Query psy5312
Match_columns 124
No_of_seqs 112 out of 123
Neff 3.6
Searched_HMMs 29240
Date Fri Aug 16 23:23:06 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy5312.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/5312hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1j0t_A MIH, MOLT-inhibiting ho 100.0 2.9E-41 9.8E-46 234.2 6.8 74 46-120 2-76 (78)
2 2ksl_A U1-agatoxin-TA1A; insec 89.4 0.36 1.2E-05 30.5 3.3 44 51-100 6-49 (51)
3 2ykz_A Cytochrome C'; electron 48.9 11 0.00038 26.1 2.5 21 58-78 106-126 (127)
4 1cpq_A Cytochrome C'; electron 47.7 12 0.00041 26.1 2.6 21 58-78 108-128 (129)
5 1gqa_A Cytochrome C'; electron 47.4 12 0.00041 26.1 2.6 21 58-78 109-129 (130)
6 1mqv_A Cytochrome C'; four-hel 45.0 14 0.00047 25.6 2.5 21 58-78 103-123 (125)
7 3de8_A Soluble cytochrome B562 40.2 16 0.00053 24.5 2.1 19 58-76 88-106 (106)
8 1z2q_A LM5-1; membrane protein 39.3 5 0.00017 26.4 -0.5 19 62-80 64-82 (84)
9 2j8w_A Cytochrome C'; heme, ir 39.0 19 0.00066 24.9 2.5 20 58-77 109-128 (129)
10 2ccy_A Cytochrome C; electron 37.3 21 0.00073 24.8 2.5 20 58-77 108-127 (128)
11 2rng_A BIG defensin; alpha-hel 34.5 6.7 0.00023 26.9 -0.5 14 80-93 48-61 (79)
12 3vrc_A Cytochrome C'; C-type c 29.5 34 0.0011 24.2 2.5 20 58-77 111-130 (131)
13 1s05_A Cytochrome C-556, C556; 28.3 14 0.00049 25.8 0.4 20 59-78 108-127 (129)
14 1x4u_A Zinc finger, FYVE domai 25.6 13 0.00046 24.2 -0.2 16 63-78 64-79 (84)
15 2yw8_A RUN and FYVE domain-con 24.9 16 0.00054 23.8 0.1 15 62-76 60-74 (82)
16 3r8s_4 50S ribosomal protein L 23.4 4.6 0.00016 24.3 -2.5 22 66-87 9-30 (38)
17 1vfy_A Phosphatidylinositol-3- 22.5 17 0.00058 23.1 -0.1 13 63-75 55-67 (73)
No 1
>1j0t_A MIH, MOLT-inhibiting hormone; alpha-helical protein, hormone/growth factor complex; NMR {Marsupenaeus japonicus} SCOP: a.163.1.1
Probab=100.00 E-value=2.9e-41 Score=234.19 Aligned_cols=74 Identities=34% Similarity=0.825 Sum_probs=72.9
Q ss_pred cccCCCCcccc-cHHHHHHHHhHHHHHhhhhcccchhhhhhhccCCchHHHHHHHHhcccCchHHHHHHHHHHhcC
Q psy5312 46 SFFDIQCKGVY-DKSIFARLDRICEDCYDLFRAPQIHTLCRKDCFTSDYFKGCLEVLRLTDESDSIQADIMQLHGV 120 (124)
Q Consensus 46 s~fD~sCkGvy-dR~lf~kLdRVCeDCyNLfR~p~v~~~CR~nCF~n~~F~~Cl~~L~l~de~e~~~~~v~~i~g~ 120 (124)
|+||++|||+| ||+||+||||||||||||||+|+|+++||+|||+|++|++|+++|+++||+++|++|| +|+||
T Consensus 2 ~~~d~~CkGvygdr~lf~kldrVCdDCyNLyR~p~v~~~CR~nCF~n~~F~~Cl~~l~~~de~~~~~~~i-~ilg~ 76 (78)
T 1j0t_A 2 SFIDNTCRGVMGNRDIYKKVVRVCEDCTNIFRLPGLDGMCRNRCFYNEWFLICLKAANREDEIEKFRVWI-SILNA 76 (78)
T ss_dssp CCSSSCCSSTTTCSSHHHHHHHHHHHHHHHHTCHHHHHHHTSSTTCSSHHHHHHHTTSCCSTHHHHHHHH-HHTTS
T ss_pred CccCCCCCcccCCHHHHHHHHHHHHHHHHHhcCccHHHHHHHhccCCHHHHHHHHHHhhhhHHHHHHHHH-HHHcC
Confidence 68999999999 9999999999999999999999999999999999999999999999999999999999 99986
No 2
>2ksl_A U1-agatoxin-TA1A; insecticidal toxin, spider toxin, neurotoxin, crustacean hyperglycemic hormone, MOLT-inhibiting hormone; NMR {Tegenaria agrestis}
Probab=89.41 E-value=0.36 Score=30.52 Aligned_cols=44 Identities=27% Similarity=0.728 Sum_probs=35.5
Q ss_pred CCcccccHHHHHHHHhHHHHHhhhhcccchhhhhhhccCCchHHHHHHHH
Q psy5312 51 QCKGVYDKSIFARLDRICEDCYDLFRAPQIHTLCRKDCFTSDYFKGCLEV 100 (124)
Q Consensus 51 sCkGvydR~lf~kLdRVCeDCyNLfR~p~v~~~CR~nCF~n~~F~~Cl~~ 100 (124)
-|+.-|--.-|.--..||..|+. + ...|...||.|+++..|-++
T Consensus 6 icrarmthkefnyksnvcngcgd-----q-vaaceaecfrndvytachea 49 (51)
T 2ksl_A 6 ICRARMTHKEFNYKSNVCNGCGD-----Q-VAACEAECFRNDVYTACHEA 49 (51)
T ss_dssp HHHHHSCHHHHHHHHHHHHHHCS-----C-HHHHHHTTSCSHHHHHHHHT
T ss_pred HHHHHhhHHHhcccccccccchh-----H-HHHHHHHHHhhhHHHHHHhh
Confidence 46666666678888899999975 3 45799999999999999875
No 3
>2ykz_A Cytochrome C'; electron transport, haemoprotein, 4-helix bundle; HET: PCA HEC; 0.84A {Achromobacter xylosoxidans} PDB: 3zqv_A* 2xlm_A* 1e83_A* 1e84_A* 1e86_A* 1e85_A* 2yld_A* 2yli_A* 1cgo_A* 2xle_A* 2xm0_A* 2xlw_A* 2xld_A* 2xm4_A* 2xlo_A* 2yl0_A* 2yl1_A* 2ylg_A* 3zqy_A* 2xl6_A* ...
Probab=48.88 E-value=11 Score=26.10 Aligned_cols=21 Identities=24% Similarity=0.694 Sum_probs=18.3
Q ss_pred HHHHHHHHhHHHHHhhhhccc
Q psy5312 58 KSIFARLDRICEDCYDLFRAP 78 (124)
Q Consensus 58 R~lf~kLdRVCeDCyNLfR~p 78 (124)
+.-|.++..-|..||.-||.+
T Consensus 106 ~~a~~~v~~sCkaCH~~yR~~ 126 (127)
T 2ykz_A 106 RAAFGDVGASCKACHDAYRKK 126 (127)
T ss_dssp HHHHHHHHHHHHHHHHHHBCC
T ss_pred HHHHHHHHHHHHHHHHHHccC
Confidence 457888999999999999976
No 4
>1cpq_A Cytochrome C'; electron transport; HET: HEM; 1.72A {Rhodobacter capsulatus} SCOP: a.24.3.2 PDB: 1eky_A 1nbb_A* 1rcp_A* 1cpr_A*
Probab=47.69 E-value=12 Score=26.11 Aligned_cols=21 Identities=24% Similarity=0.602 Sum_probs=18.0
Q ss_pred HHHHHHHHhHHHHHhhhhccc
Q psy5312 58 KSIFARLDRICEDCYDLFRAP 78 (124)
Q Consensus 58 R~lf~kLdRVCeDCyNLfR~p 78 (124)
+.-|.+|..-|..||.-||.+
T Consensus 108 ~~a~~~v~~~CkaCH~~yR~~ 128 (129)
T 1cpq_A 108 GAALQKLGGTCKACHDDYREE 128 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHBCC
T ss_pred HHHHHHHHhHHHHHHHHHccC
Confidence 356888889999999999975
No 5
>1gqa_A Cytochrome C'; electron transport, heme; HET: HEC; 1.8A {Rhodobacter sphaeroides} SCOP: a.24.3.2
Probab=47.43 E-value=12 Score=26.12 Aligned_cols=21 Identities=24% Similarity=0.602 Sum_probs=18.3
Q ss_pred HHHHHHHHhHHHHHhhhhccc
Q psy5312 58 KSIFARLDRICEDCYDLFRAP 78 (124)
Q Consensus 58 R~lf~kLdRVCeDCyNLfR~p 78 (124)
+.-|.++..-|..||.-||.+
T Consensus 109 ~~a~~~v~~sCkaCH~~yR~~ 129 (130)
T 1gqa_A 109 AAAVGKVGGTCKSCHDDFRVK 129 (130)
T ss_dssp HHHHHHHHHHHHHHHHHHBCC
T ss_pred HHHHHHHHhHHHHHHHHHccC
Confidence 457888899999999999975
No 6
>1mqv_A Cytochrome C'; four-helix bundle, electron transport; HET: HEM; 1.78A {Rhodopseudomonas palustris} SCOP: a.24.3.2 PDB: 1a7v_A*
Probab=44.97 E-value=14 Score=25.59 Aligned_cols=21 Identities=33% Similarity=0.520 Sum_probs=18.3
Q ss_pred HHHHHHHHhHHHHHhhhhccc
Q psy5312 58 KSIFARLDRICEDCYDLFRAP 78 (124)
Q Consensus 58 R~lf~kLdRVCeDCyNLfR~p 78 (124)
+.-|.++..-|..||.-||.+
T Consensus 103 ~~a~~~v~~sCkaCH~~yR~~ 123 (125)
T 1mqv_A 103 KANIGGVLGNCKSCHDDFRAK 123 (125)
T ss_dssp HHHHHHHHHHHHHHHHHHBCC
T ss_pred HHHHHHHHhHHHHHHHHHhcC
Confidence 456888999999999999976
No 7
>3de8_A Soluble cytochrome B562; Cu-stabilized dimeric superstructure, electron transport, heme, iron, metal-binding, periplasm, transport; HET: HEM; 1.72A {Escherichia coli} SCOP: a.24.3.1 PDB: 2qla_A* 3de9_A* 3c62_A* 3c63_A* 2bc5_A* 3l1m_A* 1qq3_A* 1apc_A 1qpu_A* 256b_A* 3foo_A* 3fop_A* 3nmi_A* 3nmj_A* 3nmk_A* 1lm3_B* 1m6t_A 1yyj_A 1yyx_A 3hnk_A* ...
Probab=40.22 E-value=16 Score=24.54 Aligned_cols=19 Identities=21% Similarity=0.609 Sum_probs=16.5
Q ss_pred HHHHHHHHhHHHHHhhhhc
Q psy5312 58 KSIFARLDRICEDCYDLFR 76 (124)
Q Consensus 58 R~lf~kLdRVCeDCyNLfR 76 (124)
+.-|.+|.-.|..||.-||
T Consensus 88 k~a~~~v~~~Ck~CH~~yR 106 (106)
T 3de8_A 88 QAAAEQLKTTCNACHQKYR 106 (106)
T ss_dssp HHHHHHTHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHhhC
Confidence 3578899999999999998
No 8
>1z2q_A LM5-1; membrane protein, FYVE domain, zinc-finger; NMR {Leishmania major}
Probab=39.26 E-value=5 Score=26.36 Aligned_cols=19 Identities=26% Similarity=0.852 Sum_probs=14.3
Q ss_pred HHHHhHHHHHhhhhcccch
Q psy5312 62 ARLDRICEDCYDLFRAPQI 80 (124)
Q Consensus 62 ~kLdRVCeDCyNLfR~p~v 80 (124)
.+-.|||+.||....+..+
T Consensus 64 ~~~~RVC~~C~~~l~~~~~ 82 (84)
T 1z2q_A 64 TEPERVCDACYLALRSSNM 82 (84)
T ss_dssp EEEEECCHHHHHHHHTSCC
T ss_pred CCCCEECHHHHHHHhhccc
Confidence 3557999999998876543
No 9
>2j8w_A Cytochrome C'; heme, iron, transport, metal-binding, electron transfer, electron transport; HET: HEM; 1.29A {Rubrivivax gelatinosus} SCOP: a.24.3.2 PDB: 1jaf_A* 2j9b_A*
Probab=38.95 E-value=19 Score=24.90 Aligned_cols=20 Identities=25% Similarity=0.599 Sum_probs=17.7
Q ss_pred HHHHHHHHhHHHHHhhhhcc
Q psy5312 58 KSIFARLDRICEDCYDLFRA 77 (124)
Q Consensus 58 R~lf~kLdRVCeDCyNLfR~ 77 (124)
+.-|.++..-|..||.-||.
T Consensus 109 ~~a~~~v~~sCkaCH~~yR~ 128 (129)
T 2j8w_A 109 KAAVGETGGACKGCHDKFKE 128 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHBC
T ss_pred HHHHHHHHHHHHHHHHHHcc
Confidence 45788899999999999996
No 10
>2ccy_A Cytochrome C; electron transport (heme protein); HET: HEM; 1.67A {Phaeospirillum molischianum} SCOP: a.24.3.2
Probab=37.30 E-value=21 Score=24.76 Aligned_cols=20 Identities=25% Similarity=0.627 Sum_probs=17.3
Q ss_pred HHHHHHHHhHHHHHhhhhcc
Q psy5312 58 KSIFARLDRICEDCYDLFRA 77 (124)
Q Consensus 58 R~lf~kLdRVCeDCyNLfR~ 77 (124)
+.-|.++..-|..||.-||.
T Consensus 108 ~~a~~~v~~~CkaCH~~yR~ 127 (128)
T 2ccy_A 108 KAQAAATGKVCKACHEEFKQ 127 (128)
T ss_dssp HHHHHHHHHHHHHHHHHHBC
T ss_pred HHHHHHHHhHHHHHHHHHcc
Confidence 35688889999999999996
No 11
>2rng_A BIG defensin; alpha-helices & beta-sheets, three disulfide bridges, antibiotic, antimicrobial, fungicide, secreted; NMR {Tachypleus tridentatus} PDB: 2rq2_A
Probab=34.46 E-value=6.7 Score=26.95 Aligned_cols=14 Identities=36% Similarity=0.985 Sum_probs=11.0
Q ss_pred hhhhhhhccCCchH
Q psy5312 80 IHTLCRKDCFTSDY 93 (124)
Q Consensus 80 v~~~CR~nCF~n~~ 93 (124)
...=||++||+.|+
T Consensus 48 nrGWCR~~Cfs~Ey 61 (79)
T 2rng_A 48 NRGWCRSKCFRHEY 61 (79)
T ss_dssp TTEEEESSCCTTCE
T ss_pred cCCcccchhcceee
Confidence 45679999998764
No 12
>3vrc_A Cytochrome C'; C-type cytpchrome, electron transport; HET: HEC PG4; 1.00A {Thermochromatium tepidum} PDB: 1bbh_A*
Probab=29.46 E-value=34 Score=24.16 Aligned_cols=20 Identities=40% Similarity=0.781 Sum_probs=17.4
Q ss_pred HHHHHHHHhHHHHHhhhhcc
Q psy5312 58 KSIFARLDRICEDCYDLFRA 77 (124)
Q Consensus 58 R~lf~kLdRVCeDCyNLfR~ 77 (124)
+.-|..+..-|..||.-||.
T Consensus 111 ~~a~~~vg~tCkaCH~~yR~ 130 (131)
T 3vrc_A 111 KSAFADVGAACKACHQKYRA 130 (131)
T ss_dssp HHHHHHHHHHHHHHHHHHBC
T ss_pred HHHHHHHHHHHHHHHHHHcC
Confidence 45788899999999999996
No 13
>1s05_A Cytochrome C-556, C556; THis is A model obtained by -restrained modeling and minimization., electron transport; HET: HEM; NMR {Rhodopseudomonas palustris} SCOP: a.24.3.2
Probab=28.30 E-value=14 Score=25.80 Aligned_cols=20 Identities=20% Similarity=0.639 Sum_probs=16.3
Q ss_pred HHHHHHHhHHHHHhhhhccc
Q psy5312 59 SIFARLDRICEDCYDLFRAP 78 (124)
Q Consensus 59 ~lf~kLdRVCeDCyNLfR~p 78 (124)
.-|..+..-|..||.-||.+
T Consensus 108 ~a~~~v~~~CkaCH~~yR~~ 127 (129)
T 1s05_A 108 AAMQPIGKACGNCHENFRDK 127 (129)
T ss_dssp HHTTTTTHHHHHHHHHSCCC
T ss_pred HHHHHHHhHHHHHHHHHhcC
Confidence 44666778899999999976
No 14
>1x4u_A Zinc finger, FYVE domain containing 27 isoform B; phosphoinositide binding, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=25.62 E-value=13 Score=24.16 Aligned_cols=16 Identities=13% Similarity=0.409 Sum_probs=12.6
Q ss_pred HHHhHHHHHhhhhccc
Q psy5312 63 RLDRICEDCYDLFRAP 78 (124)
Q Consensus 63 kLdRVCeDCyNLfR~p 78 (124)
+-.|||+.||....+-
T Consensus 64 ~~~RVC~~C~~~l~~~ 79 (84)
T 1x4u_A 64 ETVFVCASCNQTLSKS 79 (84)
T ss_dssp CCEEECHHHHHHHHSC
T ss_pred CccEECHHHHHHHhcc
Confidence 4579999999977543
No 15
>2yw8_A RUN and FYVE domain-containing protein 1; structure genomics, structural genomics, NPPSFA; 3.00A {Homo sapiens} PDB: 2yqm_A
Probab=24.86 E-value=16 Score=23.77 Aligned_cols=15 Identities=27% Similarity=0.742 Sum_probs=12.1
Q ss_pred HHHHhHHHHHhhhhc
Q psy5312 62 ARLDRICEDCYDLFR 76 (124)
Q Consensus 62 ~kLdRVCeDCyNLfR 76 (124)
.+-.|||+.||....
T Consensus 60 ~~~~RVC~~C~~~l~ 74 (82)
T 2yw8_A 60 PKPVRVCDSCHTLLL 74 (82)
T ss_dssp SSCEEECHHHHHHTT
T ss_pred CCcCEECHHHHHHHH
Confidence 456799999999764
No 16
>3r8s_4 50S ribosomal protein L36; protein biosynthesis, RNA, tRNA, transfer RNA, 23S ribosomal subunit, ribosome recycling factor, RRF, ribosome; 3.00A {Escherichia coli} PDB: 1p85_4 1p86_4 1vs8_4 1vs6_4 2aw4_4 2awb_4 1vt2_4 2i2v_4 2j28_4 2i2t_4* 2qao_4* 2qba_4* 2qbc_4* 2qbe_4 2qbg_4 2qbi_4* 2qbk_4* 2qov_4 2qox_4 2qoz_4* ...
Probab=23.44 E-value=4.6 Score=24.26 Aligned_cols=22 Identities=23% Similarity=0.697 Sum_probs=18.8
Q ss_pred hHHHHHhhhhcccchhhhhhhc
Q psy5312 66 RICEDCYDLFRAPQIHTLCRKD 87 (124)
Q Consensus 66 RVCeDCyNLfR~p~v~~~CR~n 87 (124)
.+|+||+=+=|.-.++..|.+|
T Consensus 9 ~~c~~C~vvrR~grv~Vick~n 30 (38)
T 3r8s_4 9 KLCRNCKIVKRDGVIRVICSAE 30 (38)
T ss_dssp CCSTTEEEEEETTEEEEEETTC
T ss_pred hhccCCeEEEECCEEEEEeCCC
Confidence 5799999999999999988754
No 17
>1vfy_A Phosphatidylinositol-3-phosphate binding FYVE domain of protein VPS27; endosome maturation, intracellular trafficking; 1.15A {Saccharomyces cerevisiae} SCOP: g.50.1.1
Probab=22.47 E-value=17 Score=23.10 Aligned_cols=13 Identities=23% Similarity=0.976 Sum_probs=10.5
Q ss_pred HHHhHHHHHhhhh
Q psy5312 63 RLDRICEDCYDLF 75 (124)
Q Consensus 63 kLdRVCeDCyNLf 75 (124)
+-.|||+.||..+
T Consensus 55 ~~~RVC~~C~~~l 67 (73)
T 1vfy_A 55 EPVRVCDSCFEDY 67 (73)
T ss_dssp EEEEECHHHHHHH
T ss_pred CCCEECHHHHHHH
Confidence 3469999999865
Done!