Query psy5313
Match_columns 511
No_of_seqs 150 out of 255
Neff 4.9
Searched_HMMs 29240
Date Fri Aug 16 23:24:17 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy5313.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/5313hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2dah_A Ubiquilin-3; UBA domain 13.8 1E+02 0.0034 23.1 2.3 26 253-280 10-35 (54)
2 2g3q_A Protein YBL047C; endocy 11.8 1.1E+02 0.0037 21.3 1.9 25 253-280 5-29 (43)
3 1q02_A Sequestosome 1; helical 11.3 1.3E+02 0.0044 22.9 2.2 17 251-267 9-25 (52)
4 2jy5_A Ubiquilin-1; UBA, alter 10.1 1.7E+02 0.0058 21.5 2.6 26 253-280 13-38 (52)
5 2bwb_A Ubiquitin-like protein 10.1 1.6E+02 0.0054 21.3 2.3 26 252-279 7-32 (46)
6 1z96_A DNA-damage, UBA-domain 9.8 2E+02 0.0068 19.3 2.6 25 253-280 5-29 (40)
7 1fad_A Protein (FADD protein); 9.1 2.5E+02 0.0087 22.6 3.5 25 251-275 23-48 (99)
8 2knz_A Ubiquilin-4; cytoplasm, 8.9 2.2E+02 0.0075 20.9 2.7 27 252-280 11-37 (53)
9 1wr1_B Ubiquitin-like protein 8.5 1.8E+02 0.006 22.2 2.1 27 252-280 17-43 (58)
10 1nkz_B Light-harvesting protei 7.5 2.8E+02 0.0094 20.1 2.6 24 263-286 2-25 (41)
No 1
>2dah_A Ubiquilin-3; UBA domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=13.77 E-value=1e+02 Score=23.14 Aligned_cols=26 Identities=19% Similarity=0.373 Sum_probs=16.6
Q ss_pred HHHHHHHHHcCCCchhhhhHHhHhhccc
Q psy5313 253 EASFKSIAQMGFSDKEIDDVKSMFADTH 280 (511)
Q Consensus 253 ~~~~~~~~~~g~~~~d~D~iK~~~~etn 280 (511)
++.+++++.|||++++ ..+++|..||
T Consensus 10 ~~~l~~L~~MGF~d~~--~n~~AL~~~~ 35 (54)
T 2dah_A 10 QVQLEQLRSMGFLNRE--ANLQALIATG 35 (54)
T ss_dssp HHHHHHHHHHTCCCHH--HHHHHHHHHT
T ss_pred HHHHHHHHHcCCCcHH--HHHHHHHHcC
Confidence 4567889999997654 3344554444
No 2
>2g3q_A Protein YBL047C; endocytosis, solution structure, UBA domain, endocytosis/signaling protein complex; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.1
Probab=11.82 E-value=1.1e+02 Score=21.34 Aligned_cols=25 Identities=12% Similarity=0.482 Sum_probs=16.5
Q ss_pred HHHHHHHHHcCCCchhhhhHHhHhhccc
Q psy5313 253 EASFKSIAQMGFSDKEIDDVKSMFADTH 280 (511)
Q Consensus 253 ~~~~~~~~~~g~~~~d~D~iK~~~~etn 280 (511)
+++++++..|||++ +..++++-.||
T Consensus 5 e~~i~~L~~MGF~~---~~a~~AL~~~~ 29 (43)
T 2g3q_A 5 SLAVEELSGMGFTE---EEAHNALEKCN 29 (43)
T ss_dssp HHHHHHHHTTTSCH---HHHHHHHHHHT
T ss_pred HHHHHHHHHcCCCH---HHHHHHHHHhC
Confidence 46678889999975 34445555443
No 3
>1q02_A Sequestosome 1; helical bundle, protein binding; NMR {Homo sapiens} SCOP: a.5.2.1 PDB: 2jy7_A 2jy8_A 2k0b_X 2knv_A 2rru_A 3b0f_A
Probab=11.30 E-value=1.3e+02 Score=22.92 Aligned_cols=17 Identities=35% Similarity=0.622 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHcCCCch
Q psy5313 251 HVEASFKSIAQMGFSDK 267 (511)
Q Consensus 251 ~~~~~~~~~~~~g~~~~ 267 (511)
.+.+++.+|.+|||+++
T Consensus 9 rl~~al~qMl~MGF~ne 25 (52)
T 1q02_A 9 RLIESLSQMLSMGFSDE 25 (52)
T ss_dssp HHHHHHHHHHTTTCCCT
T ss_pred HHHHHHHHHHHcCCCcc
Confidence 36788999999999743
No 4
>2jy5_A Ubiquilin-1; UBA, alternative splicing, cytoplasm, nucleus, phosphoprotein, proteasome, signaling protein; NMR {Homo sapiens} PDB: 2jy6_B
Probab=10.14 E-value=1.7e+02 Score=21.52 Aligned_cols=26 Identities=19% Similarity=0.386 Sum_probs=16.1
Q ss_pred HHHHHHHHHcCCCchhhhhHHhHhhccc
Q psy5313 253 EASFKSIAQMGFSDKEIDDVKSMFADTH 280 (511)
Q Consensus 253 ~~~~~~~~~~g~~~~d~D~iK~~~~etn 280 (511)
++.++++..|||++++ ..+++|..||
T Consensus 13 ~~~l~~L~~MGF~~~~--~~~~AL~~t~ 38 (52)
T 2jy5_A 13 QQQLEQLSAMGFLNRE--ANLQALIATG 38 (52)
T ss_dssp HHHHHHHHHTTCCCHH--HHHHHHHHHT
T ss_pred HHHHHHHHHcCCCCHH--HHHHHHHHhC
Confidence 4567889999995443 3444554443
No 5
>2bwb_A Ubiquitin-like protein DSK2; UBA, signaling protein; 2.3A {Saccharomyces cerevisiae} SCOP: a.5.2.1 PDB: 2bwe_A
Probab=10.10 E-value=1.6e+02 Score=21.27 Aligned_cols=26 Identities=19% Similarity=0.363 Sum_probs=16.3
Q ss_pred HHHHHHHHHHcCCCchhhhhHHhHhhcc
Q psy5313 252 VEASFKSIAQMGFSDKEIDDVKSMFADT 279 (511)
Q Consensus 252 ~~~~~~~~~~~g~~~~d~D~iK~~~~et 279 (511)
.++.++++..|||++.+ ..+++|..|
T Consensus 7 ~~~~i~~L~~MGF~d~~--~~~~AL~~~ 32 (46)
T 2bwb_A 7 YEHQLRQLNDMGFFDFD--RNVAALRRS 32 (46)
T ss_dssp THHHHHHHHHTTCCCHH--HHHHHHHHH
T ss_pred HHHHHHHHHHcCCCcHH--HHHHHHHHh
Confidence 45677889999996543 334444443
No 6
>1z96_A DNA-damage, UBA-domain protein MUD1; ubiquitin, three-helix bundle, protein transport; 1.80A {Schizosaccharomyces pombe} SCOP: a.5.2.1
Probab=9.79 E-value=2e+02 Score=19.26 Aligned_cols=25 Identities=12% Similarity=0.332 Sum_probs=16.8
Q ss_pred HHHHHHHHHcCCCchhhhhHHhHhhccc
Q psy5313 253 EASFKSIAQMGFSDKEIDDVKSMFADTH 280 (511)
Q Consensus 253 ~~~~~~~~~~g~~~~d~D~iK~~~~etn 280 (511)
++..+++..|||++ +..++++-.||
T Consensus 5 ~~~i~~L~~mGf~~---~~a~~AL~~~~ 29 (40)
T 1z96_A 5 NSKIAQLVSMGFDP---LEAAQALDAAN 29 (40)
T ss_dssp HHHHHHHHHTTCCH---HHHHHHHHHTT
T ss_pred HHHHHHHHHcCCCH---HHHHHHHHHcC
Confidence 45678888999975 34455666554
No 7
>1fad_A Protein (FADD protein); apoptosis, death domain; NMR {Mus musculus} SCOP: a.77.1.2
Probab=9.11 E-value=2.5e+02 Score=22.64 Aligned_cols=25 Identities=16% Similarity=0.429 Sum_probs=20.0
Q ss_pred HHHHHHHHH-HHcCCCchhhhhHHhH
Q psy5313 251 HVEASFKSI-AQMGFSDKEIDDVKSM 275 (511)
Q Consensus 251 ~~~~~~~~~-~~~g~~~~d~D~iK~~ 275 (511)
.+...|+.+ +.+|+++.|+|.|+.-
T Consensus 23 ~lg~~Wk~Lar~Lg~~~~~I~~I~~~ 48 (99)
T 1fad_A 23 NVGRDWKRLARELKVSEAKMDGIEEK 48 (99)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHhhhHHHHHHHcCCCHHHHHHHHHH
Confidence 566777765 7899999999999843
No 8
>2knz_A Ubiquilin-4; cytoplasm, endoplasmic reticulum, nucleus, phosphoprotein, protein binding; NMR {Mus musculus}
Probab=8.89 E-value=2.2e+02 Score=20.95 Aligned_cols=27 Identities=15% Similarity=0.353 Sum_probs=17.0
Q ss_pred HHHHHHHHHHcCCCchhhhhHHhHhhccc
Q psy5313 252 VEASFKSIAQMGFSDKEIDDVKSMFADTH 280 (511)
Q Consensus 252 ~~~~~~~~~~~g~~~~d~D~iK~~~~etn 280 (511)
.++.++++..|||+++ +..+++|..||
T Consensus 11 ~~~~l~~L~~MGF~~~--~~~~~AL~~t~ 37 (53)
T 2knz_A 11 FQQQLEQLNSMGFINR--EANLQALIATG 37 (53)
T ss_dssp HHHHHHHHHTTTCCCH--HHHHHHHHHHT
T ss_pred HHHHHHHHHHcCCCCH--HHHHHHHHHhC
Confidence 4566788899999543 34444555544
No 9
>1wr1_B Ubiquitin-like protein DSK2; UBA domain, UBA-ubiquitin complex, signaling protein; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.1
Probab=8.46 E-value=1.8e+02 Score=22.20 Aligned_cols=27 Identities=22% Similarity=0.357 Sum_probs=17.1
Q ss_pred HHHHHHHHHHcCCCchhhhhHHhHhhccc
Q psy5313 252 VEASFKSIAQMGFSDKEIDDVKSMFADTH 280 (511)
Q Consensus 252 ~~~~~~~~~~~g~~~~d~D~iK~~~~etn 280 (511)
.++.+++++.|||+++ +..+++|..||
T Consensus 17 ~~~qi~~L~~MGF~d~--~~~~~AL~~~~ 43 (58)
T 1wr1_B 17 YEHQLRQLNDMGFFDF--DRNVAALRRSG 43 (58)
T ss_dssp THHHHHHHHHHTCCCH--HHHHHHHHHHT
T ss_pred HHHHHHHHHHcCCCcH--HHHHHHHHHhC
Confidence 4567788999999654 34444554443
No 10
>1nkz_B Light-harvesting protein B-800/850, beta chain; light harvesting complex II, trans-membrane helices, rhodopi glucoside; HET: CXM RG1 BOG BCL; 2.00A {Rhodoblastus acidophilus} SCOP: f.3.1.1 PDB: 1kzu_B* 2fkw_B* 1ijd_B*
Probab=7.49 E-value=2.8e+02 Score=20.07 Aligned_cols=24 Identities=4% Similarity=0.094 Sum_probs=18.4
Q ss_pred CCCchhhhhHHhHhhccchhHHHH
Q psy5313 263 GFSDKEIDDVKSMFADTHLYVFLT 286 (511)
Q Consensus 263 g~~~~d~D~iK~~~~etn~ylL~~ 286 (511)
|.+++|..|+-+++.++=.-+.++
T Consensus 2 gLT~~EA~EfH~~~~~~~~~F~~i 25 (41)
T 1nkz_B 2 TLTAEQSEELHKYVIDGTRVFLGL 25 (41)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHH
Confidence 789999999999998764444433
Done!