Query psy5317
Match_columns 101
No_of_seqs 107 out of 407
Neff 5.5
Searched_HMMs 29240
Date Fri Aug 16 23:33:14 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy5317.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/5317hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3gia_A Uncharacterized protein 98.6 4E-08 1.4E-12 75.8 5.9 69 29-99 274-345 (444)
2 4djk_A Probable glutamate/gamm 98.2 1.2E-06 4E-11 68.7 5.2 64 28-93 290-358 (511)
3 3l1l_A Arginine/agmatine antip 98.2 2.9E-06 9.9E-11 65.2 6.4 63 27-91 274-340 (445)
4 3dh4_A Sodium/glucose cotransp 40.9 68 0.0023 25.5 6.3 34 29-65 323-356 (530)
5 2xq2_A Sodium/glucose cotransp 21.1 76 0.0026 25.6 3.4 33 30-65 353-385 (593)
6 3vjj_A P9-1; 3.00A {Rice black 17.2 32 0.0011 26.9 0.3 27 40-66 285-312 (368)
7 1g92_A Poneratoxin, PAC-TX; ne 13.0 24 0.00081 17.5 -0.9 15 44-58 7-21 (26)
8 2kdt_A Neuroendocrine converta 10.3 80 0.0027 17.7 0.6 6 52-57 32-37 (45)
9 1sj7_A Talin 1; structural pro 7.0 3.6E+02 0.012 19.0 3.0 30 32-61 91-120 (174)
10 4ezc_A UREA transporter 1; mem 6.4 2.9E+02 0.0099 21.7 2.4 26 25-50 234-259 (384)
No 1
>3gia_A Uncharacterized protein MJ0609; membrane protein, transporter, cell membrane, membrane, transmembrane, transport protein; HET: D10 BCN; 2.32A {Methanocaldococcus jannaschii} PDB: 3gi9_C* 3gi8_C
Probab=98.63 E-value=4e-08 Score=75.82 Aligned_cols=69 Identities=20% Similarity=0.207 Sum_probs=61.3
Q ss_pred hHHHHHHHHhhHHHHHhhhhhhhHHHHHhhhCCCCccccccCcC-CC--chHHHHHHHHHHHHHHHhccccccc
Q psy5317 29 PLFYSAVLTSGLTCAFSSLQEAPRVFRHLSKDGLYPYIGWFGRG-KT--SRPHVLTTGIAAAFILMSAAKLTKP 99 (101)
Q Consensus 29 ~li~~Gi~~stlssaL~~l~gApRvLqAia~D~l~P~l~~f~~g-~~--~~A~llt~~i~~~~ilig~Ln~IAp 99 (101)
.++.++.+.+.+++..+.+.+++|+++++|||+.+| ++|+|. ++ .+|++++.+++.++.+++++|.+.+
T Consensus 274 ~~i~~~~~~~~~~~~~~~~~~~sR~l~a~a~dg~lP--~~f~~~~~~~P~~a~~~~~~~~~~~~~~~~~~~l~~ 345 (444)
T 3gia_A 274 LLISIGALFSISSAMNATIYGGANVAYSLAKDGELP--EFFERKVWFKSTEGLYITSALGVLFALLFNMEGVAS 345 (444)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTTHHHHHHHHHHSSCC--SSCCTTSCCSCTHHHHHHHHHHHHHHHHSCHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC--HHHhCCCCCCCcHHHHHHHHHHHHHHHHcCHHHHHH
Confidence 467789999999999999999999999999999999 678877 33 8999999999999988888887654
No 2
>4djk_A Probable glutamate/gamma-aminobutyrate antiporter; LEUT, glutamate-GABA antiporter, transport protein; 3.10A {Escherichia coli} PDB: 4dji_A
Probab=98.23 E-value=1.2e-06 Score=68.71 Aligned_cols=64 Identities=17% Similarity=0.157 Sum_probs=52.3
Q ss_pred hhHHHHHHHHhhHHHHHhhhhhhhHHHHHhhhCCCCccccccCcC-CC---chHHHHHHHH-HHHHHHHhc
Q psy5317 28 SPLFYSAVLTSGLTCAFSSLQEAPRVFRHLSKDGLYPYIGWFGRG-KT---SRPHVLTTGI-AAAFILMSA 93 (101)
Q Consensus 28 ~~li~~Gi~~stlssaL~~l~gApRvLqAia~D~l~P~l~~f~~g-~~---~~A~llt~~i-~~~~ilig~ 93 (101)
..++.+++..+.+++..+.+.+++|+++++|||+.+| ++|+|. |+ .+|++++.++ +..++.+++
T Consensus 290 ~~~~~~~~~~~~~~~~~~~~~~~sR~l~a~ardg~lP--~~~~~~~~~~~P~~ai~~~~~~~~l~~~~~~~ 358 (511)
T 4djk_A 290 VRVISALLLLGVLAEIASWIVGPSRGMYVTAQKNLLP--AAFAKMNKNGVPVTLVISQLVITSIALIILTN 358 (511)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTHHHHHTCHHHHGGGCS--SSCCCCCSSSCCCHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCccc--HHHHhcCCCCCcHHHHHHHHHHHHHHHHHhcc
Confidence 4577889999999999999999999999999999999 788887 43 8899888444 444455555
No 3
>3l1l_A Arginine/agmatine antiporter; TCDB 2.A.3.2.5, ADIC, Arg-bound, amino-acid transport, cell inner membrane, cell membrane, membrane; HET: ARG BNG; 3.00A {Escherichia coli} PDB: 3h5m_A* 3h6b_A 3lrb_A 3lrc_A 3ob6_A* 3hqk_A 3ncy_A
Probab=98.18 E-value=2.9e-06 Score=65.21 Aligned_cols=63 Identities=17% Similarity=0.147 Sum_probs=54.2
Q ss_pred chhHHHHHHHHhhHHHHHhhhhhhhHHHHHhhhCCCCccccccCcC-CC---chHHHHHHHHHHHHHHH
Q psy5317 27 FSPLFYSAVLTSGLTCAFSSLQEAPRVFRHLSKDGLYPYIGWFGRG-KT---SRPHVLTTGIAAAFILM 91 (101)
Q Consensus 27 ~~~li~~Gi~~stlssaL~~l~gApRvLqAia~D~l~P~l~~f~~g-~~---~~A~llt~~i~~~~ili 91 (101)
...++.+++..+.+++..+.+.+++|+++++|||+.+| ++|+|. |+ ++|++++.+++.+..++
T Consensus 274 ~~~~~~~~~~~~~~~~~~~~~~~~sR~~~~~a~dg~lP--~~~~~~~~~~~P~~a~~~~~~~~~~~~~~ 340 (445)
T 3l1l_A 274 AGAIVSFCAAAGCLGSLGGWTLLAGQTAKAAADDGLFP--PIFARVNKAGTPVAGLIIVGILMTIFQLS 340 (445)
T ss_dssp HHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHTTSSC--GGGGCCCTTCCCHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCc--HHHHhcCCCCCCHHHHHHHHHHHHHHHHH
Confidence 45678899999999999999999999999999999999 678877 43 89999999887766543
No 4
>3dh4_A Sodium/glucose cotransporter; membrane protein, symporter, sugar transport, SGLT, ION TRAN membrane, sodium transport, symport; HET: GAL; 2.70A {Vibrio parahaemolyticus}
Probab=40.92 E-value=68 Score=25.48 Aligned_cols=34 Identities=15% Similarity=0.181 Sum_probs=25.3
Q ss_pred hHHHHHHHHhhHHHHHhhhhhhhHHHHHhhhCCCCcc
Q psy5317 29 PLFYSAVLTSGLTCAFSSLQEAPRVFRHLSKDGLYPY 65 (101)
Q Consensus 29 ~li~~Gi~~stlssaL~~l~gApRvLqAia~D~l~P~ 65 (101)
-++.+|++++.+|++-+.+.++.- .+.+|=.-|+
T Consensus 323 Gl~~a~llAA~mST~ss~l~s~st---~~~~Diy~~~ 356 (530)
T 3dh4_A 323 GVVFAALAAAIVSSLASMLNSTAT---IFTMDIYKEY 356 (530)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH---HHHHHTCCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHH---HHHhHHHHHh
Confidence 377899999999998888888875 3566654443
No 5
>2xq2_A Sodium/glucose cotransporter; transport protein, inverted repeats, LEUT-fold, galactose; 2.73A {Vibrio parahaemolyticus} PDB: 2xq2_B 2kpe_A
Probab=21.10 E-value=76 Score=25.60 Aligned_cols=33 Identities=15% Similarity=0.203 Sum_probs=23.7
Q ss_pred HHHHHHHHhhHHHHHhhhhhhhHHHHHhhhCCCCcc
Q psy5317 30 LFYSAVLTSGLTCAFSSLQEAPRVFRHLSKDGLYPY 65 (101)
Q Consensus 30 li~~Gi~~stlssaL~~l~gApRvLqAia~D~l~P~ 65 (101)
++.+|++++.+|++-+.+....- .+.+|=.-|+
T Consensus 353 l~~a~llaA~mST~~s~l~a~st---~~~~Diy~~~ 385 (593)
T 2xq2_A 353 VVFAALAAAIVSSLASMLNSTAT---IFTMDIYKEY 385 (593)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH---HHHHHTHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHh
Confidence 67789999999888887777775 3466654343
No 6
>3vjj_A P9-1; 3.00A {Rice black streaked dwarf virus}
Probab=17.16 E-value=32 Score=26.93 Aligned_cols=27 Identities=33% Similarity=0.595 Sum_probs=22.4
Q ss_pred HHHHHhhhhhhhH-HHHHhhhCCCCccc
Q psy5317 40 LTCAFSSLQEAPR-VFRHLSKDGLYPYI 66 (101)
Q Consensus 40 lssaL~~l~gApR-vLqAia~D~l~P~l 66 (101)
+=..|++++..|. ++|.++||++|-.+
T Consensus 285 lRfqL~Slistp~~I~e~i~K~GLFk~i 312 (368)
T 3vjj_A 285 LRFQLSSLISTPALIREKIAKEGLFKII 312 (368)
T ss_dssp HHHHCSSCCCCCHHHHHHHHHSCSEEEC
T ss_pred HHHHhhhhccChHHHHHHHHhcCceEEE
Confidence 3456889999998 89999999998654
No 7
>1g92_A Poneratoxin, PAC-TX; neurotoxin, sodium channel inhibitor; NMR {Synthetic} SCOP: j.19.1.2
Probab=13.02 E-value=24 Score=17.49 Aligned_cols=15 Identities=27% Similarity=0.445 Sum_probs=10.5
Q ss_pred HhhhhhhhHHHHHhh
Q psy5317 44 FSSLQEAPRVFRHLS 58 (101)
Q Consensus 44 L~~l~gApRvLqAia 58 (101)
|+++.-.|-+.|||-
T Consensus 7 lgsllmtppviqaih 21 (26)
T 1g92_A 7 LGSLLMTPPVIQAIH 21 (26)
T ss_dssp HHTCSSSCCTTTHHH
T ss_pred HHHHhcCcHHHHHHH
Confidence 456667788888874
No 8
>2kdt_A Neuroendocrine convertase 1; secretory granules, prohorme convertase, calcium, cleavage on PAIR of basic residues, cytoplasmic vesicle; NMR {Mus musculus} PDB: 2ke3_A
Probab=10.31 E-value=80 Score=17.68 Aligned_cols=6 Identities=33% Similarity=0.733 Sum_probs=3.5
Q ss_pred HHHHHh
Q psy5317 52 RVFRHL 57 (101)
Q Consensus 52 RvLqAi 57 (101)
|+||||
T Consensus 32 rLlQAL 37 (45)
T 2kdt_A 32 RLLQAL 37 (45)
T ss_dssp THHHHH
T ss_pred HHHHHH
Confidence 566665
No 9
>1sj7_A Talin 1; structural protein; 2.50A {Mus musculus} SCOP: a.215.1.1
Probab=7.01 E-value=3.6e+02 Score=19.01 Aligned_cols=30 Identities=7% Similarity=0.207 Sum_probs=27.0
Q ss_pred HHHHHHhhHHHHHhhhhhhhHHHHHhhhCC
Q psy5317 32 YSAVLTSGLTCAFSSLQEAPRVFRHLSKDG 61 (101)
Q Consensus 32 ~~Gi~~stlssaL~~l~gApRvLqAia~D~ 61 (101)
-+|.-.+|++|-|-.+.-.-|.|.||-.|+
T Consensus 91 aVG~AittI~SNl~em~k~vk~laAL~~de 120 (174)
T 1sj7_A 91 AVGCAVTTISSNLTEMSRGVKLLAALLEDE 120 (174)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred chhhHHHHHHhhhHHHHHHHHHHHhhccCC
Confidence 589999999999999999999999997765
No 10
>4ezc_A UREA transporter 1; membrane protein, channel, SLC14, structural genomics, PSI-biology, NEW YORK consortium on membrane PROT structure, nycomps; HET: BGC BOG SPL; 2.36A {Bos taurus} PDB: 4ezd_A*
Probab=6.40 E-value=2.9e+02 Score=21.69 Aligned_cols=26 Identities=15% Similarity=0.137 Sum_probs=18.1
Q ss_pred ccchhHHHHHHHHhhHHHHHhhhhhh
Q psy5317 25 SAFSPLFYSAVLTSGLTCAFSSLQEA 50 (101)
Q Consensus 25 s~~~~li~~Gi~~stlssaL~~l~gA 50 (101)
...+.++++|++.++--.++-+++|+
T Consensus 234 ~~tG~lil~gi~i~S~~~al~Al~Gs 259 (384)
T 4ezc_A 234 PWTGGIFLGAILLSSPLMCLHAAIGS 259 (384)
T ss_dssp HHHHHHHHHHHHHHCHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHcCHHHHHHHHHHH
Confidence 34556889999988777666555554
Done!