RPS-BLAST 2.2.26 [Sep-21-2011]

Database: CDD.v3.10 
           44,354 sequences; 10,937,602 total letters

Searching..................................................done

Query= psy5312
         (124 letters)



>gnl|CDD|216328 pfam01147, Crust_neurohorm, Crustacean CHH/MIH/GIH neurohormone
           family. 
          Length = 73

 Score =  106 bits (267), Expect = 1e-31
 Identities = 36/72 (50%), Positives = 50/72 (69%)

Query: 46  SFFDIQCKGVYDKSIFARLDRICEDCYDLFRAPQIHTLCRKDCFTSDYFKGCLEVLRLTD 105
           S FD  CKGVYD+ +F +LDR+CEDCY+LFR P + +LCR +CF+++ F  C+E L L D
Sbjct: 1   SIFDPSCKGVYDRDLFKKLDRVCEDCYNLFREPGVASLCRSNCFSNEVFLQCVEALLLED 60

Query: 106 ESDSIQADIMQL 117
           E +  +  I  L
Sbjct: 61  EIEEYRLWISIL 72


>gnl|CDD|165287 PHA02984, PHA02984, hypothetical protein; Provisional.
          Length = 286

 Score = 28.6 bits (64), Expect = 0.76
 Identities = 15/49 (30%), Positives = 24/49 (48%), Gaps = 4/49 (8%)

Query: 76  RAPQIH---TLCRKDCFTSDYFKGC-LEVLRLTDESDSIQADIMQLHGV 120
             P IH    +  +D F  + F G    + RL D+ D++  DI+ L+G 
Sbjct: 152 NCPFIHYKNIVFSEDSFVYNIFSGYKFALFRLFDDDDTLLEDIIILNGR 200


>gnl|CDD|234778 PRK00484, lysS, lysyl-tRNA synthetase; Reviewed.
          Length = 491

 Score = 28.1 bits (64), Expect = 1.0
 Identities = 12/48 (25%), Positives = 20/48 (41%), Gaps = 14/48 (29%)

Query: 37  IAGHPLSKR-----SFFDIQCKGVYDKS----IFARLDRICEDCYDLF 75
           +AG  + KR     SF  +Q     D S    ++   D + E+  + F
Sbjct: 59  VAGRVMLKRVMGKASFATLQ-----DGSGRIQLYVSKDDVGEEALEAF 101


>gnl|CDD|214331 CHL00002, matK, maturase K.
          Length = 504

 Score = 26.0 bits (58), Expect = 5.4
 Identities = 12/34 (35%), Positives = 17/34 (50%), Gaps = 5/34 (14%)

Query: 37  IAGHPLSKRSFFDIQCKGVYDKSIFARLDRICED 70
           + GHP+SK  + D+      D  I  R  RIC +
Sbjct: 382 VLGHPISKPVWTDLS-----DSDIIDRFGRICRN 410


>gnl|CDD|225343 COG2723, BglB,
           Beta-glucosidase/6-phospho-beta-glucosidase/beta-
           galactosidase [Carbohydrate transport and metabolism].
          Length = 460

 Score = 25.7 bits (57), Expect = 7.8
 Identities = 8/23 (34%), Positives = 11/23 (47%)

Query: 45  RSFFDIQCKGVYDKSIFARLDRI 67
           R F D Q KG Y + +   L+  
Sbjct: 250 RFFLDAQVKGEYPEYLEKELEEN 272


>gnl|CDD|143568 cd07459, CRD_TK_ROR_like, Cysteine-rich domain of tyrosine
          kinase-like orphan receptors.  The cysteine-rich domain
          (CRD) is an essential part of the tyrosine kinase-like
          orphan receptor (Ror) proteins, a conserved family of
          tyrosine kinases that function in various processes,
          including neuronal and skeletal development, cell
          polarity, and cell movement. Ror proteins are receptors
          of Wnt proteins, which are key players in a number of
          fundamental cellular processes in embryogenesis and
          postnatal development. In different cellular contexts,
          Ror proteins can either activate or repress
          transcription of Wnt target genes, and can modulate Wnt
          signaling by sequestering Wnt ligands. In addition, a
          number of Wnt-independent functions have been proposed
          for both Ror1 and Ror2.
          Length = 135

 Score = 25.0 bits (55), Expect = 8.5
 Identities = 5/18 (27%), Positives = 9/18 (50%)

Query: 71 CYDLFRAPQIHTLCRKDC 88
          C +    P+   +CR +C
Sbjct: 68 CDEGSSTPKPRRICRDEC 85


>gnl|CDD|233062 TIGR00630, uvra, excinuclease ABC, A subunit.  This family is a
           member of the ABC transporter superfamily of proteins of
           which all members for which functions are known except
           the UvrA proteins are involved in the transport of
           material through membranes. UvrA orthologs are involved
           in the recognition of DNA damage as a step in nucleotide
           excision repair. This family is based on the
           phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis,
           Stanford University) [DNA metabolism, DNA replication,
           recombination, and repair].
          Length = 925

 Score = 25.7 bits (57), Expect = 9.2
 Identities = 15/41 (36%), Positives = 21/41 (51%), Gaps = 8/41 (19%)

Query: 49  DIQCKGVYDKSIFARLDRICEDCYDLFRA-PQIH----TLC 84
           +++ KG   K+I   LD   E+ Y+ F A P I     TLC
Sbjct: 777 EVKYKG---KNIADVLDMTVEEAYEFFEAVPSISRKLQTLC 814


  Database: CDD.v3.10
    Posted date:  Mar 20, 2013  7:55 AM
  Number of letters in database: 10,937,602
  Number of sequences in database:  44,354
  
Lambda     K      H
   0.329    0.143    0.445 

Gapped
Lambda     K      H
   0.267   0.0686    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 5,973,812
Number of extensions: 489245
Number of successful extensions: 524
Number of sequences better than 10.0: 1
Number of HSP's gapped: 524
Number of HSP's successfully gapped: 15
Length of query: 124
Length of database: 10,937,602
Length adjustment: 85
Effective length of query: 39
Effective length of database: 7,167,512
Effective search space: 279532968
Effective search space used: 279532968
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 53 (24.3 bits)