RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy5313
(511 letters)
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 49.9 bits (118), Expect = 2e-06
Identities = 77/565 (13%), Positives = 160/565 (28%), Gaps = 170/565 (30%)
Query: 47 SLLRNPKLELILFSSVKEKPTGRDVELILEKKKFDYNQAFEENIKLNVPYKTRMNGTLFL 106
S+L +++ I+ S T R +L K++ + EE
Sbjct: 44 SILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEE------------------ 85
Query: 107 HMFIIAHRPNQNWDWDSLARHSNQYEIKVYRKVPLSKYALPPDRTFHLLSEEGPQQKSR- 165
R N + + Q + Y DR ++ SR
Sbjct: 86 -----VLRINYKFLMSPIKTEQRQ------PSMMTRMYIEQRDRLYNDNQVFAKYNVSRL 134
Query: 166 KPVTHIKS-LIEFN---------ML--------IDVHKFPRLE--IPFELYNYFRISNNE 205
+P ++ L+E +L +DV +++ + F+++ + + N
Sbjct: 135 QPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIF-WLNLKNCN 193
Query: 206 FLPIVAYNLLNDRNTFLKEVKPDTNEME-----IQFKYSPISYGKLRLML---HVEA--- 254
+L L ++ P+ I+ + I RL+ +
Sbjct: 194 ----SPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLV 249
Query: 255 -----SFKSIAQMGFS--------DKEIDDVKSMFADTHLYVFLTTMVVSFVH-----LL 296
+ K+ S K++ D S TH + L ++ LL
Sbjct: 250 LLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTH--ISLDHHSMTLTPDEVKSLL 307
Query: 297 FDFL------------------------AFKNDVSFWKNRK--------NTVGISVRSV- 323
+L + ++ ++ W N K + S+ +
Sbjct: 308 LKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLE 367
Query: 324 ---MWRTFSQIVVFLYLLDENTSYLVLIPNGISGVIEV-WKLLKIFKFDSRSWRFVRKT- 378
+ F ++ VF + IP + ++ + W + + + +
Sbjct: 368 PAEYRKMFDRLSVF----PPS----AHIP---TILLSLIWFDVIKSDVMVVVNKLHKYSL 416
Query: 379 --ESAHERRTTAYDLEAMRYLSYILYPLCLATAVYSFV--YSEHKSVYSWLLRSLVNAVY 434
+ E + + YL + S V Y+ K+ S L Y
Sbjct: 417 VEKQPKESTISIPSI----YLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQY 472
Query: 435 AFGFI-------------FMLPQLFINY-----KLKSVAHLPWRTFMYKAFNTFID-DVF 475
+ I + +F+++ K++ + W NT +
Sbjct: 473 FYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQKIRHDS-TAWNASGS-ILNTLQQLKFY 530
Query: 476 AFLITM--PTMHRLACFRDDII-FL 497
I P RL + I+ FL
Sbjct: 531 KPYICDNDPKYERLV---NAILDFL 552
Score = 44.1 bits (103), Expect = 1e-04
Identities = 66/488 (13%), Positives = 157/488 (32%), Gaps = 111/488 (22%)
Query: 42 TCLKSSLLRNPKLEL-----ILFSSVKEKPTGRDVELILEKKKFDYNQAFEENIKLNVPY 96
T + + + K++ I + ++K + V +L+K + + + +
Sbjct: 164 TWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNI 223
Query: 97 KTRMNGTLFLHMFIIAHRPNQN--------WDWDSLARHSNQYEIKVYRKVPLSKY---- 144
K R++ ++ +P +N + A+ N + + + + +++
Sbjct: 224 KLRIHSIQAELRRLLKSKPYENCLLVLLNVQN----AKAWNAFNLSC-KILLTTRFKQVT 278
Query: 145 -ALPPDRTFHLLSEEGPQQKSRKPVTHIKSLIEFNMLIDVHKFPRLEIPFELY--NYFRI 201
L T H+ + +T + ++L+ ++P E+ N R+
Sbjct: 279 DFLSAATTTHISLDH-----HSMTLTPDEVK---SLLLKYLDCRPQDLPREVLTTNPRRL 330
Query: 202 SNNEFLPIVAYNLLNDRNTFLKEVKPDTNEMEIQFKYSPISYGKLRLMLHVEASFKSIAQ 261
S I+A ++ + T+ +K+ +L +E+S +
Sbjct: 331 S------IIAESIRDGLATW------------DNWKH----VNCDKLTTIIESSLNVL-- 366
Query: 262 MGFSDKEIDDVKSMFADTHLYVFLTTMVVSFVHLLFDFLAFKNDVSFWKNRKNT-VGISV 320
E + + MF L VF + + +
Sbjct: 367 ------EPAEYRKMFDR--LSVF---------------------------PPSAHIPTIL 391
Query: 321 RSVMWRTFSQIVVFLYLLDENTSYLVLIPNGISGVIEVWKLLKIFKFDSRSWRFVRKTES 380
S++W + V + ++++ Y ++ I + + K + + ++
Sbjct: 392 LSLIWFDVIKSDVMV-VVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIV 450
Query: 381 AHERRTTAYDLEAM------RYL-SYILYPLCLATAVYSFVYSEHKSVY---SWL---LR 427
H +D + + +Y S+I + L + + + V+ +L +R
Sbjct: 451 DHYNIPKTFDSDDLIPPYLDQYFYSHIGHH--LKNIEHPERMTLFRMVFLDFRFLEQKIR 508
Query: 428 SLVNAVYAFGFIFMLPQLFINYKLKSVAHLPWRTFMYKAFNTFIDDVFAFLITMPTMH-- 485
A A G I Q YK + P + A F+ + LI
Sbjct: 509 HDSTAWNASGSILNTLQQLKFYKPYICDNDPKYERLVNAILDFLPKIEENLICSKYTDLL 568
Query: 486 RLACFRDD 493
R+A +D
Sbjct: 569 RIALMAED 576
Score = 43.7 bits (102), Expect = 1e-04
Identities = 58/313 (18%), Positives = 99/313 (31%), Gaps = 87/313 (27%)
Query: 228 DTNEMEIQFKYSPI------SYGKLRLMLHVEASFKSIAQMGFSDKEIDD-VKSMFADTH 280
D E Q++Y I ++ V+ KSI S +EID + S A +
Sbjct: 8 DFETGEHQYQYKDILSVFEDAFVDNFDCKDVQDMPKSI----LSKEEIDHIIMSKDAVSG 63
Query: 281 LYVFLTTM-------VVSFVHLL----FDFLAFKNDVSFWKNRKN------TVGISVRSV 323
T+ V FV + + FL S K + + I R
Sbjct: 64 TLRLFWTLLSKQEEMVQKFVEEVLRINYKFLM-----SPIKTEQRQPSMMTRMYIEQRDR 118
Query: 324 MWRT--------------FSQIVVFLYLLDENTSYLVLIPNGISG------VIEVWKLLK 363
++ + ++ L L +++ +G+ G ++V K
Sbjct: 119 LYNDNQVFAKYNVSRLQPYLKLRQALLELRPA-KNVLI--DGVLGSGKTWVALDVCLSYK 175
Query: 364 I-FKFDSR-SWRFVRKTESAHERRTTAYDLEAMRYLSYILYPLCLATAVYSFVYSEHK-S 420
+ K D + W ++ S LE ++ L Y + P + + +S S
Sbjct: 176 VQCKMDFKIFWLNLKNCNSPET------VLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHS 229
Query: 421 VYSWLLRSLVNAVYAFGFIFMLPQLFINYKLKSVAHLPWRTFMYKAFN--------TFID 472
+ + L R L + Y L + L +V + AFN T
Sbjct: 230 IQAELRRLLKSKPYENC-------LLV---LLNV----QNAKAWNAFNLSCKILLTTRFK 275
Query: 473 DVFAFLITMPTMH 485
V FL T H
Sbjct: 276 QVTDFLSAATTTH 288
Score = 40.6 bits (94), Expect = 0.001
Identities = 45/259 (17%), Positives = 81/259 (31%), Gaps = 68/259 (26%)
Query: 27 SIYKLSLPPDCPVERTCLKSSLLRNPKLELILF-SSVK----------EKPTGRDVELIL 75
+I + SL L+ + R L +F S DV +++
Sbjct: 357 TIIESSL--------NVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVV 408
Query: 76 EK--KKFDYNQAFEENIK----LNVPYKTRMNGTLFLHMFIIAH-RPNQNWDWDS----- 123
K K + +E+ + + K ++ LH I+ H + +D D
Sbjct: 409 NKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPY 468
Query: 124 --------LARH---SNQYE-IKVYRKVPLSKYALPPDRTFHLLSEEGPQQKSRKPVTHI 171
+ H E + ++R V L F L +QK R T
Sbjct: 469 LDQYFYSHIGHHLKNIEHPERMTLFRMVFLD---------FRFL-----EQKIRHDSTAW 514
Query: 172 KSLIEF-NMLIDVHKFPRLEIPFELYNYFRISNN--EFLPIVAYNLLNDRNTFLKEVKPD 228
+ N L + + + I Y R+ N +FLP + NL+ + T D
Sbjct: 515 NASGSILNTLQQLKFY-KPYICDNDPKYERLVNAILDFLPKIEENLICSKYT-------D 566
Query: 229 TNEMEIQFKYSPISYGKLR 247
+ + + I +
Sbjct: 567 LLRIALMAEDEAIFEEAHK 585
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 49.7 bits (118), Expect = 2e-06
Identities = 45/257 (17%), Positives = 87/257 (33%), Gaps = 66/257 (25%)
Query: 241 ISYGKLRLMLHVEASFKSIA-QM--GFSDKEIDDVKSMFADTHLYVFLTTMVVSFVHLLF 297
+S+G L +L V + IA Q+ F+ + + AD + L+
Sbjct: 11 LSHGSLEHVLLVPTASFFIASQLQEQFNKILPEPTEGFAADDEP--------TTPAELVG 62
Query: 298 DFLAFKNDVSFWKNRKNTVG--ISVRSVMWRTFSQIVVFLYLLDENTSYLVLIPNGISGV 355
FL + + + VG V ++ F +L D + L+ + +
Sbjct: 63 KFLGYVSS----LVEPSKVGQFDQVLNLCLTEFEN--CYLEGNDIHALAAKLLQENDTTL 116
Query: 356 IEVWKLLKIFKFDSRSW---RFVRKTESA-------HERRTTA----------YDLEAMR 395
++ +L+K + +R F +K+ SA + A Y E +R
Sbjct: 117 VKTKELIKNY-ITARIMAKRPFDKKSNSALFRAVGEGNAQLVAIFGGQGNTDDY-FEELR 174
Query: 396 --YLSY-------------ILYPLCLATAVYSFVYSEHKSVYSWLLRS--------LVNA 432
Y +Y L L T V+++ ++ WL L++
Sbjct: 175 DLYQTYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQGLNILEWLENPSNTPDKDYLLSI 234
Query: 433 VYAFGFIFMLPQLFINY 449
+ I ++ QL +Y
Sbjct: 235 PISCPLIGVI-QL-AHY 249
Score = 43.5 bits (102), Expect = 2e-04
Identities = 85/544 (15%), Positives = 160/544 (29%), Gaps = 169/544 (31%)
Query: 3 ILSHISLS-KIVISVGLGFMIHSVWSIYKLSLPPDCPVERTCLK---SSLLRNPKLELIL 58
LSH SL +++ F+ + + LP P E ++ EL+
Sbjct: 10 TLSHGSLEHVLLVPTASFFIASQLQEQFNKILPE--PTEGFAADDEPTT-----PAELVG 62
Query: 59 -F----SSVKEKPTGRDVELILEKKKFDYNQAF--EENI-----KLNVPYKTRMNGTL-- 104
F SS+ E + +L ++ + +I KL T + T
Sbjct: 63 KFLGYVSSLVEPSKVGQFDQVLNLCLTEFENCYLEGNDIHALAAKLLQENDTTLVKTKEL 122
Query: 105 ---FLHMFIIAHRPNQNWDWDSLARHSNQYEIKVYRKVPLSKYAL-----PPDRTFHLLS 156
++ I+A RP +L R + ++ A+ D F L
Sbjct: 123 IKNYITARIMAKRPFDKKSNSALFRAVGEGNAQL--------VAIFGGQGNTDDYFEELR 174
Query: 157 EEGPQQKSRKPVTHIKSLIEF--NMLIDVHKFPRLEIPFELYNYFRISNNEFLPIVAYNL 214
+ ++ + LI+F L + + F + L I+ +
Sbjct: 175 D---LYQTYHV--LVGDLIKFSAETL-----SELIRTTLDAEKVF----TQGLNILEW-- 218
Query: 215 LNDRNTFLKEVKPDTNEMEIQFKYSPISYGKLRL--MLHVEASFKSIAQMGFSDKEIDDV 272
L + + PD + PIS + + + H + K +GF+ E+
Sbjct: 219 LENPSN-----TPDKD----YLLSIPISCPLIGVIQLAHYVVTAK---LLGFTPGELRSY 266
Query: 273 KSMFADTHLYVFLTTMVV-------SFVHLLFDFLAFKNDVSFW---------------- 309
A H +T + + SF + + V F+
Sbjct: 267 LKG-ATGHSQGLVTAVAIAETDSWESFFVSVRKAIT----VLFFIGVRCYEAYPNTSLPP 321
Query: 310 ----KNRKNTVGI-----SVRSVMWRTFSQIVVFLYLLDENTS-------YLVLIPNG-- 351
+ +N G+ S+ ++ +Q V Y+ N+ + L+ NG
Sbjct: 322 SILEDSLENNEGVPSPMLSISNL-----TQEQVQDYVNKTNSHLPAGKQVEISLV-NGAK 375
Query: 352 ---ISGVIE-----VWKLLKIF----------KFDSR----SWRFVRKT--------ESA 381
+SG + L K F R S RF+ A
Sbjct: 376 NLVVSGPPQSLYGLNLTLRKAKAPSGLDQSRIPFSERKLKFSNRFLPVASPFHSHLLVPA 435
Query: 382 HERRTTAYDLEAMRYLSYILYPLC-LATAVYSFVYSEH-KSVYSWLLRSLVNAVYAFGFI 439
+ DL + + + + VY + + + +V+ I
Sbjct: 436 SDLINK--DLVK----NNVSFNAKDIQIPVYDTFDGSDLRVLSGSISERIVDC------I 483
Query: 440 FMLP 443
LP
Sbjct: 484 IRLP 487
Score = 42.0 bits (98), Expect = 6e-04
Identities = 44/242 (18%), Positives = 81/242 (33%), Gaps = 68/242 (28%)
Query: 84 QAFEENIKLNVPYKTRMNGTLFLHMFIIAHRPNQNWDWDSLARHSNQYEIKVYRKVP--- 140
++F +++ + +F I R + + SL + ++ VP
Sbjct: 290 ESFFVSVRKAITV-----------LFFIGVRCYEAYPNTSLPPSILEDSLENNEGVPSPM 338
Query: 141 LS----------KYA------LPPDRTFHLLSEEGPQQKSRKPVT-HIKSLIEFNMLIDV 183
LS Y LP + + G + V+ +SL N+ +
Sbjct: 339 LSISNLTQEQVQDYVNKTNSHLPAGKQVEISLVNGAKNLV---VSGPPQSLYGLNLTLRK 395
Query: 184 HKFP----RLEIPFE---LYNYFRISNNEFLPIVA-YN--LLNDRNTFLKEVKPDTNEME 233
K P + IPF L + SN FLP+ + ++ LL + + + D +
Sbjct: 396 AKAPSGLDQSRIPFSERKL----KFSN-RFLPVASPFHSHLLVPASDLINK---DLVKNN 447
Query: 234 IQFKYS----PISY----GK-LRLMLHVEASF-KSIAQMGFSDKEID-DVKSMFADTHLY 282
+ F P+ Y G LR + S + I + + + F TH+
Sbjct: 448 VSFNAKDIQIPV-YDTFDGSDLR---VLSGSISERIVDCIIRLP-VKWETTTQFKATHIL 502
Query: 283 VF 284
F
Sbjct: 503 DF 504
Score = 28.9 bits (64), Expect = 5.5
Identities = 45/261 (17%), Positives = 69/261 (26%), Gaps = 97/261 (37%)
Query: 51 NPKLELILFSSVKEKPTGRDVELILEKKKFDYNQAFEENIKLNVPYKTRMNGTLFLHMFI 110
NP I F K K + ++ + D E+ K +N + F
Sbjct: 1668 NPVNLTIHFGGEKGKRIRENYSAMIFETIVDGKLKTEKIFK-------EINEHSTSYTF- 1719
Query: 111 IAHRPNQNWDWDSLARHSN-QYEIKVYRKVP---LSKYALPPDRTFHLLSEEGPQQKSRK 166
L+ Q P L + A F L +G
Sbjct: 1720 --RSEK-----GLLSATQFTQ---------PALTLMEKAA-----FEDLKSKGLIP---A 1755
Query: 167 PVT---HIKSL------------IEFNMLID-VHK--------FPRLEIPFELY-----N 197
T H SL + L++ V PR E+ Y N
Sbjct: 1756 DATFAGH--SLGEYAALASLADVMSIESLVEVVFYRGMTMQVAVPRDELGRSNYGMIAIN 1813
Query: 198 YFRIS------------------NNEFLPIVAYNLLN-------DRNTFLKEVKPDTNEM 232
R++ + IV YN+ N D L V N +
Sbjct: 1814 PGRVAASFSQEALQYVVERVGKRTGWLVEIVNYNVENQQYVAAGDLRA-LDTVTNVLNFI 1872
Query: 233 EIQFKYSPISYGKLRLMLHVE 253
++Q I +L+ L +E
Sbjct: 1873 KLQ----KIDIIELQKSLSLE 1889
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 31.1 bits (69), Expect = 0.49
Identities = 10/47 (21%), Positives = 14/47 (29%), Gaps = 22/47 (46%)
Query: 132 EIKVYRKV--PLSKYALPPDRTFHLLSEEGPQQKSRKPVTHIKSLIE 176
+K K+ L YA D P IK+ +E
Sbjct: 21 ALK---KLQASLKLYA--DDSA---------------PALAIKATME 47
Score = 28.0 bits (61), Expect = 5.4
Identities = 6/32 (18%), Positives = 14/32 (43%), Gaps = 5/32 (15%)
Query: 223 KEVKPDTNEMEIQFK-YSPISYGKLRLMLHVE 253
+ +K +++ K Y+ S L + +E
Sbjct: 20 QALK----KLQASLKLYADDSAPALAIKATME 47
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.327 0.140 0.429
Gapped
Lambda K H
0.267 0.0519 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 7,777,774
Number of extensions: 458101
Number of successful extensions: 1063
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1055
Number of HSP's successfully gapped: 16
Length of query: 511
Length of database: 6,701,793
Length adjustment: 98
Effective length of query: 413
Effective length of database: 3,965,535
Effective search space: 1637765955
Effective search space used: 1637765955
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 59 (27.0 bits)