RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy5313
         (511 letters)



>d2omoa1 d.58.4.11 (A:1-98) Hypothetical protein NE0621
           {Nitrosomonas europaea [TaxId: 915]}
          Length = 98

 Score = 26.9 bits (59), Expect = 2.0
 Identities = 15/81 (18%), Positives = 24/81 (29%), Gaps = 6/81 (7%)

Query: 79  KFDYNQAFEENIKLNVPYKTRMNGTLFLHMFIIAHRPNQNW------DWDSLARHSNQYE 132
           K D  +AF+E  ++N     R  G +   +   A  P +             A H     
Sbjct: 11  KTDKTEAFKEATRMNHEQSIREPGNMRFDILQSADDPTRFVLYEAYKTRKDAAAHKETAH 70

Query: 133 IKVYRKVPLSKYALPPDRTFH 153
              +R       A P     +
Sbjct: 71  YLTWRDTVADWMAEPRKGVIY 91


>d1srqa_ e.55.1.1 (A:) Rap1 GTPase-activating protein 1, Rap1GAP
           {Human (Homo sapiens) [TaxId: 9606]}
          Length = 336

 Score = 26.8 bits (59), Expect = 5.9
 Identities = 19/94 (20%), Positives = 32/94 (34%), Gaps = 16/94 (17%)

Query: 66  PTGRDVELILEKKKFDYNQA----FEENIKLNVPYKTRMNGTLFLHMFIIAHRPNQNWDW 121
           P        L++K+   N      F++    N P+   M  + FLH +++        D 
Sbjct: 196 PYTEGDAQQLQRKRHIGNDIVAVVFQDE---NTPFVPDMIASNFLHAYVVVQAEGGGPD- 251

Query: 122 DSLARHSNQYEIKVYRK--VPLSKYALPPDRTFH 153
                    Y++ V  +  VP     LP    F 
Sbjct: 252 ------GPLYKVSVTARDDVPFFGPPLPDPAVFR 279


>d1emsa1 d.13.1.1 (A:281-440) NIT-FHIT fusion protein, C-terminal
           domain {Nematode (Caenorhabditis elegans) [TaxId: 6239]}
          Length = 160

 Score = 26.3 bits (57), Expect = 6.0
 Identities = 10/62 (16%), Positives = 22/62 (35%)

Query: 250 LHVEASFKSIAQMGFSDKEIDDVKSMFADTHLYVFLTTMVVSFVHLLFDFLAFKNDVSFW 309
           LH+         + F+   I      ++  H +VF+    V+  H+L         ++  
Sbjct: 7   LHINEKSSETGGLKFARFNIPADHIFYSTPHSFVFVNLKPVTDGHVLVSPKRVVPRLTDL 66

Query: 310 KN 311
            +
Sbjct: 67  TD 68


>d3pccm_ b.3.6.1 (M:) Protocatechuate-3,4-dioxygenase, beta chain
          {Pseudomonas putida [TaxId: 303]}
          Length = 236

 Score = 26.2 bits (57), Expect = 9.4
 Identities = 7/24 (29%), Positives = 13/24 (54%)

Query: 45 KSSLLRNPKLELILFSSVKEKPTG 68
          K+S+ R+P+  L+       + TG
Sbjct: 25 KTSIARSPRQALVSIPQSISETTG 48


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.327    0.140    0.429 

Gapped
Lambda     K      H
   0.267   0.0542    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,935,611
Number of extensions: 92334
Number of successful extensions: 264
Number of sequences better than 10.0: 1
Number of HSP's gapped: 264
Number of HSP's successfully gapped: 9
Length of query: 511
Length of database: 2,407,596
Length adjustment: 89
Effective length of query: 422
Effective length of database: 1,185,626
Effective search space: 500334172
Effective search space used: 500334172
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 55 (25.4 bits)