RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy5313
(511 letters)
>gnl|CDD|218652 pfam05602, CLPTM1, Cleft lip and palate transmembrane protein 1
(CLPTM1). This family consists of several eukaryotic
cleft lip and palate transmembrane protein 1 sequences.
Cleft lip with or without cleft palate is a common birth
defect that is genetically complex. The nonsyndromic
forms have been studied genetically using linkage and
candidate-gene association studies with only partial
success in defining the loci responsible for orofacial
clefting. CLPTM1 encodes a transmembrane protein and has
strong homology to two Caenorhabditis elegans genes,
suggesting that CLPTM1 may belong to a new gene family.
This family also contains the human cisplatin resistance
related protein CRR9p which is associated with
CDDP-induced apoptosis.
Length = 437
Score = 298 bits (765), Expect = 2e-96
Identities = 123/430 (28%), Positives = 208/430 (48%), Gaps = 40/430 (9%)
Query: 21 MIHSVWSIYKLSLPPDCPVERT------------CLKSSLLRNPKLELILFSSVKEKPTG 68
+ +V + L P C V + + L+L +++S + P
Sbjct: 13 IFVAVQYLMSLFFGPPCTVAQNNGKSVQVSSVPQSYRPLWPNGELLDLSVYTSPSDNPPS 72
Query: 69 -RDVELILEKKKFDYNQAF---EENIKLNVPYKTRMNGTLFLHMFIIAHRPNQNWDWDSL 124
++L+ ++ FDY F E + + +P + + NG+L+LH+++ + D
Sbjct: 73 LSSLDLVWSEENFDYGNWFDRREITLTITIPKEVQNNGSLYLHVYL--GLSGYSLDPTDK 130
Query: 125 ARHSNQYEIKVYRKVPLSKYALPP-DRTFHLLSEEGPQQK--------SRKPVTHIKSLI 175
S + V+ PL+ Y + +LL + +++ K V+H +
Sbjct: 131 GYDSGK---AVHFVFPLTTYLPKKKVKKKNLLGGKSEKEEPEEEKTPAPDKIVSHWHPNL 187
Query: 176 EFNMLIDVHKFPRLEIPFELYNYFRISN---NEFLPIVAYNLLNDRNTFLKEVKPDTNEM 232
++++D F +IP + Y R+ + PI+ N + L E+ +
Sbjct: 188 TLSVVVDFGVFSLNQIPPAIARYLRVEPSGARWYYPILFVNEFWQLKSHLIEINETVKTL 247
Query: 233 EIQFKYSPISYGKLRLMLHVEASFKSIAQMGFSDKEIDDVKSMFADTHLYVFLTTMVVSF 292
+ SP+S K +L +E S K A++GF KE D+VK + DT+ Y+ T +VS
Sbjct: 248 PLNITLSPLSLWKFQLYASMEQSMKQQARLGFDGKEADEVKEILLDTNPYLLALTAIVSL 307
Query: 293 VHLLFDFLAFKNDVSFWKNRKNTVGISVRSVMWRTFSQIVVFLYLLDENTSYLVLIPNGI 352
+H++F+FLAFKND+ FW+N+K+ VG+SVRS++ F QI++FLYLLD TS+++L+ GI
Sbjct: 308 LHMVFEFLAFKNDIQFWRNKKSMVGLSVRSILANVFCQIIIFLYLLDNETSWMILVSQGI 367
Query: 353 SGVIEVWKLLKIFKF----DSRSWRFV---RKTESAHERRTTAYDLEAMRYLSYILYPLC 405
+IE WK+ K K + S +E +T YD A +YLSY L PL
Sbjct: 368 GLLIEAWKITKAVKVRIRWRGFIPYIEFEDKGKLSEYESKTKEYDDIAFKYLSYALVPLL 427
Query: 406 LATAVYSFVY 415
+A AVYS +Y
Sbjct: 428 VAYAVYSLLY 437
>gnl|CDD|180596 PRK06505, PRK06505, enoyl-(acyl carrier protein) reductase;
Provisional.
Length = 271
Score = 30.9 bits (70), Expect = 1.6
Identities = 18/49 (36%), Positives = 27/49 (55%), Gaps = 11/49 (22%)
Query: 243 YGKLRLMLHVEASFKSIAQMGFSDKEIDDVKSMFADTHLYVFLTTMVVS 291
+GKL ++H +GFSDK +++K +ADT F TMV+S
Sbjct: 83 WGKLDFVVHA---------IGFSDK--NELKGRYADTTRENFSRTMVIS 120
>gnl|CDD|225087 COG2176, PolC, DNA polymerase III, alpha subunit (gram-positive
type) [DNA replication, recombination, and repair].
Length = 1444
Score = 30.8 bits (70), Expect = 2.5
Identities = 24/115 (20%), Positives = 39/115 (33%), Gaps = 12/115 (10%)
Query: 199 FRISNNEFLPIVAYNLLNDR--NTFLKEVKPDTNEMEIQFKYSPISYGKLRLMLHVEASF 256
F E LPI Y L + F + V E +I+ + I+ ++ F
Sbjct: 47 FHFLFAETLPIEIYKELENALSEEFEQLVA--KVEFDIEVRNVDITEQ------EIQTYF 98
Query: 257 KSIAQMGFSDKEIDDVKSMFADTHLYVFLTTMVVSFVHLLFDFLAFKNDVSFWKN 311
K I + KS+ L V +++ V +F FKN +
Sbjct: 99 KKII--EQLSVKSPIFKSLLNKLKLKVKGNNILIEQVLNNPEFDHFKNKSPELQK 151
>gnl|CDD|234142 TIGR03187, DGQHR, DGQHR domain. This highly divergent,
uncharacterized domain has several absolutely conserved
residues, including a QR pair and FxxxN motif. Its most
striking feature, however, is a near invariant
pentapeptide motif DGQHR. Several different subfamilies
occur specifically as a part of DNA phosphorothioation
systems, previously called DND (DNA instability during
electrophoresis), while others (e.g. CPS_2936) occur in
other contexts suggestive of lateral gene transfer
(sporadic distribution of helicase-containing
cassettes). The region described by this model is about
280 amino acids in length; additional sequences show
local sequence similarity.
Length = 271
Score = 28.4 bits (64), Expect = 8.0
Identities = 14/84 (16%), Positives = 30/84 (35%), Gaps = 9/84 (10%)
Query: 258 SIAQMGFSDKEIDDVKSMFADTHLYVFLTTMVVS-------FVHLLFDFLAFKNDVSFWK 310
+I + F D +++ + +FAD +L ++ + L L +
Sbjct: 120 TIPVVFFIDLGLEEQQQIFADINLNAPKPKSLLYDLYDHRDPLARLARELNEDPSSPLFG 179
Query: 311 NRKN--TVGISVRSVMWRTFSQIV 332
+ +S S+ T S +V
Sbjct: 180 GIVDLEKSTLSANSIKLFTLSALV 203
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.327 0.140 0.429
Gapped
Lambda K H
0.267 0.0680 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 26,634,174
Number of extensions: 2652799
Number of successful extensions: 2876
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2870
Number of HSP's successfully gapped: 28
Length of query: 511
Length of database: 10,937,602
Length adjustment: 101
Effective length of query: 410
Effective length of database: 6,457,848
Effective search space: 2647717680
Effective search space used: 2647717680
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 61 (27.4 bits)