH1: The first immunoglobulin constant domain (IgC), of immunoglobulin (Ig) heavy chains. This domain is found on the Fab antigen-binding fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.
Probab=68.48 E-value=6.1 Score=25.31 Aligned_cols=26 Identities=19% Similarity=0.482 Sum_probs=20.0
Q ss_pred CCeEEEeeecC--CCCCCCCceEEEeeecccc
Q psy531 48 GESVVFNCGVD--FPGDTPVPYVLQWEKKIVK 77 (80)
Q Consensus 48 Ge~VVlnCdvd--fP~~~PiPYVvqW~KdG~~ 77 (80)
++.|.|.|.+. ||.+ --|.|.|+|.+
T Consensus 16 ~~~~~L~C~a~gFyP~~----i~vtW~k~g~~ 43 (95)
T cd04985 16 SDSVTLGCLATGFLPEP----VTFTWNSGSNS 43 (95)
T ss_pred CCcEEEEEEEeeEECCC----cEEEEeECCEE
Confidence 56689999985 6642 46899999986
No 155
>PF08940 DUF1918: Domain of unknown function (DUF1918); InterPro: IPR015035 This domain is found in various hypothetical bacterial proteins, and has no known function. ; PDB: 2A7Y_A.
Probab=67.34 E-value=3.1 Score=26.32 Aligned_cols=19 Identities=21% Similarity=0.590 Sum_probs=11.8
Q ss_pred CCCCCCCCceEEEeeecccc
Q psy531 58 DFPGDTPVPYVLQWEKKIVK 77 (80)
Q Consensus 58 dfP~~~PiPYVvqW~KdG~~ 77 (80)
--+.| -+||+|.|..+|..
T Consensus 29 ~g~dG-~PPY~VRw~D~Ghe 47 (58)
T PF08940_consen 29 RGPDG-SPPYLVRWDDTGHE 47 (58)
T ss_dssp S-SSS--S-EEEEETTTTEE
T ss_pred ECCCC-CCCEEEEecCCCcE
Confidence 34544 46899999987764
No 156
>cd05897 Ig2_IL1R2_like Second immunoglobulin (Ig)-like domain of interleukin-1 receptor-2 (IL1R2). Ig2_IL1R2_like: domain similar to the second immunoglobulin (Ig)-like domain of interleukin-1 receptor-2 (IL1R2). IL-1 alpha and IL-1 beta are cytokines which participate in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds the type II (IL1R2) represented in this group. Mature IL1R2 consists of three IG-like domains, a transmembrane domain, and a short cytoplasmic domain. It lacks the large cytoplasmic domain of Mature IL1R1, and does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of IL-1 alpha and IL-1 beta.
Probab=66.67 E-value=5.6 Score=25.90 Aligned_cols=30 Identities=30% Similarity=0.357 Sum_probs=22.2
Q ss_pred eecCCeEEEeeec--CC--CCCCCCceEEEeeecccc
Q psy531 45 ALLGESVVFNCGV--DF--PGDTPVPYVLQWEKKIVK 77 (80)
Q Consensus 45 A~vGe~VVlnCdv--df--P~~~PiPYVvqW~KdG~~ 77 (80)
+.+|.+..|.|.- +| +... .-++|.||+.+
T Consensus 7 ~~~~~~~~l~Cp~~~~f~~~~~~---~~v~WYKd~~~ 40 (95)
T cd05897 7 LFTSTSGKLVCPDLSDFTINRTD---VELQWYKDSVL 40 (95)
T ss_pred eccccCcEEECCCHHHcccCCCC---CcEEEccCCEE
Confidence 5688999999964 55 3322 35999999975
No 157
>KOG4221|consensus
Probab=65.99 E-value=8.4 Score=36.49 Aligned_cols=38 Identities=29% Similarity=0.524 Sum_probs=31.7
Q ss_pred CCCCcceEEeecCCeEEEeeecCCCCCCCCceEEEeeecccc
Q psy531 36 DISNAVHITALLGESVVFNCGVDFPGDTPVPYVLQWEKKIVK 77 (80)
Q Consensus 36 ~~~~P~~ltA~vGe~VVlnCdvdfP~~~PiPYVvqW~KdG~~ 77 (80)
-.+.|+..+.-.|+.|.|+|+|.- .|.| .++|.|+..+
T Consensus 143 f~~~~~~~t~~~g~ta~f~c~vn~---e~~p-~i~w~kn~~p 180 (1381)
T KOG4221|consen 143 FALQPESTTLLYGQTALFSCEVNA---EPVP-TIMWLKNDQP 180 (1381)
T ss_pred cccCccceeEecCCcEEEEEEEcC---ccCc-eeEEeccccc
Confidence 356888899999999999998875 6667 7999999764
No 158
>cd05887 Ig1_Nectin-3_like First immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3) and similar proteins. Ig1_Nectin-3_like: domain similar to the first immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3). Nectin-3 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through -4). Nectins are synaptic cell adhesion molecules (CAMs) which participate in adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. For example, during spermatid development, the nectin-3,-2 trans-interaction is required for the formation of Sertoli cell-spermatid junctions in testis, and during morphogenesis of the ciliary body, the nectin-3,-1 trans-interaction is important for apex-apex adhesion between the pigment and non-pigment layers of the ciliary epithelia. Nectins also
Probab=65.23 E-value=8.1 Score=25.12 Aligned_cols=23 Identities=22% Similarity=0.419 Sum_probs=17.7
Q ss_pred eEEEeeecCCCCCCCCceEEEeeecc
Q psy531 50 SVVFNCGVDFPGDTPVPYVLQWEKKI 75 (80)
Q Consensus 50 ~VVlnCdvdfP~~~PiPYVvqW~KdG 75 (80)
.|.|.|.+..+. .-+.|+|.|..
T Consensus 2 ~vtL~C~~~~~~---~~~qV~W~k~~ 24 (96)
T cd05887 2 NVTLKCRIQVNE---TITQSSWEKIH 24 (96)
T ss_pred CEEEEEEecCCC---cEEEEEEEEcC
Confidence 589999988653 23789999974
No 159
>cd05761 Ig2_Necl-1-4_like Second immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 - Necl-4 (also known as cell adhesion molecules CADM3, CADM1, CADM2, and CADM4, respectively). Ig2_Necl-1-4_like: domain similar to the second immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 (also known as cell adhesion molecule 3 (CADM3)), Necl-2 (CADM1), Necl-3 (CADM2) and Necl-4 (CADM4). These nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1 and Necl-2 have Ca(2+)-independent homophilic and heterophilic cell-cel
Probab=64.48 E-value=10 Score=22.87 Aligned_cols=24 Identities=25% Similarity=0.576 Sum_probs=17.5
Q ss_pred EEEeeecCCCCCCCCceEEEeeecccc
Q psy531 51 VVFNCGVDFPGDTPVPYVLQWEKKIVK 77 (80)
Q Consensus 51 VVlnCdvdfP~~~PiPYVvqW~KdG~~ 77 (80)
|.|.|.+ -.+.|.| -|.|.|+|.+
T Consensus 2 ~~L~C~~--~~~~P~~-~v~W~~~~~~ 25 (82)
T cd05761 2 VELTCTS--SGSKPAA-TIRWFKGDKE 25 (82)
T ss_pred EEEEEEe--cCcCcCC-eEEEEECCEE
Confidence 6788988 2344556 7999999875
No 160
>cd05772 IgC_SIRP Signal-regulatory protein (SIRP) immunoglobulin-like domain. IgC_SIRP: Immunoglobulin-like domain of signal-regulatory proteins (SIRP); the signal-regulatory proteins (SIRP) are Ig-like cell surface receptors detected in hematopoietic and non-hematopoietic cells. While their extracellular domains are similar, SIRP are classified as alpha or beta based on the length of the intracytoplasmic domain. Those having a 110- to 113-amino acid tail are classified as SIRP-alpha, and those having a 5-amino acid tail as SIRP-beta. SIRP-alpha and SIRP-beta molecules are thought to have complementary roles in signal regulation: SIRP-alpha inhibit signalling via their immunoreceptor tyrosine (IT)-based inhibition motifs while SIRP-beta are activating. SIRP-beta lack the cytoplasmic domainof SIRP-alpha, and associate with at least one other transmembrane protein (DAP-12 or KARAP). The IT-based activation motifs within DAP-12's cytoplasmic domain may link SIRP-beta to the activating
Probab=59.62 E-value=9.4 Score=25.21 Aligned_cols=29 Identities=31% Similarity=0.510 Sum_probs=22.0
Q ss_pred eecCCeEEEeeecC--CCCCCCCceEEEeeecccc
Q psy531 45 ALLGESVVFNCGVD--FPGDTPVPYVLQWEKKIVK 77 (80)
Q Consensus 45 A~vGe~VVlnCdvd--fP~~~PiPYVvqW~KdG~~ 77 (80)
...|+.+.|.|.+. ||. .--|+|.|+|.+
T Consensus 18 ~~~g~~~tL~C~a~gF~P~----~i~v~W~kng~~ 48 (111)
T cd05772 18 ANPGQSVNFTCSAHGFSPR----DITVKWLKNGNE 48 (111)
T ss_pred cCCCCCEEEEEEEeeEeCC----CCEEEEEECCEE
Confidence 44688899999886 452 345999999976
No 161
>PRK10894 lipopolysaccharide transport periplasmic protein LptA; Provisional
Probab=59.48 E-value=12 Score=26.35 Aligned_cols=46 Identities=20% Similarity=0.260 Sum_probs=25.4
Q ss_pred chhHHHHHHHHHHHHhhcc--CCCCCCCCcceEEeec------CCeEEEeeecC
Q psy531 13 NLHHISLQVLLIITLVHFK--GVSPDISNAVHITALL------GESVVFNCGVD 58 (80)
Q Consensus 13 ~~~~~~~~~ll~i~l~~~s--g~~g~~~~P~~ltA~v------Ge~VVlnCdvd 58 (80)
|--|+.+++++++++++.+ ....+...|.+++|.- ++.++|.=+|.
T Consensus 2 ~~~~~~~~~~~~ll~~~~~a~A~~~d~~~pI~I~AD~~~~~~~~~~~~~tGnV~ 55 (180)
T PRK10894 2 NKLSLNLLLASSLLAASIPAFALTGDTDQPIHIDSDQQSLDMQGNVVTFTGNVV 55 (180)
T ss_pred cchHHHHHHHHHHHHHHHHHhhcccccCCCEEEEeCceEeeccCCEEEEEeeEE
Confidence 3344555555555554322 3345678899988653 34455554443
No 162
>cd07691 Ig_CD3_gamma_delta Immunoglobulin (Ig)-like domain of CD3 gamma and delta chains. Ig_CD3_gamma_delta; immunoglobulin (Ig)-like domain of CD3 gamma and delta chains. CD3 is a T cell surface receptor that is associated with alpha/beta T cell receptors (TCRs). The CD3 complex consists of one gamma, one delta, two epsilon, and two zeta chains. The CD3 subunits form heterodimers as gamma/epsilon, delta/epsilon, and zeta/zeta. The gamma, delta, and epsilon chains each contain an extracellular Ig domain, whereas the extracellular domains of the zeta chains are very small and have unknown structure. The CD3 domain participates in intracellular signalling once the TCR has bound an MHC/antigen complex.
Probab=59.03 E-value=11 Score=24.41 Aligned_cols=21 Identities=19% Similarity=0.425 Sum_probs=15.8
Q ss_pred cCCeEEEeeecCCCCCCCCceEEEeeeccc
Q psy531 47 LGESVVFNCGVDFPGDTPVPYVLQWEKKIV 76 (80)
Q Consensus 47 vGe~VVlnCdvdfP~~~PiPYVvqW~KdG~ 76 (80)
..++|.|.|+++ .+ +.|+| |.
T Consensus 5 ~~~~V~L~C~~~---ts-----i~W~k-G~ 25 (69)
T cd07691 5 SEGKVFLKCNGA---TN-----ITWKK-GK 25 (69)
T ss_pred cCceEEEEecCC---Cc-----EEEec-Cc
Confidence 357899999885 23 89999 54
No 163
>PF03921 ICAM_N: Intercellular adhesion molecule (ICAM), N-terminal domain; InterPro: IPR013768 Intercellular adhesion molecules (ICAMs) and vascular cell adhesion molecule-1 (VCAM-1) are part of the immunoglobulin superfamily. They are important in inflammation, immune responses and in intracellular signalling events []. The ICAM family consists of five members, designated ICAM-1 to ICAM-5. They are known to bind to leucocyte integrins CD11/CD18 during inflammation and in immune responses. In addition, ICAMs may exist in soluble forms in human plasma, due to activation and proteolysis mechanisms at cell surfaces. ICAM-1 (CD54) contains five Ig-like domains. It is expressed on leucocytes, endothelial and epithelial cells, and is upregulated in response to bacterial invasion. The protein is a ligand for lymphocyte-function associated (LFA) antigens and also a receptor for CD11a,b/CD18, fibrinogen, human rhinovirus and Plasmodium falciparum-infected erythrocytes. ICAM-1 binding sites for CD11a/CD18 and its other binding partners are located in the first domain and are overlapping. ICAM-1 domain 2 seems to play an important role in maintaining the conformation of domain 1 and particularly the structural integrity of the LFA-1 ligand-binding site []. The 3-dimensional atomic structure of the tandem N-terminal Ig-like domains (D1 and D2) of ICAM-1 has been determined to 2.2A resolution and fitted into a cryoelectron microscopy reconstruction of a rhinovirus-ICAM-1 complex []. Extensive charge interactions between ICAM-1 and human rhinovirusesare largely conserved in major and minor receptor groups of rhinoviruses. The interaction of ICAMs with LFA-1 is mediated by a divalent cation bound to the insertion (I)-domain on the alpha chain of LFA-1 and the carboxyl group of a conserved glutamic acid residue on ICAMs. ICAM-2 (CD102) has two Ig-like domains. It is expressed on endothelial cells, leucocytes and platelets, and binds to CD11a'b/CD18. The protein is refractory to proinflammatory cytokines, and plays an important role in the adhesion of leucocytes to the uninduced endothelium []. ICAM-3 (CD50) contains five Ig-like domains and binds to leucocyte integrins CD11a'd/CD18. The protein plays an important role in the immune response and perhaps in signal transduction []. ICAM-4 (LW blood group Ag) is red blood cell (RBC) specific and binds to CD11a'b/CD18. It is associated with the RBC Rh antigens and could be important in retaining immature red cells in the bone marrow, or in the uptake of senescent cells into the spleen []. ICAM-5 (telencephalin) has nine Ig-like domains and is confined to the telencephalon of the brain. The role of this CD11a/CD18 binding molecule is not yet known []. VCAM-1 was first described as a cytokine-inducible endothelial adhesion molecule. It can bind to leucocyte integrin VL-4 (very late antigen-4) to recruit leucocytes to sites of inflammation []. The predominant form of VCAM-1 in vivo has an N-terminal extracellular region comprising seven Ig-like domains []. A conserved integrin-binding motif has been identified in domains 1 and 4, variants of which are present in the N-terminal domain of all members of the integrin-binding subgroup of the immunoglobulin superfamily. The structure of a VLA-4-binding fragment comprising the first two domains of VCAM-1 has been determined to 1.8A resolution. The integrin-binding motif is exposed and forms the N-terminal region of the loop between beta-strands C and D of domain 1 []. VCAM-1 domains 1 and 2 are structurally similar to ICAM-1 and ICAM-2 []. This entry represents the N-terminal domain of ICAM proteins such as ICAM-2, ICAM-3 and ICAM-4.; PDB: 3BN3_B 1T0P_B 1ZXQ_A 3TCX_A 1MQ8_A 1Z7Z_I 1IC1_A 1IAM_A.
Probab=57.94 E-value=8.1 Score=25.69 Aligned_cols=25 Identities=24% Similarity=0.270 Sum_probs=21.1
Q ss_pred CCCcceEEeecCCeEEEeeecCCCC
Q psy531 37 ISNAVHITALLGESVVFNCGVDFPG 61 (80)
Q Consensus 37 ~~~P~~ltA~vGe~VVlnCdvdfP~ 61 (80)
+-.|+...-+.|++|.+||--+=|+
T Consensus 7 ~v~P~~~vV~~G~Sv~VNCStsC~~ 31 (91)
T PF03921_consen 7 RVSPEEPVVPPGGSVWVNCSTSCPQ 31 (91)
T ss_dssp EEESSEEEEETTEEEEEEEEESSSS
T ss_pred EEECCccEECCCCCEEEEEcCCCCC
Confidence 4478888899999999999887664
No 164
>PF08204 V-set_CD47: CD47 immunoglobulin-like domain; InterPro: IPR013270 This family represents the CD47 leukocyte antigen V-set like Ig domain [, ].; PDB: 2VSC_B 2JJS_D 2JJT_C.
Probab=52.93 E-value=16 Score=25.75 Aligned_cols=34 Identities=18% Similarity=0.307 Sum_probs=20.3
Q ss_pred EeecCCeEEEeeecCC-CCCCCCceEEEeeecccc
Q psy531 44 TALLGESVVFNCGVDF-PGDTPVPYVLQWEKKIVK 77 (80)
Q Consensus 44 tA~vGe~VVlnCdvdf-P~~~PiPYVvqW~KdG~~ 77 (80)
.+.-.+.|+++|.|+- +...-.=..|+|..+|.+
T Consensus 23 ~t~CN~tV~IPC~v~n~~~~ni~~m~VkWk~~~~~ 57 (130)
T PF08204_consen 23 YTVCNDTVVIPCFVNNLEANNISEMYVKWKFKNKD 57 (130)
T ss_dssp E-TT-SEEEE--BBSS---SSGGGEEEEEEETTEE
T ss_pred EEecCCCEEEEeEeccccccccceEEEEEEECCeE
Confidence 3788999999999964 322222366999998864
No 165
>cd05886 Ig1_Nectin-1_like First immunoglobulin (Ig) domain of nectin-1 (also known as poliovirus receptor related protein 1, or as CD111) and similar proteins. Ig1_Nectin-1_like: domain similar to the first immunoglobulin (Ig) domain of nectin-1 (also known as poliovirus receptor related protein 1, or as CD111). Nectin-1 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through -4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. In addition nectins heterophilically trans-interact with other CAMs such as nectin-like molecules (Necls), nectin-1 for example, has been shown to trans-interact with Necl-1. Nectins also interact with various other proteins, including the actin filament (F-actin)-binding protein, afadin. Mutation in the human nectin-1 gene is
Probab=52.75 E-value=21 Score=23.03 Aligned_cols=25 Identities=24% Similarity=0.368 Sum_probs=17.2
Q ss_pred eEEEeeecCCCCCCCCceEEEeeec
Q psy531 50 SVVFNCGVDFPGDTPVPYVLQWEKK 74 (80)
Q Consensus 50 ~VVlnCdvdfP~~~PiPYVvqW~Kd 74 (80)
.|.|.|.+..+....-..-|+|.|.
T Consensus 2 ~v~L~C~f~~~~~~~~~~~V~W~k~ 26 (99)
T cd05886 2 DVVLHCSFINPLPPVKITQVTWQKL 26 (99)
T ss_pred cEEEEeEeecCCCCCCeEEEEEEEC
Confidence 5899999986532212246999986
No 166
>PF12028 DUF3515: Protein of unknown function (DUF3515); InterPro: IPR021903 This family of proteins is functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 166 to 214 amino acids in length. This protein has a conserved RCG sequence motif.
Probab=50.18 E-value=16 Score=26.09 Aligned_cols=30 Identities=33% Similarity=0.546 Sum_probs=18.5
Q ss_pred CCeEEEeeecCCCCC---CCCceE---EEeeecccc
Q psy531 48 GESVVFNCGVDFPGD---TPVPYV---LQWEKKIVK 77 (80)
Q Consensus 48 Ge~VVlnCdvdfP~~---~PiPYV---vqW~KdG~~ 77 (80)
++.|+|+|-|+.|.. ...... |+|+.+...
T Consensus 78 ~~~vvlRCGV~~P~~~~~~~~~~~VngV~W~~~~~~ 113 (163)
T PF12028_consen 78 GEPVVLRCGVPRPAPYTPTSPCQQVNGVDWFEDEDD 113 (163)
T ss_pred CCcEEEECCCCCCCCCCCCCcceEECCCceEEeccC
Confidence 356999999999953 111111 578776543
No 167
>TIGR02925 cis_trans_EpsD peptidyl-prolyl cis-trans isomerase, EpsD family. Members of this family belong to the peptidyl-prolyl cis-trans isomerase family and are found in loci associated with exopolysaccharide biosynthesis. All members are encoded near a homolog of EpsH, as detected by TIGR02602.
Probab=50.04 E-value=35 Score=24.01 Aligned_cols=19 Identities=11% Similarity=0.088 Sum_probs=14.1
Q ss_pred cceEEeecCCeEEEeeecC
Q psy531 40 AVHITALLGESVVFNCGVD 58 (80)
Q Consensus 40 P~~ltA~vGe~VVlnCdvd 58 (80)
...+-|+||+.+|-.=+++
T Consensus 25 ~~~vvA~Vng~~It~~dl~ 43 (232)
T TIGR02925 25 ASQVAAKVNGVEISVHQLN 43 (232)
T ss_pred CCCeeEEECCEEeCHHHHH
Confidence 4556699999998766554
No 168
>cd07697 IgC_TCR_gamma T cell receptor (TCR) gamma chain constant immunoglobulin domain. IgC_TCR_gamma; immunoglobulin (Ig) constant (C) domain of the gamma chain of gamma-delta T-cell receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are heterodimers consisting of alpha and beta chains or gamma and delta chains. Each chain contains a variable (V) and a constant (C) region. The majority of T cells contain alpha-beta TCRs but a small subset contain gamma-delta TCRs. Alpha-beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. Gamma-delta TCRs recognize intact protein antigens; they recognize protein antigens directly and without antigen processing, and MHC independently of the bound peptide. Gamma-delta T cells can also be stimulated by non-peptide antigens such as small phosphate- or amine-containing compounds.
Probab=49.39 E-value=19 Score=23.31 Aligned_cols=26 Identities=15% Similarity=0.447 Sum_probs=20.0
Q ss_pred CCeEEEeeecC--CCCCCCCceEEEeeecccc
Q psy531 48 GESVVFNCGVD--FPGDTPVPYVLQWEKKIVK 77 (80)
Q Consensus 48 Ge~VVlnCdvd--fP~~~PiPYVvqW~KdG~~ 77 (80)
|+.+.|.|.+. ||.+ --|.|.|+|.+
T Consensus 16 ~~~~tL~C~a~gFyP~~----I~v~W~kng~~ 43 (96)
T cd07697 16 QGQGIYLCLLENFFPDV----IQVHWREGNSP 43 (96)
T ss_pred CCCEEEEEEEEEEeCCC----eEEEEEECCEE
Confidence 56789999986 6632 34899999976
No 169
>cd05768 IgC_CH4 CH4 domain (fourth constant Ig domain of the heavy chain) in immunoglobulin. IgC_CH4: The fourth immunoglobulin constant domain (IgC), of immunoglobulin (Ig) heavy chains. This domain is found on the Fc fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.
Probab=47.96 E-value=19 Score=23.17 Aligned_cols=28 Identities=21% Similarity=0.405 Sum_probs=21.5
Q ss_pred ecCCeEEEeeecC--CCCCCCCceEEEeeecccc
Q psy531 46 LLGESVVFNCGVD--FPGDTPVPYVLQWEKKIVK 77 (80)
Q Consensus 46 ~vGe~VVlnCdvd--fP~~~PiPYVvqW~KdG~~ 77 (80)
..|+.+.|.|.+. ||. ..-|.|.|+|++
T Consensus 14 ~~~~~~tL~C~a~gFyP~----~i~v~W~k~g~~ 43 (102)
T cd05768 14 SLQETATLTCLVKGFSPS----DIFVKWLQNGQP 43 (102)
T ss_pred CcCCceEEEEEEeeEeCC----CCEEEEEECCEE
Confidence 3478899999995 553 346999999875
No 170
>cd05889 Ig1_DNAM-1_like First immunoglobulin (Ig) domain of DNAX accessory molecule 1 (DNAM-1, also known as CD226) and similar proteins. Ig1_DNAM-1_like: domain similar to the first immunoglobulin (Ig) domain of DNAX accessory molecule 1 (DNAM-1, also known as CD226). DNAM-1 is a transmembrane protein having two Ig-like domains. It is an adhesion molecule which plays a part in tumor-directed cytotoxicity and adhesion in natural killer (NK) cells and T lymphocytes. It has been shown to regulate the NK cell killing of several tumor types, including myeloma cells and ovarian carcinoma cells. DNAM-1 interacts specifically with poliovirus receptor (PVR; CD155) and nectin -2 (CD211), other members of the Ig superfamily. DNAM-1 is expressed in most peripheral T cells, NK cells, monocytes and a subset of B lymphocytes.
Probab=47.71 E-value=26 Score=22.63 Aligned_cols=24 Identities=25% Similarity=0.450 Sum_probs=17.2
Q ss_pred CeEEEeeecCCCCCCCCceEEEeeecc
Q psy531 49 ESVVFNCGVDFPGDTPVPYVLQWEKKI 75 (80)
Q Consensus 49 e~VVlnCdvdfP~~~PiPYVvqW~KdG 75 (80)
|.|.|.|...-+. .-.-|+|.|..
T Consensus 1 ~~vtL~C~~~~~~---~~~qV~W~k~~ 24 (96)
T cd05889 1 EKMKLECVYPKTG---VLIQVSWTKHN 24 (96)
T ss_pred CCEEEEeEcCCCC---cEEEEEEEEcC
Confidence 5689999986543 23567899974
No 171
>cd07696 IgC_CH3 CH3 domain (third constant Ig domain of the heavy chain) in immunoglobulin. IgC_CH3: The third immunoglobulin constant domain (IgC) of immunoglobulin (Ig) heavy chains. This domain is found on the Fc fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.
Probab=47.63 E-value=25 Score=22.49 Aligned_cols=27 Identities=30% Similarity=0.452 Sum_probs=20.1
Q ss_pred ecCCeEEEeeecC---CCCCCCCceEEEeeeccc
Q psy531 46 LLGESVVFNCGVD---FPGDTPVPYVLQWEKKIV 76 (80)
Q Consensus 46 ~vGe~VVlnCdvd---fP~~~PiPYVvqW~KdG~ 76 (80)
..|+.+.|.|.+. ||. .-.|.|.|+|.
T Consensus 12 ~~~~~~tLtC~v~gf~yP~----~i~v~W~r~~~ 41 (96)
T cd07696 12 LLTKSVKLTCLVTNLTSPE----GVNVTWTRGSG 41 (96)
T ss_pred ccCCCeEEEEEEeCCCCCC----CcEEEEEECCe
Confidence 3589999999874 453 33689999864
No 172
>cd05769 IgC_TCR_beta T cell receptor (TCR) beta chain constant immunoglobulin domain. IgC_TCR_beta: Constant domain of the beta chain of alpha/beta T-cell antigen receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are composed of alpha and beta, or gamma and delta, polypeptide chains with variable (V) and constant (C) regions. This group includes the variable domain of the beta chain. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. The antigen binding site is formed by the variable domains of the alpha and beta chains, located at the N-terminus of each chain. Alpha/beta TCRs recognize antigens differently from gamma/delta TCRs.
Probab=47.60 E-value=15 Score=24.71 Aligned_cols=27 Identities=15% Similarity=0.351 Sum_probs=20.3
Q ss_pred cCCeEEEeeecC--CCCCCCCceEEEeeecccc
Q psy531 47 LGESVVFNCGVD--FPGDTPVPYVLQWEKKIVK 77 (80)
Q Consensus 47 vGe~VVlnCdvd--fP~~~PiPYVvqW~KdG~~ 77 (80)
.++.+.|.|.+. ||.+ --|.|.|+|.+
T Consensus 17 ~~~~~tL~Cla~gFyP~~----I~V~W~kng~~ 45 (115)
T cd05769 17 NKRKATLVCLATGFYPDH----VSLSWKVNGKE 45 (115)
T ss_pred cCCCcEEEEEEEeEeCCC----cEEEEEECCEE
Confidence 357799999886 5643 35999999865
No 173
>PF13624 SurA_N_3: SurA N-terminal domain; PDB: 3NRK_A.
Probab=44.37 E-value=17 Score=23.78 Aligned_cols=18 Identities=6% Similarity=0.075 Sum_probs=10.6
Q ss_pred CcceEEeecCCeEEEeee
Q psy531 39 NAVHITALLGESVVFNCG 56 (80)
Q Consensus 39 ~P~~ltA~vGe~VVlnCd 56 (80)
.+....|+||+.-|-.=+
T Consensus 37 ~~~~~vA~V~g~~It~~e 54 (154)
T PF13624_consen 37 SNNNVVAKVNGEKITKSE 54 (154)
T ss_dssp ----EEEEETTEEEEHHH
T ss_pred CCCCEEEEECCEEeCHHH
Confidence 666777999998875433
No 174
>cd05847 IgC_CH2_IgE CH2 domain (second constant Ig domain of the heavy chain) in immunoglobulin E (IgE). IgC_CH2_IgE: The second constant domain of the heavy chain of immunoglobulin E (IgE). The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma, and mu, all consisting of a variable domain (VH) and three (in alpha, delta, and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). The different classes of antibodies vary in their heavy chains; the IgE class has the epsilon type. This domain (Cepsilon2) of IgE is in place of the flexible hinge region found in IgG.
Probab=42.51 E-value=30 Score=22.00 Aligned_cols=26 Identities=19% Similarity=0.414 Sum_probs=19.6
Q ss_pred CCeEEEeeecC--CCCCCCCceEEEeeecccc
Q psy531 48 GESVVFNCGVD--FPGDTPVPYVLQWEKKIVK 77 (80)
Q Consensus 48 Ge~VVlnCdvd--fP~~~PiPYVvqW~KdG~~ 77 (80)
.+.+.|.|.+. ||.+ --|.|.|+|.+
T Consensus 14 ~~~~~L~C~a~gFyP~~----I~vtW~~dg~~ 41 (94)
T cd05847 14 SETIQLLCLISGYTPGT----IEVEWLVDGQV 41 (94)
T ss_pred CCCEEEEEEEEeEECCC----CEEEEEECCEE
Confidence 45688999986 6743 34899999876
No 175
>COG5660 Predicted integral membrane protein [Function unknown]
Probab=40.58 E-value=21 Score=28.06 Aligned_cols=33 Identities=39% Similarity=0.419 Sum_probs=24.9
Q ss_pred hchhHHHHHHHHHHHHhhccCCCCCCCCcceEE
Q psy531 12 TNLHHISLQVLLIITLVHFKGVSPDISNAVHIT 44 (80)
Q Consensus 12 ~~~~~~~~~~ll~i~l~~~sg~~g~~~~P~~lt 44 (80)
+.+|||.-++++|+.|.++||-...+.+..-+.
T Consensus 180 ~h~p~~i~av~l~~~l~nssgp~~~~~~~~a~d 212 (238)
T COG5660 180 AHLPVIIGAVLLIIVLRNSSGPRPARDDAVAID 212 (238)
T ss_pred hcccHHHHHHHHhhhhhccCCCCcccchhhhcC
Confidence 567899999999999999998755444444443
No 176
>PF08205 C2-set_2: CD80-like C2-set immunoglobulin domain ; InterPro: IPR013162 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds. There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents the C2-set type domains found in the T-cell antigen CD80, as well as in related proteins. CD80 (B7-1) is a glycoprotein expressed on antigen-presenting cells []. The shared ligands on CD80 and CD86 (B7-2) deliver the co-stimulatory signal through CD28 and CTLA-4 on T-cells, where CD28 augments the T-cell response and CTLA-4 attenuates it [].; PDB: 3S58_A 3O3U_N 3CJJ_A 3S59_A 2PF6_B 2PET_A 3ALP_A 3SKU_D 3U83_A 3U82_B ....
Probab=40.08 E-value=25 Score=20.74 Aligned_cols=33 Identities=24% Similarity=0.456 Sum_probs=22.3
Q ss_pred eEEeecCCeEEEeeecCCCCCCCCceEEEeeeccccc
Q psy531 42 HITALLGESVVFNCGVDFPGDTPVPYVLQWEKKIVKN 78 (80)
Q Consensus 42 ~ltA~vGe~VVlnCdvdfP~~~PiPYVvqW~KdG~~~ 78 (80)
.++.. |+.+.+.|... .+.|.| .|.|.+++...
T Consensus 9 ~~~~~-~~~~~~~C~s~--~~~P~~-~i~W~~~~~~~ 41 (89)
T PF08205_consen 9 LLEGE-GEEVTLTCSSS--GGYPPP-QITWYLDGGPV 41 (89)
T ss_dssp EEESS-TEEEEEEEEEE--EEBS-E-EEEEEETTCEE
T ss_pred eEccc-ceEEEEEEEeC--CeECCe-EEEEEECCCce
Confidence 44444 89999999854 244544 68999988653
No 177
>PF13927 Ig_3: Immunoglobulin domain; PDB: 2D3V_A 1G0X_A 1VDG_A 1P7Q_D 3D2U_H 1UFU_A 1UGN_A 3VH8_H 3OQ3_B 4DKD_C ....
Probab=40.06 E-value=27 Score=18.74 Aligned_cols=19 Identities=21% Similarity=0.518 Sum_probs=16.1
Q ss_pred EEEeeecCCCCCCCCceEEEee
Q psy531 51 VVFNCGVDFPGDTPVPYVLQWE 72 (80)
Q Consensus 51 VVlnCdvdfP~~~PiPYVvqW~ 72 (80)
+.|.|.+..+.. +..++|.
T Consensus 18 ~~l~C~~~~~~~---~~~~~W~ 36 (75)
T PF13927_consen 18 VTLTCSAEGGPP---PPSISWY 36 (75)
T ss_dssp EEEEEEESSEES---SEEEEEE
T ss_pred EEEEEEEccccC---CeEEEEE
Confidence 999999987633 7889999
No 178
>cd07705 Ig2_Necl-1 Second immunoglobulin (Ig)-like domain of nectin-like molcule-1 (Necl-1, also known as cell adhesion molecule3 (CADM3)). Ig2_Necl-1: second immunoglobulin (Ig)-like domain of nectin-like molcule-1 (Necl-1, also known as cell adhesion molecule3 (CADM3)). These nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1 and Necl-2 have Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is specifically expressed in neural tissue and is important to the formation of synapses, axon bundles, and myel
Probab=39.20 E-value=44 Score=20.39 Aligned_cols=24 Identities=21% Similarity=0.562 Sum_probs=16.5
Q ss_pred EEEeeecCCCCCCCCceEEEeeecccc
Q psy531 51 VVFNCGVDFPGDTPVPYVLQWEKKIVK 77 (80)
Q Consensus 51 VVlnCdvdfP~~~PiPYVvqW~KdG~~ 77 (80)
+.|.|.+ ....|.+ -|-|.|+|++
T Consensus 2 ~~LtC~a--~g~~P~~-~ItW~k~g~~ 25 (83)
T cd07705 2 AKLRCTS--SGSKPAA-NIKWRKGDQE 25 (83)
T ss_pred EEEEEEe--cCccCCC-EeEEEECCEE
Confidence 4677877 2334555 6899999875
No 179
>cd05885 Ig2_Necl-4 Second immunoglobulin (Ig)-like domain of nectin-like molecule-4 (Necl-4, also known as cell adhesion molecule 4 (CADM4)). Ig2_Necl-4: second immunoglobulin (Ig)-like domain of nectin-like molecule-4 (Necl-4, also known as cell adhesion molecule 4 (CADM4)). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1-Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. Ig domains are likely to participate in ligand binding and recognition. Necl-4 is expressed on Schwann cells, and plays a key part in initiating peripheral nervous system (PNS) myelination. In injured peripheral nerve cells, the mRNA signal for both Necl-4 and Necl-5 was observed to be elevated. Necl-4 participates in cell-cell adhesion and is proposed to play a role in tumor suppression.
Probab=38.84 E-value=45 Score=21.15 Aligned_cols=25 Identities=16% Similarity=0.276 Sum_probs=17.6
Q ss_pred EEEeeecCCCCCCCCceEEEeeeccccc
Q psy531 51 VVFNCGVDFPGDTPVPYVLQWEKKIVKN 78 (80)
Q Consensus 51 VVlnCdvdfP~~~PiPYVvqW~KdG~~~ 78 (80)
|.|.|--. +.-||=.+.|.|+|++-
T Consensus 2 ~~L~C~s~---~skP~a~i~W~k~~~~l 26 (80)
T cd05885 2 VELTCLSP---RSKPAATLRWYRDRKEL 26 (80)
T ss_pred EEEEEeCC---CccCCCeEEEEECCEEC
Confidence 67888653 44455669999998763
No 180
>cd07699 IgC_L Immunoglobulin Constant domain. IgC_L: Immunoglobulin (Ig) light chain constant (C) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which seem to be functionally identical, and can associate with any of the heavy chains.
Probab=37.38 E-value=28 Score=22.10 Aligned_cols=27 Identities=19% Similarity=0.457 Sum_probs=20.4
Q ss_pred cCCeEEEeeecC--CCCCCCCceEEEeeecccc
Q psy531 47 LGESVVFNCGVD--FPGDTPVPYVLQWEKKIVK 77 (80)
Q Consensus 47 vGe~VVlnCdvd--fP~~~PiPYVvqW~KdG~~ 77 (80)
-|+.+.|.|.+. ||.+ --|.|.|+|++
T Consensus 16 ~~~~~~L~C~~~gfyP~~----i~v~W~~~g~~ 44 (100)
T cd07699 16 KSGKATLVCLINDFYPGF----ATVQWKVDGAT 44 (100)
T ss_pred cCCCcEEEEEEEeEECCC----CEEEEEECCEE
Confidence 357799999986 5533 35999999876
No 181
>cd05884 Ig2_Necl-3 Second immunoglobulin (Ig)-like domain of nectin-like molecule-3 (Necl-3, also known as cell adhesion molecule 2 (CADM2)). Ig2_Necl-3: second immunoglobulin (Ig)-like domain of nectin-like molecule-3 (Necl-3, also known as cell adhesion molecule 2 (CADM2)). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. Necl-3 has been shown to accumulate in tissues of the central and peripheral nervous system, where it is expressed in ependymal cells and myelinated axons. It is observed at the interface between the axon shaft and the myelin sheath. Ig domains are likely to participate in ligand binding and recognition.
Probab=36.99 E-value=47 Score=20.48 Aligned_cols=24 Identities=13% Similarity=0.310 Sum_probs=16.4
Q ss_pred EEEeeecCCCCCCCCceEEEeeecccc
Q psy531 51 VVFNCGVDFPGDTPVPYVLQWEKKIVK 77 (80)
Q Consensus 51 VVlnCdvdfP~~~PiPYVvqW~KdG~~ 77 (80)
|.|-|.+. |.-|+=-|.|.|+|..
T Consensus 2 ~~LtC~a~---gf~P~~~itW~kng~~ 25 (83)
T cd05884 2 MQLTCKTS---GSKPAADIRWFKNDKE 25 (83)
T ss_pred EEEEEEeC---CccCCCEEEEEECCEE
Confidence 56778872 3333466899999875
No 182
>cd05888 Ig1_Nectin-4_like Frst immunoglobulin (Ig) domain of nectin-4 (also known as poliovirus receptor related protein 4, or as LNIR receptor) and similar proteins. Ig1_Nectin-4_like: domain similar to the first immunoglobulin (Ig) domain of nectin-4 (also known as poliovirus receptor related protein 4, or as LNIR receptor). Nectin-4 belongs to the nectin family, which is comprised of four transmembrane glycoproteins (nectins-1 through -4). Nectins are synaptic cell adhesion molecules (CAMs) which participate in adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. For example nectin-4 trans-interacts with nectin-1. Nectin-4 has also been shown to interact with the actin filament-binding protein, afadin. Unlike the other nectins, which are widely expressed in adult tissues, nectin-4 is mainly expressed during embryogenesis, and is not detected in normal adult
Probab=36.54 E-value=62 Score=20.16 Aligned_cols=25 Identities=8% Similarity=0.266 Sum_probs=16.7
Q ss_pred eEEEeeecCCCCCCCCceEEEeeecc
Q psy531 50 SVVFNCGVDFPGDTPVPYVLQWEKKI 75 (80)
Q Consensus 50 ~VVlnCdvdfP~~~PiPYVvqW~KdG 75 (80)
.|.|.|.+....+ +...-|.|.|..
T Consensus 2 ~v~L~C~~~~~~~-~~~~~v~W~k~~ 26 (100)
T cd05888 2 DTRLPCRYNVSDG-ETVVQVLWIREN 26 (100)
T ss_pred CEEEEeEEecCCC-CcEEEEEEEEcc
Confidence 5889999864322 334568899864
No 183
>PRK15315 outer membrane protein RatA; Provisional
Probab=35.44 E-value=35 Score=33.54 Aligned_cols=42 Identities=26% Similarity=0.346 Sum_probs=29.5
Q ss_pred HhhccCCCCCCCCcce-------EEeecCCeEEEeeec-CCCCCCCCceE
Q psy531 27 LVHFKGVSPDISNAVH-------ITALLGESVVFNCGV-DFPGDTPVPYV 68 (80)
Q Consensus 27 l~~~sg~~g~~~~P~~-------ltA~vGe~VVlnCdv-dfP~~~PiPYV 68 (80)
+++|+|-....-+|.. ..|||||++.|.-.+ +--.+.|+||-
T Consensus 456 ~vSC~~k~~~~v~~~~~~s~~~~akakVGe~i~m~~~~~~~~n~~plpy~ 505 (1865)
T PRK15315 456 LVSCVDKAQPAAHPQITLSPQGPYKAQVGESIDLTMTVVDRDTQKPLPYR 505 (1865)
T ss_pred EEEecCCCCCccccceeecCCcccceecCceEEEEEEEEccCCCCcccce
Confidence 4566665333333333 459999999999987 65589999985
No 184
>cd05734 Ig7_DSCAM Seventh immunoglobulin (Ig)-like domain of Down Syndrome Cell Adhesion molecule (DSCAM). Ig7_DSCAM: the seventh immunoglobulin (Ig)-like domain of Down Syndrome Cell Adhesion molecule (DSCAM). DSCAM is a cell adhesion molecule expressed largely in the developing nervous system. The gene encoding DSCAM is located at human chromosome 21q22, the locus associated with the mental retardation phenotype of Down Syndrome. DSCAM is predicted to be the largest member of the IG superfamily. It has been demonstrated that DSCAM can mediate cation-independent homophilic intercellular adhesion.
Probab=34.45 E-value=23 Score=20.63 Aligned_cols=19 Identities=26% Similarity=0.574 Sum_probs=12.6
Q ss_pred EEEeeecCCCCCCCCceEEEee
Q psy531 51 VVFNCGVDFPGDTPVPYVLQWE 72 (80)
Q Consensus 51 VVlnCdvdfP~~~PiPYVvqW~ 72 (80)
|.|.|.++ |.|.|.+-=..
T Consensus 1 v~l~C~~~---G~P~P~v~W~~ 19 (79)
T cd05734 1 VTLNCSAE---GYPPPTIVWKH 19 (79)
T ss_pred CEeEeeCe---EeCCCEEEEEE
Confidence 57899875 66777655444
No 185
>TIGR02657 amicyanin amicyanin. Members of this family are amicyanin, a type I blue copper protein that accepts electrons from the tryptophan tryptophylquinone (TTQ) cofactor of the methylamine dehydrogenase light chain and then transfers them to the heme group of cytochrome c-551i. Amicyanin, methylamine dehydrogenase, and cytochrome c-551i are periplasmic and form a complex. This system has been studied primarily in Paracoccus denitrificans and Methylobacterium extorquens. Related type I blue copper proteins include plastocyanin, pseudoazurin, halocyanin, etc.
Probab=33.82 E-value=39 Score=20.70 Aligned_cols=18 Identities=11% Similarity=0.250 Sum_probs=15.5
Q ss_pred CCCcceEEeecCCeEEEe
Q psy531 37 ISNAVHITALLGESVVFN 54 (80)
Q Consensus 37 ~~~P~~ltA~vGe~VVln 54 (80)
.=+|..+++++|+.|.+.
T Consensus 7 ~F~P~~i~v~~GdtVt~~ 24 (83)
T TIGR02657 7 KYETPELHVKVGDTVTWI 24 (83)
T ss_pred EEcCCEEEECCCCEEEEE
Confidence 347899999999999986
No 186
>cd05721 IgV_CTLA-4 Immunoglobulin (Ig) domain of cytotoxic T lymphocyte-associated antigen 4 (CTLA-4). IgV_CTLA-4: domain similar to the variable(v)-type immunoglobulin (Ig) domain found in cytotoxic T lymphocyte-associated antigen 4 (CTLA-4). CTLA-4 is involved in the regulation of T cell response, acting as an inhibitor of intracellular signalling. CTLA-4 is similar to CD28, a T cell co-receptor protein that recognizes the B7 proteins (CD80 and CD86). CD28 binding of the B7 proteins occurs after the presentation of antigen to the T cell receptor (TCR) via the peptide-MHC complex on the surface of an antigen presenting cell (APC). CTLA-4 also binds the B7 molecules with a higher affinity than does CD28. The B7/CTLA-4 interaction generates inhibitory signals down-regulating the response, and may prevent T cell activation by weak TCR signals. CD28 and CTLA-4 then elicit opposing signals in the regulation of T cell responsiveness and homeostasis. T cell activation leads to increased
Probab=33.07 E-value=70 Score=22.14 Aligned_cols=32 Identities=13% Similarity=0.168 Sum_probs=23.1
Q ss_pred EEeecCCeEEEeeecCCCCCCCCceEEEeeecc
Q psy531 43 ITALLGESVVFNCGVDFPGDTPVPYVLQWEKKI 75 (80)
Q Consensus 43 ltA~vGe~VVlnCdvdfP~~~PiPYVvqW~KdG 75 (80)
+..+.|++|-|.|....+. ..==|-++|.|+-
T Consensus 8 ~lv~p~~sv~LsC~~sg~~-~s~e~~~~wvRq~ 39 (115)
T cd05721 8 VLASSNGAASLVCEYTYNG-FSKEFRASLLKGA 39 (115)
T ss_pred eEEcCCCCEEEEEEecCCc-cccEEEEEEEEeC
Confidence 4478899999999886552 1112789999974
No 187
>PRK15249 fimbrial chaperone protein StbB; Provisional
Probab=32.49 E-value=1.1e+02 Score=22.94 Aligned_cols=52 Identities=19% Similarity=0.278 Sum_probs=27.1
Q ss_pred HHHHHHHHHhhccCCCCCCCCcceEE---eecCCeEEEeeecCCCCCCCCceEEE-eeeccc
Q psy531 19 LQVLLIITLVHFKGVSPDISNAVHIT---ALLGESVVFNCGVDFPGDTPVPYVLQ-WEKKIV 76 (80)
Q Consensus 19 ~~~ll~i~l~~~sg~~g~~~~P~~lt---A~vGe~VVlnCdvdfP~~~PiPYVvq-W~KdG~ 76 (80)
+++|++.++.+++...+...+|.++. ..-+.++-+. +...-||.+| |..++.
T Consensus 13 ~~~~~~~~~~~~~a~A~l~l~~TRviy~~~~~~~sl~l~------N~~~~p~LvQsWv~~~~ 68 (253)
T PRK15249 13 LIVFLFLALPATASWASVTILGSRIIYPSTASSVDVQLK------NNDAIPYIVQTWFDDGD 68 (253)
T ss_pred HHHHHHHHhhhHhheeEEEeCceEEEEeCCCcceeEEEE------cCCCCcEEEEEEEeCCC
Confidence 34555555555444455556666654 2333445442 2223478887 875554
No 188
>KOG4194|consensus
Probab=31.12 E-value=52 Score=30.00 Aligned_cols=33 Identities=24% Similarity=0.422 Sum_probs=24.0
Q ss_pred eEEeecCCeEEEeeecCCCCCCCCceEEEeeecccc
Q psy531 42 HITALLGESVVFNCGVDFPGDTPVPYVLQWEKKIVK 77 (80)
Q Consensus 42 ~ltA~vGe~VVlnCdvdfP~~~PiPYVvqW~KdG~~ 77 (80)
+.+-.+||.++|-|--+-- |.--.++|+|+.++
T Consensus 715 ~~~V~~get~vlqC~a~~~---~a~pr~~W~k~d~p 747 (873)
T KOG4194|consen 715 DQLVVVGETLVLQCLAEGA---PADPRLEWFKEDKP 747 (873)
T ss_pred ceEEEecceEEEEEecCCC---CCCccccccCCCCc
Confidence 3567899999999986643 33123799999875
No 189
>KOG3513|consensus
Probab=29.65 E-value=74 Score=29.64 Aligned_cols=38 Identities=21% Similarity=0.391 Sum_probs=31.5
Q ss_pred CCCcceEEeecCCeEEEeeecCCCCCCCCceEEEeeeccccc
Q psy531 37 ISNAVHITALLGESVVFNCGVDFPGDTPVPYVLQWEKKIVKN 78 (80)
Q Consensus 37 ~~~P~~ltA~vGe~VVlnCdvdfP~~~PiPYVvqW~KdG~~~ 78 (80)
-+.|+..++..||.|.|-|-.. |.|-|- +.|.|.|.+-
T Consensus 335 ~~~~~d~~~~~gs~v~~eC~a~---g~P~p~-v~WlkNg~pl 372 (1051)
T KOG3513|consen 335 LQKPQDTEADTGSNVTLECKAS---GKPNPT-VKWLKNGEPL 372 (1051)
T ss_pred hcccceeEecCCCCeEEEEEec---CCCCCc-eEEeeCCeec
Confidence 3478889999999999999986 666665 6999999764
No 190
>cd05770 IgC_beta2m Class I major histocompatibility complex (MHC) beta2-microglobulin. IgC_beta2m: Immunoglobulin-like domain in beta2-Microglobulin (beta2m). Beta2m is the non-covalently bound light chain of the human class I major histocompatibility complex (MHC-I). Beta2m is structured as a beta-sandwich domain composed of two facing beta-sheets (four stranded and three stranded), that is typical of the C-type immunoglobulin superfamily. This structure is stabilized by an intramolecular disulfide bridge connecting two Cys residues in the facing beta -sheets. In vivo, MHC-I continuously exposes beta2m on the cell surface, where it may be released to plasmatic fluids, transported to the kidneys, degraded and then excreted.
Probab=29.31 E-value=61 Score=20.78 Aligned_cols=29 Identities=14% Similarity=0.313 Sum_probs=20.9
Q ss_pred EEeecCCeEEEeeecCCCCCCCCceEEEee
Q psy531 43 ITALLGESVVFNCGVDFPGDTPVPYVLQWE 72 (80)
Q Consensus 43 ltA~vGe~VVlnCdvdfP~~~PiPYVvqW~ 72 (80)
++-..++.-.+.|.|+|. +.+-|-++.|+
T Consensus 65 l~~~~~~~~~ysC~V~H~-~l~~p~~~~we 93 (93)
T cd05770 65 TEFTPTKGDEYACRVRHN-SMSEPKKYKWD 93 (93)
T ss_pred EEECCCCCCeEEEEEEEC-CCCCCEEEeCC
Confidence 444567777899999997 44456677884
No 191
>TIGR03516 ppisom_GldI peptidyl-prolyl isomerase, gliding motility-associated. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldI is a FKBP-type peptidyl-prolyl cis-trans isomerase (pfam00254) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockout of this gene abolishes the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. This family is only found in Bacteroidetes containing the suite of genes proposed to confer the gliding motility phenotype.
Probab=29.03 E-value=48 Score=23.76 Aligned_cols=24 Identities=25% Similarity=0.487 Sum_probs=12.5
Q ss_pred HHHHHHHHHHHhhccCCCCCCCCcceE
Q psy531 17 ISLQVLLIITLVHFKGVSPDISNAVHI 43 (80)
Q Consensus 17 ~~~~~ll~i~l~~~sg~~g~~~~P~~l 43 (80)
|++++++ +++.+|+ ..+.++|+-.
T Consensus 5 ~~~~~~~-~~~~~c~--~~~~~~pv~~ 28 (177)
T TIGR03516 5 IAVILLL-LLLLGCK--TPEARRPISR 28 (177)
T ss_pred HHHHHHH-HHHhhcC--CCCCCCCcCC
Confidence 3444433 4444554 5567777653
No 192
>PF15092 UPF0728: Uncharacterised protein family UPF0728
Probab=28.95 E-value=55 Score=22.32 Aligned_cols=22 Identities=14% Similarity=0.335 Sum_probs=17.7
Q ss_pred CcceEEeecCCeEEEeeecCCC
Q psy531 39 NAVHITALLGESVVFNCGVDFP 60 (80)
Q Consensus 39 ~P~~ltA~vGe~VVlnCdvdfP 60 (80)
+=+.++-.+++.+||+|++.+-
T Consensus 48 d~n~vel~vnge~VF~CnI~~L 69 (88)
T PF15092_consen 48 DWNVVELVVNGEIVFQCNITDL 69 (88)
T ss_pred cccEEEEEECCeEEEEeCCcee
Confidence 3345778999999999998765
No 193
>cd07689 Ig2_VCAM-1 Second immunoglobulin (Ig)-like domain of vascular endothelial cell adhesion molecule-1 (VCAM-1, CD106) and intercellular cell adhesion molecule-1 (ICAM-1, CD54) and similar proteins. Ig2_ VCAM-1_like: domain similar to the second immunoglobulin (Ig)-like domain of vascular endothelial cell adhesion molecule-1 (VCAM-1, CD106). During the inflammation process, these molecules recruit leukocytes onto the vascular endothelium before extravasation to the injured tissues. The interaction of VCAM-1 binding to the beta1 integrin very late antigen (VLA-4) expressed by lymphocytes and monocytes mediates the adhesion of leucocytes to blood vessel walls, and regulates migration across the endothelium. During metastasis, some circulating cancer cells extravasate to a secondary site by a similar process. VCAM-1 may be involved in organ targeted tumor metastasis and may also act as host receptors for viruses and parasites. VCAM-1 contains seven Ig domains.
Probab=28.39 E-value=66 Score=21.81 Aligned_cols=27 Identities=26% Similarity=0.400 Sum_probs=19.7
Q ss_pred eecCCeEEEeeecC--CCCCCCCceEEEeeec
Q psy531 45 ALLGESVVFNCGVD--FPGDTPVPYVLQWEKK 74 (80)
Q Consensus 45 A~vGe~VVlnCdvd--fP~~~PiPYVvqW~Kd 74 (80)
..+|+.|.+.|.+. +|.++ -.|.|.|-
T Consensus 12 l~~G~~vtv~C~v~~v~P~~~---l~v~LlkG 40 (99)
T cd07689 12 LEEGKPVTVKCEVPDVYPFDR---LEIELLKG 40 (99)
T ss_pred ccCCceEEEEEEecCcccCCc---eEEEEecC
Confidence 47899999999996 55444 34788763
No 194
>TIGR03352 VI_chp_3 type VI secretion lipoprotein, VC_A0113 family. Work by Mougous, et al. (2006), describes IAHP-related loci as a type VI secretion system (PubMed:16763151). This protein family is associated with type VI secretion loci, although not treated explicitly by Mougous, et al.
Probab=28.26 E-value=1.5e+02 Score=20.60 Aligned_cols=47 Identities=13% Similarity=0.150 Sum_probs=22.2
Q ss_pred HHHHHHHHHHhhccCCCCCCCCcce--EEeecCCeEEEeeecCCCCCCCCceEEE
Q psy531 18 SLQVLLIITLVHFKGVSPDISNAVH--ITALLGESVVFNCGVDFPGDTPVPYVLQ 70 (80)
Q Consensus 18 ~~~~ll~i~l~~~sg~~g~~~~P~~--ltA~vGe~VVlnCdvdfP~~~PiPYVvq 70 (80)
++.+++|++|..|+.... ..+|.. ++-.++.. +| ....|+|-|-+|.
T Consensus 4 ~~~l~~~llL~gC~s~~~-~~~~~~v~l~i~a~~~--lN---p~~~g~p~Pvvvr 52 (146)
T TIGR03352 4 AVLLAACLLLAGCSSAPP-PKEPTYVTLTLTAAPD--VN---PDEDGRASPVVVR 52 (146)
T ss_pred HHHHHHHHHHhhccCCCC-CCCCeEEEEEEEecCC--cC---CCCCCCccCeEEE
Confidence 345566667766664432 234433 33222222 22 1234677776664
No 195
>TIGR02656 cyanin_plasto plastocyanin. Members of this family are plastocyanin, a blue copper protein related to pseudoazurin, halocyanin, amicyanin, etc. This protein, located in the thylakoid luman, performs electron transport to photosystem I in Cyanobacteria and chloroplasts.
Probab=28.18 E-value=52 Score=20.80 Aligned_cols=18 Identities=17% Similarity=0.338 Sum_probs=16.0
Q ss_pred CCCcceEEeecCCeEEEe
Q psy531 37 ISNAVHITALLGESVVFN 54 (80)
Q Consensus 37 ~~~P~~ltA~vGe~VVln 54 (80)
.=+|..++.++|+.|.|-
T Consensus 13 ~F~P~~i~v~~G~~V~~~ 30 (99)
T TIGR02656 13 VFEPAKISIAAGDTVEWV 30 (99)
T ss_pred eEeCCEEEECCCCEEEEE
Confidence 458999999999999987
No 196
>TIGR03042 PS_II_psbQ_bact photosystem II protein PsbQ. This protein through the member sll1638 from Synechocystis sp. PCC 6803, was shown to be part of the cyanobacteria photosystem II. It is homologous to (but quite diverged from) the chloroplast PsbQ protein, called oxygen-evolving enhancer protein 3 (OEE3). We designate this cyanobacteria protein PsbQ by homology.
Probab=27.84 E-value=74 Score=22.90 Aligned_cols=21 Identities=33% Similarity=0.463 Sum_probs=14.5
Q ss_pred hhHHHHHHHHHHHHhhccCCCC
Q psy531 14 LHHISLQVLLIITLVHFKGVSP 35 (80)
Q Consensus 14 ~~~~~~~~ll~i~l~~~sg~~g 35 (80)
+-++.+++++|+ |++|+|-..
T Consensus 4 ~~s~~Lv~~~~~-Lvsc~~p~~ 24 (142)
T TIGR03042 4 LASLLLVLLLTF-LVSCSGPAA 24 (142)
T ss_pred HHHHHHHHHHHH-HHHcCCCcc
Confidence 345667777777 889887544
No 197
>KOG4222|consensus
Probab=27.64 E-value=59 Score=31.00 Aligned_cols=39 Identities=28% Similarity=0.508 Sum_probs=30.6
Q ss_pred CCCcceEEeecCCeEEEeeecCCCCCCCCceEEEeeeccccc
Q psy531 37 ISNAVHITALLGESVVFNCGVDFPGDTPVPYVLQWEKKIVKN 78 (80)
Q Consensus 37 ~~~P~~ltA~vGe~VVlnCdvdfP~~~PiPYVvqW~KdG~~~ 78 (80)
+.+|-.+.|-+||.++|-|- -|.++|-|- |-|.|||++-
T Consensus 135 rv~prd~~~a~ge~avlEcg--pP~ghpept-vSw~Kdg~pl 173 (1281)
T KOG4222|consen 135 RVSPRDVQAAVGEEAVLECG--PPRGHPEPT-VSWVKDGKPL 173 (1281)
T ss_pred ccCcccccccccceeEEecc--CCCCCCCCc-ceeecCCCcc
Confidence 44777788999999999996 456666654 7899999763
No 198
>KOG3515|consensus
Probab=27.47 E-value=53 Score=29.36 Aligned_cols=30 Identities=27% Similarity=0.490 Sum_probs=25.9
Q ss_pred EeecCCeEEEeeecCCCCCCCCceEEEeeeccc
Q psy531 44 TALLGESVVFNCGVDFPGDTPVPYVLQWEKKIV 76 (80)
Q Consensus 44 tA~vGe~VVlnCdvdfP~~~PiPYVvqW~KdG~ 76 (80)
-++.||.|-|.|++ .+.|++--+||.+-+.
T Consensus 18 ~~~~g~~v~l~C~v---~~~pp~~~~eW~h~~~ 47 (741)
T KOG3515|consen 18 GLRLGEDVPLPCRV---NSNPPEIDVEWYHSTS 47 (741)
T ss_pred hhccCCcceeeeec---CCCCCCcceEEEecCc
Confidence 57999999999998 4788889999998654
No 199
>PRK02710 plastocyanin; Provisional
Probab=27.03 E-value=1.2e+02 Score=19.86 Aligned_cols=16 Identities=19% Similarity=0.314 Sum_probs=14.2
Q ss_pred CcceEEeecCCeEEEe
Q psy531 39 NAVHITALLGESVVFN 54 (80)
Q Consensus 39 ~P~~ltA~vGe~VVln 54 (80)
+|..+++++|+.|.|.
T Consensus 45 ~P~~i~v~~Gd~V~~~ 60 (119)
T PRK02710 45 EPSTLTIKAGDTVKWV 60 (119)
T ss_pred eCCEEEEcCCCEEEEE
Confidence 7888999999999885
No 200
>TIGR02375 pseudoazurin pseudoazurin. Pseudoazurin, also called cupredoxin, is a small, blue periplasmic protein with a single bound copper atom. Pseudoazurin is related plastocyanins. Several examples of pseudoazurin are encoded by a neighboring gene for, or have been shown to transfer electrons to, copper-containing nitrite reductases (TIGR02376) of the same species.
Probab=26.74 E-value=54 Score=22.26 Aligned_cols=18 Identities=28% Similarity=0.392 Sum_probs=15.9
Q ss_pred CCCcceEEeecCCeEEEe
Q psy531 37 ISNAVHITALLGESVVFN 54 (80)
Q Consensus 37 ~~~P~~ltA~vGe~VVln 54 (80)
.=+|..++.++|+.|.|-
T Consensus 11 ~F~P~~v~V~~GdTV~f~ 28 (116)
T TIGR02375 11 VFEPAYIRAAPGDTVTFV 28 (116)
T ss_pred EEeCCEEEECCCCEEEEE
Confidence 458999999999999984
No 201
>KOG3073|consensus
Probab=26.52 E-value=25 Score=27.67 Aligned_cols=13 Identities=31% Similarity=0.432 Sum_probs=12.0
Q ss_pred EeecCCeEEEeee
Q psy531 44 TALLGESVVFNCG 56 (80)
Q Consensus 44 tA~vGe~VVlnCd 56 (80)
++|+|.|++||||
T Consensus 44 ~~Kvg~y~ll~~d 56 (236)
T KOG3073|consen 44 TAKVGKYQLLNSD 56 (236)
T ss_pred hhhhhheeeeccc
Confidence 5899999999998
No 202
>TIGR02408 ectoine_ThpD ectoine hydroxylase. Both ectoine and hydroxyectoine are compatible solvents that serve as protectants against osmotic and thermal stresses. A number of genomes synthesize ectoine. This enzyme allows conversion of ectoine to hydroxyectoine, which may be more effective for some purposes, and is found in a subset of ectoine-producing organisms.
Probab=25.91 E-value=44 Score=24.80 Aligned_cols=19 Identities=26% Similarity=0.448 Sum_probs=17.0
Q ss_pred eEEeecCCeEEEeeecCCC
Q psy531 42 HITALLGESVVFNCGVDFP 60 (80)
Q Consensus 42 ~ltA~vGe~VVlnCdvdfP 60 (80)
.+++++|+-++|+|.+-|-
T Consensus 212 ~~~~~aGDvl~f~~~~~H~ 230 (277)
T TIGR02408 212 TFTGKAGSAVWFDCNTMHG 230 (277)
T ss_pred eeccCCceEEEEccccccC
Confidence 4678999999999999886
No 203
>PF15284 PAGK: Phage-encoded virulence factor
Probab=24.91 E-value=37 Score=21.78 Aligned_cols=12 Identities=33% Similarity=0.930 Sum_probs=9.9
Q ss_pred eeecCCCCCCCCc
Q psy531 54 NCGVDFPGDTPVP 66 (80)
Q Consensus 54 nCdvdfP~~~PiP 66 (80)
=|+ -+|.|.|+|
T Consensus 42 wC~-lwP~g~~iP 53 (61)
T PF15284_consen 42 WCD-LWPAGIPIP 53 (61)
T ss_pred HHh-cCCCCCCCC
Confidence 699 569999887
No 204
>PF07172 GRP: Glycine rich protein family; InterPro: IPR010800 This family consists of glycine rich proteins. Some of them may be involved in resistance to environmental stress [].
Probab=24.51 E-value=35 Score=22.66 Aligned_cols=8 Identities=13% Similarity=0.152 Sum_probs=3.3
Q ss_pred HHHHHhhc
Q psy531 23 LIITLVHF 30 (80)
Q Consensus 23 l~i~l~~~ 30 (80)
++++|+++
T Consensus 14 A~lLlisS 21 (95)
T PF07172_consen 14 AALLLISS 21 (95)
T ss_pred HHHHHHHh
Confidence 33444443
No 205
>KOG4194|consensus
Probab=24.47 E-value=55 Score=29.88 Aligned_cols=38 Identities=24% Similarity=0.614 Sum_probs=31.8
Q ss_pred CCCcceEEeecCCeEEEeeecCCCCCCCCceEEEeeeccc
Q psy531 37 ISNAVHITALLGESVVFNCGVDFPGDTPVPYVLQWEKKIV 76 (80)
Q Consensus 37 ~~~P~~ltA~vGe~VVlnCdvdfP~~~PiPYVvqW~KdG~ 76 (80)
.++|+-+-|-.|+.+-|-|...-|..+ |--++|-||..
T Consensus 507 ~~qPe~~~al~g~nirftC~a~sssas--plsi~WR~dne 544 (873)
T KOG4194|consen 507 VTQPETVSALIGENIRFTCNAYSSSAS--PLSIEWRKDNE 544 (873)
T ss_pred ecCchHhhhhhccceEEEEEeccCCCC--CceeEeeeccc
Confidence 447777779999999999999999777 55789999864
No 206
>PF11153 DUF2931: Protein of unknown function (DUF2931); InterPro: IPR021326 Some members in this family of proteins are annotated as lipoproteins however this cannot be confirmed. Currently, there is no known function.
Probab=23.22 E-value=99 Score=22.14 Aligned_cols=18 Identities=22% Similarity=0.239 Sum_probs=11.2
Q ss_pred HHHHHHHHHHhhccCCCC
Q psy531 18 SLQVLLIITLVHFKGVSP 35 (80)
Q Consensus 18 ~~~~ll~i~l~~~sg~~g 35 (80)
.+.+++|++|.+|+....
T Consensus 4 i~~l~l~lll~~C~~~~~ 21 (216)
T PF11153_consen 4 ILLLLLLLLLTGCSTNPN 21 (216)
T ss_pred HHHHHHHHHHHhhcCCCc
Confidence 344556677777776544
No 207
>cd05883 Ig2_Necl-2 Second immunoglobulin (Ig)-like domain of nectin-like molecule 2 (also known as cell adhesion molecule 1 (CADM1)). Ig2_Necl-2: second immunoglobulin (Ig)-like domain of nectin-like molecule 2 (also known as cell adhesion molecule 1 (CADM1)). Nectin-like molecules (Necls) have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. Necl-2 has Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is expressed in a wide variety of tissues, and is a putative tumour suppressor gene, which is downregulated in aggressive neuroblastoma. Ig domains are likely to participate in ligand binding and recognition.
Probab=23.12 E-value=1.2e+02 Score=19.42 Aligned_cols=24 Identities=17% Similarity=0.346 Sum_probs=17.2
Q ss_pred EEEeeecCCCCCCCCceEEEeeecccc
Q psy531 51 VVFNCGVDFPGDTPVPYVLQWEKKIVK 77 (80)
Q Consensus 51 VVlnCdvdfP~~~PiPYVvqW~KdG~~ 77 (80)
+.|.|... |+-|+=.+.|.|+|++
T Consensus 2 ~~L~C~s~---gSkP~A~I~W~k~~~~ 25 (82)
T cd05883 2 IELNCTAM---ASKPAATIRWFKGNKE 25 (82)
T ss_pred EEEEEEec---CCCCCCEEEEEECCEE
Confidence 56778764 5556667899999865
No 208
>PF00084 Sushi: Sushi domain (SCR repeat); InterPro: IPR000436 Sushi domains are also known as Complement control protein (CCP) modules, or short consensus repeats (SCR), exist in a wide variety of complement and adhesion proteins. The structure is known for this domain, it is based on a beta-sandwich arrangement; one face made up of three beta-strands hydrogen-bonded to form a triple-stranded region at its centre and the other face formed from two separate beta-strands []. CD21 (also called C3d receptor, CR2, Epstein Barr virus receptor or EBV-R) is the receptor for EBV and for C3d, C3dg and iC3b. Complement components may activate B cells through CD21. CD21 is part of a large signal-transduction complex that also involves CD19, CD81, and Leu13. Some of the proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Complement decay-accelerating factor (Antigen CD55) belongs to the Cromer blood group system and is associated with Cr(a), Dr(a), Es(a), Tc(a/b/c), Wd(a), WES(a/b), IFC and UMC antigens. Complement receptor type 1 (C3b/C4b receptor) (Antigen CD35) belongs to the Knops blood group system and is associated with Kn(a/b), McC(a), Sl(a) and Yk(a) antigens. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; PDB: 1HFH_A 1HFI_A 1E5G_A 2UWN_A 2V8E_A 2XWB_H 3HS0_I 2OK5_A 2XWJ_J 3HRZ_D ....
Probab=22.59 E-value=52 Score=17.49 Aligned_cols=16 Identities=25% Similarity=0.627 Sum_probs=13.2
Q ss_pred eecCCeEEEeeecCCC
Q psy531 45 ALLGESVVFNCGVDFP 60 (80)
Q Consensus 45 A~vGe~VVlnCdvdfP 60 (80)
-..|+.|.|.|+--|=
T Consensus 19 ~~~g~~~~~~C~~Gy~ 34 (56)
T PF00084_consen 19 YSYGSTVTFSCNPGYE 34 (56)
T ss_dssp EETTEEEEEEESTTEE
T ss_pred ccCCCEEEEcCCCCCE
Confidence 5789999999987664
No 209
>KOG4222|consensus
Probab=22.49 E-value=55 Score=31.19 Aligned_cols=36 Identities=22% Similarity=0.421 Sum_probs=26.5
Q ss_pred cceEEeecCCeEEEeeecCCCCCCCCceEEEeeecccccC
Q psy531 40 AVHITALLGESVVFNCGVDFPGDTPVPYVLQWEKKIVKNN 79 (80)
Q Consensus 40 P~~ltA~vGe~VVlnCdvdfP~~~PiPYVvqW~KdG~~~~ 79 (80)
|..+--+-||-+-|||... |+|+|- +||.|+|..+.
T Consensus 38 p~d~vvs~~~patlnc~as---G~ppPt-i~w~k~G~~~~ 73 (1281)
T KOG4222|consen 38 PHDLVVSKGEPATLNCKAS---GDPPPT-IEWYKDGENVF 73 (1281)
T ss_pred chhhhccCCCCceeecCCC---CCCCCc-eecccCCcccC
Confidence 3344478899999999764 665554 79999997554
No 210
>COG1952 SecB Preprotein translocase subunit SecB [Intracellular trafficking and secretion]
Probab=21.37 E-value=69 Score=23.74 Aligned_cols=18 Identities=44% Similarity=0.685 Sum_probs=15.7
Q ss_pred EEeecCCeEEEeeecCCC
Q psy531 43 ITALLGESVVFNCGVDFP 60 (80)
Q Consensus 43 ltA~vGe~VVlnCdvdfP 60 (80)
+|||.|+.+.|.|.|.+-
T Consensus 66 v~ak~~~~~~F~~Ev~qa 83 (157)
T COG1952 66 VTAKLGEKTAFLCEVQQA 83 (157)
T ss_pred EEEEcCCeeEEEEEEEEe
Confidence 569999999999999764
No 211
>PF14509 GH97_C: Glycosyl-hydrolase 97 C-terminal, oligomerisation; PDB: 3A24_A 2JKP_A 2JKE_A 2D73_B 2ZQ0_B 2JKA_A.
Probab=20.59 E-value=75 Score=21.12 Aligned_cols=23 Identities=9% Similarity=-0.012 Sum_probs=10.0
Q ss_pred EeeecCCCCCCCCceEEEeeeccc
Q psy531 53 FNCGVDFPGDTPVPYVLQWEKKIV 76 (80)
Q Consensus 53 lnCdvdfP~~~PiPYVvqW~KdG~ 76 (80)
+..+++|-... ..|.++=.+||.
T Consensus 42 i~l~L~FL~~g-~~y~a~i~~D~~ 64 (103)
T PF14509_consen 42 ITLPLSFLDKG-KKYTATIYTDGP 64 (103)
T ss_dssp EEEEGCCS-TT---EEEEEEEE-T
T ss_pred EEEECcccCCC-CcEEEEEEEeCC
Confidence 44555665311 235555555554
No 212
>COG5510 Predicted small secreted protein [Function unknown]
Probab=20.20 E-value=85 Score=19.03 Aligned_cols=23 Identities=17% Similarity=0.118 Sum_probs=15.1
Q ss_pred HHHHHHHHHHHhhccCCCCCCCC
Q psy531 17 ISLQVLLIITLVHFKGVSPDISN 39 (80)
Q Consensus 17 ~~~~~ll~i~l~~~sg~~g~~~~ 39 (80)
|++.++.+.+|-.|-...|..+|
T Consensus 9 i~~vll~s~llaaCNT~rG~G~D 31 (44)
T COG5510 9 IALVLLASTLLAACNTMRGAGKD 31 (44)
T ss_pred HHHHHHHHHHHHHhhhhhccchh
Confidence 67777888888777555554433
No 213
>PF13623 SurA_N_2: SurA N-terminal domain
Probab=20.07 E-value=2.3e+02 Score=19.82 Aligned_cols=34 Identities=15% Similarity=-0.018 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHhhccCCCCCCCCcceEEeecCCeE
Q psy531 17 ISLQVLLIITLVHFKGVSPDISNAVHITALLGESV 51 (80)
Q Consensus 17 ~~~~~ll~i~l~~~sg~~g~~~~P~~ltA~vGe~V 51 (80)
|+++||+.|+=-..++...-..++..+ |++.+.-
T Consensus 15 IglAL~aFIv~d~~~~~~~~~~~~~~V-G~VnGe~ 48 (145)
T PF13623_consen 15 IGLALFAFIVGDFRSGSGFFGSSQNVV-GEVNGEK 48 (145)
T ss_pred HHHHHHHHHHHHHhccCCCcCCCCCee-EeECCEE
Confidence 556666655422223222223445555 6665543
Done!