Query psy5313
Match_columns 511
No_of_seqs 150 out of 255
Neff 4.9
Searched_HMMs 46136
Date Fri Aug 16 23:23:54 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy5313.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/5313hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2489|consensus 100.0 1E-190 2E-195 1473.9 36.4 502 4-510 20-553 (592)
2 PF05602 CLPTM1: Cleft lip and 100.0 8E-120 2E-124 957.8 37.3 401 10-415 2-438 (438)
3 PF04193 PQ-loop: PQ loop repe 94.2 0.035 7.6E-07 43.5 2.5 49 435-483 11-59 (61)
4 smart00679 CTNS Repeated motif 78.1 0.58 1.3E-05 32.1 -0.4 24 439-462 1-24 (32)
5 TIGR00951 2A43 Lysosomal Cysti 55.5 3.4 7.3E-05 41.1 -0.4 37 425-461 138-174 (220)
6 PF03083 MtN3_slv: Sugar efflu 47.5 10 0.00023 31.6 1.4 69 290-359 6-74 (87)
7 TIGR00951 2A43 Lysosomal Cysti 35.8 21 0.00046 35.5 1.7 42 426-467 3-45 (220)
8 KOG2913|consensus 29.3 21 0.00045 36.8 0.4 40 424-466 167-206 (260)
9 PF05193 Peptidase_M16_C: Pept 28.3 1.5E+02 0.0033 26.0 5.8 42 235-276 143-184 (184)
10 COG5102 SFT2 Membrane protein 27.8 37 0.00081 33.1 1.8 78 380-462 40-138 (201)
11 PF00810 ER_lumen_recept: ER l 26.3 25 0.00054 33.1 0.3 68 394-468 68-139 (147)
12 COG2846 Regulator of cell morp 24.9 43 0.00093 33.6 1.7 32 445-477 174-205 (221)
13 KOG3145|consensus 23.6 16 0.00035 38.6 -1.6 24 439-462 137-160 (372)
14 PF09125 COX2-transmemb: Cytoc 22.5 81 0.0018 23.4 2.3 21 5-25 15-35 (38)
15 PRK14748 kdpF potassium-transp 22.0 63 0.0014 22.7 1.6 22 396-417 6-27 (29)
No 1
>KOG2489|consensus
Probab=100.00 E-value=1e-190 Score=1473.86 Aligned_cols=502 Identities=41% Similarity=0.721 Sum_probs=476.0
Q ss_pred cccchHHHHHHHHHHHHHHHHhhhhhhcccCCCCCCCCccccc---cccCCCceEEEEEEeCCCCCC--CCCcceeeeec
Q psy5313 4 LSHISLSKIVISVGLGFMIHSVWSIYKLSLPPDCPVERTCLKS---SLLRNPKLELILFSSVKEKPT--GRDVELILEKK 78 (511)
Q Consensus 4 ~~~~s~t~i~~~iFl~Yi~~~iy~i~~lf~~~~c~~~~~c~~p---~~~~~~~LdL~VY~S~~~~~~--~~~~~lv~~~~ 78 (511)
+.|.+++.+++.+|++|+++++|.+++.+.+++|++..+|..| .+++|+.+||+||+|+++.++ -++..++|+.+
T Consensus 20 ~~~~~i~~~i~~~fi~y~~s~ff~~~~~~~~~~~~~~~~~~~~~~n~fp~g~~~dL~vy~s~~~~~~~~f~~~~li~~~~ 99 (592)
T KOG2489|consen 20 GFFQMIKGLISIAFISYMVSSFFRMSQLPTDRSCSGAAGCYQPALNLFPKGTLLDLHVYLSESRSPFNTFNNIALIWNVK 99 (592)
T ss_pred cHHHHHHHHHHHHHHHHHHHhhhccCCCCCCCCCCCccCCcCchhhcCCCCCeEEEEEEeccChhhhhccchhhhhheec
Confidence 4689999999999999999999999999999999876788766 566777799999999998852 22348999999
Q ss_pred CCCC-----CcceEEEEEEecCccccccceEEEEEEEeecCCCCCCCchhhhhccCcccceEEEEEecccccCCCc-ccc
Q psy5313 79 KFDY-----NQAFEENIKLNVPYKTRMNGTLFLHMFIIAHRPNQNWDWDSLARHSNQYEIKVYRKVPLSKYALPPD-RTF 152 (511)
Q Consensus 79 ~f~y-----~~~~~~~~~v~iP~~~~nNgtly~hv~~~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~Lt~y~vpk~-k~~ 152 (511)
+++| +++++++.++++|++++||||||+|+|+ .++|.+|++.++ .+++..++|.++||++|++|+. |++
T Consensus 100 ~l~y~dw~~d~~~~~~~~~~~p~~l~~NgslYlH~fl-~~~G~~~d~~~~----~~~~~~~v~~~~~l~~y~~~r~~kt~ 174 (592)
T KOG2489|consen 100 DLDYGDWTPDGSFEHDLNVKTPESLRNNGSLYLHVFL-AKAGQSPDPRDP----YYRDGKTVHLVHPLNKYKKPRAAKTF 174 (592)
T ss_pred CcccccccCCCceEEeeecCCcHHHhcCCeEEEEEEe-eccCCCCCccch----hhccCceEEEEeehhhhcccchhhhh
Confidence 9999 8999999999999999999999999999 789988887762 5678899999999999999986 899
Q ss_pred cCCCCCCCCc----------ccCcccceeecceEEEEeeccCcccCCCCChhhhcceeec--cceeeceEeechhhhccc
Q psy5313 153 HLLSEEGPQQ----------KSRKPVTHIKSLIEFNMLIDVHKFPRLEIPFELYNYFRIS--NNEFLPIVAYNLLNDRNT 220 (511)
Q Consensus 153 nLL~~~~~~~----------~~~~~vshw~pnlti~~v~d~~~~~~~~iP~~~~~~i~~~--~~~y~Pi~~~n~~w~~~~ 220 (511)
|||+|+++.+ ...|+++|||||++||+|+|++.|+++++||++++++.+. ++.|+||+++|++|+|++
T Consensus 175 nLL~~e~e~~~~E~~kKa~~~~~e~~shw~pnl~vnlv~D~~~~~k~~vPp~l~~~~~~~~~~~~YlPIlf~n~~wnl~k 254 (592)
T KOG2489|consen 175 NLLTGESETQVDEKLKKAESKKVEPVSHWRPNLTVNLVDDHTRWVKGSVPPPLAPYLIFLPKGEHYLPILFFNEYWNLQK 254 (592)
T ss_pred hhccCcchhcchhhhccchhccccchhcccCCceEEEeecCcccccCCCCCccchhheecCCCCceeeeEEechhhhhhc
Confidence 9999998832 2348999999999999999999999999999999999988 567999999999999999
Q ss_pred ceeeeCCCcceeEEEEEEeecchhHHHHHHHHHHHHHHHHHcCCCchhhhhHHhHhhccchhHHHHHHHHHHHHHHHHHh
Q psy5313 221 FLKEVKPDTNEMEIQFKYSPISYGKLRLMLHVEASFKSIAQMGFSDKEIDDVKSMFADTHLYVFLTTMVVSFVHLLFDFL 300 (511)
Q Consensus 221 ~l~~in~t~~~l~l~i~~~p~s~~k~~l~~~~~~~~~~~~~~g~~~~d~D~iK~~~~etn~ylL~~T~~vs~lH~vFefL 300 (511)
||+|||+|++++||+++|+|+|++|||||++++++.+.++++|+.+||.||+|++|+||||||||+|++||+||+|||||
T Consensus 255 dl~pInet~~el~Ltv~y~P~sv~K~ql~~~~~~~~q~~~~~g~~~kd~DEvK~~fleTN~yLL~vT~fVS~lH~vFdfL 334 (592)
T KOG2489|consen 255 DLMPINETTKELPLTVTYYPLSVFKLQLYASQQMASQWLQSFGFMEKDSDEVKGAFLETNPYLLAVTIFVSILHSVFDFL 334 (592)
T ss_pred ceEEccccccceeeEEEEEechHHHHHHHHHHHHHHHHHHHhcccccchHHHHHHHhcCchhhhhHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhccchhhhccCCCccccchhhHHHHhhhheeeeeeeecCCcceEEEeccccceeeeeeeeeEEEEEEe------ccccc
Q psy5313 301 AFKNDVSFWKNRKNTVGISVRSVMWRTFSQIVVFLYLLDENTSYLVLIPNGISGVIEVWKLLKIFKFDS------RSWRF 374 (511)
Q Consensus 301 AFKnDi~fWr~~k~~~GlS~rtv~~~~~~q~iIfLYL~D~~TS~lil~~~gig~lie~WKi~K~~~~~~------~~~~p 374 (511)
||||||||||+||||||||+|||+||||||+||||||+|||||+||++|+|+|++||+|||+|++++++ .|.+|
T Consensus 335 AFKNDIqFWn~rKsmeGLS~rsvl~~~F~s~IIflYllDneTs~mVlvs~gvG~~IE~WKi~K~m~v~id~~g~i~gv~p 414 (592)
T KOG2489|consen 335 AFKNDIQFWNKRKSMEGLSVRSVLWRCFSSLIIFLYLLDNETSFMVLVSVGVGLLIELWKIKKAMKVEIDWSGLIPGVLP 414 (592)
T ss_pred HhcchHHHhccccccccccHHHHHHHHHHHHhhhheeecCCccEEEEEeccceeeeeeeecceEEEEEEecccccccccc
Confidence 999999999999999999999999999999999999999999999999999999999999999999999 36667
Q ss_pred c--c-cCcchhhhhhhhhHHHHHHHHHHHHhHhhhhhhheeeeeccccceeeeehhhhhhhhhhhhhhhcccceeeeeec
Q psy5313 375 V--R-KTESAHERRTTAYDLEAMRYLSYILYPLCLATAVYSFVYSEHKSVYSWLLRSLVNAVYAFGFIFMLPQLFINYKL 451 (511)
Q Consensus 375 ~--~-~~~s~~e~~T~eyD~~A~kYLs~~l~Pl~~gyaiYSL~Y~~hksWYSw~i~sl~~~vY~FGFi~M~PQLfINYKL 451 (511)
| | ++.++.|++|++||++|||||||+|+|||+|||||||+|.||||||||+++||+|||||||||+|||||||||||
T Consensus 415 Rl~f~dkgsysE~~Tk~yD~~A~kYLs~~L~PL~vg~aVYSLlY~~hKsWYSWvLn~l~~~vy~FGFi~M~PQLFINYKL 494 (592)
T KOG2489|consen 415 RLSFSDKGSYSESKTKEYDDQAMKYLSYLLFPLLVGGAVYSLLYVEHKSWYSWVLNSLYNGVYAFGFIFMLPQLFINYKL 494 (592)
T ss_pred cccccccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccccHHHHHHHHHHhHHHHHHHHHhChHHHhhhhh
Confidence 7 4 889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccCchHHHHHhhhhhhhhhhhhhhhccccchhhhccccceeeeeeeehhccccccC
Q psy5313 452 KSVAHLPWRTFMYKAFNTFIDDVFAFLITMPTMHRLACFRDDIIFLIYLYQRCFEPAII 510 (511)
Q Consensus 452 KSVAhlPwr~~~YK~lNTfIDDlFAFvI~MP~~HRlacfRDDiVF~IyLYQrwiY~V~~ 510 (511)
|||||||||||||||+||||||+||||||||||||+|||||||||+|||||||+||||-
T Consensus 495 KSVAHLPWR~~tYKa~NTFIDDlFAFVIkMPt~hRl~CfRDDIVFlIYLYQRWlYpVD~ 553 (592)
T KOG2489|consen 495 KSVAHLPWRAFTYKAFNTFIDDLFAFVIKMPTLHRLACFRDDIVFLIYLYQRWLYPVDK 553 (592)
T ss_pred hhhhcCcHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhccceEEEeeehhhhccccCh
Confidence 99999999999999999999999999999999999999999999999999999999993
No 2
>PF05602 CLPTM1: Cleft lip and palate transmembrane protein 1 (CLPTM1); InterPro: IPR008429 Clefts of the lip and/or palate (CL/P) are some of the most common birth defects. They may be categorised into syndromic or non-syndromic types, with syndromic defects having an underlying chromosomal or teratogenic cause. Around 70% of clefts are non-syndromic and individuals have no typical physical or developmental abnormalities; these clefts generally show polygenetic behaviour and complex inheritance []. Studies have identified regions on chromosomes 19 and 11 which may be involved in non-syndromic cleft lip and palates; this included a novel gene on chromosome 19, cleft lip and palate-associated transmembrane protein 1 (CLPTM1) []. The Poliovirus receptor-related 1 gene (PVRL1), which is located on chromosome 11, has also been shown to associate with non-syndromic cleft lip and palates [, ]. CLPTM1 encodes a transmembrane protein and has strong homology to two Caenorhabditis elegans genes, suggesting that CLPTM1 may belong to a new gene family []. This family also contains the Homo sapiens cisplatin resistance related protein CRR9p which is associated with CDDP-induced apoptosis [].
Probab=100.00 E-value=8.2e-120 Score=957.82 Aligned_cols=401 Identities=37% Similarity=0.659 Sum_probs=373.2
Q ss_pred HHHHHHHHHHHHHHHhhhhhhcccCCCCCCCCc------------cccccccCCCceEEEEEEeCCCCC-CCCCcceeee
Q psy5313 10 SKIVISVGLGFMIHSVWSIYKLSLPPDCPVERT------------CLKSSLLRNPKLELILFSSVKEKP-TGRDVELILE 76 (511)
Q Consensus 10 t~i~~~iFl~Yi~~~iy~i~~lf~~~~c~~~~~------------c~~p~~~~~~~LdL~VY~S~~~~~-~~~~~~lv~~ 76 (511)
+++.++++.+|+++++|.++++|.++.|+++.+ |++|+|++|+++||+||+|+++++ ......++|+
T Consensus 2 s~~~~~i~~i~~~~~i~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~g~~ldL~vy~S~~~~~~~~~~~~lv~~ 81 (438)
T PF05602_consen 2 SSFWSIIFLIYIFHSIWYFMSLFFGPQCSPSPNCGSSGTPSGNPIPLRNLFPKGQPLDLYVYLSESEDFDSFSDSSLVWS 81 (438)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCccccccCCCccccccCCCCCCCEEEEEEEECCCCcccccccceeEe
Confidence 467899999999999999999999999975333 389999999999999999999885 2223349999
Q ss_pred ecCCCCCcceEE---EEEEecCccccccceEEEEEEEeecCCCCCCCchhhhhccCcccceEEEEEecccccCCC-cccc
Q psy5313 77 KKKFDYNQAFEE---NIKLNVPYKTRMNGTLFLHMFIIAHRPNQNWDWDSLARHSNQYEIKVYRKVPLSKYALPP-DRTF 152 (511)
Q Consensus 77 ~~~f~y~~~~~~---~~~v~iP~~~~nNgtly~hv~~~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~Lt~y~vpk-~k~~ 152 (511)
+++|+|++..++ ++++++|++++||||||+||++ .+.|.++++.+ ..+++...+|.++|||||++|+ ++++
T Consensus 82 ~~~~~y~~~~~~~~~~~t~~lp~~~~nNGSLylHv~l-~~~g~~~dp~~----~~y~~~~~~~~~~~Lt~Y~~~~~~~~~ 156 (438)
T PF05602_consen 82 EKNFDYGDWFERRNENLTFTLPESVRNNGSLYLHVFL-TKSGFSPDPTD----PNYDPSSVVHQSKPLTRYMPPKKAKTK 156 (438)
T ss_pred ecccccccCCCCcceeEEECCCHHHhcCCEEEEEEEE-ecCCCCCCCcc----cccCCCceEEEEEeceEeccCccchhh
Confidence 999999877666 9999999999999999999999 68999988765 3467888889999999999877 7899
Q ss_pred cCCCCCCCCc--------ccCcccceeecceEEEEeeccCcccCCCCChhhhcceeec-cce--eeceEeechhhhcccc
Q psy5313 153 HLLSEEGPQQ--------KSRKPVTHIKSLIEFNMLIDVHKFPRLEIPFELYNYFRIS-NNE--FLPIVAYNLLNDRNTF 221 (511)
Q Consensus 153 nLL~~~~~~~--------~~~~~vshw~pnlti~~v~d~~~~~~~~iP~~~~~~i~~~-~~~--y~Pi~~~n~~w~~~~~ 221 (511)
|||+|+++++ .+.++++|||||+||++|+|+++++.+++||+++++++++ +++ |+||+|+||||++++|
T Consensus 157 NLL~~~~~~~~~~~~~~~~~~~~vshw~pnltI~lV~D~~~~~~~~iP~~i~~~i~~~~~~~~~Y~Pivy~N~fw~l~~~ 236 (438)
T PF05602_consen 157 NLLSGKSEEEEEESEEAKEPVEPVSHWHPNLTINLVDDQTPYPKNQIPPEIRQYIRFNPDGQRVYLPIVYVNDFWLLRKD 236 (438)
T ss_pred cCCCCCCccccchhhhcccCCceeceeecceEEEEEccCCccccccCChhhHhhEEEccCCCccccCcEEechhhhhhhh
Confidence 9999988765 1346899999999999999999999999999999999999 444 9999999999999999
Q ss_pred eeeeCCCcceeEEEEEEeecchhHHHHHHHHHHHHHHHHHcCCCchhhhhHHhHhhccchhHHHHHHHHHHHHHHHHHhh
Q psy5313 222 LKEVKPDTNEMEIQFKYSPISYGKLRLMLHVEASFKSIAQMGFSDKEIDDVKSMFADTHLYVFLTTMVVSFVHLLFDFLA 301 (511)
Q Consensus 222 l~~in~t~~~l~l~i~~~p~s~~k~~l~~~~~~~~~~~~~~g~~~~d~D~iK~~~~etn~ylL~~T~~vs~lH~vFefLA 301 (511)
++|||+|++++||+|+|+|+|+||||+++||++++++++++|++++|+||+||||+|||||||++|++||+||+||||||
T Consensus 237 l~~in~t~~~l~l~i~~~p~s~~k~~l~~~~~~~~~~~~~~g~~~~~~d~~K~~~~etn~~lL~~t~~vs~lH~~f~fLA 316 (438)
T PF05602_consen 237 LVPINETVKELPLTISYSPISLWKWQLYAQMEQSFKQQQQMGFSEKDIDEIKRIFLETNPYLLALTFVVSLLHSVFDFLA 316 (438)
T ss_pred eeecCCCccceEEEEEEEecchHHHHHHHHHHHHHHHHHHhCCCcccHHHHHHHHhcCCHhhhHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hccchhhhccCCCccccchhhHHHHhhhheeeeeeeecCCcceEEEeccccceeeeeeeeeEEEEEEe--cccccc---c
Q psy5313 302 FKNDVSFWKNRKNTVGISVRSVMWRTFSQIVVFLYLLDENTSYLVLIPNGISGVIEVWKLLKIFKFDS--RSWRFV---R 376 (511)
Q Consensus 302 FKnDi~fWr~~k~~~GlS~rtv~~~~~~q~iIfLYL~D~~TS~lil~~~gig~lie~WKi~K~~~~~~--~~~~p~---~ 376 (511)
|||||+|||+||||+|||+|||++|||||+||||||+||||||||++|+|||++||+|||+|++++++ .|.+|+ +
T Consensus 317 FKnDi~fW~~~k~~~GlS~rtv~~~~~~~~iIfLYL~D~~ts~lil~~~gig~~ie~WKv~K~~~~~~~~~~~~p~~~~~ 396 (438)
T PF05602_consen 317 FKNDISFWRKRKSMEGLSVRTVLWNCFSQIIIFLYLLDNETSWLILVPSGIGLLIEAWKVTKALKVSIDWNGFFPYRISF 396 (438)
T ss_pred hhhHHHHHhccCCcccccHHHHHHHHHHHHheeeeEEeCCCcEEeehHhHhHHhHhheeeeEEEEEEEecCCCccceeee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999 578897 4
Q ss_pred -c--CcchhhhhhhhhHHHHHHHHHHHHhHhhhhhhheeeee
Q psy5313 377 -K--TESAHERRTTAYDLEAMRYLSYILYPLCLATAVYSFVY 415 (511)
Q Consensus 377 -~--~~s~~e~~T~eyD~~A~kYLs~~l~Pl~~gyaiYSL~Y 415 (511)
+ +.+++|++|+|||++|||||||+|+|||+|||||||+|
T Consensus 397 ~d~~~~~~~e~~T~~yD~~a~kyl~~~l~Pl~~gyaiYsL~Y 438 (438)
T PF05602_consen 397 KDKGKLSYEESKTKEYDAEAMKYLSYVLYPLCIGYAIYSLLY 438 (438)
T ss_pred ccccccchhhhhHHHHHHHHHHHHHHHHHHHHHHHhHHheeC
Confidence 3 47999999999999999999999999999999999998
No 3
>PF04193 PQ-loop: PQ loop repeat
Probab=94.24 E-value=0.035 Score=43.53 Aligned_cols=49 Identities=24% Similarity=0.345 Sum_probs=42.9
Q ss_pred hhhhhhcccceeeeeeccccccCchHHHHHhhhhhhhhhhhhhhhcccc
Q psy5313 435 AFGFIFMLPQLFINYKLKSVAHLPWRTFMYKAFNTFIDDVFAFLITMPT 483 (511)
Q Consensus 435 ~FGFi~M~PQLfINYKLKSVAhlPwr~~~YK~lNTfIDDlFAFvI~MP~ 483 (511)
...++...||++.|||.||+.+++.-++.--....+..-+.+++.+.|.
T Consensus 11 ~~~~~~~lPQi~~~~k~ks~~glS~~~~~l~~~g~~~~~~~~~~~~~~~ 59 (61)
T PF04193_consen 11 VLWIISFLPQIIKNYKRKSTGGLSLWFLLLWLIGSILWVLYSILSNYPF 59 (61)
T ss_pred HHHHHHHHhHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 4556778999999999999999999999999998888888888877764
No 4
>smart00679 CTNS Repeated motif present between transmembrane helices in cystinosin, yeast ERS1p, mannose-P-dolichol utilization defect 1, and other hypothetical proteins. Function unknown, but likely to be associated with the glycosylation machinery.
Probab=78.08 E-value=0.58 Score=32.12 Aligned_cols=24 Identities=33% Similarity=0.466 Sum_probs=19.9
Q ss_pred hhcccceeeeeeccccccCchHHH
Q psy5313 439 IFMLPQLFINYKLKSVAHLPWRTF 462 (511)
Q Consensus 439 i~M~PQLfINYKLKSVAhlPwr~~ 462 (511)
+...||++-|||.||+..++--++
T Consensus 1 ~~~~PQi~~~~~~ks~~glS~~~~ 24 (32)
T smart00679 1 VSLLPQIIKNYRRKSTEGLSILFV 24 (32)
T ss_pred CcchhHHHHHHHcCCcCcCCHHHH
Confidence 357899999999999999975544
No 5
>TIGR00951 2A43 Lysosomal Cystine Transporter.
Probab=55.51 E-value=3.4 Score=41.14 Aligned_cols=37 Identities=27% Similarity=0.275 Sum_probs=27.5
Q ss_pred ehhhhhhhhhhhhhhhcccceeeeeeccccccCchHH
Q psy5313 425 LLRSLVNAVYAFGFIFMLPQLFINYKLKSVAHLPWRT 461 (511)
Q Consensus 425 ~i~sl~~~vY~FGFi~M~PQLfINYKLKSVAhlPwr~ 461 (511)
++..|...=-..+++.-+||.+.|||-||..+++--.
T Consensus 138 ~l~~l~~iki~is~ikyiPQi~~Ny~~ksT~glSi~~ 174 (220)
T TIGR00951 138 FVTMLSYIKVAVTLVKYFPQAATNYHNKSTGQLSIIT 174 (220)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHhcCCCCcCCHHH
Confidence 3344433444566778899999999999999998543
No 6
>PF03083 MtN3_slv: Sugar efflux transporter for intercellular exchange; InterPro: IPR004316 This family includes proteins such as Drosophila saliva [], MtN3 involved in root nodule development [] and proteins involved in activation and expression of recombination activation genes (RAGs) []. Although the molecular function of these proteins is unknown, they are almost certainly transmembrane proteins. This signature maps to transmembrane helices which are found in two copies in most members of the family.; GO: 0016021 integral to membrane
Probab=47.49 E-value=10 Score=31.59 Aligned_cols=69 Identities=16% Similarity=0.220 Sum_probs=54.5
Q ss_pred HHHHHHHHHHhhhccchhhhccCCCccccchhhHHHHhhhheeeeeeeecCCcceEEEeccccceeeeee
Q psy5313 290 VSFVHLLFDFLAFKNDVSFWKNRKNTVGISVRSVMWRTFSQIVVFLYLLDENTSYLVLIPNGISGVIEVW 359 (511)
Q Consensus 290 vs~lH~vFefLAFKnDi~fWr~~k~~~GlS~rtv~~~~~~q~iIfLYL~D~~TS~lil~~~gig~lie~W 359 (511)
++..-++.-+++--.++.-++++|+.+++|....+..++....=+.|=+=- .++.|++++++|+++.+.
T Consensus 6 ~~~~~~i~~~~spl~~i~~v~k~ks~~~~~~~~~~~~~~~~~~W~~YG~l~-~d~~i~~~N~~g~~~~~~ 74 (87)
T PF03083_consen 6 LASVSSIIMFLSPLPQIRQVIKTKSTGSVSFPPFLAMFFNCVLWLIYGILI-NDWPIIVPNVFGLVLSII 74 (87)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCCCccceehhHHHhhhccHhhhhhhhc-CCeeEEeeHHHHHHHHHH
Confidence 345556667777778888899999999999999999999998888874422 246999999999887653
No 7
>TIGR00951 2A43 Lysosomal Cystine Transporter.
Probab=35.81 E-value=21 Score=35.54 Aligned_cols=42 Identities=24% Similarity=0.337 Sum_probs=30.7
Q ss_pred hhhhhhhhhhhh-hhhcccceeeeeeccccccCchHHHHHhhh
Q psy5313 426 LRSLVNAVYAFG-FIFMLPQLFINYKLKSVAHLPWRTFMYKAF 467 (511)
Q Consensus 426 i~sl~~~vY~FG-Fi~M~PQLfINYKLKSVAhlPwr~~~YK~l 467 (511)
++.+.|..|..+ .+...||++-|||-||+..++--++.-..+
T Consensus 3 iS~~lG~~~~~~~~~~~~PQi~~n~k~ks~~GlS~~~~~l~~~ 45 (220)
T TIGR00951 3 LSQILGWGYVAAWSISFYPQIIKNWRRKSAEGLSFDFVMLNLV 45 (220)
T ss_pred hHHHHHHHHHHHHHHHHhhHHHHHHhccccCCcCHHHHHHHHH
Confidence 445555555444 567789999999999999998877764433
No 8
>KOG2913|consensus
Probab=29.25 E-value=21 Score=36.75 Aligned_cols=40 Identities=28% Similarity=0.358 Sum_probs=31.4
Q ss_pred eehhhhhhhhhhhhhhhcccceeeeeeccccccCchHHHHHhh
Q psy5313 424 WLLRSLVNAVYAFGFIFMLPQLFINYKLKSVAHLPWRTFMYKA 466 (511)
Q Consensus 424 w~i~sl~~~vY~FGFi~M~PQLfINYKLKSVAhlPwr~~~YK~ 466 (511)
|++++|...+|.+|= .||+.+|||.||++.+--++|..-+
T Consensus 167 ~ilG~l~a~ly~~~r---IPQI~~n~~~~s~eGls~~~F~~~~ 206 (260)
T KOG2913|consen 167 AILGSLSALLYLGAR---IPQIILNHLRKSTEGLSLLAFAFNS 206 (260)
T ss_pred HHHHHHHHHHHcccc---cchhhhhhccCccchhHHHHHHHHH
Confidence 467777777887764 5999999999999988777665544
No 9
>PF05193 Peptidase_M16_C: Peptidase M16 inactive domain; InterPro: IPR007863 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. These metallopeptidases belong to MEROPS peptidase family M16 (clan ME). They include proteins, which are classified as non-peptidase homologues either have been found experimentally to be without peptidase activity, or lack amino acid residues that are believed to be essential for the catalytic activity. The peptidases in this group of sequences include: Insulinase, insulin-degrading enzyme (3.4.24.56 from EC) Mitochondrial processing peptidase alpha subunit, (Alpha-MPP, 3.4.24.64 from EC) Pitrlysin, Protease III precursor (3.4.24.55 from EC) Nardilysin, (3.4.24.61 from EC) Ubiquinol-cytochrome C reductase complex core protein I,mitochondrial precursor (1.10.2.2 from EC) Coenzyme PQQ synthesis protein F (3.4.99 from EC) These proteins do not share many regions of sequence similarity; the most noticeable is in the N-terminal section. This region includes a conserved histidine followed, two residues later by a glutamate and another histidine. In pitrilysin, it has been shown [] that this H-x-x-E-H motif is involved in enzymatic activity; the two histidines bind zinc and the glutamate is necessary for catalytic activity. The mitochondrial processing peptidase consists of two structurally related domains. One is the active peptidase whereas the other, the C-terminal region, is inactive. The two domains hold the substrate like a clamp [].; GO: 0004222 metalloendopeptidase activity, 0008270 zinc ion binding, 0006508 proteolysis; PDB: 1BE3_B 1PP9_B 2A06_B 1SQB_B 1SQP_B 1L0N_B 1SQX_B 1NU1_B 1L0L_B 2FYU_B ....
Probab=28.29 E-value=1.5e+02 Score=26.04 Aligned_cols=42 Identities=12% Similarity=0.222 Sum_probs=28.4
Q ss_pred EEEEeecchhHHHHHHHHHHHHHHHHHcCCCchhhhhHHhHh
Q psy5313 235 QFKYSPISYGKLRLMLHVEASFKSIAQMGFSDKEIDDVKSMF 276 (511)
Q Consensus 235 ~i~~~p~s~~k~~l~~~~~~~~~~~~~~g~~~~d~D~iK~~~ 276 (511)
.+....-+----++...+.+.++.+++.|++++|+|..|+.|
T Consensus 143 ~i~~~~~~~~~~~~~~~~~~~l~~l~~~~~s~~el~~~k~~L 184 (184)
T PF05193_consen 143 SISFQVTPENLDEAIEAILQELKRLREGGISEEELERAKNQL 184 (184)
T ss_dssp EEEEEEEGGGHHHHHHHHHHHHHHHHHHCS-HHHHHHHHHHH
T ss_pred EEEEEcCcccHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhcC
Confidence 333333333334466677788888888899999999999864
No 10
>COG5102 SFT2 Membrane protein involved in ER to Golgi transport [Intracellular trafficking and secretion]
Probab=27.79 E-value=37 Score=33.14 Aligned_cols=78 Identities=32% Similarity=0.505 Sum_probs=49.1
Q ss_pred chhhhhhhhhHHHH---------HHHHHHHHh--Hhhhhhhheeeee--------ccccceeeeehhhhhhhhhhhhhhh
Q psy5313 380 SAHERRTTAYDLEA---------MRYLSYILY--PLCLATAVYSFVY--------SEHKSVYSWLLRSLVNAVYAFGFIF 440 (511)
Q Consensus 380 s~~e~~T~eyD~~A---------~kYLs~~l~--Pl~~gyaiYSL~Y--------~~hksWYSw~i~sl~~~vY~FGFi~ 440 (511)
+|.+-+|++||-+- .|.=-++++ .|+.++|.|.+.| .|.|=--=|.+++|. +|.+|||++
T Consensus 40 dyq~~pt~~~dl~~~~q~s~F~Lsr~eR~vlF~~ClLGa~ac~a~~~fmfpVl~lkPrkFiLlwTmgslL-fvl~Fg~l~ 118 (201)
T COG5102 40 DYQMFPTRKYDLEHYFQSSEFGLSRFERAVLFSACLLGAGACSAFLYFMFPVLRLKPRKFILLWTMGSLL-FVLMFGFLL 118 (201)
T ss_pred ccccccccccccccccccchhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCccceeeehhHHHHH-HHHHHHHHH
Confidence 47888888888765 223333443 2566777776555 466666678888887 789999875
Q ss_pred cccceeeee--eccccccCchHHH
Q psy5313 441 MLPQLFINY--KLKSVAHLPWRTF 462 (511)
Q Consensus 441 M~PQLfINY--KLKSVAhlPwr~~ 462 (511)
=. .-| .|-|-..||-...
T Consensus 119 Gf----~ayl~~Lts~erlp~s~~ 138 (201)
T COG5102 119 GF----RAYLEGLTSKERLPHSSW 138 (201)
T ss_pred hH----HHHHHhhhhhhccchhHH
Confidence 32 222 2446667776543
No 11
>PF00810 ER_lumen_recept: ER lumen protein retaining receptor; InterPro: IPR000133 Proteins resident in the lumen of the endoplasmic reticulum (ER) contain a C-terminal tetrapeptide, commonly known as Lys-Asp-Glu-Leu (KDEL) in mammals and His-Asp-Glu-Leu (HDEL) in yeast (Saccharomyces cerevisiae) that acts as a signal for their retrieval from subsequent compartments of the secretory pathway. The receptor for this signal is a ~26 kDa Golgi membrane protein, initially identified as the ERD2 gene product in S. cerevisiae. The receptor molecule, known variously as the ER lumen protein retaining receptor or the 'KDEL receptor', is believed to cycle between the cis side of the Golgi apparatus and the ER. It has also been characterised in a number of other species, including plants, Plasmodium, Drosophila and mammals. In mammals, 2 highly related forms of the receptor are known. The KDEL receptor is a highly hydrophobic protein of 220 residues; its sequence exhibits 7 hydrophobic regions, all of which have been suggested to traverse the membrane []. More recently, however, it has been suggested that only 6 of these regions are transmembrane (TM), resulting in both N- and C-termini on the cytoplasmic side of the membrane.; GO: 0046923 ER retention sequence binding, 0006621 protein retention in ER lumen, 0016021 integral to membrane
Probab=26.31 E-value=25 Score=33.12 Aligned_cols=68 Identities=24% Similarity=0.388 Sum_probs=42.1
Q ss_pred HHHHHHHHhHhhhhhhheeeeeccccceeeeehhhhhhhhhhhhhhhcccceeeeeeccccccCchH----HHHHhhhh
Q psy5313 394 MRYLSYILYPLCLATAVYSFVYSEHKSVYSWLLRSLVNAVYAFGFIFMLPQLFINYKLKSVAHLPWR----TFMYKAFN 468 (511)
Q Consensus 394 ~kYLs~~l~Pl~~gyaiYSL~Y~~hksWYSw~i~sl~~~vY~FGFi~M~PQLfINYKLKSVAhlPwr----~~~YK~lN 468 (511)
++.. +++.|.++- +++.++.++| |+++.+-.+---.-=+.++|||+.-+|-+-|+-+=-. .-.||++.
T Consensus 68 f~~~-~li~p~~vL----a~i~~p~~~~--~~~ei~wtfSi~LEsvAIlPQL~m~~k~~~ve~ltshYv~~Lg~yR~ly 139 (147)
T PF00810_consen 68 FRLE-YLIVPCFVL----ALIFHPLNSF--FFLEILWTFSIYLESVAILPQLFMLQKTGEVENLTSHYVFALGLYRALY 139 (147)
T ss_pred hhhh-HHHHHHHHH----HHHHhccccc--hHHHHHHHHHHHHHHHHHhHHHHHHHHhcCeeehHHHHHHHHHHHHHHH
Confidence 5555 777777764 3344432233 5666666655555667899999999998877654332 33455554
No 12
>COG2846 Regulator of cell morphogenesis and NO signaling [Cell division and chromosome partitioning]
Probab=24.88 E-value=43 Score=33.57 Aligned_cols=32 Identities=34% Similarity=0.643 Sum_probs=22.5
Q ss_pred eeeeeeccccccCchHHHHHhhhhhhhhhhhhh
Q psy5313 445 LFINYKLKSVAHLPWRTFMYKAFNTFIDDVFAF 477 (511)
Q Consensus 445 LfINYKLKSVAhlPwr~~~YK~lNTfIDDlFAF 477 (511)
|==||-+=-=|==.||+ +|+-+|-||||++--
T Consensus 174 lT~n~tpP~~AC~tWka-lY~gl~~~~dDl~~H 205 (221)
T COG2846 174 LTNNYTPPEEACGTWKA-LYNGLNEFIDDLMEH 205 (221)
T ss_pred HhcCCCCChHHHhHHHH-HHHHHHHHHHHHHHH
Confidence 33455554455556987 599999999999754
No 13
>KOG3145|consensus
Probab=23.56 E-value=16 Score=38.55 Aligned_cols=24 Identities=33% Similarity=0.555 Sum_probs=20.4
Q ss_pred hhcccceeeeeeccccccCchHHH
Q psy5313 439 IFMLPQLFINYKLKSVAHLPWRTF 462 (511)
Q Consensus 439 i~M~PQLfINYKLKSVAhlPwr~~ 462 (511)
|.|-||++.|||=|||..|..-..
T Consensus 137 ISfYPqii~N~RrKSv~gLnfDFv 160 (372)
T KOG3145|consen 137 ISFYPQIILNWRRKSVVGLNFDFV 160 (372)
T ss_pred eeechHHHhhhhhcceecccccee
Confidence 347899999999999999987654
No 14
>PF09125 COX2-transmemb: Cytochrome C oxidase subunit II, transmembrane; InterPro: IPR015209 This N-terminal domain forms the transmembrane region in subunit II of cytochrome c oxidase from Thermus thermophilus. This domain adopts a tertiary structure consisting of two antiparallel transmembrane helices, in a transmembrane helix hairpin fold []. ; PDB: 1EHK_B 2QPE_B 3S8F_B 4EV3_B 3BVD_B 3S8G_B 3EH3_B 3S3C_B 3S39_B 3QJQ_B ....
Probab=22.47 E-value=81 Score=23.44 Aligned_cols=21 Identities=14% Similarity=0.176 Sum_probs=18.0
Q ss_pred ccchHHHHHHHHHHHHHHHHh
Q psy5313 5 SHISLSKIVISVGLGFMIHSV 25 (511)
Q Consensus 5 ~~~s~t~i~~~iFl~Yi~~~i 25 (511)
||.-|+....++|++.++|+.
T Consensus 15 ~Wi~F~l~mi~vFi~li~ytl 35 (38)
T PF09125_consen 15 GWIAFALAMILVFIALIGYTL 35 (38)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHH
Confidence 588899999999999988875
No 15
>PRK14748 kdpF potassium-transporting ATPase subunit F; Provisional
Probab=22.04 E-value=63 Score=22.74 Aligned_cols=22 Identities=27% Similarity=0.362 Sum_probs=18.5
Q ss_pred HHHHHHhHhhhhhhheeeeecc
Q psy5313 396 YLSYILYPLCLATAVYSFVYSE 417 (511)
Q Consensus 396 YLs~~l~Pl~~gyaiYSL~Y~~ 417 (511)
-...++.-+++||-+|.|++-|
T Consensus 6 i~G~ilv~lLlgYLvyALi~aE 27 (29)
T PRK14748 6 ITGVLLVFLLLGYLVYALINAE 27 (29)
T ss_pred HHHHHHHHHHHHHHHHHHhCcc
Confidence 3567889999999999999865
Done!