Query psy5313
Match_columns 511
No_of_seqs 150 out of 255
Neff 4.9
Searched_HMMs 13730
Date Fri Aug 16 23:24:26 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy5313.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/5313hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2azeb1 e.63.1.2 (B:201-301) T 20.0 15 0.0011 29.3 1.0 15 484-498 51-65 (101)
2 d2daha1 a.5.2.1 (A:8-48) Ubiqu 12.5 34 0.0025 23.0 1.1 17 253-269 3-19 (41)
3 d2k0bx1 a.5.2.1 (X:1-52) Seque 11.8 53 0.0039 23.2 2.0 15 252-266 10-24 (52)
4 d1eg3a2 a.39.1.7 (A:210-306) D 11.4 20 0.0014 28.6 -0.5 7 481-487 86-92 (97)
5 d1iloa_ c.47.1.1 (A:) MTH985, 10.8 42 0.003 25.3 1.3 29 439-467 48-76 (77)
6 d2bwba1 a.5.2.1 (A:328-371) DS 10.4 73 0.0053 21.6 2.3 17 253-269 6-22 (44)
7 d1nu9c2 a.8.6.1 (C:146-281) St 8.5 47 0.0034 27.7 0.8 14 463-476 69-82 (136)
8 d2dnaa1 a.5.2.1 (A:12-61) Ubiq 7.7 96 0.007 21.5 2.1 17 253-269 9-25 (50)
9 d1xmeb2 f.17.2.1 (B:3-36) Bact 7.7 1.1E+02 0.0082 19.1 2.2 20 5-24 15-34 (34)
10 d1oqya1 a.5.2.1 (A:160-200) DN 7.6 1.3E+02 0.0092 19.8 2.6 25 252-279 4-28 (41)
No 1
>d2azeb1 e.63.1.2 (B:201-301) Transcription factor E2F1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=19.96 E-value=15 Score=29.33 Aligned_cols=15 Identities=13% Similarity=0.388 Sum_probs=12.7
Q ss_pred chhhhccccceeeee
Q psy5313 484 MHRLACFRDDIIFLI 498 (511)
Q Consensus 484 ~HRlacfRDDiVF~I 498 (511)
+++|+||+||.||-|
T Consensus 51 i~~i~~f~~~tviaI 65 (101)
T d2azeb1 51 LRSIADPAEQMVMVI 65 (101)
T ss_dssp HHTTSCTTTEEEEEE
T ss_pred HhhCCCcccceEEEE
Confidence 578899999998876
No 2
>d2daha1 a.5.2.1 (A:8-48) Ubiquilin-3 {Human (Homo sapiens) [TaxId: 9606]}
Probab=12.54 E-value=34 Score=22.99 Aligned_cols=17 Identities=24% Similarity=0.614 Sum_probs=12.6
Q ss_pred HHHHHHHHHcCCCchhh
Q psy5313 253 EASFKSIAQMGFSDKEI 269 (511)
Q Consensus 253 ~~~~~~~~~~g~~~~d~ 269 (511)
+..+++++.|||.+++.
T Consensus 3 ~~QL~~L~~MGF~d~~~ 19 (41)
T d2daha1 3 QVQLEQLRSMGFLNREA 19 (41)
T ss_dssp HHHHHHHHHHTCCCHHH
T ss_pred HHHHHHHHHcCCCCHHH
Confidence 45578899999986543
No 3
>d2k0bx1 a.5.2.1 (X:1-52) Sequestosome 1 (Sqstm1) {Human (Homo sapiens) [TaxId: 9606]}
Probab=11.82 E-value=53 Score=23.19 Aligned_cols=15 Identities=40% Similarity=0.665 Sum_probs=12.9
Q ss_pred HHHHHHHHHHcCCCc
Q psy5313 252 VEASFKSIAQMGFSD 266 (511)
Q Consensus 252 ~~~~~~~~~~~g~~~ 266 (511)
++++..+|.+|||++
T Consensus 10 l~~al~qM~aMGFsn 24 (52)
T d2k0bx1 10 LIESLSQMLSMGFSD 24 (52)
T ss_dssp HHHHHHHHHHHTCCC
T ss_pred HHHHHHHHHHcCCCC
Confidence 678899999999974
No 4
>d1eg3a2 a.39.1.7 (A:210-306) Dystrophin {Human (Homo sapiens) [TaxId: 9606]}
Probab=11.44 E-value=20 Score=28.57 Aligned_cols=7 Identities=43% Similarity=1.222 Sum_probs=2.7
Q ss_pred cccchhh
Q psy5313 481 MPTMHRL 487 (511)
Q Consensus 481 MP~~HRl 487 (511)
+|+|||+
T Consensus 86 Lp~lHRl 92 (97)
T d1eg3a2 86 LPVLHRV 92 (97)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 3333333
No 5
>d1iloa_ c.47.1.1 (A:) MTH985, a thioredoxin {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}
Probab=10.83 E-value=42 Score=25.30 Aligned_cols=29 Identities=21% Similarity=0.290 Sum_probs=23.5
Q ss_pred hhcccceeeeeeccccccCchHHHHHhhh
Q psy5313 439 IFMLPQLFINYKLKSVAHLPWRTFMYKAF 467 (511)
Q Consensus 439 i~M~PQLfINYKLKSVAhlPwr~~~YK~l 467 (511)
+|.||.|.||=++++.-..|=+.=+=+.|
T Consensus 48 VmstPalvIdg~vv~~G~vPs~~ei~~~L 76 (77)
T d1iloa_ 48 LTALPGLAVDGELKIMGRVASKEEIKKIL 76 (77)
T ss_dssp CSSSSCEEETTEEEECSSCCCHHHHHHHC
T ss_pred CcCCCEEEECCEEEEEecCCCHHHHHHHh
Confidence 68899999999999999998776554443
No 6
>d2bwba1 a.5.2.1 (A:328-371) DSK2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=10.41 E-value=73 Score=21.61 Aligned_cols=17 Identities=29% Similarity=0.552 Sum_probs=12.5
Q ss_pred HHHHHHHHHcCCCchhh
Q psy5313 253 EASFKSIAQMGFSDKEI 269 (511)
Q Consensus 253 ~~~~~~~~~~g~~~~d~ 269 (511)
+..+++++.|||.+.|.
T Consensus 6 ~~QL~qL~~MGF~d~~~ 22 (44)
T d2bwba1 6 EHQLRQLNDMGFFDFDR 22 (44)
T ss_dssp HHHHHHHHHTTCCCHHH
T ss_pred HHHHHHHHHcCCCcHHH
Confidence 45678899999976543
No 7
>d1nu9c2 a.8.6.1 (C:146-281) Staphylocoagulase {Staphylococcus aureus [TaxId: 1280]}
Probab=8.55 E-value=47 Score=27.68 Aligned_cols=14 Identities=36% Similarity=0.705 Sum_probs=11.2
Q ss_pred HHhhhhhhhhhhhh
Q psy5313 463 MYKAFNTFIDDVFA 476 (511)
Q Consensus 463 ~YK~lNTfIDDlFA 476 (511)
|=+=||+.|||.|-
T Consensus 69 m~~DLeSIIDdFF~ 82 (136)
T d1nu9c2 69 MIKDLESIIEDFFI 82 (136)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 55678999999885
No 8
>d2dnaa1 a.5.2.1 (A:12-61) Ubiquilin-like protein Ubqlnl {Mouse (Mus musculus) [TaxId: 10090]}
Probab=7.75 E-value=96 Score=21.55 Aligned_cols=17 Identities=18% Similarity=0.440 Sum_probs=12.4
Q ss_pred HHHHHHHHHcCCCchhh
Q psy5313 253 EASFKSIAQMGFSDKEI 269 (511)
Q Consensus 253 ~~~~~~~~~~g~~~~d~ 269 (511)
+..+++++.|||.+.|.
T Consensus 9 ~~QL~qL~~MGF~d~~~ 25 (50)
T d2dnaa1 9 SKEMECLQAMGFVNYNA 25 (50)
T ss_dssp HHHHHHHHHHTCCCHHH
T ss_pred HHHHHHHHHcCCCCHHH
Confidence 45577889999976543
No 9
>d1xmeb2 f.17.2.1 (B:3-36) Bacterial ba3 type cytochrome c oxidase subunit II {Thermus thermophilus [TaxId: 274]}
Probab=7.70 E-value=1.1e+02 Score=19.11 Aligned_cols=20 Identities=10% Similarity=0.183 Sum_probs=14.4
Q ss_pred ccchHHHHHHHHHHHHHHHH
Q psy5313 5 SHISLSKIVISVGLGFMIHS 24 (511)
Q Consensus 5 ~~~s~t~i~~~iFl~Yi~~~ 24 (511)
||..|+....-+|++-++|+
T Consensus 15 gwlafslamlfvfialiayt 34 (34)
T d1xmeb2 15 GWLAFSLAMLFVFIALIAYT 34 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHhcC
Confidence 57777777777777777653
No 10
>d1oqya1 a.5.2.1 (A:160-200) DNA repair protein Hhr23a {Human (Homo sapiens) [TaxId: 9606]}
Probab=7.65 E-value=1.3e+02 Score=19.78 Aligned_cols=25 Identities=20% Similarity=0.388 Sum_probs=17.0
Q ss_pred HHHHHHHHHHcCCCchhhhhHHhHhhcc
Q psy5313 252 VEASFKSIAQMGFSDKEIDDVKSMFADT 279 (511)
Q Consensus 252 ~~~~~~~~~~~g~~~~d~D~iK~~~~et 279 (511)
++++.+++..|||+.+ ..+++|..|
T Consensus 4 ~e~~i~~L~~MGF~~~---~a~~AL~~~ 28 (41)
T d1oqya1 4 YETMLTEIMSMGYERE---RVVAALRAS 28 (41)
T ss_dssp HHHHHHHHHTTTCCSH---HHHHHHHHS
T ss_pred HHHHHHHHHHcCCCHH---HHHHHHHHh
Confidence 5788899999999854 334444443
Done!