Query psy5317
Match_columns 101
No_of_seqs 107 out of 407
Neff 5.5
Searched_HMMs 13730
Date Fri Aug 16 23:33:23 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy5317.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/5317hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1d6ga_ g.33.1.1 (A:) Cholecys 21.2 15 0.0011 19.5 0.9 18 1-18 9-26 (47)
2 d2hmfa2 d.58.18.10 (A:404-470) 11.7 51 0.0037 17.8 1.6 16 50-65 18-33 (67)
3 d1i5za1 a.4.5.4 (A:138-206) Ca 10.7 49 0.0036 17.5 1.3 14 50-63 46-59 (69)
4 d2pila_ d.24.1.1 (A:) Pilin Gc 9.8 1.6E+02 0.011 16.4 3.7 26 30-55 10-35 (158)
5 d1wg8a1 a.60.13.1 (A:109-206) 9.5 49 0.0036 19.5 1.0 10 48-57 84-93 (98)
6 d2cdqa3 d.58.18.10 (A:420-494) 8.7 61 0.0044 17.9 1.1 17 50-66 17-33 (75)
7 d3e5ua1 a.4.5.4 (A:148-227) Ch 8.6 66 0.0048 17.3 1.3 15 49-63 46-60 (80)
8 d2gaua1 a.4.5.4 (A:152-232) Tr 8.2 73 0.0053 17.0 1.4 15 50-64 46-60 (81)
9 d2b5dx1 a.8.3.3 (X:415-528) Al 8.0 62 0.0045 19.7 1.0 17 51-67 88-105 (114)
10 d1ufaa1 a.8.3.3 (A:413-517) Hy 7.9 63 0.0046 19.5 1.0 10 58-67 90-99 (105)
No 1
>d1d6ga_ g.33.1.1 (A:) Cholecystokinin A receptor, N-domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=21.23 E-value=15 Score=19.54 Aligned_cols=18 Identities=22% Similarity=0.196 Sum_probs=15.2
Q ss_pred CCCccCCCCchhhhhhhh
Q psy5317 1 MNSTSYTLLPKYGLREYF 18 (101)
Q Consensus 1 ~~~~~~~~~c~~~L~~~~ 18 (101)
+|+++-+..|.-+|-|..
T Consensus 9 ~ngsnit~~CelgleNeT 26 (47)
T d1d6ga_ 9 VNGSNITPPCELGLENET 26 (47)
T ss_dssp TTTCSSSCCBCCSSSSSC
T ss_pred hcCCCCCChhhcccccce
Confidence 699998889999997764
No 2
>d2hmfa2 d.58.18.10 (A:404-470) Aspartokinase {Methanococcus jannaschii [TaxId: 2190]}
Probab=11.73 E-value=51 Score=17.75 Aligned_cols=16 Identities=25% Similarity=0.368 Sum_probs=12.9
Q ss_pred hhHHHHHhhhCCCCcc
Q psy5317 50 APRVFRHLSKDGLYPY 65 (101)
Q Consensus 50 ApRvLqAia~D~l~P~ 65 (101)
+.|++++|++.++=-.
T Consensus 18 ~arif~~L~~~~InV~ 33 (67)
T d2hmfa2 18 AGKIFTAVSESGANIK 33 (67)
T ss_dssp HHHHHHHHHHTTCCCC
T ss_pred HHHHHHHHHHcCCChH
Confidence 6799999999986543
No 3
>d1i5za1 a.4.5.4 (A:138-206) Catabolite gene activator protein (CAP), C-terminal domain {Escherichia coli [TaxId: 562]}
Probab=10.71 E-value=49 Score=17.47 Aligned_cols=14 Identities=21% Similarity=0.453 Sum_probs=11.1
Q ss_pred hhHHHHHhhhCCCC
Q psy5317 50 APRVFRHLSKDGLY 63 (101)
Q Consensus 50 ApRvLqAia~D~l~ 63 (101)
..|+|+.+.+++++
T Consensus 46 vsr~L~~l~~~glI 59 (69)
T d1i5za1 46 VGRILKMLEDQNLI 59 (69)
T ss_dssp HHHHHHHHHHTTSE
T ss_pred HHHHHHHHHHCCCE
Confidence 45689999999875
No 4
>d2pila_ d.24.1.1 (A:) Pilin Gc {Neisseria gonorrhoeae [TaxId: 485]}
Probab=9.84 E-value=1.6e+02 Score=16.41 Aligned_cols=26 Identities=12% Similarity=0.125 Sum_probs=18.1
Q ss_pred HHHHHHHHhhHHHHHhhhhhhhHHHH
Q psy5317 30 LFYSAVLTSGLTCAFSSLQEAPRVFR 55 (101)
Q Consensus 30 li~~Gi~~stlssaL~~l~gApRvLq 55 (101)
++++||+++-.-.++...+-..|.-+
T Consensus 10 iaIIgILaaia~P~~~~~~~~a~~~~ 35 (158)
T d2pila_ 10 IAIVGILAAVALPAYQDYTARAQVSE 35 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56788888887777776666655433
No 5
>d1wg8a1 a.60.13.1 (A:109-206) Putative methyltransferase TM0872, insert domain {Thermus thermophilus [TaxId: 274]}
Probab=9.54 E-value=49 Score=19.49 Aligned_cols=10 Identities=30% Similarity=0.554 Sum_probs=7.3
Q ss_pred hhhhHHHHHh
Q psy5317 48 QEAPRVFRHL 57 (101)
Q Consensus 48 ~gApRvLqAi 57 (101)
--|.|++|||
T Consensus 84 ~~atrvFQAL 93 (98)
T d1wg8a1 84 HPARKTFQAL 93 (98)
T ss_dssp CTTHHHHHHH
T ss_pred ChHHHHHHHH
Confidence 3467888886
No 6
>d2cdqa3 d.58.18.10 (A:420-494) Aspartokinase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}
Probab=8.68 E-value=61 Score=17.89 Aligned_cols=17 Identities=24% Similarity=0.342 Sum_probs=13.9
Q ss_pred hhHHHHHhhhCCCCccc
Q psy5317 50 APRVFRHLSKDGLYPYI 66 (101)
Q Consensus 50 ApRvLqAia~D~l~P~l 66 (101)
+.|++++|++.++-..+
T Consensus 17 aarif~aL~~~~InV~m 33 (75)
T d2cdqa3 17 LERAFHVLYTKGVNVQM 33 (75)
T ss_dssp HHHHHHHHHHHTCCCSE
T ss_pred HHHHHHHHHHcCCceEE
Confidence 67999999998876654
No 7
>d3e5ua1 a.4.5.4 (A:148-227) Chlorophenol reduction protein CprK {Desulfitobacterium hafniense [TaxId: 49338]}
Probab=8.60 E-value=66 Score=17.30 Aligned_cols=15 Identities=20% Similarity=0.499 Sum_probs=12.3
Q ss_pred hhhHHHHHhhhCCCC
Q psy5317 49 EAPRVFRHLSKDGLY 63 (101)
Q Consensus 49 gApRvLqAia~D~l~ 63 (101)
...|+|+.+.+++++
T Consensus 46 tvsr~l~~l~~~glI 60 (80)
T d3e5ua1 46 TVSRVLASLKRENIL 60 (80)
T ss_dssp HHHHHHHHHHHTTSE
T ss_pred HHHHHHHHHHHCCcE
Confidence 356799999999976
No 8
>d2gaua1 a.4.5.4 (A:152-232) Transcriptional regulator PG0396, C-terminal domain {Porphyromonas gingivalis [TaxId: 837]}
Probab=8.22 E-value=73 Score=16.99 Aligned_cols=15 Identities=13% Similarity=0.266 Sum_probs=12.0
Q ss_pred hhHHHHHhhhCCCCc
Q psy5317 50 APRVFRHLSKDGLYP 64 (101)
Q Consensus 50 ApRvLqAia~D~l~P 64 (101)
..|+|+.+.+++++=
T Consensus 46 vsr~L~~l~~~glI~ 60 (81)
T d2gaua1 46 AIRTLSTFVSERMLA 60 (81)
T ss_dssp HHHHHHHHHHTTSEE
T ss_pred HHHHHHHHHHCCCEE
Confidence 457999999999763
No 9
>d2b5dx1 a.8.3.3 (X:415-528) Alpha-amylase AmyC {Thermotoga maritima [TaxId: 2336]}
Probab=8.04 E-value=62 Score=19.72 Aligned_cols=17 Identities=24% Similarity=0.495 Sum_probs=11.5
Q ss_pred hHHHHHh-hhCCCCcccc
Q psy5317 51 PRVFRHL-SKDGLYPYIG 67 (101)
Q Consensus 51 pRvLqAi-a~D~l~P~l~ 67 (101)
.+.|..+ .+|++||.+.
T Consensus 88 ~~~L~~~E~~D~iFp~id 105 (114)
T d2b5dx1 88 EEMLRYYEWTDAIFPEIN 105 (114)
T ss_dssp HHHHHHHHHHSCSCTTCC
T ss_pred HHHHHHHHHHCCCCCCcC
Confidence 3444444 6899999875
No 10
>d1ufaa1 a.8.3.3 (A:413-517) Hypothetical protein TT1467, domain 2 {Thermus thermophilus [TaxId: 274]}
Probab=7.87 E-value=63 Score=19.53 Aligned_cols=10 Identities=20% Similarity=0.501 Sum_probs=8.3
Q ss_pred hhCCCCcccc
Q psy5317 58 SKDGLYPYIG 67 (101)
Q Consensus 58 a~D~l~P~l~ 67 (101)
.+|++||.+.
T Consensus 90 ~~d~iFP~id 99 (105)
T d1ufaa1 90 ERDNPFPEAD 99 (105)
T ss_dssp HHSCCCTTCC
T ss_pred HhCCCCCCCC
Confidence 5899999875
Done!