Query psy5317
Match_columns 101
No_of_seqs 107 out of 407
Neff 5.5
Searched_HMMs 46136
Date Fri Aug 16 23:32:50 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy5317.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/5317hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2082|consensus 99.9 2.3E-25 5E-30 191.2 2.0 89 13-101 481-573 (1075)
2 KOG1288|consensus 99.9 1.4E-22 3.1E-27 173.0 3.9 92 9-100 353-449 (945)
3 TIGR00930 2a30 K-Cl cotranspor 99.7 3.9E-17 8.3E-22 143.4 5.9 95 6-100 365-464 (953)
4 KOG2083|consensus 99.7 4.2E-17 9E-22 137.5 4.0 93 9-101 297-394 (643)
5 TIGR00908 2A0305 ethanolamine 98.1 6.9E-06 1.5E-10 65.6 5.5 65 30-96 279-347 (442)
6 TIGR03810 arg_ornith_anti argi 98.1 8.9E-06 1.9E-10 65.9 6.1 62 28-91 279-344 (468)
7 TIGR00909 2A0306 amino acid tr 98.1 8.4E-06 1.8E-10 64.6 5.8 69 27-97 278-351 (429)
8 TIGR00906 2A0303 cationic amin 98.0 8.7E-06 1.9E-10 68.1 5.9 68 29-98 315-387 (557)
9 PRK11021 putative transporter; 97.9 1.9E-05 4.1E-10 62.7 5.7 61 29-91 262-326 (410)
10 PRK10836 lysine transporter; P 97.9 2.4E-05 5.3E-10 63.7 6.4 63 29-93 298-364 (489)
11 PRK11357 frlA putative fructos 97.9 1.6E-05 3.5E-10 63.7 5.2 69 28-98 281-354 (445)
12 TIGR00905 2A0302 transporter, 97.9 2.2E-05 4.7E-10 63.7 6.0 61 28-90 283-347 (473)
13 TIGR03428 ureacarb_perm permea 97.9 3.5E-05 7.5E-10 62.6 6.9 65 27-91 297-366 (475)
14 TIGR00907 2A0304 amino acid pe 97.9 4.1E-05 8.9E-10 61.9 6.9 62 30-91 307-373 (482)
15 PF00324 AA_permease: Amino ac 97.9 6.9E-07 1.5E-11 72.1 -3.7 70 25-95 286-359 (478)
16 TIGR00913 2A0310 amino acid pe 97.8 4.1E-05 8.8E-10 61.8 6.1 61 28-90 290-354 (478)
17 PRK15049 L-asparagine permease 97.8 4.2E-05 9.1E-10 63.0 6.2 61 29-91 305-369 (499)
18 TIGR00911 2A0308 L-type amino 97.8 3.2E-05 6.9E-10 63.1 5.2 68 28-97 318-390 (501)
19 TIGR01773 GABAperm gamma-amino 97.8 5.1E-05 1.1E-09 60.9 6.3 62 28-91 286-351 (452)
20 PF13520 AA_permease_2: Amino 97.8 0.00012 2.6E-09 57.7 7.7 62 26-89 271-336 (426)
21 PRK11387 S-methylmethionine tr 97.7 7.1E-05 1.5E-09 60.7 6.1 59 29-89 291-353 (471)
22 PRK10249 phenylalanine transpo 97.7 6.6E-05 1.4E-09 60.9 5.9 61 29-91 294-358 (458)
23 PRK10197 gamma-aminobutyrate t 97.7 9.8E-05 2.1E-09 59.7 6.1 61 29-91 267-331 (446)
24 PRK10238 aromatic amino acid t 97.7 0.0001 2.2E-09 59.7 6.1 61 29-91 285-349 (456)
25 PRK10644 arginine:agmatin anti 97.6 0.00014 3E-09 58.4 6.3 61 29-91 276-340 (445)
26 PRK10655 potE putrescine trans 97.6 0.00015 3.2E-09 58.0 5.9 61 28-90 273-337 (438)
27 PRK11049 D-alanine/D-serine/gl 97.6 0.00019 4.1E-09 58.3 6.2 58 28-87 295-356 (469)
28 KOG1286|consensus 97.5 0.00023 4.9E-09 60.4 6.4 63 30-94 323-389 (554)
29 PRK10580 proY putative proline 97.5 0.00026 5.7E-09 57.1 6.3 58 29-88 284-345 (457)
30 PRK10435 cadB lysine/cadaverin 97.4 0.0004 8.7E-09 55.8 6.3 58 29-88 272-333 (435)
31 COG0531 PotE Amino acid transp 97.4 0.00037 8.1E-09 54.9 5.9 61 26-88 285-350 (466)
32 TIGR03813 put_Glu_GABA_T putat 97.4 0.00059 1.3E-08 55.3 6.5 57 29-87 282-342 (474)
33 TIGR00910 2A0307_GadC glutamat 97.3 0.00049 1.1E-08 56.9 6.1 57 30-88 285-345 (507)
34 KOG1287|consensus 97.0 0.0017 3.7E-08 54.5 5.6 72 26-97 285-359 (479)
35 PRK10746 putative transport pr 96.9 0.0024 5.3E-08 52.0 5.9 54 29-84 285-342 (461)
36 COG0833 LysP Amino acid transp 96.5 0.0044 9.6E-08 52.8 5.1 62 30-93 328-393 (541)
37 KOG1289|consensus 96.2 0.0092 2E-07 50.9 5.3 57 35-91 347-408 (550)
38 PRK15238 inner membrane transp 95.6 0.03 6.5E-07 45.8 5.5 60 30-91 319-382 (496)
39 COG1113 AnsP Gamma-aminobutyra 93.9 0.037 8E-07 46.5 2.1 59 36-99 295-357 (462)
40 PHA02764 hypothetical protein; 64.3 7 0.00015 32.3 2.9 40 49-92 258-298 (399)
41 PF15061 DUF4538: Domain of un 41.0 43 0.00094 20.7 3.1 37 26-62 4-47 (58)
42 TIGR03782 Bac_Flav_CT_J Bacter 33.9 40 0.00087 27.4 2.6 27 46-72 36-65 (322)
43 TIGR03648 Na_symport_lg probab 33.4 75 0.0016 26.7 4.3 34 30-66 370-403 (552)
44 TIGR02121 Na_Pro_sym sodium/pr 28.6 80 0.0017 26.0 3.7 29 30-61 322-350 (487)
45 PF00474 SSF: Sodium:solute sy 28.3 2.3E+02 0.0049 22.3 6.1 34 30-66 296-329 (406)
46 PF01566 Nramp: Natural resist 24.7 51 0.0011 25.9 1.8 30 28-57 255-284 (358)
47 PF04854 DUF624: Protein of un 24.4 1.5E+02 0.0033 17.9 3.6 55 32-89 13-71 (77)
48 PRK10484 putative transporter; 24.1 1.4E+02 0.003 24.9 4.3 30 30-63 331-360 (523)
49 TIGR02458 CbtA cobalt transpor 23.9 1E+02 0.0022 23.8 3.2 32 30-61 5-36 (225)
50 COG0170 SEC59 Dolichol kinase 21.5 3.3E+02 0.0072 20.3 5.6 25 27-51 112-136 (216)
51 PF09490 CbtA: Probable cobalt 20.5 1.2E+02 0.0027 23.1 3.1 34 31-64 10-43 (227)
No 1
>KOG2082|consensus
Probab=99.90 E-value=2.3e-25 Score=191.21 Aligned_cols=89 Identities=22% Similarity=0.325 Sum_probs=84.9
Q ss_pred hhhhhhhhhhhcccchhHHHHHHHHhhHHHHHhhhhhhhHHHHHhhhCCCCccccccCcC-CC---chHHHHHHHHHHHH
Q psy5317 13 GLREYFESLELISAFSPLFYSAVLTSGLTCAFSSLQEAPRVFRHLSKDGLYPYIGWFGRG-KT---SRPHVLTTGIAAAF 88 (101)
Q Consensus 13 ~L~~~~~v~~~~s~~~~li~~Gi~~stlssaL~~l~gApRvLqAia~D~l~P~l~~f~~g-~~---~~A~llt~~i~~~~ 88 (101)
++.++..|....|++||+|++|.|.||++++||||+||||+|||||||+++|+++.|+|+ +| .||+++|.+||+++
T Consensus 481 sv~g~lVva~laWPsPwVi~IGsFlST~GAgLQsLtgAPRLLQAIAkD~IiPfL~~F~~~~~ngEPt~aLlLT~~Ice~g 560 (1075)
T KOG2082|consen 481 SVGGNLVVATLAWPSPWVIVIGSFLSTCGAGLQSLTGAPRLLQAIAKDDIIPFLAPFGHGKANGEPTWALLLTAIICECG 560 (1075)
T ss_pred hccCcEEEEEecCCCceeeehhHHHHHhHHHHhhhcCcHHHHHHHhhcCccchhhhhccccCCCCccHHHHHHHHHHHhh
Confidence 467788899999999999999999999999999999999999999999999999999999 55 99999999999999
Q ss_pred HHHhcccccccCC
Q psy5317 89 ILMSAAKLTKPSF 101 (101)
Q Consensus 89 ilig~Ln~IApi~ 101 (101)
|++|++|.|||++
T Consensus 561 ILigslD~iApil 573 (1075)
T KOG2082|consen 561 ILIGSLDLIAPIL 573 (1075)
T ss_pred heeechhHHHHHH
Confidence 9999999999974
No 2
>KOG1288|consensus
Probab=99.86 E-value=1.4e-22 Score=173.02 Aligned_cols=92 Identities=22% Similarity=0.311 Sum_probs=87.4
Q ss_pred CchhhhhhhhhhhhhcccchhHHHHHHHHhhHHHHHhhhhhhhHHHHHhhhCCCCccccccCcC----CC-chHHHHHHH
Q psy5317 9 LPKYGLREYFESLELISAFSPLFYSAVLTSGLTCAFSSLQEAPRVFRHLSKDGLYPYIGWFGRG----KT-SRPHVLTTG 83 (101)
Q Consensus 9 ~c~~~L~~~~~v~~~~s~~~~li~~Gi~~stlssaL~~l~gApRvLqAia~D~l~P~l~~f~~g----~~-~~A~llt~~ 83 (101)
..|++|++||.+|+.+|.|+|++++||+++|++|++++++||.|+|||||||++||.+.+|+|+ +| +.|+++||+
T Consensus 353 ~~r~~Lq~dy~v~~~isl~p~fi~iGi~sttlfss~s~liGasrvL~alakD~lfg~ll~fak~~s~~~nP~~av~vtw~ 432 (945)
T KOG1288|consen 353 VPRTLLQNDYDVMMHISLHPPFILIGILSTTLFSSMSGLIGASRVLEALAKDDLFGGLLFFAKGSSYDGNPYVAVGVTWL 432 (945)
T ss_pred cchHHhhhchhheeeccccchHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhcccchhhheeeeccccCCCceeeeeHHHH
Confidence 4467999999999999999999999999999999999999999999999999999999999999 35 999999999
Q ss_pred HHHHHHHHhcccccccC
Q psy5317 84 IAAAFILMSAAKLTKPS 100 (101)
Q Consensus 84 i~~~~ilig~Ln~IApi 100 (101)
++|+++++||+|.||.+
T Consensus 433 lvqlvll~g~~N~iA~~ 449 (945)
T KOG1288|consen 433 LVQLVLLWGDINKIASM 449 (945)
T ss_pred HHHHHHHHhhHHHHHHH
Confidence 99999999999999865
No 3
>TIGR00930 2a30 K-Cl cotransporter.
Probab=99.68 E-value=3.9e-17 Score=143.40 Aligned_cols=95 Identities=36% Similarity=0.663 Sum_probs=88.9
Q ss_pred CCCCchhhhhhhhhhhhhcccchhHHHHHHHHhhHHHHHhhhhhhhHHHHHhhhCCCCccccccCcC--CC---chHHHH
Q psy5317 6 YTLLPKYGLREYFESLELISAFSPLFYSAVLTSGLTCAFSSLQEAPRVFRHLSKDGLYPYIGWFGRG--KT---SRPHVL 80 (101)
Q Consensus 6 ~~~~c~~~L~~~~~v~~~~s~~~~li~~Gi~~stlssaL~~l~gApRvLqAia~D~l~P~l~~f~~g--~~---~~A~ll 80 (101)
...+|.|+|++++.+++..+.+++++.+|++.+++++++++++++||++||+|||+++|++++|+|+ ++ ++|+++
T Consensus 365 ~~~p~~~gL~~~~~~~~~~~~~~~lI~ig~~~stlss~la~l~~asRvl~AmArDg~lP~l~~fakv~~k~~tP~~Alll 444 (953)
T TIGR00930 365 AHNTCSYGLMNNLQVMSLVSPFPPLITAGIFSATLSSALASLVSAPRLFQALCKDNIYPFLQFFGKGYGKNGEPLRAYLL 444 (953)
T ss_pred cccchhhhhcchHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcchhhcccCCCCCCcHHHHHH
Confidence 3468999999999999999999999999999999999999999999999999999999999999998 32 899999
Q ss_pred HHHHHHHHHHHhcccccccC
Q psy5317 81 TTGIAAAFILMSAAKLTKPS 100 (101)
Q Consensus 81 t~~i~~~~ilig~Ln~IApi 100 (101)
+++++++++++|++|.++|+
T Consensus 445 t~iIa~l~ili~~l~~ia~l 464 (953)
T TIGR00930 445 TAFIAEGFILIAELNTIAPI 464 (953)
T ss_pred HHHHHHHHHHHHhHHHHHHH
Confidence 99999999999999999985
No 4
>KOG2083|consensus
Probab=99.66 E-value=4.2e-17 Score=137.53 Aligned_cols=93 Identities=35% Similarity=0.605 Sum_probs=90.5
Q ss_pred CchhhhhhhhhhhhhcccchhHHHHHHHHhhHHHHHhhhhhhhHHHHHhhhCCCCccccccCcC--CC---chHHHHHHH
Q psy5317 9 LPKYGLREYFESLELISAFSPLFYSAVLTSGLTCAFSSLQEAPRVFRHLSKDGLYPYIGWFGRG--KT---SRPHVLTTG 83 (101)
Q Consensus 9 ~c~~~L~~~~~v~~~~s~~~~li~~Gi~~stlssaL~~l~gApRvLqAia~D~l~P~l~~f~~g--~~---~~A~llt~~ 83 (101)
+|.+++.+.++++..++.+.|++.+|++++++||+++++.+||+++|+|++|+++|...+|+|| || .|+.++++.
T Consensus 297 ~c~~gl~~~~qv~smvS~~~Pl~~AGi~~a~LSsalsslVsap~V~QaL~kd~~yp~i~~f~KgyGkn~~Plrg~~l~~~ 376 (643)
T KOG2083|consen 297 SCPIGLTNYLQVMSMVSTFGPLITAGILAAELSSALSSLVSAPKVLQALCKDSLYPSILFFAKGYGKNKEPLRGYLLTFL 376 (643)
T ss_pred CCccchHHHHHHHHhHhhcccchhhHHHHHHHHHHHHHHHhhhHHHHHHHhcCCCccHHHHHccCCccccchHHHHHHHH
Confidence 7999999999999999999999999999999999999999999999999999999999999999 55 899999999
Q ss_pred HHHHHHHHhcccccccCC
Q psy5317 84 IAAAFILMSAAKLTKPSF 101 (101)
Q Consensus 84 i~~~~ilig~Ln~IApi~ 101 (101)
++..++.+|++|.|||++
T Consensus 377 ~av~fi~igeln~iapii 394 (643)
T KOG2083|consen 377 TAVSFIAIGELNIIAPII 394 (643)
T ss_pred hHheeEEecccceeccch
Confidence 999999999999999985
No 5
>TIGR00908 2A0305 ethanolamine permease. The three genes used as the seed for this model (from Burkholderia pseudomallei, Pseudomonas aeruginosa and Clostridium acetobutylicum are all adjacent to genes for the catabolism of ethanolamine. Most if not all of the hits to this model have a similar arrangement of genes. This group is a member of the Amino Acid-Polyamine-Organocation (APC) Superfamily.
Probab=98.07 E-value=6.9e-06 Score=65.63 Aligned_cols=65 Identities=15% Similarity=0.112 Sum_probs=54.1
Q ss_pred HHHHHHHHhhHHHHHhhhhhhhHHHHHhhhCCCCccccccCcC-CC---chHHHHHHHHHHHHHHHhcccc
Q psy5317 30 LFYSAVLTSGLTCAFSSLQEAPRVFRHLSKDGLYPYIGWFGRG-KT---SRPHVLTTGIAAAFILMSAAKL 96 (101)
Q Consensus 30 li~~Gi~~stlssaL~~l~gApRvLqAia~D~l~P~l~~f~~g-~~---~~A~llt~~i~~~~ilig~Ln~ 96 (101)
++.++...+.+++..+.+.+++|+++++|||+.+| ++|+|. |+ ++|++++.+++.+..+.++.+.
T Consensus 279 ~i~~~~~~~~~~s~~~~~~~~sR~l~a~ardg~lP--~~~~~~~~~~~P~~Ail~~~~i~~~~~l~~~~~~ 347 (442)
T TIGR00908 279 FVNLVGLFGLIASFHGIIYGYSRQIFALSRAGYLP--ESLSKVNRKKAPVLAIVVPGVIGFGLSLTGQTAL 347 (442)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcc--HHHHHhCCCCCcHHHHHHHHHHHHHHHHhccHHH
Confidence 45556667788899999999999999999999999 678776 43 8999999999988888777654
No 6
>TIGR03810 arg_ornith_anti arginine/ornithine antiporter. Members of this protein family are the arginine/ornithine antiporter, ArcD. This exchanger of ornithine for arginine occurs in a system with arginine deiminase, ornithine carbamoyltransferase, and carbamate kinase, with together turn arginine to ornithine with the generation of ATP and release of CO2.
Probab=98.07 E-value=8.9e-06 Score=65.87 Aligned_cols=62 Identities=24% Similarity=0.327 Sum_probs=54.0
Q ss_pred hhHHHHHHHHhhHHHHHhhhhhhhHHHHHhhhCCCCccccccCcC-CC---chHHHHHHHHHHHHHHH
Q psy5317 28 SPLFYSAVLTSGLTCAFSSLQEAPRVFRHLSKDGLYPYIGWFGRG-KT---SRPHVLTTGIAAAFILM 91 (101)
Q Consensus 28 ~~li~~Gi~~stlssaL~~l~gApRvLqAia~D~l~P~l~~f~~g-~~---~~A~llt~~i~~~~ili 91 (101)
..++.+++..+++++..+.+.+++|+++++|||+.+| ++|+|. |+ ++|++++..+++++.++
T Consensus 279 ~~~i~~~~~is~~~~~~~~~~~~sR~~~a~ardg~lP--~~f~k~~~~~tP~~al~~~~~i~~~~~l~ 344 (468)
T TIGR03810 279 AVLINIGLIISILGAWLSWTLLPAEIPLLMAKDKLMP--KYFGKENANGAPTNALWLTNGLIQIFLLT 344 (468)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcc--HHHHhhCCCCCCHHHHHHHHHHHHHHHHH
Confidence 4578899999999999999999999999999999999 778876 43 89999998888776543
No 7
>TIGR00909 2A0306 amino acid transporter.
Probab=98.06 E-value=8.4e-06 Score=64.58 Aligned_cols=69 Identities=17% Similarity=0.189 Sum_probs=57.9
Q ss_pred chhHHHHHHHHhhHHHHHhhhhhhhHHHHHhhhCCCCccccccCcC--C-C--chHHHHHHHHHHHHHHHhccccc
Q psy5317 27 FSPLFYSAVLTSGLTCAFSSLQEAPRVFRHLSKDGLYPYIGWFGRG--K-T--SRPHVLTTGIAAAFILMSAAKLT 97 (101)
Q Consensus 27 ~~~li~~Gi~~stlssaL~~l~gApRvLqAia~D~l~P~l~~f~~g--~-~--~~A~llt~~i~~~~ilig~Ln~I 97 (101)
..+++.+++..+.+++.++.+.+++|+++++|||+.+| ++|+|. | + .+|+++..+++.+..+.++.|.+
T Consensus 278 ~~~~~~i~~~~~~~~~~~~~~~~~sR~~~~~a~dg~lP--~~~~~~~~~~~~P~~a~~~~~~i~~~~~~~~~~~~l 351 (429)
T TIGR00909 278 GGLILTAGAVFSIASVMLAGIYGTSRVLFAMSRDGLLP--GSLSKVHPKTGTPHMSIIIFSLTAALLASLVPLEGL 351 (429)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCc--HHHHHcCCCCCCcHHHHHHHHHHHHHHHHHcCHHHH
Confidence 34578899999999999999999999999999999999 578875 2 2 78899988888877777766654
No 8
>TIGR00906 2A0303 cationic amino acid transport permease.
Probab=98.05 E-value=8.7e-06 Score=68.10 Aligned_cols=68 Identities=22% Similarity=0.290 Sum_probs=58.1
Q ss_pred hHHHHHHHHhhHHHHHhhhhhhhHHHHHhhhCCCCccccccCcC--C-C--chHHHHHHHHHHHHHHHhcccccc
Q psy5317 29 PLFYSAVLTSGLTCAFSSLQEAPRVFRHLSKDGLYPYIGWFGRG--K-T--SRPHVLTTGIAAAFILMSAAKLTK 98 (101)
Q Consensus 29 ~li~~Gi~~stlssaL~~l~gApRvLqAia~D~l~P~l~~f~~g--~-~--~~A~llt~~i~~~~ilig~Ln~IA 98 (101)
.++.+|.+.+.+++.++.+.+.+|++.++|||+.+| ++|+|- | + ++|++++.+++.+..++.+++.+.
T Consensus 315 ~ii~~~~~~~~~~sl~~~~~~~sRil~amarDGlLP--~~fakv~~r~~tP~~Ail~~~iv~~il~~~~~~~~l~ 387 (557)
T TIGR00906 315 YIVAVGALCGMSTSLLGGMFPLPRVIYAMARDGLLF--KWLAQINSKTKTPINATVVSGAIAALMAFLFDLKALV 387 (557)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcc--HHHhccCCCCCCcHHHHHHHHHHHHHHHHHcCHHHHH
Confidence 467789999999999999999999999999999999 688876 2 2 899999999988877777776543
No 9
>PRK11021 putative transporter; Provisional
Probab=97.94 E-value=1.9e-05 Score=62.68 Aligned_cols=61 Identities=15% Similarity=0.114 Sum_probs=49.8
Q ss_pred hHHHHHHHHhhHHHHHhhhhhhhHHHHHhhhCCCCccccccCcC-CC---chHHHHHHHHHHHHHHH
Q psy5317 29 PLFYSAVLTSGLTCAFSSLQEAPRVFRHLSKDGLYPYIGWFGRG-KT---SRPHVLTTGIAAAFILM 91 (101)
Q Consensus 29 ~li~~Gi~~stlssaL~~l~gApRvLqAia~D~l~P~l~~f~~g-~~---~~A~llt~~i~~~~ili 91 (101)
+++.+....+.+++..+.+.+++|+++++|||+.+| ++|+|. |+ ++|++++.+++.+..++
T Consensus 262 ~ii~i~~~~s~~~~~~~~~~~~sR~l~a~ardg~lP--~~~~k~~~~~tP~~ail~~~~i~~~~~l~ 326 (410)
T PRK11021 262 WVICVIGYLACFASVNIYTQSFARLVWSQAREGRPP--SYLARLSARGVPVNALNAVLGCCAVSILL 326 (410)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCcc--HHHHhhccCCCcHHHHHHHHHHHHHHHHH
Confidence 455666778888898888999999999999999999 678877 43 79999988877765543
No 10
>PRK10836 lysine transporter; Provisional
Probab=97.94 E-value=2.4e-05 Score=63.75 Aligned_cols=63 Identities=25% Similarity=0.296 Sum_probs=53.6
Q ss_pred hHHHHHHHHhhHHHHHhhhhhhhHHHHHhhhCCCCccccccCcC-CC---chHHHHHHHHHHHHHHHhc
Q psy5317 29 PLFYSAVLTSGLTCAFSSLQEAPRVFRHLSKDGLYPYIGWFGRG-KT---SRPHVLTTGIAAAFILMSA 93 (101)
Q Consensus 29 ~li~~Gi~~stlssaL~~l~gApRvLqAia~D~l~P~l~~f~~g-~~---~~A~llt~~i~~~~ilig~ 93 (101)
.++.+++..+.+++..+.+.+++|++.++|||+.+| ++|+|- |+ ++|++++.+++.+..+.+.
T Consensus 298 ~ii~~~il~a~~~~~n~~~~~~sR~l~a~Ardg~lP--~~~~kv~~~~~P~~All~~~~~~~l~~l~~~ 364 (489)
T PRK10836 298 AVMNAVILTAVLSAGNSGMYASTRMLYTLACDGKAP--RIFAKLSRGGVPRNALYATTVIAGLCFLTSM 364 (489)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcC--HHHHhhCCCCCcHHHHHHHHHHHHHHHHHHc
Confidence 456678888999999999999999999999999999 678776 33 8999999998887776543
No 11
>PRK11357 frlA putative fructoselysine transporter; Provisional
Probab=97.93 E-value=1.6e-05 Score=63.70 Aligned_cols=69 Identities=20% Similarity=0.211 Sum_probs=57.0
Q ss_pred hhHHHHHHHHhhHHHHHhhhhhhhHHHHHhhhCCCCccccccCcC--C-C--chHHHHHHHHHHHHHHHhcccccc
Q psy5317 28 SPLFYSAVLTSGLTCAFSSLQEAPRVFRHLSKDGLYPYIGWFGRG--K-T--SRPHVLTTGIAAAFILMSAAKLTK 98 (101)
Q Consensus 28 ~~li~~Gi~~stlssaL~~l~gApRvLqAia~D~l~P~l~~f~~g--~-~--~~A~llt~~i~~~~ilig~Ln~IA 98 (101)
.+++.++...+.+++..+.+.+++|+++++|||+.+| ++|+|- | + ++|++++.+++.++++.++++.+.
T Consensus 281 ~~~~~~~~~~~~~~~~~~~~~~~sR~~~a~ardg~lp--~~~~~v~~~~~tP~~a~l~~~~~~~~~~~~~~~~~l~ 354 (445)
T PRK11357 281 GIFVAITAMIVILGSLSSCVMYQPRLEYAMAKDNLFF--KCFGHVHPKYNTPDVSIILQGALGIFFIFVSDLTSLL 354 (445)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHhcCCch--HHHHHhCCCCCCCHHHHHHHHHHHHHHHHHcCHHHHH
Confidence 3456677788889999999999999999999999998 577764 2 2 899999999999888888877643
No 12
>TIGR00905 2A0302 transporter, basic amino acid/polyamine antiporter (APA) family. This family includes several families of antiporters that, rather commonly, are encoded next to decarboxylases that convert one of the antiporter substrates into the other. This arrangement allows a cycle that can remove proteins from the cytoplasm and thereby protect against acidic conditions.
Probab=97.93 E-value=2.2e-05 Score=63.71 Aligned_cols=61 Identities=33% Similarity=0.355 Sum_probs=52.0
Q ss_pred hhHHHHHHHHhhHHHHHhhhhhhhHHHHHhhhCCCCccccccCcC-CC---chHHHHHHHHHHHHHH
Q psy5317 28 SPLFYSAVLTSGLTCAFSSLQEAPRVFRHLSKDGLYPYIGWFGRG-KT---SRPHVLTTGIAAAFIL 90 (101)
Q Consensus 28 ~~li~~Gi~~stlssaL~~l~gApRvLqAia~D~l~P~l~~f~~g-~~---~~A~llt~~i~~~~il 90 (101)
..++.++...+.+++.++.+.+++|+++++|||+.+| ++|+|- |+ ++|++++.+++.+..+
T Consensus 283 ~~~i~i~~~is~~~~~~~~~~~~sR~~~amardg~lP--~~~~~v~~~~tP~~Ai~~~~~i~~~~~~ 347 (473)
T TIGR00905 283 AVLISLGLIISVLGSLLSWTMLAAEVPFSAAKDGLFP--KIFGRVNKNGAPSVALLLTNILIQLFLL 347 (473)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChh--HHHHhhCccCCCHHHHHHHHHHHHHHHH
Confidence 3567888999999999999999999999999999999 678776 32 8999999888775544
No 13
>TIGR03428 ureacarb_perm permease, urea carboxylase system. A number of bacteria obtain nitrogen by biotin- and ATP-dependent urea degradation system distinct from urease. The two characterized proteins of this system are the enzymes urea carboxylase and allophanate hydrolase, but other, uncharacterized proteins co-occur as genes encoded nearby in multiple organisms. This family includes predicted permeases of the amino acid permease family, likely to transport either urea or a compound from which urea is derived. It is found so far only Actinobacteria, whereas a number of other species with the urea carboxylase have an adjacent ABC transporter operon.
Probab=97.91 E-value=3.5e-05 Score=62.56 Aligned_cols=65 Identities=15% Similarity=0.337 Sum_probs=53.9
Q ss_pred chhHHHHHHHHhhHHHHHhhhhhhhHHHHHhhhCCCCccccccCcC--C-C--chHHHHHHHHHHHHHHH
Q psy5317 27 FSPLFYSAVLTSGLTCAFSSLQEAPRVFRHLSKDGLYPYIGWFGRG--K-T--SRPHVLTTGIAAAFILM 91 (101)
Q Consensus 27 ~~~li~~Gi~~stlssaL~~l~gApRvLqAia~D~l~P~l~~f~~g--~-~--~~A~llt~~i~~~~ili 91 (101)
+...+.+.+..+.+++..+.+.+++|++.++|||+.+|+.++|+|- | + .+|++++.+++.+..++
T Consensus 297 ~~~~~~~~~~i~~~~~~~~~~~~~sR~~~a~Ardg~lP~s~~~~~v~~r~~tP~~A~~l~~~i~~~~~~i 366 (475)
T TIGR03428 297 WGTVLLVDVAIAILVCTLAIQTAGSRLMFSMARDGKLPASAQLSRVHPRTGTPILPSIVIGVLCIGILLI 366 (475)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcchHHhcccCCCCCCcHHHHHHHHHHHHHHHHH
Confidence 3445666778888999999999999999999999999988888876 2 2 78999998888776655
No 14
>TIGR00907 2A0304 amino acid permease (GABA permease).
Probab=97.89 E-value=4.1e-05 Score=61.95 Aligned_cols=62 Identities=18% Similarity=0.315 Sum_probs=52.4
Q ss_pred HHHHHHHHhhHHHHHhhhhhhhHHHHHhhhCCCCccccccCcC-C--C--chHHHHHHHHHHHHHHH
Q psy5317 30 LFYSAVLTSGLTCAFSSLQEAPRVFRHLSKDGLYPYIGWFGRG-K--T--SRPHVLTTGIAAAFILM 91 (101)
Q Consensus 30 li~~Gi~~stlssaL~~l~gApRvLqAia~D~l~P~l~~f~~g-~--~--~~A~llt~~i~~~~ili 91 (101)
++.+.+..+.+++..+.+.+++|++.++|||+.+|+-++|+|- | + ++|++++.+++.+..++
T Consensus 307 ~~~~~~~~~~~~~~~~~~~~~sR~l~a~ardg~lP~~~~f~~v~~~~~~P~~ai~~~~~i~~~~~~~ 373 (482)
T TIGR00907 307 FLLCLILVTSFFCAITCMTANSRMIYAFSRDGGLPFSPLWSRVNPRTQVPLNAVWLSAVWIILIGLL 373 (482)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCchHhhceeCCCCCCcHHHHHHHHHHHHHHHHH
Confidence 5667788888999999999999999999999999977788876 3 3 89999998887765544
No 15
>PF00324 AA_permease: Amino acid permease; InterPro: IPR004841 Amino acid permeases are integral membrane proteins involved in the transport of amino acids into the cell. A number of such proteins have been found to be evolutionary related [], [], []. These proteins seem to contain up to 12 transmembrane segments. The best conserved region in this family is located in the second transmembrane segment. This domain is found in a wide variety of permeases, as well as several hypothetical proteins. ; GO: 0006810 transport, 0055085 transmembrane transport, 0016020 membrane
Probab=97.87 E-value=6.9e-07 Score=72.14 Aligned_cols=70 Identities=23% Similarity=0.367 Sum_probs=56.2
Q ss_pred ccchhHHHHHHHHhhHHHHHhhhhhhhHHHHHhhhCCCCccccccCcC-CC---chHHHHHHHHHHHHHHHhccc
Q psy5317 25 SAFSPLFYSAVLTSGLTCAFSSLQEAPRVFRHLSKDGLYPYIGWFGRG-KT---SRPHVLTTGIAAAFILMSAAK 95 (101)
Q Consensus 25 s~~~~li~~Gi~~stlssaL~~l~gApRvLqAia~D~l~P~l~~f~~g-~~---~~A~llt~~i~~~~ilig~Ln 95 (101)
...+.++.++++.++++++++++.+++|+++++|||+..| -+++++- |+ ++|++++.+++.+..+.++++
T Consensus 286 ~~~~~i~~~~~l~s~~s~~~~~~~~~sR~l~ama~dg~lP-~~~~~~~~k~~~P~~Ai~~~~~i~~~~~l~~~~~ 359 (478)
T PF00324_consen 286 PWLAWIVNAGILISAFSSANASLYAASRLLYAMARDGLLP-KKFFARHPKNGVPYVAILVSSIISLLVLLLGSFS 359 (478)
T ss_pred ccccceecccchhhhhhhhhhhhcccceeehhhhhhhhhh-hhhhhhhhcCCceEEEEeeehhchheeeeeccch
Confidence 3445688899999999999999999999999999999999 1223322 33 899999999888887766554
No 16
>TIGR00913 2A0310 amino acid permease (yeast).
Probab=97.83 E-value=4.1e-05 Score=61.80 Aligned_cols=61 Identities=25% Similarity=0.309 Sum_probs=52.0
Q ss_pred hhHHHHHHHHhhHHHHHhhhhhhhHHHHHhhhCCCCccccccCcC-CC---chHHHHHHHHHHHHHH
Q psy5317 28 SPLFYSAVLTSGLTCAFSSLQEAPRVFRHLSKDGLYPYIGWFGRG-KT---SRPHVLTTGIAAAFIL 90 (101)
Q Consensus 28 ~~li~~Gi~~stlssaL~~l~gApRvLqAia~D~l~P~l~~f~~g-~~---~~A~llt~~i~~~~il 90 (101)
..++.++++.+.+++..+.+.+++|+++++|||+.+| ++|+|- |+ ++|++++.+++.+..+
T Consensus 290 ~~~~~~~~~~s~~~~~~~~~~~~sR~l~a~ardg~lP--~~f~k~~~~~~P~~Ai~~~~~~~~l~~l 354 (478)
T TIGR00913 290 PHIFNAVILISVLSAANSSLYASSRTLYALAHQGLAP--KIFAYVDRRGVPYVAVIVSSLFGLLAFL 354 (478)
T ss_pred hHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhCCccc--HHHHhhCCCCCCHHHHHHHHHHHHHHHH
Confidence 3467788899999999999999999999999999999 678876 43 8899998888766544
No 17
>PRK15049 L-asparagine permease; Provisional
Probab=97.83 E-value=4.2e-05 Score=62.96 Aligned_cols=61 Identities=18% Similarity=0.254 Sum_probs=52.2
Q ss_pred hHHHHHHHHhhHHHHHhhhhhhhHHHHHhhhCCCCccccccCcC-CC---chHHHHHHHHHHHHHHH
Q psy5317 29 PLFYSAVLTSGLTCAFSSLQEAPRVFRHLSKDGLYPYIGWFGRG-KT---SRPHVLTTGIAAAFILM 91 (101)
Q Consensus 29 ~li~~Gi~~stlssaL~~l~gApRvLqAia~D~l~P~l~~f~~g-~~---~~A~llt~~i~~~~ili 91 (101)
.++.+.++.+.+++..+.+.+++|++.++|||+.+| ++|+|- |+ ++|++++++++.+.+++
T Consensus 305 ~ii~~~ilia~~ss~ns~~~~~sR~l~a~Ardg~lP--~~f~kv~k~~~P~~Ail~~~~i~~l~~~l 369 (499)
T PRK15049 305 SIMNIVVLTAALSSLNSGLYCTGRILRSMAMGGSAP--SFMAKMSRQHVPYAGILATLVVYVVGVFL 369 (499)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcC--HHHHHhCCCCCCHHHHHHHHHHHHHHHHH
Confidence 567788899999999999999999999999999999 788876 43 89999998887665443
No 18
>TIGR00911 2A0308 L-type amino acid transporter.
Probab=97.82 E-value=3.2e-05 Score=63.08 Aligned_cols=68 Identities=13% Similarity=0.036 Sum_probs=55.1
Q ss_pred hhHHHHHHHHhhHHHHHhhhhhhhHHHHHhhhCCCCccccccCcC-C--C--chHHHHHHHHHHHHHHHhccccc
Q psy5317 28 SPLFYSAVLTSGLTCAFSSLQEAPRVFRHLSKDGLYPYIGWFGRG-K--T--SRPHVLTTGIAAAFILMSAAKLT 97 (101)
Q Consensus 28 ~~li~~Gi~~stlssaL~~l~gApRvLqAia~D~l~P~l~~f~~g-~--~--~~A~llt~~i~~~~ilig~Ln~I 97 (101)
.+++.+.+..+.+++..+.+.+++|+++++|||+.+|+ +|+|- + + .+|++++.+++.+..+.+++..+
T Consensus 318 ~~~i~~~~~is~~~~~~~~~~~~sR~l~a~ardg~lP~--~~~~v~~~~~~P~~all~~~~i~~l~~~~~~~~~l 390 (501)
T TIGR00911 318 SWAMPALVGLSCFGSVNGSLFSSSRLFFVGGREGHLPS--LLSMIHVKRLTPLPSLLIVCTLTLLMLFSGDIYSL 390 (501)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccH--HHHHhcCCCCCCHHHHHHHHHHHHHHHccCCHHHH
Confidence 45667778889999999999999999999999999995 56654 2 2 78999988888877777766543
No 19
>TIGR01773 GABAperm gamma-aminobutyrate permease. GabP is highly homologous to amino acid permeases from B. subtilis, E. coli, as well as to other members of the amino acid permease family (pfam00324). A member of the APC (amine-polyamine-choline) transporter superfamily, GABA permease possesses a "consensus amphiphatic region" (CAR) found to be evolutionarily conserved within this transport family. This amphiphatic region is located between helix 8 and cytoplasmic loop 8-9, forming a potential channel domain and suggested to play a significant role in ligand recognition and translocation. Unique to GABA permeases, a conserved cysteine residue (CYS-300, E.coli) located at the beginning of the amphiphatic domain, has been determined to be critical for catalytic specificity.
Probab=97.81 E-value=5.1e-05 Score=60.93 Aligned_cols=62 Identities=23% Similarity=0.252 Sum_probs=52.9
Q ss_pred hhHHHHHHHHhhHHHHHhhhhhhhHHHHHhhhCCCCccccccCcC-CC---chHHHHHHHHHHHHHHH
Q psy5317 28 SPLFYSAVLTSGLTCAFSSLQEAPRVFRHLSKDGLYPYIGWFGRG-KT---SRPHVLTTGIAAAFILM 91 (101)
Q Consensus 28 ~~li~~Gi~~stlssaL~~l~gApRvLqAia~D~l~P~l~~f~~g-~~---~~A~llt~~i~~~~ili 91 (101)
+.++.+++..+.+++..+.+.+++|++.++|||+.+| ++|+|- |+ .+|++++.+++.+..++
T Consensus 286 ~~ii~~~~~~~~~~~~~~~~~~~sR~~~a~ardg~lP--~~~~~v~~~~~P~~Ail~~~~~~~~~~l~ 351 (452)
T TIGR01773 286 KLIMDFVVLTAVLSCLNSALYTTSRMLYSLAERGDAP--RVFMKLNKKGVPVQAVLASTFFSFLTVVV 351 (452)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcC--HHHHhhCCCCCcHHHHHHHHHHHHHHHHH
Confidence 3466678889999999999999999999999999999 778876 33 89999998888877655
No 20
>PF13520 AA_permease_2: Amino acid permease; PDB: 3NCY_A 3GI8_C 3GIA_A 3GI9_C 3OB6_A 3L1L_A 3LRC_D 3LRB_B 4DJK_A 4DJI_A ....
Probab=97.78 E-value=0.00012 Score=57.68 Aligned_cols=62 Identities=19% Similarity=0.328 Sum_probs=53.9
Q ss_pred cchhHHHHHHHHhhHHHHHhhhhhhhHHHHHhhhCCCCccccccCcC-CC---chHHHHHHHHHHHHH
Q psy5317 26 AFSPLFYSAVLTSGLTCAFSSLQEAPRVFRHLSKDGLYPYIGWFGRG-KT---SRPHVLTTGIAAAFI 89 (101)
Q Consensus 26 ~~~~li~~Gi~~stlssaL~~l~gApRvLqAia~D~l~P~l~~f~~g-~~---~~A~llt~~i~~~~i 89 (101)
...+++.++...+.+++..+.+.+++|++.++|||+.+| ++|+|. |+ ++|+++..+++.++.
T Consensus 271 ~~~~~~~i~~~~~~~~~~~~~~~~~sR~l~~~a~d~~lP--~~~~~~~k~~~P~~a~~~~~~i~~i~~ 336 (426)
T PF13520_consen 271 WLAIIVSIAAILSLFGSINAFIFGASRLLYAMARDGVLP--KWFAKVNKFGTPYNAIILVAVISSILL 336 (426)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSS--GGGGTTSSSSSCHHHHHHHHHHHHHHH
T ss_pred ccccccccccccccccccchhhcchhhcccccccccchh--hhhhhccccCCceeeehhhhHHHHHHH
Confidence 455678899999999999999999999999999999999 788877 43 899999998886553
No 21
>PRK11387 S-methylmethionine transporter; Provisional
Probab=97.74 E-value=7.1e-05 Score=60.68 Aligned_cols=59 Identities=25% Similarity=0.272 Sum_probs=48.8
Q ss_pred hHHHHHHHHhhHHHHHhhhhhhhHHHHHhhhCCCCccccccCcC-CC---chHHHHHHHHHHHHH
Q psy5317 29 PLFYSAVLTSGLTCAFSSLQEAPRVFRHLSKDGLYPYIGWFGRG-KT---SRPHVLTTGIAAAFI 89 (101)
Q Consensus 29 ~li~~Gi~~stlssaL~~l~gApRvLqAia~D~l~P~l~~f~~g-~~---~~A~llt~~i~~~~i 89 (101)
.++.+++..+.+++..+++.+++|++.++|||+.+| ++|+|. |+ ++|++++.+++.+.+
T Consensus 291 ~ii~~~~~~s~~~~~~~~~~~~sR~l~a~ardg~lP--~~f~~~~~~~~P~~Ail~~~~~~~l~~ 353 (471)
T PRK11387 291 DIFNFVILTAILSAANSGLYASGRMLWSLSNEGTLP--ACFARLTKRGIPLTALSVSMLGGLLAL 353 (471)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhcCCcC--HHHHHhCCCCCcHHHHHHHHHHHHHHH
Confidence 466788899999999999999999999999999999 678876 43 788888866554443
No 22
>PRK10249 phenylalanine transporter; Provisional
Probab=97.74 E-value=6.6e-05 Score=60.87 Aligned_cols=61 Identities=20% Similarity=0.286 Sum_probs=51.1
Q ss_pred hHHHHHHHHhhHHHHHhhhhhhhHHHHHhhhCCCCccccccCcC-CC---chHHHHHHHHHHHHHHH
Q psy5317 29 PLFYSAVLTSGLTCAFSSLQEAPRVFRHLSKDGLYPYIGWFGRG-KT---SRPHVLTTGIAAAFILM 91 (101)
Q Consensus 29 ~li~~Gi~~stlssaL~~l~gApRvLqAia~D~l~P~l~~f~~g-~~---~~A~llt~~i~~~~ili 91 (101)
.++.+.++.+.+++..+.+.+++|+++++|||+.+| ++|+|. |+ ++|++++.+++.+..++
T Consensus 294 ~~~~~~~~~a~~~~~~~~~~~~sR~l~a~ardg~lP--~~~~kv~~~~~P~~All~~~~i~~l~~l~ 358 (458)
T PRK10249 294 SALNFVILVASLSVYNSGVYSNSRMLFGLSVQGNAP--KFLTRVSRRGVPINSLMLSGAITSLVVLI 358 (458)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcC--HHHHHhCCCCCCHHHHHHHHHHHHHHHHH
Confidence 345567788999999999999999999999999999 678876 43 89999999888776554
No 23
>PRK10197 gamma-aminobutyrate transporter; Provisional
Probab=97.69 E-value=9.8e-05 Score=59.67 Aligned_cols=61 Identities=26% Similarity=0.354 Sum_probs=51.4
Q ss_pred hHHHHHHHHhhHHHHHhhhhhhhHHHHHhhhCCCCccccccCcC-CC---chHHHHHHHHHHHHHHH
Q psy5317 29 PLFYSAVLTSGLTCAFSSLQEAPRVFRHLSKDGLYPYIGWFGRG-KT---SRPHVLTTGIAAAFILM 91 (101)
Q Consensus 29 ~li~~Gi~~stlssaL~~l~gApRvLqAia~D~l~P~l~~f~~g-~~---~~A~llt~~i~~~~ili 91 (101)
.++.+++..+.+++..+.+.+++|++.++|||+.+| ++|+|. |+ ++|++++.+++.+..+.
T Consensus 267 ~ii~~~i~~~~~~~~n~~~~~~sR~l~a~ardg~lP--~~~~~~~~~~~P~~Ail~~~~~~~l~~l~ 331 (446)
T PRK10197 267 LIMDCVILLSVTSCLNSALYTASRMLYSLSRRGDAP--AVMGKINRSKTPYVAVLLSTGAAFLTVVV 331 (446)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcC--HHHHhhCcCCCcHHHHHHHHHHHHHHHHH
Confidence 456677888999999999999999999999999999 578876 32 89999998877766554
No 24
>PRK10238 aromatic amino acid transporter; Provisional
Probab=97.68 E-value=0.0001 Score=59.72 Aligned_cols=61 Identities=20% Similarity=0.208 Sum_probs=51.6
Q ss_pred hHHHHHHHHhhHHHHHhhhhhhhHHHHHhhhCCCCccccccCcC-CC---chHHHHHHHHHHHHHHH
Q psy5317 29 PLFYSAVLTSGLTCAFSSLQEAPRVFRHLSKDGLYPYIGWFGRG-KT---SRPHVLTTGIAAAFILM 91 (101)
Q Consensus 29 ~li~~Gi~~stlssaL~~l~gApRvLqAia~D~l~P~l~~f~~g-~~---~~A~llt~~i~~~~ili 91 (101)
.++.+.++.+.+++..+.+.+++|++.++|||+.+| ++|+|- |+ ++|++++.+++.+..++
T Consensus 285 ~i~~~~i~~~~~s~~~~~~~~~sR~l~a~ardg~lP--~~f~kv~~~~~P~~Ail~~~~i~~l~~l~ 349 (456)
T PRK10238 285 NALNIVVLTAALSVYNSCVYCNSRMLFGLAQQGNAP--KALASVDKRGVPVNTILVSALVTALCVLI 349 (456)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcc--HHHHhhCcCCCcHHHHHHHHHHHHHHHHH
Confidence 355677788889999999999999999999999999 788876 43 89999999988777654
No 25
>PRK10644 arginine:agmatin antiporter; Provisional
Probab=97.64 E-value=0.00014 Score=58.45 Aligned_cols=61 Identities=18% Similarity=0.162 Sum_probs=51.0
Q ss_pred hHHHHHHHHhhHHHHHhhhhhhhHHHHHhhhCCCCccccccCcC-CC---chHHHHHHHHHHHHHHH
Q psy5317 29 PLFYSAVLTSGLTCAFSSLQEAPRVFRHLSKDGLYPYIGWFGRG-KT---SRPHVLTTGIAAAFILM 91 (101)
Q Consensus 29 ~li~~Gi~~stlssaL~~l~gApRvLqAia~D~l~P~l~~f~~g-~~---~~A~llt~~i~~~~ili 91 (101)
.++.++...+++++..+.+.+++|+++++|||+.+| ++|+|. |+ ++|++++.+++.+..+.
T Consensus 276 ~~v~~~~~~s~~~~~~~~~~~~sr~~~a~ardg~lP--~~~~~v~~~~tP~~Ai~~~~~i~~l~~l~ 340 (445)
T PRK10644 276 AIVSFCAAAGCLGSLGGWTLLAGQTAKAAADDGLFP--PIFARVNKAGTPVAGLLIVGVLMTIFQLS 340 (445)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcc--HHHHhhCcCCCCHHHHHHHHHHHHHHHHH
Confidence 456678888888888888999999999999999999 788876 43 89999999988776554
No 26
>PRK10655 potE putrescine transporter; Provisional
Probab=97.60 E-value=0.00015 Score=57.98 Aligned_cols=61 Identities=16% Similarity=0.260 Sum_probs=51.0
Q ss_pred hhHHHHHHHHhhHHHHHhhhhhhhHHHHHhhhCCCCccccccCcC-CC---chHHHHHHHHHHHHHH
Q psy5317 28 SPLFYSAVLTSGLTCAFSSLQEAPRVFRHLSKDGLYPYIGWFGRG-KT---SRPHVLTTGIAAAFIL 90 (101)
Q Consensus 28 ~~li~~Gi~~stlssaL~~l~gApRvLqAia~D~l~P~l~~f~~g-~~---~~A~llt~~i~~~~il 90 (101)
..++.++...+.+++..+.+.+++|++.+++||+.+| ++|+|. |+ ++|++++.+++.+..+
T Consensus 273 ~~~~~~~~~is~~~~~~~~~~~~sR~~~~~a~dg~lP--~~~~~v~~~~tP~~all~~~~i~~~l~l 337 (438)
T PRK10655 273 GKIVMALMVMSCCGSLLGWQFTIAQVFKSSADEGYFP--KIFSRVTKVDAPVQGMLIIVVIQSLLSL 337 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchh--HHHHhhCcCCCCHHHHHHHHHHHHHHHH
Confidence 3467778888999999999999999999999999999 678876 43 7899998887766544
No 27
>PRK11049 D-alanine/D-serine/glycine permease; Provisional
Probab=97.57 E-value=0.00019 Score=58.28 Aligned_cols=58 Identities=21% Similarity=0.244 Sum_probs=48.1
Q ss_pred hhHHHHHHHHhhHHHHHhhhhhhhHHHHHhhhCCCCccccccCcC-CC---chHHHHHHHHHHH
Q psy5317 28 SPLFYSAVLTSGLTCAFSSLQEAPRVFRHLSKDGLYPYIGWFGRG-KT---SRPHVLTTGIAAA 87 (101)
Q Consensus 28 ~~li~~Gi~~stlssaL~~l~gApRvLqAia~D~l~P~l~~f~~g-~~---~~A~llt~~i~~~ 87 (101)
..++.+.+..+.+++..+.+.+++|+++++|||+.+| ++|+|- |+ ++|++++.+++.+
T Consensus 295 ~~~~~~~~~~s~~~~~~~~~~~~sR~l~a~ardg~lP--~~~~kv~~~~tP~~Ai~~~~~~~~~ 356 (469)
T PRK11049 295 ASVINFVVLTSAASSANSGVFSTSRMLFGLAQEGVAP--KAFAKLSKRAVPAKGLTFSCICLLG 356 (469)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCC--HHHHhhCCCCCCHHHHHHHHHHHHH
Confidence 3466778889999999999999999999999999999 678776 32 8898888776543
No 28
>KOG1286|consensus
Probab=97.53 E-value=0.00023 Score=60.40 Aligned_cols=63 Identities=27% Similarity=0.300 Sum_probs=54.1
Q ss_pred HHHHHHHHhhHHHHHhhhhhhhHHHHHhhhCCCCccccccCcC-C--C-chHHHHHHHHHHHHHHHhcc
Q psy5317 30 LFYSAVLTSGLTCAFSSLQEAPRVFRHLSKDGLYPYIGWFGRG-K--T-SRPHVLTTGIAAAFILMSAA 94 (101)
Q Consensus 30 li~~Gi~~stlssaL~~l~gApRvLqAia~D~l~P~l~~f~~g-~--~-~~A~llt~~i~~~~ilig~L 94 (101)
++-+|++.+.+|++++++..+||++.++|+|+..|+ +|++- + . ..|.+++.+.+.+..+.-++
T Consensus 323 ivna~iL~~~~s~~n~~~y~~sR~l~amA~~G~~Pk--~f~~v~~~g~P~~a~~v~~~~~~l~~~~~~~ 389 (554)
T KOG1286|consen 323 IVNAGILIGLLSSLNSSLYAGSRVLYALAKDGLAPK--FFARVDRRGVPLVAVLVSGLFGALAALNFSL 389 (554)
T ss_pred hhhHHHHHHHHHHHHHHhHHhHHHHHHHHhcCCcch--HHhhcCCCCCchhHHHHHHHHHHHHHHHhcc
Confidence 778999999999999999999999999999999995 56655 2 2 78888888888777777666
No 29
>PRK10580 proY putative proline-specific permease; Provisional
Probab=97.51 E-value=0.00026 Score=57.11 Aligned_cols=58 Identities=17% Similarity=0.206 Sum_probs=46.6
Q ss_pred hHHHHHHHHhhHHHHHhhhhhhhHHHHHhhhCCCCccccccCcC-CC---chHHHHHHHHHHHH
Q psy5317 29 PLFYSAVLTSGLTCAFSSLQEAPRVFRHLSKDGLYPYIGWFGRG-KT---SRPHVLTTGIAAAF 88 (101)
Q Consensus 29 ~li~~Gi~~stlssaL~~l~gApRvLqAia~D~l~P~l~~f~~g-~~---~~A~llt~~i~~~~ 88 (101)
.++.+.+..+.+++..+.+.+++|+++++|||+.+| ++|+|- |+ ++|++++.++..+.
T Consensus 284 ~~~~~~~~~~~~~~~~~~~~~~sR~~~~~ardg~lP--~~~~kv~~~~~P~~Ai~~~~~~~~~~ 345 (457)
T PRK10580 284 SILNFVVLTASLSAINSDVFGVGRMLHGMAEQGSAP--KIFSKTSRRGIPWVTVLVMTTALLFA 345 (457)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcC--HHHHhhCCCCCcHHHHHHHHHHHHHH
Confidence 355567778889999999999999999999999999 678776 43 78888887655443
No 30
>PRK10435 cadB lysine/cadaverine antiporter; Provisional
Probab=97.42 E-value=0.0004 Score=55.81 Aligned_cols=58 Identities=21% Similarity=0.183 Sum_probs=48.2
Q ss_pred hHHHHHHHHhhHHHHHhhhhhhhHHHHHhhhCCCCccccccCcC-CC---chHHHHHHHHHHHH
Q psy5317 29 PLFYSAVLTSGLTCAFSSLQEAPRVFRHLSKDGLYPYIGWFGRG-KT---SRPHVLTTGIAAAF 88 (101)
Q Consensus 29 ~li~~Gi~~stlssaL~~l~gApRvLqAia~D~l~P~l~~f~~g-~~---~~A~llt~~i~~~~ 88 (101)
+++.++...+.+++..+.+...+|..+++|||+.+| ++|+|. |+ ++|++++.+++.+.
T Consensus 272 ~~i~~~~~i~~l~~~~~~~~~~~r~~~~~ardG~lP--~~f~k~nk~g~P~~Al~~~~~~~~~l 333 (435)
T PRK10435 272 PLVSAFTAFACLTSLGSWMMLVGQAGVRAANDGNFP--KVYGEVDKNGIPKKGLLLAAVKMTAL 333 (435)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcc--HHHHhhCcCCCCHHHHHHHHHHHHHH
Confidence 455567788889998899999999999999999999 678887 43 78998887776554
No 31
>COG0531 PotE Amino acid transporters [Amino acid transport and metabolism]
Probab=97.41 E-value=0.00037 Score=54.90 Aligned_cols=61 Identities=20% Similarity=0.216 Sum_probs=51.8
Q ss_pred cchhHHHHHHHHhhHHHHHhhhhhhhHHHHHhhhCCCCccccccCcC-CC----chHHHHHHHHHHHH
Q psy5317 26 AFSPLFYSAVLTSGLTCAFSSLQEAPRVFRHLSKDGLYPYIGWFGRG-KT----SRPHVLTTGIAAAF 88 (101)
Q Consensus 26 ~~~~li~~Gi~~stlssaL~~l~gApRvLqAia~D~l~P~l~~f~~g-~~----~~A~llt~~i~~~~ 88 (101)
.+.+++.++.+.+++++..+...+.+|++++++||+.+|. +|+|- ++ .+|++++.+++.+.
T Consensus 285 ~~~~~i~~~~~~~~~~~~~~~~~~~sR~~~~~ardg~lP~--~~~~~~~~~~~P~~a~~~~~ii~~~l 350 (466)
T COG0531 285 WGAIIIAILALLSLFGSLLAWILAVSRVLYAMARDGLLPK--FFAKVNPKGRTPVIALILTGIISLIL 350 (466)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccH--HHHHhCCCCCCCHHHHHHHHHHHHHH
Confidence 4567888999999999999999999999999999999997 66655 22 78888888888833
No 32
>TIGR03813 put_Glu_GABA_T putative glutamate/gamma-aminobutyrate antiporter. Members of this protein family are putative putative glutamate/gamma-aminobutyrate antiporters. Each member of the seed alignment is found adjacent to a glutamate decarboxylase, which converts glutamate (Glu) to gamma-aminobutyrate (GABA). However, the majority belong to genome contexts with a glutaminase (converts Gln to Glu) as well as the decarboxylase that converts Glu to GABA. The specificity of the transporter remains uncertain.
Probab=97.35 E-value=0.00059 Score=55.30 Aligned_cols=57 Identities=14% Similarity=0.177 Sum_probs=45.7
Q ss_pred hHHHHHHHHhhHHHHHhhhhhhhHHHHHhhhCCCCccccccCcC-CC---chHHHHHHHHHHH
Q psy5317 29 PLFYSAVLTSGLTCAFSSLQEAPRVFRHLSKDGLYPYIGWFGRG-KT---SRPHVLTTGIAAA 87 (101)
Q Consensus 29 ~li~~Gi~~stlssaL~~l~gApRvLqAia~D~l~P~l~~f~~g-~~---~~A~llt~~i~~~ 87 (101)
+++.+++..+.+++..+.+.+++|.+.++|||+.+| ++|+|- |+ ++|++++.+++.+
T Consensus 282 ~i~~~~~~~~~l~~~~~~~~~~sR~~~a~ardg~lP--~~~~kv~k~~~P~~a~~~~~~~~~~ 342 (474)
T TIGR03813 282 PILAFALAIGVLAGVVTWVAGPSSGMLAVAKAGYLP--TFFQKTNKNGMPIHIMFVQGIAVSV 342 (474)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCC--HHHhccCCCCCcHHHHHHHHHHHHH
Confidence 455566777788888888899999999999999999 678876 43 7888888876544
No 33
>TIGR00910 2A0307_GadC glutamate:gamma-aminobutyrate antiporter. Lowered cutoffs from 1000/500 to 800/300, promoted from subfamily to equivalog, and put into a Genome Property DHH 9/1/2009
Probab=97.35 E-value=0.00049 Score=56.86 Aligned_cols=57 Identities=16% Similarity=0.109 Sum_probs=47.2
Q ss_pred HHHHHHHHhhHHHHHhhhhhhhHHHHHhhhCCCCccccccCcC-CC---chHHHHHHHHHHHH
Q psy5317 30 LFYSAVLTSGLTCAFSSLQEAPRVFRHLSKDGLYPYIGWFGRG-KT---SRPHVLTTGIAAAF 88 (101)
Q Consensus 30 li~~Gi~~stlssaL~~l~gApRvLqAia~D~l~P~l~~f~~g-~~---~~A~llt~~i~~~~ 88 (101)
++.+.+..+.+++..+.+.+++|.+++.|||+.+| ++|+|- |+ .+|++++.+++.+.
T Consensus 285 ii~~~~~~~~l~~~~~~i~~~sR~l~~~ardg~lP--~~~~k~nk~~~P~~a~~~~~~i~~l~ 345 (507)
T TIGR00910 285 VIAALIAFGVLAEIASWIVGPSRGMFAAAQKGLLP--AAFAKMNKHEVPVPLVIIQGIITSIA 345 (507)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCcC--HHHHhhCcCCCcHHHHHHHHHHHHHH
Confidence 55566777778888888999999999999999999 678876 43 88999988887664
No 34
>KOG1287|consensus
Probab=96.96 E-value=0.0017 Score=54.53 Aligned_cols=72 Identities=13% Similarity=0.047 Sum_probs=61.5
Q ss_pred cchhHHHHHHHHhhHHHHHhhhhhhhHHHHHhhhCCCCccccccCcC-CC--chHHHHHHHHHHHHHHHhccccc
Q psy5317 26 AFSPLFYSAVLTSGLTCAFSSLQEAPRVFRHLSKDGLYPYIGWFGRG-KT--SRPHVLTTGIAAAFILMSAAKLT 97 (101)
Q Consensus 26 ~~~~li~~Gi~~stlssaL~~l~gApRvLqAia~D~l~P~l~~f~~g-~~--~~A~llt~~i~~~~ilig~Ln~I 97 (101)
.|.|.+-+.+-.+++++..+.+..+.|.+|+.||++.+|..-...+. .+ +.|++++.+++.+.++++|+|++
T Consensus 285 ~~~~~ip~~ValS~~G~~n~~ifs~SR~~~~~areG~LP~~~s~i~~~~~TP~~allf~~~~~i~~~~~~d~~~L 359 (479)
T KOG1287|consen 285 VFAWAIPFSVALSLIGSLNSVIFSSSRLFYAGAREGHLPAFFSMISVRRFTPRPALLFSGLLSIVLSLIGDFDQL 359 (479)
T ss_pred chHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHccCccHHHHhhcCCCCCChHHHHHHHHHHHHHHHHhhHHHH
Confidence 46678888999999999999999999999999999999975444333 32 88999999999999999998764
No 35
>PRK10746 putative transport protein YifK; Provisional
Probab=96.89 E-value=0.0024 Score=51.97 Aligned_cols=54 Identities=19% Similarity=0.186 Sum_probs=44.3
Q ss_pred hHHHHHHHHhhHHHHHhhhhhhhHHHHHhhhCCCCccccccCcC-CC---chHHHHHHHH
Q psy5317 29 PLFYSAVLTSGLTCAFSSLQEAPRVFRHLSKDGLYPYIGWFGRG-KT---SRPHVLTTGI 84 (101)
Q Consensus 29 ~li~~Gi~~stlssaL~~l~gApRvLqAia~D~l~P~l~~f~~g-~~---~~A~llt~~i 84 (101)
.++.+.++.+.+|++.+.+++++|.+.++|||+..|+ +|+|- |+ ++|++++.+.
T Consensus 285 ~i~~~~il~a~~s~~n~~~~~~sR~l~~~a~~g~lP~--~~~~~~~~g~P~~al~~~~~~ 342 (461)
T PRK10746 285 GIINFVVLTAALSGCNSGMYSCGRMLYALAKNRQLPA--AMAKVSRHGVPVAGVAVSILI 342 (461)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcCH--HHHHhCCCCCcHHHHHHHHHH
Confidence 3556677889999999999999999999999999995 57766 43 7888877544
No 36
>COG0833 LysP Amino acid transporters [Amino acid transport and metabolism]
Probab=96.54 E-value=0.0044 Score=52.78 Aligned_cols=62 Identities=26% Similarity=0.286 Sum_probs=52.2
Q ss_pred HHHHHHHHhhHHHHHhhhhhhhHHHHHhhhCCCCccccccCcC-CC---chHHHHHHHHHHHHHHHhc
Q psy5317 30 LFYSAVLTSGLTCAFSSLQEAPRVFRHLSKDGLYPYIGWFGRG-KT---SRPHVLTTGIAAAFILMSA 93 (101)
Q Consensus 30 li~~Gi~~stlssaL~~l~gApRvLqAia~D~l~P~l~~f~~g-~~---~~A~llt~~i~~~~ilig~ 93 (101)
++-+=|+.|.+|++=++++.++|.|.+||+|+--|+ +|+|- |+ .+|++.|..++.+..+-.+
T Consensus 328 imNaVIL~svlSa~NS~lYasSR~L~sLA~~g~APk--~f~~~~r~GvP~~al~vt~~fg~lafl~~~ 393 (541)
T COG0833 328 IMNAVILTSVLSAANSGLYASSRMLYSLAKQGKAPK--IFAKVDRRGVPLVALLVTLLFGLLAFLNSS 393 (541)
T ss_pred HHHHHHHHHHHHHhhccchHHHHHHHHHHhcCCCch--HHHhhCCCCCchHHHHHHHHHHHHHHHHhc
Confidence 556778999999999999999999999999999995 67766 43 8999999998887765433
No 37
>KOG1289|consensus
Probab=96.22 E-value=0.0092 Score=50.94 Aligned_cols=57 Identities=18% Similarity=0.296 Sum_probs=45.7
Q ss_pred HHHhhHHHHHhhhhhhhHHHHHhhhCCCCccccccCcC-CC----chHHHHHHHHHHHHHHH
Q psy5317 35 VLTSGLTCAFSSLQEAPRVFRHLSKDGLYPYIGWFGRG-KT----SRPHVLTTGIAAAFILM 91 (101)
Q Consensus 35 i~~stlssaL~~l~gApRvLqAia~D~l~P~l~~f~~g-~~----~~A~llt~~i~~~~ili 91 (101)
++.+.+..+.++++.++|+.+|-|||+.+|+-++++|- |. ..|+++..+++.+..++
T Consensus 347 ~ii~~f~~gi~s~~a~SR~v~afaRDg~LP~S~~~~~v~~~t~~P~nAv~l~~i~s~llgll 408 (550)
T KOG1289|consen 347 IIIALFFMGISSLTASSRLVYAFARDGGLPFSKYLAKVNPQTKVPLNAVLLSCIISILLGLL 408 (550)
T ss_pred HHHHHHHhhHHHHHHHHHHHhhhhccCCCCCcceeeecCCCCCCcHHHHHHHHHHHHHHHHH
Confidence 45566777888999999999999999999999888876 32 78888888776655443
No 38
>PRK15238 inner membrane transporter YjeM; Provisional
Probab=95.56 E-value=0.03 Score=45.85 Aligned_cols=60 Identities=15% Similarity=0.134 Sum_probs=47.7
Q ss_pred HHHHHHHHhhHHHHHhhhhhhhHHHHHhhhCCCCccccccCcC-CC---chHHHHHHHHHHHHHHH
Q psy5317 30 LFYSAVLTSGLTCAFSSLQEAPRVFRHLSKDGLYPYIGWFGRG-KT---SRPHVLTTGIAAAFILM 91 (101)
Q Consensus 30 li~~Gi~~stlssaL~~l~gApRvLqAia~D~l~P~l~~f~~g-~~---~~A~llt~~i~~~~ili 91 (101)
++.+++..+.+++..+...+..|.+++.++|+.+| ++|+|- |+ .+|++++.+++.+.++.
T Consensus 319 ~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~g~~P--~~f~k~nk~g~P~~a~~~~~~i~~l~~~~ 382 (496)
T PRK15238 319 ITGLSMFLAYTGAFFTLSYSPLKQLIEGTPKALWP--KKMTKLNKNGMPANAMWLQCIIVSVFILL 382 (496)
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHhhCccCccc--HHHHhhCcCCCcHHHHHHHHHHHHHHHHH
Confidence 44577788888888888889999999999999999 577776 43 88999888877755433
No 39
>COG1113 AnsP Gamma-aminobutyrate permease and related permeases [Amino acid transport and metabolism]
Probab=93.92 E-value=0.037 Score=46.51 Aligned_cols=59 Identities=24% Similarity=0.280 Sum_probs=48.8
Q ss_pred HHhhHHHHHhhhhhhhHHHHHhhhCCCCccccccCcC-CC---chHHHHHHHHHHHHHHHhccccccc
Q psy5317 36 LTSGLTCAFSSLQEAPRVFRHLSKDGLYPYIGWFGRG-KT---SRPHVLTTGIAAAFILMSAAKLTKP 99 (101)
Q Consensus 36 ~~stlssaL~~l~gApRvLqAia~D~l~P~l~~f~~g-~~---~~A~llt~~i~~~~ilig~Ln~IAp 99 (101)
+.|.+|+.=++++++.|.|..+|+|+--| +.|+|- |+ ++|+++|.+...++++ ||.+.|
T Consensus 295 LtAa~S~~NSglystsRmL~~la~~g~AP--k~~~klsk~gVP~~ai~~s~~~~~~~V~---Lny~~P 357 (462)
T COG1113 295 LTAALSALNSGLYSTSRMLYSLAKQGDAP--KAFAKLSKRGVPVNAILLSAVVLLLGVV---LNYILP 357 (462)
T ss_pred eechhhcccccccccchHHHHHhhcCccc--HhHhhccccCCCHHHHHHHHHHHHHHHH---HHhhcc
Confidence 56788999999999999999999999999 467777 54 8999999888877765 566555
No 40
>PHA02764 hypothetical protein; Provisional
Probab=64.29 E-value=7 Score=32.34 Aligned_cols=40 Identities=15% Similarity=0.136 Sum_probs=28.5
Q ss_pred hhhHHHHHhhhCCCCccccccCcC-CCchHHHHHHHHHHHHHHHh
Q psy5317 49 EAPRVFRHLSKDGLYPYIGWFGRG-KTSRPHVLTTGIAAAFILMS 92 (101)
Q Consensus 49 gApRvLqAia~D~l~P~l~~f~~g-~~~~A~llt~~i~~~~ilig 92 (101)
..+|+.|+++-|+++| +.|.|- ||.. ++-+++..++.++-
T Consensus 258 ~~srli~~~~fd~~lp--e~f~k~~~nv~--~l~f~~~~~~~~~e 298 (399)
T PHA02764 258 IQSRLIQTMSFDKVLP--EKFSKINPNVL--LLIFIAETIANVLE 298 (399)
T ss_pred hHHHHHHHHHhhhhch--HHHhccCCCce--eHHHHHHHHHHHHH
Confidence 4679999999999999 688888 6621 14455555555543
No 41
>PF15061 DUF4538: Domain of unknown function (DUF4538)
Probab=40.99 E-value=43 Score=20.72 Aligned_cols=37 Identities=8% Similarity=0.226 Sum_probs=30.8
Q ss_pred cchhHHHHHHHHhhHHHHHhhhhhhh-------HHHHHhhhCCC
Q psy5317 26 AFSPLFYSAVLTSGLTCAFSSLQEAP-------RVFRHLSKDGL 62 (101)
Q Consensus 26 ~~~~li~~Gi~~stlssaL~~l~gAp-------RvLqAia~D~l 62 (101)
.|...+.+|-|.+-++.|+-..+-.| |-.|++-|+++
T Consensus 4 g~r~~~~~ggfVg~iG~a~Ypi~~~Pmm~~eeYk~~Q~~nR~gI 47 (58)
T PF15061_consen 4 GWRYALFVGGFVGLIGAALYPIYFRPMMNPEEYKKEQKINRAGI 47 (58)
T ss_pred cccchhhHHHHHHHHHHHHhhhhcccccChHHHHHHHHHHHhcc
Confidence 36667889999999999999999988 56788888765
No 42
>TIGR03782 Bac_Flav_CT_J Bacteroides conjugative transposon TraJ protein. Members of this protein family are designated TraM and are found in a proposed transfer region of a class of conjugative transposon found in the Bacteroides lineage. This family is related conjugation system proteins in the Proteobacteria, including TrbL of Agrobacterium Ti plasmids and VirB6.
Probab=33.88 E-value=40 Score=27.42 Aligned_cols=27 Identities=30% Similarity=0.519 Sum_probs=22.0
Q ss_pred hhhhhhHHHHHhhhCC---CCccccccCcC
Q psy5317 46 SLQEAPRVFRHLSKDG---LYPYIGWFGRG 72 (101)
Q Consensus 46 ~l~gApRvLqAia~D~---l~P~l~~f~~g 72 (101)
=++.|-|+-|++||++ ++|-++.|+-|
T Consensus 36 L~Yva~rvW~~laraepiDV~PLLRPFalG 65 (322)
T TIGR03782 36 LFYVALRVWQSLARAEPIDVYPLLRPFALG 65 (322)
T ss_pred HHHHHHHHHHHHhCCCCcchHHhhhHHHHH
Confidence 5789999999999995 67888777744
No 43
>TIGR03648 Na_symport_lg probable sodium:solute symporter, VC_2705 subfamily. This family belongs to a larger family of transporters of the sodium:solute symporter superfamily, TC 2.A.21. Members of this strictly bacterial protein subfamily are found almost invariably immediately downstream from a member of family TIGR03647. Occasionally, the two genes are fused.
Probab=33.36 E-value=75 Score=26.69 Aligned_cols=34 Identities=26% Similarity=0.247 Sum_probs=24.7
Q ss_pred HHHHHHHHhhHHHHHhhhhhhhHHHHHhhhCCCCccc
Q psy5317 30 LFYSAVLTSGLTCAFSSLQEAPRVFRHLSKDGLYPYI 66 (101)
Q Consensus 30 li~~Gi~~stlssaL~~l~gApRvLqAia~D~l~P~l 66 (101)
++.+|++++.+|++-+.+....- .++||=.-|+.
T Consensus 370 l~~ag~~aA~mSt~~s~l~a~st---~~~~Di~~~~~ 403 (552)
T TIGR03648 370 LVAAGGLAAALSTAAGLLLVISS---AISHDLYYRII 403 (552)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHh
Confidence 56789999999888777777764 46777554544
No 44
>TIGR02121 Na_Pro_sym sodium/proline symporter. This family consists of the sodium/proline symporter (proline permease) from a number of Gram-negative and Gram-positive bacteria and from the archaeal genus Methanosarcina. Using the related pantothenate permease as an outgroup, candidate sequences from Bifidobacterium longum and several from archaea are found to be outside the clade defined by known proline permeases. These sequences, scoring between 570 and -40, define the range between trusted and noise cutoff scores.
Probab=28.61 E-value=80 Score=25.97 Aligned_cols=29 Identities=21% Similarity=0.259 Sum_probs=21.9
Q ss_pred HHHHHHHHhhHHHHHhhhhhhhHHHHHhhhCC
Q psy5317 30 LFYSAVLTSGLTCAFSSLQEAPRVFRHLSKDG 61 (101)
Q Consensus 30 li~~Gi~~stlssaL~~l~gApRvLqAia~D~ 61 (101)
++.+|++++.+|++=+.+..+.- .++||=
T Consensus 322 l~~a~ilaA~mST~~s~l~s~ss---~~~~Di 350 (487)
T TIGR02121 322 ILLAAILAAIMSTISSQLLVSSS---ALTEDF 350 (487)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH---HHHHHH
Confidence 67889999999988888877774 355663
No 45
>PF00474 SSF: Sodium:solute symporter family; InterPro: IPR001734 Sodium/substrate symport (or co-transport) is a widespread mechanism of solute transport across cytoplasmic membranes of pro- and eukaryotic cells. Thereby the energy stored in an inwardly directed electrochemical sodium gradient (sodium motive force, SMF) is used to drive solute accumulation against a concentration gradient. The SMF is generated by primary sodium pumps (e.g. sodium/potassium ATPases, sodium translocating respiratory chain complexes) or via the action of sodium/proton antiporters. Sodium/substrate transporters are grouped in different families based on sequence similarities [, ]. One of these families, known as the sodium:solute symporter family (SSSF), contains over a hundred members of pro- and eukaryotic origin []. The average hydropathy plot for SSSF proteins predicts 11 to 15 putative transmembrane domains (TMs) in alpha-helical conformation. A secondary structure model of PutP from Escherichia coli suggests the protein contains 13 TMs with the N terminus located on the periplasmic side of the membrane and the C terminus facing the cytoplasm. The results support the idea of a common topological motif for members of the SSSF. Transporters with a C-terminal extension are proposed to have an additional 14th TM. An ordered binding model of sodium/substrate transport suggests that sodium binds to the empty transporter first, thereby inducing a conformational alteration which increases the affinity of the transporter for the solute. The formation of the ternary complex induces another structural change that exposes sodium and substrate to the other site of the membrane. Substrate and sodium are released and the empty transporter re-orientates in the membrane allowing the cycle to start again.; GO: 0005215 transporter activity, 0006810 transport, 0055085 transmembrane transport, 0016020 membrane; PDB: 3DH4_D 2XQ2_A.
Probab=28.27 E-value=2.3e+02 Score=22.31 Aligned_cols=34 Identities=29% Similarity=0.393 Sum_probs=23.4
Q ss_pred HHHHHHHHhhHHHHHhhhhhhhHHHHHhhhCCCCccc
Q psy5317 30 LFYSAVLTSGLTCAFSSLQEAPRVFRHLSKDGLYPYI 66 (101)
Q Consensus 30 li~~Gi~~stlssaL~~l~gApRvLqAia~D~l~P~l 66 (101)
++.+|++++.+|++=+.+....- .++||=.-|+.
T Consensus 296 l~~~~~~aA~~ST~~s~l~a~ss---~~~~Di~~~~~ 329 (406)
T PF00474_consen 296 LFLAGILAAIMSTADSLLLAISS---IFSRDIYKPFI 329 (406)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH---HHHHHCCCCCC
T ss_pred HHHHHHHHhhhHHHHHHHhhhhh---hhhHHhhhccc
Confidence 77788888888887777776664 35677544433
No 46
>PF01566 Nramp: Natural resistance-associated macrophage protein; InterPro: IPR001046 The natural resistance-associated macrophage protein (NRAMP) family consists of Nramp1, Nramp2, and yeast proteins Smf1 and Smf2. The NRAMP family is a novel family of functionally related proteins defined by a conserved hydrophobic core of ten transmembrane domains []. Nramp1 is an integral membrane protein expressed exclusively in cells of the immune system and is recruited to the membrane of a phagosome upon phagocytosis. Nramp2 is a multiple divalent cation transporter for Fe2+, Mn2+ and Zn2+ amongst others. It is expressed at high levels in the intestine; and is major transferrin-independent iron uptake system in mammals []. The yeast proteins Smf1 and Smf2 may also transport divalent cations []. The natural resistance of mice to infection with intracellular parasites is controlled by the Bcg locus, which modulates the cytostatic/cytocidal activity of phagocytes. Nramp1, the gene responsible, is expressed exclusively in macrophages and poly-morphonuclear leukocytes, and encodes a polypeptide (natural resistance-associated macrophage protein) with features typical of integral membrane proteins. Other transporter proteins from a variety of sources also belong to this family.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane
Probab=24.67 E-value=51 Score=25.88 Aligned_cols=30 Identities=13% Similarity=0.311 Sum_probs=25.7
Q ss_pred hhHHHHHHHHhhHHHHHhhhhhhhHHHHHh
Q psy5317 28 SPLFYSAVLTSGLTCAFSSLQEAPRVFRHL 57 (101)
Q Consensus 28 ~~li~~Gi~~stlssaL~~l~gApRvLqAi 57 (101)
++++.+|.+++.++|++....+++++++..
T Consensus 255 ~~lF~igl~~a~fss~i~~~~~~~~~~~~~ 284 (358)
T PF01566_consen 255 RYLFAIGLFAAGFSSSITATLAGAYVLADF 284 (358)
T ss_pred HHhHHHHHHHHHHhhHHHhccccceehHhh
Confidence 457789999999999999999999877543
No 47
>PF04854 DUF624: Protein of unknown function, DUF624; InterPro: IPR006938 This family consists of uncharacterised or hypothetical bacterial proteins.
Probab=24.43 E-value=1.5e+02 Score=17.93 Aligned_cols=55 Identities=15% Similarity=0.044 Sum_probs=33.9
Q ss_pred HHHHHHhhHHHHHhhhhhhhHHHHHhhhCC-CCccccccCcC--CC-chHHHHHHHHHHHHH
Q psy5317 32 YSAVLTSGLTCAFSSLQEAPRVFRHLSKDG-LYPYIGWFGRG--KT-SRPHVLTTGIAAAFI 89 (101)
Q Consensus 32 ~~Gi~~stlssaL~~l~gApRvLqAia~D~-l~P~l~~f~~g--~~-~~A~llt~~i~~~~i 89 (101)
+.|...=|++.|..++.. +.+...||+ =.+..+.|-|. +| +++..+..+...+..
T Consensus 13 l~~l~v~tigPA~~Al~~---~~~~~~~~~~~~~~~~~f~~~fk~nf~~~~~~~~~~~~~~~ 71 (77)
T PF04854_consen 13 LAGLPVFTIGPATAALYY---VVRKWVRDEEDSYLFRDFWRAFKQNFKQSLLLGLILLLLLA 71 (77)
T ss_pred HHHHHHHHHHHHHHHHHH---HHHHHHcCCccChHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566666677776666554 455677888 55555666666 45 666666665555443
No 48
>PRK10484 putative transporter; Provisional
Probab=24.07 E-value=1.4e+02 Score=24.87 Aligned_cols=30 Identities=23% Similarity=0.307 Sum_probs=21.0
Q ss_pred HHHHHHHHhhHHHHHhhhhhhhHHHHHhhhCCCC
Q psy5317 30 LFYSAVLTSGLTCAFSSLQEAPRVFRHLSKDGLY 63 (101)
Q Consensus 30 li~~Gi~~stlssaL~~l~gApRvLqAia~D~l~ 63 (101)
++.+|++++++|++=+.+..+.- .+.|| ++
T Consensus 331 l~~a~ilAA~mST~~s~l~s~st---~~t~D-iy 360 (523)
T PRK10484 331 FFAAVLFGAILSTFNGFLNSAST---LFSLD-IY 360 (523)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH---HHHHH-hh
Confidence 67788888888887777766653 34566 44
No 49
>TIGR02458 CbtA cobalt transporter subunit CbtA (proposed). This model represents a family of proteins which have been proposed to act as cobalt transporters acting in concert with vitamin B12 biosynthesis systems. Evidence for this assignment includes 1) prediction of five trans-membrane segments, 2) positional gene linkage with known B12 biosynthesis genes, 3) upstream proximity of B12 transcriptional regulatory sites, 4) the absence of other known cobalt import systems and 5) the obligate co-localization with a small protein (CbtB) having a single additional trans-membrane segment and a C-terminal histidine-rich motif likely to be a metal-binding site.
Probab=23.94 E-value=1e+02 Score=23.83 Aligned_cols=32 Identities=9% Similarity=0.269 Sum_probs=29.0
Q ss_pred HHHHHHHHhhHHHHHhhhhhhhHHHHHhhhCC
Q psy5317 30 LFYSAVLTSGLTCAFSSLQEAPRVFRHLSKDG 61 (101)
Q Consensus 30 li~~Gi~~stlssaL~~l~gApRvLqAia~D~ 61 (101)
-.++|+.+..+.+.++-+.+.|.++||++-++
T Consensus 5 al~AGllAGlla~~~q~~~~eP~I~~Ae~yE~ 36 (225)
T TIGR02458 5 ALFAGLLAGLVAALLQALFTVPLILQAETYET 36 (225)
T ss_pred HHHHHHHHHHHHHHHHHHHhccHHHHHHHHhc
Confidence 35789999999999999999999999999775
No 50
>COG0170 SEC59 Dolichol kinase [Lipid metabolism]
Probab=21.52 E-value=3.3e+02 Score=20.29 Aligned_cols=25 Identities=12% Similarity=0.057 Sum_probs=21.6
Q ss_pred chhHHHHHHHHhhHHHHHhhhhhhh
Q psy5317 27 FSPLFYSAVLTSGLTCAFSSLQEAP 51 (101)
Q Consensus 27 ~~~li~~Gi~~stlssaL~~l~gAp 51 (101)
..+...+|++..+++.++++++|--
T Consensus 112 ~~~~~~~~I~~l~~GD~lAsiiG~~ 136 (216)
T COG0170 112 PIEVAIAGILVLALGDGLASIIGKR 136 (216)
T ss_pred cHHHHHHHHHHHHHhhHHHHHhCcc
Confidence 3468899999999999999999843
No 51
>PF09490 CbtA: Probable cobalt transporter subunit (CbtA)
Probab=20.53 E-value=1.2e+02 Score=23.11 Aligned_cols=34 Identities=15% Similarity=0.214 Sum_probs=29.3
Q ss_pred HHHHHHHhhHHHHHhhhhhhhHHHHHhhhCCCCc
Q psy5317 31 FYSAVLTSGLTCAFSSLQEAPRVFRHLSKDGLYP 64 (101)
Q Consensus 31 i~~Gi~~stlssaL~~l~gApRvLqAia~D~l~P 64 (101)
.++|+.+.-+..+++...+-|.+.||++-++=-.
T Consensus 10 llAGllAGlla~~~a~~~~eP~I~~Ai~~E~~~~ 43 (227)
T PF09490_consen 10 LLAGLLAGLLAFAFARVFGEPLIDAAIAYEEAAA 43 (227)
T ss_pred HHHHHHHHHHHHHHHHHhcCcHHHHHHHHhcccc
Confidence 4689999999999999999999999998665433
Done!