BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= psy5312
         (124 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|1J0T|A Chain A, The Solution Structure Of Molt-Inhibiting Hormone From The
           Kuruma Prawn
          Length = 78

 Score = 56.6 bits (135), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 26/75 (34%), Positives = 44/75 (58%), Gaps = 1/75 (1%)

Query: 46  SFFDIQCKGVY-DKSIFARLDRICEDCYDLFRAPQIHTLCRKDCFTSDYFKGCLEVLRLT 104
           SF D  C+GV  ++ I+ ++ R+CEDC ++FR P +  +CR  CF +++F  CL+     
Sbjct: 2   SFIDNTCRGVMGNRDIYKKVVRVCEDCTNIFRLPGLDGMCRNRCFYNEWFLICLKAANRE 61

Query: 105 DESDSIQADIMQLHG 119
           DE +  +  I  L+ 
Sbjct: 62  DEIEKFRVWISILNA 76


>pdb|1S6Y|A Chain A, 2.3a Crystal Structure Of Phospho-Beta-Glucosidase
          Length = 450

 Score = 26.9 bits (58), Expect = 3.0,   Method: Composition-based stats.
 Identities = 13/31 (41%), Positives = 17/31 (54%), Gaps = 2/31 (6%)

Query: 22  DQIQCSPVNTRNNNQIAGHPLSKRSFFDIQC 52
           D+    PVNTRNN  IA   +S  S  ++ C
Sbjct: 333 DKRDIQPVNTRNNGAIAS--ISAESAVEVNC 361


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.327    0.142    0.454 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,157,012
Number of Sequences: 62578
Number of extensions: 107840
Number of successful extensions: 253
Number of sequences better than 100.0: 2
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 252
Number of HSP's gapped (non-prelim): 2
length of query: 124
length of database: 14,973,337
effective HSP length: 85
effective length of query: 39
effective length of database: 9,654,207
effective search space: 376514073
effective search space used: 376514073
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 45 (21.9 bits)