RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy531
(80 letters)
>gnl|CDD|180941 PRK07352, PRK07352, F0F1 ATP synthase subunit B; Validated.
Length = 174
Score = 29.5 bits (67), Expect = 0.10
Identities = 14/29 (48%), Positives = 18/29 (62%), Gaps = 3/29 (10%)
Query: 2 GMWLNLAFLETNLHHISLQVLLIITLVHF 30
G LNL LETNL I+L ++I L +F
Sbjct: 14 GFGLNLNLLETNL--INL-AIVIGLLYYF 39
>gnl|CDD|238138 cd00226, PRCH, Photosynthetic reaction center (RC) complex, subunit
H; RC is an integral membrane protein-pigment complex
which catalyzes light-induced reduction of ubiquinone to
ubiquinol, generating a transmembrane electrochemical
gradient of protons used to produce ATP by ATP synthase.
Subunit H is positioned mainly in the cytoplasm with one
transmembrane alpha helix. Provides proton transfer
pathway (water channels) connecting the terminal quinone
electron acceptor of RC, to the aqueous phase. Found in
photosynthetic bacteria: alpha, beta, and gamma
proteobacteria.
Length = 246
Score = 27.4 bits (61), Expect = 0.66
Identities = 14/52 (26%), Positives = 22/52 (42%), Gaps = 11/52 (21%)
Query: 3 MWLNLA-----FLETNLHHISLQVLLIITLVHFKGVSPDISNAVHITALLGE 49
+W++ +LE L VLL + K S+ V +TA+L E
Sbjct: 167 LWVDRPEQLFRYLEVELAGGGRTVLLPMGFAKVK------SDRVKVTAILSE 212
>gnl|CDD|129641 TIGR00550, nadA, quinolinate synthetase complex, A subunit. This
protein, termed NadA, plays a role in the synthesis of
pyridine, a precursor to NAD. The quinolinate
synthetase complex consists of A protein (this protein)
and B protein. B protein converts L-aspartate to
iminoaspartate, an unstable reaction product which in
the absence of A protein is spontaneously hydrolyzed to
form oxaloacetate. The A protein, NadA, converts
iminoaspartate to quinolate [Biosynthesis of cofactors,
prosthetic groups, and carriers, Pyridine nucleotides].
Length = 310
Score = 26.3 bits (58), Expect = 1.8
Identities = 16/54 (29%), Positives = 27/54 (50%), Gaps = 7/54 (12%)
Query: 24 IITLVHFKGVSPDISN-AVHITALLGESVVFNCGVDFPGDTPVPYVLQWEKKIV 76
I + + G S +++ A A + +VF CGV F G+T +L EK ++
Sbjct: 31 IQQIADYTGDSLELAQIAAKTDA---DIIVF-CGVHFMGET--AKILNPEKTVL 78
>gnl|CDD|226212 COG3687, COG3687, Predicted metal-dependent hydrolase [General
function prediction only].
Length = 280
Score = 26.3 bits (58), Expect = 1.9
Identities = 8/31 (25%), Positives = 16/31 (51%), Gaps = 1/31 (3%)
Query: 42 HITALLGESVVFNCGVDFPGDTPVPY-VLQW 71
H TA++ E ++ + + G PV + +W
Sbjct: 136 HFTAVMAEWILEHPQLLLVGADPVMLDLWRW 166
>gnl|CDD|214346 CHL00045, ccsA, cytochrome c biogenesis protein.
Length = 319
Score = 24.8 bits (55), Expect = 5.0
Identities = 10/21 (47%), Positives = 15/21 (71%)
Query: 10 LETNLHHISLQVLLIITLVHF 30
LE L HIS +L I+TL+++
Sbjct: 6 LEHILTHISFSLLSIVTLIYW 26
>gnl|CDD|183405 PRK12287, tqsA, pheromone autoinducer 2 transporter; Reviewed.
Length = 344
Score = 24.7 bits (54), Expect = 6.8
Identities = 12/31 (38%), Positives = 18/31 (58%)
Query: 39 NAVHITALLGESVVFNCGVDFPGDTPVPYVL 69
N + I +LG V+ CG+ F D VP++L
Sbjct: 9 NGLKIVIMLGMLVIILCGIRFAADIIVPFIL 39
>gnl|CDD|214653 smart00410, IG_like, Immunoglobulin like. IG domains that cannot
be classified into one of IGv1, IGc1, IGc2, IG.
Length = 85
Score = 24.0 bits (52), Expect = 7.3
Identities = 11/32 (34%), Positives = 14/32 (43%), Gaps = 4/32 (12%)
Query: 42 HITALLGESVVFNCGVDFPGDTPVPYVLQWEK 73
+T GESV +C +P P V W K
Sbjct: 3 SVTVKEGESVTLSCEAS---GSPPPEV-TWYK 30
>gnl|CDD|214652 smart00409, IG, Immunoglobulin.
Length = 85
Score = 24.0 bits (52), Expect = 7.3
Identities = 11/32 (34%), Positives = 14/32 (43%), Gaps = 4/32 (12%)
Query: 42 HITALLGESVVFNCGVDFPGDTPVPYVLQWEK 73
+T GESV +C +P P V W K
Sbjct: 3 SVTVKEGESVTLSCEAS---GSPPPEV-TWYK 30
>gnl|CDD|176962 CHL00019, atpF, ATP synthase CF0 B subunit.
Length = 184
Score = 24.4 bits (54), Expect = 7.5
Identities = 15/30 (50%), Positives = 20/30 (66%), Gaps = 4/30 (13%)
Query: 5 LNLAFLETNLHHISLQVLLIITLVHF-KGV 33
N LETNL I+L V+L + L++F KGV
Sbjct: 22 FNTDILETNL--INLSVVLGV-LIYFGKGV 48
>gnl|CDD|178207 PLN02597, PLN02597, phosphoenolpyruvate carboxykinase [ATP].
Length = 555
Score = 24.4 bits (53), Expect = 8.1
Identities = 10/20 (50%), Positives = 14/20 (70%), Gaps = 1/20 (5%)
Query: 35 PDISNAVHITALLGESVVFN 54
PDI NA+ +L E+VVF+
Sbjct: 303 PDIWNAIKFGTVL-ENVVFD 321
>gnl|CDD|223146 COG0068, HypF, Hydrogenase maturation factor [Posttranslational
modification, protein turnover, chaperones].
Length = 750
Score = 24.3 bits (53), Expect = 9.9
Identities = 13/39 (33%), Positives = 16/39 (41%), Gaps = 4/39 (10%)
Query: 12 TNLHHISLQVLLIITLV----HFKGVSPDISNAVHITAL 46
T LHH+ LQ L I V + G I N + L
Sbjct: 307 TPLHHLLLQESLDIPYVMTSANLPGEPMAIDNEEALEKL 345
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.324 0.140 0.439
Gapped
Lambda K H
0.267 0.0637 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 4,058,741
Number of extensions: 310630
Number of successful extensions: 253
Number of sequences better than 10.0: 1
Number of HSP's gapped: 253
Number of HSP's successfully gapped: 13
Length of query: 80
Length of database: 10,937,602
Length adjustment: 49
Effective length of query: 31
Effective length of database: 8,764,256
Effective search space: 271691936
Effective search space used: 271691936
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 53 (24.4 bits)