RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy531
(80 letters)
>d1dr9a1 b.1.1.1 (A:1-105) CD80, N-terminal domain {Human (Homo
sapiens) [TaxId: 9606]}
Length = 105
Score = 28.7 bits (63), Expect = 0.031
Identities = 6/31 (19%), Positives = 13/31 (41%)
Query: 41 VHITALLGESVVFNCGVDFPGDTPVPYVLQW 71
+H+T + E +CG + + + W
Sbjct: 2 IHVTKEVKEVATLSCGHNVSVEELAQTRIYW 32
>d1ncna_ b.1.1.1 (A:) CD86 (b7-2), N-terminal domain {Human (Homo
sapiens) [TaxId: 9606]}
Length = 110
Score = 28.7 bits (63), Expect = 0.042
Identities = 4/31 (12%), Positives = 11/31 (35%)
Query: 41 VHITALLGESVVFNCGVDFPGDTPVPYVLQW 71
+ I A E+ C + + ++ +
Sbjct: 2 LKIQAYFNETADLPCQFANSQNQSLSELVVF 32
>d1neua_ b.1.1.1 (A:) Myelin membrane adhesion molecule P0 {Rat
(Rattus norvegicus) [TaxId: 10116]}
Length = 119
Score = 27.9 bits (61), Expect = 0.066
Identities = 4/32 (12%), Positives = 7/32 (21%)
Query: 42 HITALLGESVVFNCGVDFPGDTPVPYVLQWEK 73
+ +G V +C W
Sbjct: 8 EVYGAVGSQVTLHCSFWSSEWVSDDISFTWRY 39
>d1pkoa_ b.1.1.1 (A:) Myelin oligodendrocyte glycoprotein (MOG)
{Rat (Rattus norvegicus) [TaxId: 10116]}
Length = 126
Score = 26.2 bits (56), Expect = 0.34
Identities = 6/30 (20%), Positives = 11/30 (36%)
Query: 42 HITALLGESVVFNCGVDFPGDTPVPYVLQW 71
I AL+G+ C + + V +
Sbjct: 11 PIRALVGDEAELPCRISPGKNATGMEVGWY 40
>d1qz1a3 b.1.1.4 (A:190-289) Neural cell adhesion molecule (NCAM)
{Rat (Rattus norvegicus) [TaxId: 10116]}
Length = 100
Score = 25.6 bits (55), Expect = 0.52
Identities = 11/29 (37%), Positives = 15/29 (51%), Gaps = 3/29 (10%)
Query: 33 VSPDIS---NAVHITALLGESVVFNCGVD 58
V P + + V+ TA LG+SV C D
Sbjct: 2 VPPTVQARQSIVNATANLGQSVTLVCDAD 30
>d2nxyb1 b.1.1.1 (B:1001-1097) CD4 V-set domains {Human (Homo
sapiens) [TaxId: 9606]}
Length = 97
Score = 24.4 bits (52), Expect = 1.2
Identities = 5/33 (15%), Positives = 10/33 (30%)
Query: 43 ITALLGESVVFNCGVDFPGDTPVPYVLQWEKKI 75
+ G++V C + + KI
Sbjct: 4 VLGKKGDTVELTCTASQKKSIQFHWKNSNQIKI 36
>d1cs6a3 b.1.1.4 (A:209-299) Axonin-1 {Chicken (Gallus gallus)
[TaxId: 9031]}
Length = 91
Score = 24.0 bits (51), Expect = 1.9
Identities = 8/30 (26%), Positives = 10/30 (33%), Gaps = 3/30 (10%)
Query: 42 HITALLGESVVFNCGVDFPGDTPVPYVLQW 71
AL G+ V C PVP +
Sbjct: 14 DTYALTGQMVTLECFAF---GNPVPQIKWR 40
>d1rhfa1 b.1.1.1 (A:7-97) Tyrosine-protein kinase receptor tyro3,
N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}
Length = 91
Score = 23.8 bits (50), Expect = 2.0
Identities = 7/29 (24%), Positives = 11/29 (37%), Gaps = 3/29 (10%)
Query: 43 ITALLGESVVFNCGVDFPGDTPVPYVLQW 71
+T G+ V NC V+ P +
Sbjct: 6 LTVSQGQPVKLNCSVE---GMEEPDIQWV 31
>d1x44a1 b.1.1.4 (A:8-97) Myosin-binding protein C, slow-type
{Human (Homo sapiens) [TaxId: 9606]}
Length = 90
Score = 24.0 bits (51), Expect = 2.0
Identities = 7/18 (38%), Positives = 7/18 (38%)
Query: 43 ITALLGESVVFNCGVDFP 60
TA GE V C V
Sbjct: 10 TTAYCGERVELECEVSED 27
>d1eaja_ b.1.1.1 (A:) Coxsackie virus and adenovirus receptor
(Car), domain 1 {Human (Homo sapiens) [TaxId: 9606]}
Length = 124
Score = 23.8 bits (50), Expect = 2.3
Identities = 6/32 (18%), Positives = 10/32 (31%)
Query: 42 HITALLGESVVFNCGVDFPGDTPVPYVLQWEK 73
I GE+ C + P ++W
Sbjct: 13 MIEKAKGETAYLPCKFTLSPEDQGPLDIEWLI 44
>d1nezg_ b.1.1.1 (G:) CD8 {Mouse (Mus musculus) [TaxId: 10090]}
Length = 122
Score = 23.9 bits (51), Expect = 2.7
Identities = 7/33 (21%), Positives = 11/33 (33%)
Query: 42 HITALLGESVVFNCGVDFPGDTPVPYVLQWEKK 74
+ A LG+ V C V ++ Q
Sbjct: 10 KMDAELGQKVDLVCEVLGSVSQGCSWLFQNSSS 42
>g1gg6.1 b.47.1.2 (A:,B:,C:) (alpha,gamma)-chymotrypsin(ogen) {Cow
(Bos taurus) [TaxId: 9913]}
Length = 238
Score = 23.9 bits (50), Expect = 2.8
Identities = 6/27 (22%), Positives = 11/27 (40%), Gaps = 1/27 (3%)
Query: 54 NCGVDFPGD-TPVPYVLQWEKKIVKNN 79
C PG V ++ W ++ + N
Sbjct: 212 TCSTSTPGVYARVTALVNWVQQTLAAN 238
>d1nbqa2 b.1.1.4 (A:130-233) Junction adhesion molecule, JAM,
C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}
Length = 104
Score = 23.4 bits (49), Expect = 3.1
Identities = 7/37 (18%), Positives = 11/37 (29%), Gaps = 3/37 (8%)
Query: 33 VSPDISNA-VHITALLGESVVFNCGVDFPGDTPVPYV 68
V P + +A +G V C +P
Sbjct: 1 VPPSKPTVNIPSSATIGNRAVLTCSE--QDGSPPSEY 35
>d1rjxb_ b.47.1.2 (B:) Plasmin(ogen), catalytic domain {Human (Homo
sapiens) [TaxId: 9606]}
Length = 247
Score = 23.5 bits (49), Expect = 3.8
Identities = 8/32 (25%), Positives = 14/32 (43%), Gaps = 2/32 (6%)
Query: 50 SVVFNCGV-DFPGD-TPVPYVLQWEKKIVKNN 79
S C + PG V + W + +++NN
Sbjct: 216 SWGLGCARPNKPGVYVRVSRFVTWIEGVMRNN 247
>d1epfa1 b.1.1.4 (A:1-97) Neural cell adhesion molecule (NCAM)
{Rat (Rattus norvegicus) [TaxId: 10116]}
Length = 97
Score = 23.1 bits (48), Expect = 4.0
Identities = 6/30 (20%), Positives = 7/30 (23%)
Query: 42 HITALLGESVVFNCGVDFPGDTPVPYVLQW 71
+GES F C V
Sbjct: 9 QGEISVGESKFFLCQVAGDAKDKDISWFSP 38
>d1ccza1 b.1.1.1 (A:1-93) CD2-binding domain of CD58, N-terminal
domain {Human (Homo sapiens) [TaxId: 9606]}
Length = 93
Score = 23.0 bits (48), Expect = 4.6
Identities = 4/19 (21%), Positives = 9/19 (47%)
Query: 43 ITALLGESVVFNCGVDFPG 61
I ++ +V F+ + P
Sbjct: 5 IYGVVYGNVTFHVPSNVPL 23
>d2ghvc1 d.318.1.1 (C:320-502) Spike protein S1 {SARS coronavirus
[TaxId: 227859]}
Length = 183
Score = 23.0 bits (49), Expect = 5.3
Identities = 7/17 (41%), Positives = 9/17 (52%)
Query: 62 DTPVPYVLQWEKKIVKN 78
T P V WE+K + N
Sbjct: 12 ATKFPSVYAWERKKISN 28
>d1cs6a4 b.1.1.4 (A:300-388) Axonin-1 {Chicken (Gallus gallus)
[TaxId: 9031]}
Length = 89
Score = 22.5 bits (47), Expect = 5.5
Identities = 6/26 (23%), Positives = 10/26 (38%), Gaps = 3/26 (11%)
Query: 43 ITALLGESVVFNCGVDFPGDTPVPYV 68
A +G + ++C P P V
Sbjct: 11 TEADIGSDLRWSCVAS---GKPRPAV 33
>d1hnga1 b.1.1.1 (A:2-99) CD2, first domain {Rat (Rattus
norvegicus) [TaxId: 10116]}
Length = 98
Score = 22.7 bits (48), Expect = 5.7
Identities = 7/36 (19%), Positives = 12/36 (33%), Gaps = 2/36 (5%)
Query: 43 ITALLGESVVFNCGVDFPGDTPVPYVLQWEKKIVKN 78
+ LG + N +F + V WE+
Sbjct: 5 VWGALGHGINLNI-PNFQMTDDIDEVR-WERGSTLV 38
>d2fdbp2 b.1.1.4 (P:2252-2360) Fibroblast growth factor receptor,
FGFR {Human (Homo sapiens), FGFR1 [TaxId: 9606]}
Length = 109
Score = 22.6 bits (47), Expect = 6.3
Identities = 11/38 (28%), Positives = 17/38 (44%), Gaps = 4/38 (10%)
Query: 43 ITALLGESVVFNCGVDFPGDTPVPYVLQWEKKIVKNNK 80
+ ++G V F C V P++ QW K + KN
Sbjct: 15 ASTVVGGDVEFVCKVY---SDAQPHI-QWIKHVEKNGS 48
>d1qfoa_ b.1.1.1 (A:) N-terminal domain of sialoadhesin {Mouse
(Mus musculus) [TaxId: 10090]}
Length = 118
Score = 22.5 bits (47), Expect = 6.3
Identities = 7/30 (23%), Positives = 13/30 (43%)
Query: 42 HITALLGESVVFNCGVDFPGDTPVPYVLQW 71
++ L G ++ C +P D PV +
Sbjct: 9 NVQGLSGSCLLIPCIFSYPADVPVSNGITA 38
>d1biha3 b.1.1.4 (A:210-306) Hemolin {Moth (Hyalophora cecropia)
[TaxId: 7123]}
Length = 97
Score = 22.2 bits (46), Expect = 7.6
Identities = 5/27 (18%), Positives = 9/27 (33%), Gaps = 3/27 (11%)
Query: 42 HITALLGESVVFNCGVDFPGDTPVPYV 68
+ A G+ + C P+ Y
Sbjct: 12 DMMAKAGDVTMIYCMYG---SNPMGYP 35
>d1gxea_ b.1.1.4 (A:) Cardiac myosin binding protein C, different
domains {Human (Homo sapiens) [TaxId: 9606]}
Length = 130
Score = 22.3 bits (46), Expect = 8.6
Identities = 6/39 (15%), Positives = 12/39 (30%), Gaps = 3/39 (7%)
Query: 43 ITALLGESVVFNCGVDFPGD-TPVPYVLQWEKKIVKNNK 80
I + G + + + GD P + + K
Sbjct: 19 IVVVAGNKLRLDVPIS--GDPAPTVIWQKAITQGNKAPA 55
>d1gsaa2 d.142.1.1 (A:123-314) Prokaryotic glutathione synthetase,
C-domain {Escherichia coli [TaxId: 562]}
Length = 192
Score = 22.5 bits (47), Expect = 9.1
Identities = 9/30 (30%), Positives = 11/30 (36%)
Query: 36 DISNAVHITALLGESVVFNCGVDFPGDTPV 65
D A I L E + G+D GD
Sbjct: 129 DWKIARQIGPTLKEKGLIFVGLDIIGDRLT 158
>d1tiua_ b.1.1.4 (A:) Twitchin {Human (Homo sapiens), Ig repeat 27
[TaxId: 9606]}
Length = 89
Score = 22.1 bits (46), Expect = 9.8
Identities = 4/18 (22%), Positives = 8/18 (44%)
Query: 43 ITALLGESVVFNCGVDFP 60
+ +GE+ F + P
Sbjct: 11 VEVFVGETAHFEIELSEP 28
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.324 0.140 0.439
Gapped
Lambda K H
0.267 0.0404 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 304,782
Number of extensions: 11036
Number of successful extensions: 89
Number of sequences better than 10.0: 1
Number of HSP's gapped: 89
Number of HSP's successfully gapped: 33
Length of query: 80
Length of database: 2,407,596
Length adjustment: 46
Effective length of query: 34
Effective length of database: 1,776,016
Effective search space: 60384544
Effective search space used: 60384544
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 47 (22.7 bits)