RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy5312
         (124 letters)



>d1j0ta_ a.163.1.1 (A:) Mlt-inhibiting hormone (MIH) {Kuruma prawn
           (Marsupenaeus japonicus) [TaxId: 27405]}
          Length = 78

 Score =  104 bits (262), Expect = 1e-31
 Identities = 26/74 (35%), Positives = 44/74 (59%), Gaps = 1/74 (1%)

Query: 46  SFFDIQCKGVY-DKSIFARLDRICEDCYDLFRAPQIHTLCRKDCFTSDYFKGCLEVLRLT 104
           SF D  C+GV  ++ I+ ++ R+CEDC ++FR P +  +CR  CF +++F  CL+     
Sbjct: 2   SFIDNTCRGVMGNRDIYKKVVRVCEDCTNIFRLPGLDGMCRNRCFYNEWFLICLKAANRE 61

Query: 105 DESDSIQADIMQLH 118
           DE +  +  I  L+
Sbjct: 62  DEIEKFRVWISILN 75


>d1qnxa_ d.111.1.1 (A:) Insect allergen 5 (AG5) {Yellow jacket
           (Vespula vulgaris), Ves v 5 [TaxId: 7454]}
          Length = 209

 Score = 23.7 bits (50), Expect = 7.2
 Identities = 8/38 (21%), Positives = 15/38 (39%), Gaps = 3/38 (7%)

Query: 81  HTLCRKDCFTSDYFKGCLEVLRLTDESDSIQADIMQLH 118
           HT C+      +     +    LT +    + DI++ H
Sbjct: 19  HTACKYGSLKPNCGNKVVVSYGLTKQE---KQDILKEH 53


>d2qam41 g.42.1.1 (4:1-38) Ribosomal protein L36 {Escherichia coli
          [TaxId: 562]}
          Length = 38

 Score = 21.9 bits (47), Expect = 9.2
 Identities = 6/26 (23%), Positives = 13/26 (50%)

Query: 62 ARLDRICEDCYDLFRAPQIHTLCRKD 87
          A + ++C +C  + R   I  +C  +
Sbjct: 5  ASVKKLCRNCKIVKRDGVIRVICSAE 30


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.329    0.143    0.445 

Gapped
Lambda     K      H
   0.267   0.0737    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 450,340
Number of extensions: 18876
Number of successful extensions: 50
Number of sequences better than 10.0: 1
Number of HSP's gapped: 49
Number of HSP's successfully gapped: 7
Length of query: 124
Length of database: 2,407,596
Length adjustment: 75
Effective length of query: 49
Effective length of database: 1,377,846
Effective search space: 67514454
Effective search space used: 67514454
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 47 (21.9 bits)